Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1296680 | sp|Q9FLW0|Y5241_ARATH | 34.336 | 399 | 205 | 14 | 2 | 367 | 107 | 481 | 4.39e-42 | 165 |
Msa1296680 | sp|Q9FLW0|Y5241_ARATH | 34.507 | 284 | 142 | 10 | 309 | 575 | 30 | 286 | 6.44e-23 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1296680 | A0A072V069 | 68.882 | 331 | 67 | 5 | 1 | 304 | 104 | 425 | 1.10e-139 | 424 |
Msa1296680 | A0A072V069 | 71.480 | 277 | 76 | 2 | 304 | 578 | 25 | 300 | 1.45e-121 | 377 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000610 | Msa1296680 | 0.804020 | 2.639937e-49 | -8.615850e-47 |
Msa0004340 | Msa1296680 | 0.809990 | 1.439812e-50 | -8.615850e-47 |
Msa0024500 | Msa1296680 | 0.814627 | 1.399251e-51 | -8.615850e-47 |
Msa0081290 | Msa1296680 | 0.804366 | 2.236564e-49 | -8.615850e-47 |
Msa0081700 | Msa1296680 | 0.805121 | 1.555295e-49 | -8.615850e-47 |
Msa0089010 | Msa1296680 | 0.814697 | 1.350230e-51 | -8.615850e-47 |
Msa0099090 | Msa1296680 | 0.808863 | 2.512531e-50 | -8.615850e-47 |
Msa0120320 | Msa1296680 | 0.836834 | 7.418158e-57 | -8.615850e-47 |
Msa0608940 | Msa1296680 | 0.805886 | 1.074798e-49 | -8.615850e-47 |
Msa0612880 | Msa1296680 | 0.802209 | 6.253747e-49 | -8.615850e-47 |
Msa0615430 | Msa1296680 | 0.818690 | 1.718559e-52 | -8.615850e-47 |
Msa0621670 | Msa1296680 | 0.821069 | 4.912451e-53 | -8.615850e-47 |
Msa0647860 | Msa1296680 | 0.813842 | 2.085246e-51 | -8.615850e-47 |
Msa0648160 | Msa1296680 | 0.800122 | 1.671308e-48 | -8.615850e-47 |
Msa0648260 | Msa1296680 | 0.802557 | 5.303028e-49 | -8.615850e-47 |
Msa0649530 | Msa1296680 | 0.812005 | 5.270234e-51 | -8.615850e-47 |
Msa0671070 | Msa1296680 | 0.822227 | 2.651178e-53 | -8.615850e-47 |
Msa0691740 | Msa1296680 | 0.816631 | 5.007322e-52 | -8.615850e-47 |
Msa0698480 | Msa1296680 | 0.813003 | 3.188230e-51 | -8.615850e-47 |
Msa0698650 | Msa1296680 | 0.803865 | 2.842683e-49 | -8.615850e-47 |
Msa0754020 | Msa1296680 | 0.824014 | 1.015107e-53 | -8.615850e-47 |
Msa0754190 | Msa1296680 | 0.805448 | 1.328514e-49 | -8.615850e-47 |
Msa0807100 | Msa1296680 | 0.818098 | 2.340506e-52 | -8.615850e-47 |
Msa0833030 | Msa1296680 | 0.819233 | 1.293106e-52 | -8.615850e-47 |
Msa0147540 | Msa1296680 | 0.823226 | 1.552560e-53 | -8.615850e-47 |
Msa0147800 | Msa1296680 | 0.816773 | 4.651696e-52 | -8.615850e-47 |
Msa0163530 | Msa1296680 | 0.833599 | 4.860418e-56 | -8.615850e-47 |
Msa0180290 | Msa1296680 | 0.801046 | 1.083158e-48 | -8.615850e-47 |
Msa0218430 | Msa1296680 | 0.821018 | 5.045534e-53 | -8.615850e-47 |
Msa0225070 | Msa1296680 | 0.812328 | 4.480603e-51 | -8.615850e-47 |
Msa0236690 | Msa1296680 | 0.810788 | 9.682775e-51 | -8.615850e-47 |
Msa1225140 | Msa1296680 | 0.803656 | 3.141624e-49 | -8.615850e-47 |
Msa1235940 | Msa1296680 | 0.849049 | 4.148960e-60 | -8.615850e-47 |
Msa1251500 | Msa1296680 | -0.802940 | 4.419223e-49 | -8.615850e-47 |
Msa1256430 | Msa1296680 | 0.945971 | 1.121366e-104 | -8.615850e-47 |
Msa1277580 | Msa1296680 | 0.859180 | 4.941779e-63 | -8.615850e-47 |
Msa1279320 | Msa1296680 | 0.829510 | 4.944017e-55 | -8.615850e-47 |
Msa1296680 | Msa1323260 | 0.810740 | 9.917842e-51 | -8.615850e-47 |
Msa1296680 | Msa1343450 | 0.800291 | 1.543906e-48 | -8.615850e-47 |
Msa1296680 | Msa1346220 | 0.800837 | 1.194736e-48 | -8.615850e-47 |
Msa1296680 | Msa1348860 | 0.814865 | 1.238909e-51 | -8.615850e-47 |
Msa1296680 | Msa1371060 | 0.811191 | 7.919645e-51 | -8.615850e-47 |
Msa1296680 | Msa1372190 | 0.801447 | 8.965933e-49 | -8.615850e-47 |
Msa1296680 | Msa1376010 | 0.801965 | 7.018804e-49 | -8.615850e-47 |
Msa1296680 | Msa1384410 | 0.816205 | 6.236038e-52 | -8.615850e-47 |
Msa1296680 | Msa1394810 | 0.816044 | 6.774336e-52 | -8.615850e-47 |
Msa1296680 | Msa1408860 | 0.821219 | 4.536435e-53 | -8.615850e-47 |
Msa1296680 | Msa1412270 | 0.811585 | 6.506082e-51 | -8.615850e-47 |
Msa1296680 | Msa1412740 | 0.802632 | 5.116758e-49 | -8.615850e-47 |
Msa1296680 | Msa1414780 | 0.803345 | 3.643450e-49 | -8.615850e-47 |
Msa1296680 | Msa1422150 | 0.835719 | 1.424702e-56 | -8.615850e-47 |
Msa1296680 | Msa1422160 | 0.824440 | 8.064404e-54 | -8.615850e-47 |
Msa1296680 | Msa1436660 | 0.802697 | 4.959788e-49 | -8.615850e-47 |
Msa1296680 | Msa1450780 | 0.829236 | 5.762336e-55 | -8.615850e-47 |
Msa1296680 | Msa1460530 | 0.841067 | 5.950051e-58 | -8.615850e-47 |
Msa0367590 | Msa1296680 | 0.800092 | 1.694508e-48 | -8.615850e-47 |
Msa0451710 | Msa1296680 | 0.821490 | 3.928303e-53 | -8.615850e-47 |
Msa0452120 | Msa1296680 | 0.809532 | 1.806010e-50 | -8.615850e-47 |
Msa0452180 | Msa1296680 | 0.805477 | 1.309921e-49 | -8.615850e-47 |
Msa0452490 | Msa1296680 | 0.807426 | 5.083469e-50 | -8.615850e-47 |
Msa0987670 | Msa1296680 | -0.809759 | 1.614241e-50 | -8.615850e-47 |
Msa1009150 | Msa1296680 | 0.818406 | 1.992640e-52 | -8.615850e-47 |
Msa1009160 | Msa1296680 | 0.805943 | 1.045622e-49 | -8.615850e-47 |
Msa1009240 | Msa1296680 | 0.800492 | 1.405385e-48 | -8.615850e-47 |
Msa1031530 | Msa1296680 | 0.815121 | 1.087183e-51 | -8.615850e-47 |
Msa1050540 | Msa1296680 | 0.825307 | 5.033546e-54 | -8.615850e-47 |
Msa1050640 | Msa1296680 | 0.808234 | 3.423078e-50 | -8.615850e-47 |
Msa1070630 | Msa1296680 | 0.815690 | 8.124389e-52 | -8.615850e-47 |
Msa1078590 | Msa1296680 | 0.819904 | 9.090426e-53 | -8.615850e-47 |
Msa1078760 | Msa1296680 | 0.813622 | 2.331917e-51 | -8.615850e-47 |
Msa1093190 | Msa1296680 | 0.800425 | 1.449842e-48 | -8.615850e-47 |
Msa1098340 | Msa1296680 | 0.800064 | 1.717517e-48 | -8.615850e-47 |
Msa1098350 | Msa1296680 | 0.821132 | 4.749309e-53 | -8.615850e-47 |
Msa0240590 | Msa1296680 | 0.823948 | 1.052202e-53 | -8.615850e-47 |
Msa0266140 | Msa1296680 | 0.811506 | 6.768332e-51 | -8.615850e-47 |
Msa0279090 | Msa1296680 | 0.823536 | 1.313558e-53 | -8.615850e-47 |
Msa0297270 | Msa1296680 | 0.819954 | 8.856199e-53 | -8.615850e-47 |
Msa0304060 | Msa1296680 | 0.819320 | 1.235768e-52 | -8.615850e-47 |
Msa0360130 | Msa1296680 | 0.803185 | 3.932614e-49 | -8.615850e-47 |
Msa1128780 | Msa1296680 | 0.804800 | 1.815097e-49 | -8.615850e-47 |
Msa1138440 | Msa1296680 | 0.821262 | 4.432773e-53 | -8.615850e-47 |
Msa1138480 | Msa1296680 | 0.800517 | 1.388846e-48 | -8.615850e-47 |
Msa1138490 | Msa1296680 | 0.832880 | 7.344036e-56 | -8.615850e-47 |
Msa1143860 | Msa1296680 | 0.802061 | 6.706147e-49 | -8.615850e-47 |
Msa1158450 | Msa1296680 | 0.814572 | 1.438837e-51 | -8.615850e-47 |
Msa1169590 | Msa1296680 | 0.812480 | 4.150647e-51 | -8.615850e-47 |
Msa1175850 | Msa1296680 | 0.854052 | 1.590960e-61 | -8.615850e-47 |
Msa1204470 | Msa1296680 | 0.932527 | 7.452089e-95 | -8.615850e-47 |
Msa0517460 | Msa1296680 | 0.820175 | 7.878800e-53 | -8.615850e-47 |
Msa0538050 | Msa1296680 | 0.809859 | 1.536104e-50 | -8.615850e-47 |
Msa0561420 | Msa1296680 | 0.801424 | 9.062937e-49 | -8.615850e-47 |
Msa0565150 | Msa1296680 | 0.805322 | 1.411478e-49 | -8.615850e-47 |
Msa0592400 | Msa1296680 | 0.827372 | 1.622065e-54 | -8.615850e-47 |
Msa0852090 | Msa1296680 | 0.810399 | 1.175103e-50 | -8.615850e-47 |
Msa0862230 | Msa1296680 | 0.804227 | 2.389968e-49 | -8.615850e-47 |
Msa0884300 | Msa1296680 | 0.804029 | 2.628049e-49 | -8.615850e-47 |
Msa0907170 | Msa1296680 | -0.804604 | 1.994886e-49 | -8.615850e-47 |
Msa0925630 | Msa1296680 | 0.805049 | 1.610569e-49 | -8.615850e-47 |
Msa0931550 | Msa1296680 | 0.821478 | 3.952699e-53 | -8.615850e-47 |
Msa0949550 | Msa1296680 | 0.811023 | 8.613494e-51 | -8.615850e-47 |
Msa0967900 | Msa1296680 | 0.814139 | 1.794069e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1296680 | MtrunA17_Chr4g0053521 | 68.882 | 331 | 67 | 5 | 1 | 304 | 104 | 425 | 4.60e-134 | 424 |
Msa1296680 | MtrunA17_Chr4g0053521 | 71.480 | 277 | 76 | 2 | 304 | 578 | 25 | 300 | 5.32e-117 | 378 |
Msa1296680 | MtrunA17_Chr4g0053521 | 70.036 | 277 | 80 | 3 | 304 | 578 | 582 | 857 | 7.34e-114 | 369 |
Msa1296680 | MtrunA17_Chr4g0053521 | 62.701 | 311 | 77 | 6 | 1 | 283 | 660 | 959 | 1.20e-108 | 355 |
Msa1296680 | MtrunA17_Chr4g0053571 | 71.583 | 278 | 75 | 4 | 304 | 578 | 26 | 302 | 1.70e-122 | 381 |
Msa1296680 | MtrunA17_Chr4g0053571 | 62.037 | 324 | 81 | 7 | 1 | 295 | 104 | 414 | 2.11e-116 | 365 |
Msa1296680 | MtrunA17_Chr4g0053561 | 67.636 | 275 | 88 | 1 | 304 | 578 | 25 | 298 | 1.26e-114 | 359 |
Msa1296680 | MtrunA17_Chr4g0053561 | 56.211 | 322 | 84 | 5 | 1 | 295 | 102 | 393 | 6.72e-100 | 320 |
Msa1296680 | MtrunA17_Chr4g0053601 | 60.625 | 160 | 36 | 2 | 73 | 205 | 1 | 160 | 6.35e-59 | 193 |
Msa1296680 | MtrunA17_Chr4g0053601 | 66.667 | 126 | 41 | 1 | 453 | 578 | 1 | 125 | 1.77e-49 | 168 |
Msa1296680 | MtrunA17_Chr4g0053611 | 71.429 | 119 | 30 | 1 | 300 | 414 | 22 | 140 | 8.81e-41 | 144 |
Msa1296680 | MtrunA17_Chr1g0202711 | 33.333 | 327 | 181 | 10 | 1 | 304 | 120 | 432 | 1.47e-37 | 148 |
Msa1296680 | MtrunA17_Chr1g0202711 | 32.847 | 274 | 161 | 8 | 309 | 576 | 45 | 301 | 4.66e-30 | 125 |
Msa1296680 | MtrunA17_Chr6g0468691 | 33.435 | 329 | 180 | 11 | 2 | 304 | 104 | 419 | 2.37e-34 | 139 |
Msa1296680 | MtrunA17_Chr6g0468691 | 35.252 | 278 | 152 | 9 | 309 | 575 | 27 | 287 | 3.85e-28 | 119 |
Msa1296680 | MtrunA17_Chr2g0318301 | 35.667 | 300 | 164 | 11 | 2 | 283 | 105 | 393 | 9.57e-32 | 130 |
Msa1296680 | MtrunA17_Chr2g0318301 | 32.075 | 265 | 161 | 6 | 305 | 566 | 27 | 275 | 2.75e-21 | 98.6 |
Msa1296680 | MtrunA17_Chr4g0061081 | 34.219 | 301 | 163 | 11 | 2 | 277 | 119 | 409 | 2.44e-31 | 129 |
Msa1296680 | MtrunA17_Chr4g0061081 | 32.971 | 276 | 150 | 6 | 311 | 569 | 38 | 295 | 8.46e-27 | 115 |
Msa1296680 | MtrunA17_Chr4g0030441 | 35.052 | 291 | 160 | 10 | 2 | 273 | 111 | 391 | 3.23e-30 | 126 |
Msa1296680 | MtrunA17_Chr4g0030441 | 34.328 | 268 | 148 | 8 | 309 | 567 | 32 | 280 | 1.11e-25 | 112 |
Msa1296680 | MtrunA17_Chr8g0361611 | 33.435 | 329 | 192 | 12 | 2 | 317 | 109 | 423 | 6.18e-30 | 125 |
Msa1296680 | MtrunA17_Chr8g0361611 | 31.636 | 275 | 148 | 6 | 309 | 572 | 33 | 278 | 1.58e-26 | 114 |
Msa1296680 | MtrunA17_Chr7g0248161 | 32.881 | 295 | 169 | 11 | 2 | 273 | 101 | 389 | 5.48e-29 | 120 |
Msa1296680 | MtrunA17_Chr7g0248161 | 32.353 | 272 | 154 | 9 | 309 | 570 | 29 | 280 | 4.02e-25 | 108 |
Msa1296680 | MtrunA17_Chr2g0327671 | 34.323 | 303 | 168 | 11 | 2 | 283 | 110 | 402 | 7.58e-28 | 119 |
Msa1296680 | MtrunA17_Chr2g0327671 | 36.194 | 268 | 141 | 9 | 309 | 567 | 32 | 278 | 1.30e-26 | 115 |
Msa1296680 | MtrunA17_Chr8g0352381 | 31.399 | 293 | 172 | 11 | 2 | 273 | 137 | 421 | 7.50e-25 | 109 |
Msa1296680 | MtrunA17_Chr8g0352381 | 29.699 | 266 | 172 | 6 | 308 | 571 | 62 | 314 | 1.28e-22 | 102 |
Msa1296680 | MtrunA17_Chr4g0053591 | 66.667 | 78 | 24 | 1 | 230 | 307 | 1 | 76 | 6.20e-21 | 96.3 |
Msa1296680 | MtrunA17_Chr1g0190581 | 32.862 | 283 | 152 | 13 | 300 | 570 | 28 | 284 | 1.24e-20 | 96.3 |
Msa1296680 | MtrunA17_Chr1g0190581 | 26.885 | 305 | 179 | 13 | 2 | 273 | 102 | 395 | 1.18e-12 | 70.9 |
Msa1296680 | MtrunA17_Chr1g0165521 | 29.098 | 244 | 142 | 8 | 49 | 273 | 137 | 368 | 2.53e-20 | 95.5 |
Msa1296680 | MtrunA17_Chr1g0165521 | 25.952 | 289 | 147 | 12 | 302 | 573 | 26 | 264 | 2.63e-11 | 66.6 |
Msa1296680 | MtrunA17_Chr2g0292501 | 29.310 | 290 | 154 | 10 | 308 | 570 | 27 | 292 | 9.85e-20 | 93.6 |
Msa1296680 | MtrunA17_Chr2g0292501 | 27.666 | 347 | 211 | 12 | 2 | 315 | 105 | 444 | 7.90e-18 | 87.4 |
Msa1296680 | MtrunA17_Chr5g0420151 | 32.130 | 277 | 147 | 14 | 313 | 566 | 36 | 294 | 2.00e-19 | 92.4 |
Msa1296680 | MtrunA17_Chr5g0420151 | 25.205 | 365 | 205 | 14 | 2 | 302 | 113 | 473 | 8.93e-15 | 77.8 |
Msa1296680 | MtrunA17_Chr5g0420171 | 30.249 | 281 | 147 | 13 | 313 | 566 | 36 | 294 | 2.39e-18 | 89.0 |
Msa1296680 | MtrunA17_Chr7g0274261 | 32.877 | 219 | 120 | 8 | 358 | 566 | 89 | 290 | 3.27e-18 | 89.0 |
Msa1296680 | MtrunA17_Chr7g0245131 | 26.708 | 322 | 179 | 13 | 2 | 278 | 105 | 414 | 7.83e-17 | 84.3 |
Msa1296680 | MtrunA17_Chr7g0245131 | 27.986 | 293 | 171 | 12 | 294 | 566 | 14 | 286 | 1.82e-15 | 80.1 |
Msa1296680 | MtrunA17_Chr5g0420181 | 27.703 | 296 | 164 | 15 | 20 | 276 | 123 | 407 | 1.46e-12 | 70.9 |
Msa1296680 | MtrunA17_Chr7g0219671 | 28.136 | 295 | 180 | 12 | 295 | 566 | 24 | 309 | 4.76e-12 | 68.9 |
Msa1296680 | MtrunA17_Chr4g0025961 | 28.522 | 291 | 148 | 16 | 313 | 566 | 38 | 305 | 3.77e-11 | 66.2 |
Msa1296680 | MtrunA17_Chr7g0219591 | 28.041 | 296 | 175 | 14 | 295 | 566 | 24 | 305 | 8.67e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1296680 | AT5G24010.1 | 34.336 | 399 | 205 | 14 | 2 | 367 | 107 | 481 | 4.46e-43 | 165 |
Msa1296680 | AT5G24010.1 | 34.507 | 284 | 142 | 10 | 309 | 575 | 30 | 286 | 6.55e-24 | 107 |
Msa1296680 | AT2G23200.1 | 35.714 | 308 | 166 | 11 | 2 | 294 | 112 | 402 | 6.84e-37 | 147 |
Msa1296680 | AT2G23200.1 | 32.979 | 282 | 145 | 8 | 305 | 574 | 33 | 282 | 2.04e-29 | 124 |
Msa1296680 | AT4G00300.1 | 32.246 | 276 | 167 | 8 | 309 | 576 | 29 | 292 | 7.89e-32 | 129 |
Msa1296680 | AT4G00300.1 | 32.258 | 310 | 168 | 13 | 1 | 278 | 104 | 403 | 3.09e-27 | 115 |
Msa1296680 | AT5G61350.1 | 33.993 | 303 | 160 | 11 | 2 | 278 | 112 | 400 | 5.49e-31 | 129 |
Msa1296680 | AT5G61350.1 | 31.111 | 270 | 156 | 10 | 309 | 567 | 32 | 282 | 1.24e-24 | 109 |
Msa1296680 | AT4G39110.1 | 31.561 | 301 | 162 | 13 | 2 | 273 | 131 | 416 | 7.33e-26 | 113 |
Msa1296680 | AT4G39110.1 | 28.986 | 276 | 169 | 6 | 304 | 570 | 51 | 308 | 1.24e-22 | 103 |
Msa1296680 | AT5G59700.1 | 35.808 | 229 | 120 | 8 | 304 | 525 | 24 | 232 | 8.68e-26 | 112 |
Msa1296680 | AT5G59700.1 | 33.447 | 293 | 161 | 12 | 2 | 273 | 100 | 379 | 1.04e-24 | 109 |
Msa1296680 | AT3G46290.1 | 32.881 | 295 | 171 | 11 | 2 | 278 | 100 | 385 | 2.17e-25 | 111 |
Msa1296680 | AT3G46290.1 | 34.513 | 226 | 132 | 7 | 300 | 523 | 20 | 231 | 3.93e-22 | 101 |
Msa1296680 | AT5G54380.1 | 30.523 | 344 | 197 | 11 | 2 | 315 | 105 | 436 | 7.73e-25 | 110 |
Msa1296680 | AT5G54380.1 | 33.835 | 266 | 154 | 6 | 305 | 565 | 26 | 274 | 8.18e-23 | 103 |
Msa1296680 | AT2G39360.1 | 31.461 | 267 | 147 | 10 | 306 | 565 | 26 | 263 | 1.58e-24 | 108 |
Msa1296680 | AT2G39360.1 | 29.043 | 303 | 164 | 14 | 1 | 273 | 99 | 380 | 6.52e-19 | 91.3 |
Msa1296680 | AT2G21480.1 | 31.229 | 301 | 163 | 14 | 2 | 273 | 130 | 415 | 8.21e-24 | 107 |
Msa1296680 | AT2G21480.1 | 29.966 | 297 | 157 | 8 | 294 | 567 | 36 | 304 | 7.15e-23 | 103 |
Msa1296680 | AT5G39000.1 | 30.293 | 307 | 162 | 12 | 292 | 573 | 13 | 292 | 1.42e-21 | 99.8 |
Msa1296680 | AT5G39000.1 | 26.752 | 314 | 184 | 13 | 2 | 278 | 106 | 410 | 2.67e-18 | 89.4 |
Msa1296680 | AT5G39030.1 | 30.690 | 290 | 159 | 12 | 305 | 573 | 21 | 289 | 5.18e-20 | 94.7 |
Msa1296680 | AT5G39030.2 | 30.690 | 290 | 159 | 12 | 305 | 573 | 15 | 283 | 5.93e-20 | 94.7 |
Msa1296680 | AT5G39020.1 | 29.126 | 309 | 164 | 13 | 292 | 573 | 9 | 289 | 3.17e-19 | 92.4 |
Msa1296680 | AT1G30570.1 | 27.900 | 319 | 180 | 13 | 2 | 282 | 107 | 413 | 1.09e-18 | 90.9 |
Msa1296680 | AT1G30570.1 | 27.143 | 280 | 168 | 8 | 311 | 570 | 33 | 296 | 7.55e-18 | 88.2 |
Msa1296680 | AT5G28680.1 | 28.339 | 307 | 179 | 15 | 1 | 273 | 101 | 400 | 3.46e-14 | 76.3 |
Msa1296680 | AT5G28680.1 | 27.599 | 279 | 160 | 13 | 306 | 566 | 26 | 280 | 1.68e-12 | 70.9 |
Msa1296680 | AT5G28680.2 | 28.339 | 307 | 179 | 15 | 1 | 273 | 101 | 400 | 3.46e-14 | 76.3 |
Msa1296680 | AT5G28680.2 | 27.599 | 279 | 160 | 13 | 306 | 566 | 26 | 280 | 1.68e-12 | 70.9 |
Msa1296680 | AT3G51550.1 | 27.957 | 279 | 168 | 11 | 305 | 566 | 30 | 292 | 5.54e-14 | 75.9 |
Msa1296680 | AT3G51550.1 | 25.617 | 324 | 174 | 14 | 2 | 278 | 111 | 414 | 6.64e-14 | 75.5 |
Msa1296680 | AT5G38990.1 | 28.716 | 296 | 157 | 11 | 297 | 566 | 15 | 282 | 8.60e-13 | 72.0 |
Msa1296680 | AT3G04690.1 | 29.832 | 238 | 135 | 10 | 350 | 575 | 72 | 289 | 3.17e-12 | 70.1 |
Msa1296680 | AT3G04690.1 | 25.949 | 316 | 173 | 13 | 1 | 273 | 100 | 397 | 7.40e-12 | 68.9 |
Find 89 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATAAAGTATCAATATTTC+TGG | 0.166588 | 8_3:+56399273 | None:intergenic |
GTGGCGGTGGGTTCAGTTCT+TGG | 0.175080 | 8_3:-56401828 | Msa1296680:CDS |
TTTGCAATGGAAAGGTTATT+TGG | 0.199923 | 8_3:+56402815 | None:intergenic |
TTGATACTTTATCGAGAAAA+TGG | 0.216656 | 8_3:-56399264 | Msa1296680:CDS |
ATTTAAATTTGAATAATCTA+AGG | 0.226718 | 8_3:+56401872 | None:intergenic |
GTCGATACTTATCTAATTAT+AGG | 0.233175 | 8_3:-56399360 | Msa1296680:CDS |
TTGAACCGTTAACACTTTCT+TGG | 0.267645 | 8_3:+56402297 | None:intergenic |
GAAAGTAACAATGTTTATAT+TGG | 0.270669 | 8_3:-56399823 | Msa1296680:CDS |
GCAGTTTGATAAATAATATC+TGG | 0.290669 | 8_3:+56399118 | None:intergenic |
GCAACCTCAACCGACGTATT+AGG | 0.295301 | 8_3:+56401960 | None:intergenic |
TCGATACTTATCTAATTATA+GGG | 0.306393 | 8_3:-56399359 | Msa1296680:CDS |
CGTACCATGTAGGTGTTGTT+TGG | 0.333074 | 8_3:+56399664 | None:intergenic |
ACCACAAAATCATAATAATA+AGG | 0.333737 | 8_3:+56402023 | None:intergenic |
AAATTCAACGTTTCTGTTCC+CGG | 0.339246 | 8_3:-56399595 | Msa1296680:CDS |
GCAATATATTGATTTGAATC+TGG | 0.357246 | 8_3:+56399142 | None:intergenic |
GCAGTTCTATAAACAATATC+TGG | 0.358447 | 8_3:+56402320 | None:intergenic |
AATGGAAAATTCTTGCAGTT+TGG | 0.378288 | 8_3:+56399716 | None:intergenic |
TGAAGGCATTGATGATAGAT+TGG | 0.381625 | 8_3:+56399747 | None:intergenic |
GTGAAGAGAATGAAAAGAAA+TGG | 0.389396 | 8_3:+56399638 | None:intergenic |
CAAAAGGTTTAAACATAAGT+TGG | 0.398467 | 8_3:-56402277 | Msa1296680:CDS |
ACCGATGTTAAGACGGTGTT+TGG | 0.400439 | 8_3:+56402508 | None:intergenic |
AACGCTCAGAATGGTTCCTT+TGG | 0.410349 | 8_3:-56402407 | Msa1296680:CDS |
ACAAAATACTCGTTTACTAA+AGG | 0.411408 | 8_3:+56402725 | None:intergenic |
GAAAGTGTTAACGGTTCAAA+AGG | 0.414206 | 8_3:-56402293 | Msa1296680:CDS |
GTGAGGATAATGAAAAGAAA+TGG | 0.420905 | 8_3:+56402837 | None:intergenic |
TGTTCCTGTGGAGAACAATA+TGG | 0.421495 | 8_3:-56402252 | Msa1296680:CDS |
CAGTTTCTCCTCCGACGTTA+AGG | 0.429547 | 8_3:+56399299 | None:intergenic |
TTTGCAGTGGAAAGGTTAGT+TGG | 0.435305 | 8_3:+56399616 | None:intergenic |
AGTAAACTGGTACGAAGATT+CGG | 0.439498 | 8_3:+56399693 | None:intergenic |
ATTGAATCGCCCAATTGAAT+CGG | 0.443574 | 8_3:+56399399 | None:intergenic |
GAATCGGGGATTAAAAGAAC+AGG | 0.444089 | 8_3:+56399415 | None:intergenic |
TGAACCGTTAACACTTTCTT+GGG | 0.445843 | 8_3:+56402298 | None:intergenic |
GTACCATGTAGGTGTTGTTT+GGG | 0.451814 | 8_3:+56399665 | None:intergenic |
TTGAATCGCCCAATTGAATC+GGG | 0.457093 | 8_3:+56399400 | None:intergenic |
GCTCAGAATGGTTCCTTTGG+AGG | 0.459647 | 8_3:-56402404 | Msa1296680:CDS |
AATTAGTCTTCCCGTGGCGG+TGG | 0.461909 | 8_3:-56401841 | Msa1296680:CDS |
ATGAAAGTGATTGAATCATC+AGG | 0.467590 | 8_3:-56401903 | Msa1296680:CDS |
ACAATATGGATCATTTCCTT+AGG | 0.471274 | 8_3:-56402238 | Msa1296680:CDS |
CGATGGCTCAGGACCATTGA+AGG | 0.473301 | 8_3:-56401994 | Msa1296680:CDS |
ACTGCCCAAGAAAGTGTTAA+CGG | 0.474271 | 8_3:-56402302 | Msa1296680:CDS |
AATTGATGAAGTATATATCT+TGG | 0.474802 | 8_3:+56399869 | None:intergenic |
CGGTTTACTCTCACGAGCAT+TGG | 0.475082 | 8_3:-56402534 | Msa1296680:CDS |
TTGATAACTTATCGAGAAAG+TGG | 0.478174 | 8_3:-56402463 | Msa1296680:CDS |
TTCAATTACAACGATTCTAC+TGG | 0.479886 | 8_3:-56399382 | Msa1296680:CDS |
TTAGTTATATAACTGTCATC+TGG | 0.485112 | 8_3:+56402437 | None:intergenic |
TTTAAATTTGAATAATCTAA+GGG | 0.488809 | 8_3:+56401873 | None:intergenic |
GCAGTTTGGTAGAGAGATGA+AGG | 0.490787 | 8_3:+56399730 | None:intergenic |
TGTTTGGGAAGGTAGTAAAC+TGG | 0.492724 | 8_3:+56399680 | None:intergenic |
AATGACAGTGATCAACAATC+TGG | 0.497976 | 8_3:-56402125 | Msa1296680:CDS |
TTAGTTATATAAATGTCATC+TGG | 0.498378 | 8_3:+56399238 | None:intergenic |
AGTACCTAATACGTCGGTTG+AGG | 0.502642 | 8_3:-56401964 | Msa1296680:CDS |
GGTACTACGCTAACCTTCAA+TGG | 0.503918 | 8_3:+56401981 | None:intergenic |
CTCGTTTACTAAAGGAGAGT+TGG | 0.515800 | 8_3:+56402733 | None:intergenic |
CTTCCCAAACAACACCTACA+TGG | 0.519905 | 8_3:-56399668 | Msa1296680:CDS |
AGAACTGAACCCACCGCCAC+GGG | 0.529345 | 8_3:+56401831 | None:intergenic |
CTTCAATGGTCCTGAGCCAT+CGG | 0.534736 | 8_3:+56401995 | None:intergenic |
TTGATTTGAATCTGGACCAT+CGG | 0.556569 | 8_3:+56399150 | None:intergenic |
AATGCGAATGATGATGTTTG+AGG | 0.558071 | 8_3:+56402665 | None:intergenic |
CATGTAGGTGTTGTTTGGGA+AGG | 0.568609 | 8_3:+56399669 | None:intergenic |
ATTAGTCTTCCCGTGGCGGT+GGG | 0.569534 | 8_3:-56401840 | Msa1296680:CDS |
AACCCACAAAACGCTCAGAA+TGG | 0.570988 | 8_3:-56402416 | Msa1296680:CDS |
AATGGAAAGGTTATTTGGTG+AGG | 0.571174 | 8_3:+56402820 | None:intergenic |
GTTTACTAAAGGAGAGTTGG+TGG | 0.573190 | 8_3:+56402736 | None:intergenic |
TACTTATCTAATTATAGGGG+CGG | 0.573305 | 8_3:-56399355 | Msa1296680:CDS |
TGATCCATATTGTTCTCCAC+AGG | 0.576270 | 8_3:+56402248 | None:intergenic |
GATATATACTTCATCAATTG+CGG | 0.585250 | 8_3:-56399865 | Msa1296680:CDS |
ACTGGTACGAAGATTCGGAA+TGG | 0.590962 | 8_3:+56399698 | None:intergenic |
GCGGTGGGTTCAGTTCTTGG+AGG | 0.597295 | 8_3:-56401825 | Msa1296680:intron |
GCGTTTAATATCACCTCCAA+AGG | 0.601330 | 8_3:+56402391 | None:intergenic |
CATAAGTTGGAGTGTTCCTG+TGG | 0.604966 | 8_3:-56402264 | Msa1296680:CDS |
CGATACTTATCTAATTATAG+GGG | 0.612644 | 8_3:-56399358 | Msa1296680:CDS |
GAAATGGAAACGTACCATGT+AGG | 0.613092 | 8_3:+56399654 | None:intergenic |
AAGAACTGAACCCACCGCCA+CGG | 0.614054 | 8_3:+56401830 | None:intergenic |
TTTCACCACCGATGTTAAGA+CGG | 0.619305 | 8_3:+56402501 | None:intergenic |
GAAAATTAGTCTTCCCGTGG+CGG | 0.620200 | 8_3:-56401844 | Msa1296680:CDS |
GGCTTATCTACTTACAGTGG+CGG | 0.632917 | 8_3:-56402554 | Msa1296680:CDS |
TATAGCATTAACAAACGCGA+AGG | 0.635159 | 8_3:+56399453 | None:intergenic |
TTTCTCCTCCGACGTTAAGG+CGG | 0.638143 | 8_3:+56399302 | None:intergenic |
ACCAAACACCGTCTTAACAT+CGG | 0.638754 | 8_3:-56402509 | Msa1296680:CDS |
GAAGAAAATTAGTCTTCCCG+TGG | 0.647377 | 8_3:-56401847 | Msa1296680:CDS |
ACAAAACACCGCCTTAACGT+CGG | 0.655567 | 8_3:-56399310 | Msa1296680:CDS |
TGAATCGCCCAATTGAATCG+GGG | 0.666832 | 8_3:+56399401 | None:intergenic |
CAAGGCTTATCTACTTACAG+TGG | 0.669174 | 8_3:-56402557 | Msa1296680:intron |
AAACACCGCCTTAACGTCGG+AGG | 0.677354 | 8_3:-56399307 | Msa1296680:CDS |
TAGCGTAGTACCTAATACGT+CGG | 0.680013 | 8_3:-56401970 | Msa1296680:CDS |
AAACACCGTCTTAACATCGG+TGG | 0.683836 | 8_3:-56402506 | Msa1296680:CDS |
ACTGCAGATGATGAGTCCGA+TGG | 0.684779 | 8_3:-56399166 | Msa1296680:CDS |
AATCGGGGATTAAAAGAACA+GGG | 0.712103 | 8_3:+56399416 | None:intergenic |
ACTGCACATGATGAATCTGA+TGG | 0.714361 | 8_3:-56402368 | Msa1296680:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAATTTGAATAATCTAA+GGG | + | chr8_3:56400053-56400072 | None:intergenic | 10.0% |
!! | ATTTAAATTTGAATAATCTA+AGG | + | chr8_3:56400054-56400073 | None:intergenic | 10.0% |
!!! | CTTTTTTTTTTTTTTTTTTG+AGG | - | chr8_3:56400287-56400306 | Msa1296680:intron | 10.0% |
!! | TCAAAAAAAAAAAAATAGTT+CGG | - | chr8_3:56400843-56400862 | Msa1296680:intron | 10.0% |
!! | ATAAATATGAAAACAAAAAA+TGG | - | chr8_3:56400959-56400978 | Msa1296680:intron | 10.0% |
!!! | TTAATATACTTTTTGTAAAT+AGG | - | chr8_3:56401132-56401151 | Msa1296680:intron | 10.0% |
!!! | ATGTTATTTTGAATCTTTTT+CGG | + | chr8_3:56399233-56399252 | None:intergenic | 15.0% |
!! | TTTAATTATACTTTCTGTTA+TGG | - | chr8_3:56400121-56400140 | Msa1296680:intron | 15.0% |
!! | GATTAAACCATTTAATTATT+TGG | + | chr8_3:56401033-56401052 | None:intergenic | 15.0% |
!! | TTTGTGTTTATATTAGTATA+GGG | + | chr8_3:56401182-56401201 | None:intergenic | 15.0% |
!! | ATTATTATATTAAGTTCATC+TGG | - | chr8_3:56401653-56401672 | Msa1296680:intron | 15.0% |
!! | TTATTATATTAAGTTCATCT+GGG | - | chr8_3:56401654-56401673 | Msa1296680:intron | 15.0% |
!! | ACCACAAAATCATAATAATA+AGG | + | chr8_3:56399903-56399922 | None:intergenic | 20.0% |
!!! | AAACCAAATGCTTTTTTAAA+TGG | - | chr8_3:56399987-56400006 | Msa1296680:intron | 20.0% |
!!! | AACCAAATGCTTTTTTAAAT+GGG | - | chr8_3:56399988-56400007 | Msa1296680:intron | 20.0% |
!! | ATTCTCAATTGTAAGATTAA+TGG | - | chr8_3:56400235-56400254 | Msa1296680:intron | 20.0% |
!! | ATTTAAACACATTGTATGTA+GGG | + | chr8_3:56400367-56400386 | None:intergenic | 20.0% |
!! | TATTTAAACACATTGTATGT+AGG | + | chr8_3:56400368-56400387 | None:intergenic | 20.0% |
!! | AGTATAAATGTTGAATCATA+TGG | - | chr8_3:56400428-56400447 | Msa1296680:intron | 20.0% |
!! | TACACATCCAAATAATTAAA+TGG | - | chr8_3:56401023-56401042 | Msa1296680:intron | 20.0% |
!! | CTTTGTGTTTATATTAGTAT+AGG | + | chr8_3:56401183-56401202 | None:intergenic | 20.0% |
!! | ATCAACAATCTATTAATACT+TGG | + | chr8_3:56401460-56401479 | None:intergenic | 20.0% |
!! | ATAAAAACAGAAACAAACAA+TGG | - | chr8_3:56401777-56401796 | Msa1296680:intron | 20.0% |
!! | AATTGATGAAGTATATATCT+TGG | + | chr8_3:56402057-56402076 | None:intergenic | 20.0% |
!! | GAAAGTAACAATGTTTATAT+TGG | - | chr8_3:56402100-56402119 | Msa1296680:intron | 20.0% |
!! | TCGATACTTATCTAATTATA+GGG | - | chr8_3:56402564-56402583 | Msa1296680:intron | 20.0% |
!! | TTAGTTATATAAATGTCATC+TGG | + | chr8_3:56402688-56402707 | None:intergenic | 20.0% |
!!! | GCTCAAAATAGTTTATTTTT+TGG | - | chr8_3:56402718-56402737 | Msa1296680:CDS | 20.0% |
!!! | CAAAATAGTTTATTTTTTGG+AGG | - | chr8_3:56402721-56402740 | Msa1296680:CDS | 20.0% |
!!! | ATTTTTTAACAGAGAGAAAC+CGG | + | chr8_3:56399151-56399170 | None:intergenic | 25.0% |
! | ACAAAATACTCGTTTACTAA+AGG | + | chr8_3:56399201-56399220 | None:intergenic | 25.0% |
! | TTAGTTATATAACTGTCATC+TGG | + | chr8_3:56399489-56399508 | None:intergenic | 25.0% |
! | CAAAAGGTTTAAACATAAGT+TGG | - | chr8_3:56399646-56399665 | Msa1296680:CDS | 25.0% |
! | TGTCATAAAAATAAAGCCTA+AGG | + | chr8_3:56399704-56399723 | None:intergenic | 25.0% |
!!! | GCCTTATTATTATGATTTTG+TGG | - | chr8_3:56399899-56399918 | Msa1296680:intron | 25.0% |
! | AATTATACTTTCTGTTATGG+CGG | - | chr8_3:56400124-56400143 | Msa1296680:intron | 25.0% |
! | CAACATTTATACTATACTAC+AGG | + | chr8_3:56400421-56400440 | None:intergenic | 25.0% |
! | GAAAATGTTTACAGAAAAAG+AGG | + | chr8_3:56400584-56400603 | None:intergenic | 25.0% |
! | TGAATAGTTAAAAGTTAACC+GGG | + | chr8_3:56400761-56400780 | None:intergenic | 25.0% |
! | GTGAATAGTTAAAAGTTAAC+CGG | + | chr8_3:56400762-56400781 | None:intergenic | 25.0% |
! | GAAATTAATTAGACATGCAT+AGG | - | chr8_3:56400818-56400837 | Msa1296680:intron | 25.0% |
! | AGTAGAAGTTGTAATGTATA+TGG | + | chr8_3:56400924-56400943 | None:intergenic | 25.0% |
! | TTAAAGCAACCAAAATGAAA+AGG | + | chr8_3:56401587-56401606 | None:intergenic | 25.0% |
! | AAAGAAAAGACTTTGATAAG+TGG | + | chr8_3:56401855-56401874 | None:intergenic | 25.0% |
! | GATATATACTTCATCAATTG+CGG | - | chr8_3:56402058-56402077 | Msa1296680:intron | 25.0% |
!!! | ATCTTTTTTTAGGGTAAGTA+GGG | + | chr8_3:56402135-56402154 | None:intergenic | 25.0% |
!!! | AATCTTTTTTTAGGGTAAGT+AGG | + | chr8_3:56402136-56402155 | None:intergenic | 25.0% |
!!! | TGTTGCTGAATCTTTTTTTA+GGG | + | chr8_3:56402144-56402163 | None:intergenic | 25.0% |
! | GTCGATACTTATCTAATTAT+AGG | - | chr8_3:56402563-56402582 | Msa1296680:intron | 25.0% |
! | CGATACTTATCTAATTATAG+GGG | - | chr8_3:56402565-56402584 | Msa1296680:intron | 25.0% |
!! | CGATAAAGTATCAATATTTC+TGG | + | chr8_3:56402653-56402672 | None:intergenic | 25.0% |
! | TTGATACTTTATCGAGAAAA+TGG | - | chr8_3:56402659-56402678 | Msa1296680:CDS | 25.0% |
!!! | GCAATATATTGATTTGAATC+TGG | + | chr8_3:56402784-56402803 | None:intergenic | 25.0% |
! | GCAGTTTGATAAATAATATC+TGG | + | chr8_3:56402808-56402827 | None:intergenic | 25.0% |
GTGAGGATAATGAAAAGAAA+TGG | + | chr8_3:56399089-56399108 | None:intergenic | 30.0% | |
TTTGCAATGGAAAGGTTATT+TGG | + | chr8_3:56399111-56399130 | None:intergenic | 30.0% | |
! | GAAAACGTTGAATTTTGCAA+TGG | + | chr8_3:56399124-56399143 | None:intergenic | 30.0% |
!!! | TTTTTTAACAGAGAGAAACC+GGG | + | chr8_3:56399150-56399169 | None:intergenic | 30.0% |
TACAATAAATCTAGCGTTCA+AGG | - | chr8_3:56399348-56399367 | Msa1296680:CDS | 30.0% | |
! | TTGATAACTTATCGAGAAAG+TGG | - | chr8_3:56399460-56399479 | Msa1296680:CDS | 30.0% |
CCTATGTCTATAGTTGAATT+TGG | + | chr8_3:56399582-56399601 | None:intergenic | 30.0% | |
CCAAATTCAACTATAGACAT+AGG | - | chr8_3:56399579-56399598 | Msa1296680:CDS | 30.0% | |
GCAGTTCTATAAACAATATC+TGG | + | chr8_3:56399606-56399625 | None:intergenic | 30.0% | |
ACAATATGGATCATTTCCTT+AGG | - | chr8_3:56399685-56399704 | Msa1296680:CDS | 30.0% | |
!!! | ATTTTTAGTGATCGACAATC+TGG | - | chr8_3:56399723-56399742 | Msa1296680:CDS | 30.0% |
!! | AGCCCATTTAAAAAAGCATT+TGG | + | chr8_3:56399993-56400012 | None:intergenic | 30.0% |
ATGAAAGTGATTGAATCATC+AGG | - | chr8_3:56400020-56400039 | Msa1296680:intron | 30.0% | |
ATCTAAAAAAATAGCTCCTC+CGG | + | chr8_3:56400158-56400177 | None:intergenic | 30.0% | |
AGGAAGATTACTCTATAACA+GGG | + | chr8_3:56400564-56400583 | None:intergenic | 30.0% | |
!!! | ACCTTTGAACTATTTTTGAG+AGG | - | chr8_3:56400991-56401010 | Msa1296680:intron | 30.0% |
ACCTCTCAAAAATAGTTCAA+AGG | + | chr8_3:56400995-56401014 | None:intergenic | 30.0% | |
!!! | GTCTGCATTTTGTTTTGTAA+GGG | + | chr8_3:56401215-56401234 | None:intergenic | 30.0% |
!!! | TGTCTGCATTTTGTTTTGTA+AGG | + | chr8_3:56401216-56401235 | None:intergenic | 30.0% |
CAGTAAATGGAAACACAAAA+AGG | - | chr8_3:56401341-56401360 | Msa1296680:intron | 30.0% | |
! | ACTCTAATGCCTTTTCATTT+TGG | - | chr8_3:56401575-56401594 | Msa1296680:intron | 30.0% |
TAAAAAGTGATCGGATGATT+TGG | + | chr8_3:56401683-56401702 | None:intergenic | 30.0% | |
TTAGAAGTTAGAAGTAGTGA+GGG | + | chr8_3:56401883-56401902 | None:intergenic | 30.0% | |
!! | ATAGAGTGTTGAATTGCAAT+GGG | + | chr8_3:56401971-56401990 | None:intergenic | 30.0% |
GAAGAAGAAAAGCAAGTAAA+GGG | + | chr8_3:56401994-56402013 | None:intergenic | 30.0% | |
TGAAGAAGAAAAGCAAGTAA+AGG | + | chr8_3:56401995-56402014 | None:intergenic | 30.0% | |
!!! | CTGTTGCTGAATCTTTTTTT+AGG | + | chr8_3:56402145-56402164 | None:intergenic | 30.0% |
AATGGAAAATTCTTGCAGTT+TGG | + | chr8_3:56402210-56402229 | None:intergenic | 30.0% | |
GTGAAGAGAATGAAAAGAAA+TGG | + | chr8_3:56402288-56402307 | None:intergenic | 30.0% | |
! | ATTTTGTAACAGAGAGAAAC+CGG | + | chr8_3:56402350-56402369 | None:intergenic | 30.0% |
! | ACGTAGTACTCTTTTACTAA+AGG | + | chr8_3:56402400-56402419 | None:intergenic | 30.0% |
! | TGTGAAAGTGATTTTGAATC+TGG | + | chr8_3:56402437-56402456 | None:intergenic | 30.0% |
! | TTTTAATCCCCGATTCAATT+GGG | - | chr8_3:56402515-56402534 | Msa1296680:CDS | 30.0% |
TTCAATTACAACGATTCTAC+TGG | - | chr8_3:56402541-56402560 | Msa1296680:CDS | 30.0% | |
TACTTATCTAATTATAGGGG+CGG | - | chr8_3:56402568-56402587 | Msa1296680:intron | 30.0% | |
!! | AAACTATTTTGAGCGTTAAG+TGG | + | chr8_3:56402712-56402731 | None:intergenic | 30.0% |
ACTGCTAAAGAGAGTAAAAA+CGG | - | chr8_3:56402823-56402842 | Msa1296680:CDS | 30.0% | |
! | AATGGAAAGGTTATTTGGTG+AGG | + | chr8_3:56399106-56399125 | None:intergenic | 35.0% |
! | CGTTGAATTTTGCAATGGAA+AGG | + | chr8_3:56399119-56399138 | None:intergenic | 35.0% |
! | AAATTCAACGTTTTCGTTCC+CGG | - | chr8_3:56399129-56399148 | Msa1296680:CDS | 35.0% |
! | AATGCGAATGATGATGTTTG+AGG | + | chr8_3:56399261-56399280 | None:intergenic | 35.0% |
AATTGGGGATTAAATGACTG+GGG | + | chr8_3:56399311-56399330 | None:intergenic | 35.0% | |
GAATTGGGGATTAAATGACT+GGG | + | chr8_3:56399312-56399331 | None:intergenic | 35.0% | |
TGAATTGGGGATTAAATGAC+TGG | + | chr8_3:56399313-56399332 | None:intergenic | 35.0% | |
TGAAACGTGCAATTGAATTG+GGG | + | chr8_3:56399326-56399345 | None:intergenic | 35.0% | |
GTGAAACGTGCAATTGAATT+GGG | + | chr8_3:56399327-56399346 | None:intergenic | 35.0% | |
AGTGAAACGTGCAATTGAAT+TGG | + | chr8_3:56399328-56399347 | None:intergenic | 35.0% | |
TGAACCGTTAACACTTTCTT+GGG | + | chr8_3:56399628-56399647 | None:intergenic | 35.0% | |
TTGAACCGTTAACACTTTCT+TGG | + | chr8_3:56399629-56399648 | None:intergenic | 35.0% | |
!! | GAAAGTGTTAACGGTTCAAA+AGG | - | chr8_3:56399630-56399649 | Msa1296680:CDS | 35.0% |
AATGACAGTGATCAACAATC+TGG | - | chr8_3:56399798-56399817 | Msa1296680:CDS | 35.0% | |
AACTAAGGGGGAAAAATACA+AGG | + | chr8_3:56400201-56400220 | None:intergenic | 35.0% | |
! | GTATTTTTCCCCCTTAGTTA+TGG | - | chr8_3:56400202-56400221 | Msa1296680:intron | 35.0% |
AGACCAACAACCATAACTAA+GGG | + | chr8_3:56400215-56400234 | None:intergenic | 35.0% | |
TAGACCAACAACCATAACTA+AGG | + | chr8_3:56400216-56400235 | None:intergenic | 35.0% | |
TAAACACATTGTATGTAGGG+TGG | + | chr8_3:56400364-56400383 | None:intergenic | 35.0% | |
GAGAGATGCACAAAATACAA+CGG | - | chr8_3:56400499-56400518 | Msa1296680:intron | 35.0% | |
GAGGAAGATTACTCTATAAC+AGG | + | chr8_3:56400565-56400584 | None:intergenic | 35.0% | |
! | TCTGTTTTCTTCATCTTTGC+TGG | - | chr8_3:56400640-56400659 | Msa1296680:intron | 35.0% |
AATAGTTCGGTTAAGACACT+AGG | - | chr8_3:56400856-56400875 | Msa1296680:intron | 35.0% | |
CTTTCAGAAGTTAAAAGGTG+TGG | + | chr8_3:56401310-56401329 | None:intergenic | 35.0% | |
!!! | CACACCTTTTAACTTCTGAA+AGG | - | chr8_3:56401308-56401327 | Msa1296680:intron | 35.0% |
! | TTGGCCTTTCAGAAGTTAAA+AGG | + | chr8_3:56401315-56401334 | None:intergenic | 35.0% |
TTGTGTTTCCATTTACTGCA+GGG | + | chr8_3:56401339-56401358 | None:intergenic | 35.0% | |
TTTGTGTTTCCATTTACTGC+AGG | + | chr8_3:56401340-56401359 | None:intergenic | 35.0% | |
GGAAACACAAAAAGGCTATA+AGG | - | chr8_3:56401349-56401368 | Msa1296680:intron | 35.0% | |
! | AAGGCTTACTTCAAGTTAAC+AGG | - | chr8_3:56401368-56401387 | Msa1296680:intron | 35.0% |
! | AGGCTTACTTCAAGTTAACA+GGG | - | chr8_3:56401369-56401388 | Msa1296680:intron | 35.0% |
TATTTATCCAGAAGATGCTG+TGG | + | chr8_3:56401632-56401651 | None:intergenic | 35.0% | |
CCTGTACGTTAAAAAGTGAT+CGG | + | chr8_3:56401692-56401711 | None:intergenic | 35.0% | |
!! | GGAAGTTGATTTTTCAACCA+TGG | + | chr8_3:56401745-56401764 | None:intergenic | 35.0% |
TAAGTGGAAGACTTTAGTTG+TGG | + | chr8_3:56401839-56401858 | None:intergenic | 35.0% | |
TAGAAGTTAGAAGTAGTGAG+GGG | + | chr8_3:56401882-56401901 | None:intergenic | 35.0% | |
CTTAGAAGTTAGAAGTAGTG+AGG | + | chr8_3:56401884-56401903 | None:intergenic | 35.0% | |
!! | TAGAGTGTTGAATTGCAATG+GGG | + | chr8_3:56401970-56401989 | None:intergenic | 35.0% |
!! | GATAGAGTGTTGAATTGCAA+TGG | + | chr8_3:56401972-56401991 | None:intergenic | 35.0% |
!! | TGAAGGCATTGATGATAGAT+TGG | + | chr8_3:56402179-56402198 | None:intergenic | 35.0% |
AGTAAACTGGTACGAAGATT+CGG | + | chr8_3:56402233-56402252 | None:intergenic | 35.0% | |
! | AGAAACGTTGAATTTTGCAG+TGG | + | chr8_3:56402323-56402342 | None:intergenic | 35.0% |
AAATTCAACGTTTCTGTTCC+CGG | - | chr8_3:56402328-56402347 | Msa1296680:intron | 35.0% | |
! | TTTTGTAACAGAGAGAAACC+GGG | + | chr8_3:56402349-56402368 | None:intergenic | 35.0% |
! | TTTTACTAAAGGAGACTTGG+TGG | + | chr8_3:56402389-56402408 | None:intergenic | 35.0% |
! | CTCTTTTACTAAAGGAGACT+TGG | + | chr8_3:56402392-56402411 | None:intergenic | 35.0% |
TATAGCATTAACAAACGCGA+AGG | + | chr8_3:56402473-56402492 | None:intergenic | 35.0% | |
AATCGGGGATTAAAAGAACA+GGG | + | chr8_3:56402510-56402529 | None:intergenic | 35.0% | |
! | CTTTTAATCCCCGATTCAAT+TGG | - | chr8_3:56402514-56402533 | Msa1296680:CDS | 35.0% |
ATTGAATCGCCCAATTGAAT+CGG | + | chr8_3:56402527-56402546 | None:intergenic | 35.0% | |
! | TTGATTTGAATCTGGACCAT+CGG | + | chr8_3:56402776-56402795 | None:intergenic | 35.0% |
GTTTACTAAAGGAGAGTTGG+TGG | + | chr8_3:56399190-56399209 | None:intergenic | 40.0% | |
CTCGTTTACTAAAGGAGAGT+TGG | + | chr8_3:56399193-56399212 | None:intergenic | 40.0% | |
CAAGGCTTATCTACTTACAG+TGG | - | chr8_3:56399366-56399385 | Msa1296680:CDS | 40.0% | |
ACCAAACACCGTCTTAACAT+CGG | - | chr8_3:56399414-56399433 | Msa1296680:CDS | 40.0% | |
TTTCACCACCGATGTTAAGA+CGG | + | chr8_3:56399425-56399444 | None:intergenic | 40.0% | |
! | AACCATTCTGAGCGTTTTGT+GGG | + | chr8_3:56399512-56399531 | None:intergenic | 40.0% |
GCGTTTAATATCACCTCCAA+AGG | + | chr8_3:56399535-56399554 | None:intergenic | 40.0% | |
ACTGCACATGATGAATCTGA+TGG | - | chr8_3:56399555-56399574 | Msa1296680:CDS | 40.0% | |
!! | ACTGCCCAAGAAAGTGTTAA+CGG | - | chr8_3:56399621-56399640 | Msa1296680:CDS | 40.0% |
TGTTCCTGTGGAGAACAATA+TGG | - | chr8_3:56399671-56399690 | Msa1296680:CDS | 40.0% | |
TGATCCATATTGTTCTCCAC+AGG | + | chr8_3:56399678-56399697 | None:intergenic | 40.0% | |
GCATCTGTTGTGACAAACTT+GGG | + | chr8_3:56399881-56399900 | None:intergenic | 40.0% | |
TAGCGTAGTACCTAATACGT+CGG | - | chr8_3:56399953-56399972 | Msa1296680:intron | 40.0% | |
!! | GAAGAAAATTAGTCTTCCCG+TGG | - | chr8_3:56400076-56400095 | Msa1296680:intron | 40.0% |
TAAAAAAATAGCTCCTCCGG+TGG | + | chr8_3:56400155-56400174 | None:intergenic | 40.0% | |
ACCAACAACCATAACTAAGG+GGG | + | chr8_3:56400213-56400232 | None:intergenic | 40.0% | |
GACCAACAACCATAACTAAG+GGG | + | chr8_3:56400214-56400233 | None:intergenic | 40.0% | |
AGATGCACAAAATACAACGG+TGG | - | chr8_3:56400502-56400521 | Msa1296680:intron | 40.0% | |
ATATTCTGACTACGAGCAAG+TGG | + | chr8_3:56400671-56400690 | None:intergenic | 40.0% | |
GGATCAATGTTCTCAGTGTT+AGG | + | chr8_3:56400740-56400759 | None:intergenic | 40.0% | |
AACACTGAGAACATTGATCC+CGG | - | chr8_3:56400740-56400759 | Msa1296680:intron | 40.0% | |
CACTCTCTAGATCTCTAAAC+TGG | - | chr8_3:56401052-56401071 | Msa1296680:intron | 40.0% | |
! | TACCTACATCTCTTGGTTTG+TGG | + | chr8_3:56401250-56401269 | None:intergenic | 40.0% |
ACAAACCAAGAGATGTAGGT+AGG | - | chr8_3:56401249-56401268 | Msa1296680:intron | 40.0% | |
TTTAACAACGATTCTCGAGC+AGG | + | chr8_3:56401279-56401298 | None:intergenic | 40.0% | |
! | GGCTTACTTCAAGTTAACAG+GGG | - | chr8_3:56401370-56401389 | Msa1296680:intron | 40.0% |
! | TTACTTCAAGTTAACAGGGG+AGG | - | chr8_3:56401373-56401392 | Msa1296680:intron | 40.0% |
ATCTCTGCTTTGTAGCAATC+TGG | + | chr8_3:56401401-56401420 | None:intergenic | 40.0% | |
GAGTGCAATTATCAATTCCC+AGG | + | chr8_3:56401559-56401578 | None:intergenic | 40.0% | |
!!! | CCGATCACTTTTTAACGTAC+AGG | - | chr8_3:56401689-56401708 | Msa1296680:intron | 40.0% |
TCATGTGTCAAGTAGTTCCA+TGG | - | chr8_3:56401725-56401744 | Msa1296680:intron | 40.0% | |
! | AAGACTTTAGTTGTGGACTG+TGG | + | chr8_3:56401832-56401851 | None:intergenic | 40.0% |
TGGAGATTGTATCCTAGTGA+GGG | + | chr8_3:56402037-56402056 | None:intergenic | 40.0% | |
TTGGAGATTGTATCCTAGTG+AGG | + | chr8_3:56402038-56402057 | None:intergenic | 40.0% | |
TGTTTGGGAAGGTAGTAAAC+TGG | + | chr8_3:56402246-56402265 | None:intergenic | 40.0% | |
!! | GTACCATGTAGGTGTTGTTT+GGG | + | chr8_3:56402261-56402280 | None:intergenic | 40.0% |
GAAATGGAAACGTACCATGT+AGG | + | chr8_3:56402272-56402291 | None:intergenic | 40.0% | |
TTTGCAGTGGAAAGGTTAGT+TGG | + | chr8_3:56402310-56402329 | None:intergenic | 40.0% | |
! | CGTTGAATTTTGCAGTGGAA+AGG | + | chr8_3:56402318-56402337 | None:intergenic | 40.0% |
! | AACGCGAAGGATAAGTTTTG+AGG | + | chr8_3:56402460-56402479 | None:intergenic | 40.0% |
GAATCGGGGATTAAAAGAAC+AGG | + | chr8_3:56402511-56402530 | None:intergenic | 40.0% | |
TTGAATCGCCCAATTGAATC+GGG | + | chr8_3:56402526-56402545 | None:intergenic | 40.0% | |
GGCTTATCTACTTACAGTGG+CGG | - | chr8_3:56399369-56399388 | Msa1296680:CDS | 45.0% | |
ACCGATGTTAAGACGGTGTT+TGG | + | chr8_3:56399418-56399437 | None:intergenic | 45.0% | |
AAACACCGTCTTAACATCGG+TGG | - | chr8_3:56399417-56399436 | Msa1296680:CDS | 45.0% | |
AACCCACAAAACGCTCAGAA+TGG | - | chr8_3:56399507-56399526 | Msa1296680:CDS | 45.0% | |
! | GAACCATTCTGAGCGTTTTG+TGG | + | chr8_3:56399513-56399532 | None:intergenic | 45.0% |
AACGCTCAGAATGGTTCCTT+TGG | - | chr8_3:56399516-56399535 | Msa1296680:CDS | 45.0% | |
! | CATAAGTTGGAGTGTTCCTG+TGG | - | chr8_3:56399659-56399678 | Msa1296680:CDS | 45.0% |
GGCATCTGTTGTGACAAACT+TGG | + | chr8_3:56399882-56399901 | None:intergenic | 45.0% | |
! | GATTTTGTGGTTCGTTCCGA+TGG | - | chr8_3:56399912-56399931 | Msa1296680:intron | 45.0% |
GGTACTACGCTAACCTTCAA+TGG | + | chr8_3:56399945-56399964 | None:intergenic | 45.0% | |
! | AGTACCTAATACGTCGGTTG+AGG | - | chr8_3:56399959-56399978 | Msa1296680:intron | 45.0% |
!! | GAAAATTAGTCTTCCCGTGG+CGG | - | chr8_3:56400079-56400098 | Msa1296680:intron | 45.0% |
TCCCCCTTAGTTATGGTTGT+TGG | - | chr8_3:56400209-56400228 | Msa1296680:intron | 45.0% | |
ACACATTGTATGTAGGGTGG+AGG | + | chr8_3:56400361-56400380 | None:intergenic | 45.0% | |
TATGGTGAACACTTGTAGCC+TGG | - | chr8_3:56400446-56400465 | Msa1296680:intron | 45.0% | |
TGTGCATCTCTCTTTCTCTC+AGG | + | chr8_3:56400491-56400510 | None:intergenic | 45.0% | |
GCACAAAATACAACGGTGGA+TGG | - | chr8_3:56400506-56400525 | Msa1296680:intron | 45.0% | |
!! | CTCTTGGTTTGTGGCTTGTA+TGG | + | chr8_3:56401241-56401260 | None:intergenic | 45.0% |
AGCCACAAACCAAGAGATGT+AGG | - | chr8_3:56401245-56401264 | Msa1296680:intron | 45.0% | |
GATGACCTACCTACATCTCT+TGG | + | chr8_3:56401257-56401276 | None:intergenic | 45.0% | |
TTTCCATTTACTGCAGGGCT+TGG | + | chr8_3:56401334-56401353 | None:intergenic | 45.0% | |
TCATTCTCCACAGCATCTTC+TGG | - | chr8_3:56401622-56401641 | Msa1296680:intron | 45.0% | |
TTGAATTGCAATGGGGAGAG+AGG | + | chr8_3:56401963-56401982 | None:intergenic | 45.0% | |
GGAGATTGTATCCTAGTGAG+GGG | + | chr8_3:56402036-56402055 | None:intergenic | 45.0% | |
GCAGTTTGGTAGAGAGATGA+AGG | + | chr8_3:56402196-56402215 | None:intergenic | 45.0% | |
ACTGGTACGAAGATTCGGAA+TGG | + | chr8_3:56402228-56402247 | None:intergenic | 45.0% | |
!! | CATGTAGGTGTTGTTTGGGA+AGG | + | chr8_3:56402257-56402276 | None:intergenic | 45.0% |
CTTCCCAAACAACACCTACA+TGG | - | chr8_3:56402255-56402274 | Msa1296680:CDS | 45.0% | |
!! | CGTACCATGTAGGTGTTGTT+TGG | + | chr8_3:56402262-56402281 | None:intergenic | 45.0% |
TGAATCGCCCAATTGAATCG+GGG | + | chr8_3:56402525-56402544 | None:intergenic | 45.0% | |
ACAAAACACCGCCTTAACGT+CGG | - | chr8_3:56402613-56402632 | Msa1296680:intron | 45.0% | |
!!! | TTTTTTTTTTTTTTTTTTGA+GGG | - | chr8_3:56400288-56400307 | Msa1296680:intron | 5.0% |
!!! | TGTTTTTATTTTTAAAAATT+TGG | + | chr8_3:56401766-56401785 | None:intergenic | 5.0% |
CGGTTTACTCTCACGAGCAT+TGG | - | chr8_3:56399389-56399408 | Msa1296680:CDS | 50.0% | |
GCTCAGAATGGTTCCTTTGG+AGG | - | chr8_3:56399519-56399538 | Msa1296680:CDS | 50.0% | |
CTTCAATGGTCCTGAGCCAT+CGG | + | chr8_3:56399931-56399950 | None:intergenic | 50.0% | |
GCAACCTCAACCGACGTATT+AGG | + | chr8_3:56399966-56399985 | None:intergenic | 50.0% | |
TGTTATGGCGGTTTCTCCAC+CGG | - | chr8_3:56400136-56400155 | Msa1296680:intron | 50.0% | |
ATCCTTCACGAGTTGTTGCC+AGG | + | chr8_3:56400467-56400486 | None:intergenic | 50.0% | |
TCACTACAACTCCCCTCACT+AGG | - | chr8_3:56402022-56402041 | Msa1296680:CDS | 50.0% | |
TTTCTCCTCCGACGTTAAGG+CGG | + | chr8_3:56402624-56402643 | None:intergenic | 50.0% | |
CAGTTTCTCCTCCGACGTTA+AGG | + | chr8_3:56402627-56402646 | None:intergenic | 50.0% | |
ACTGCAGATGATGAGTCCGA+TGG | - | chr8_3:56402757-56402776 | Msa1296680:CDS | 50.0% | |
CGATGGCTCAGGACCATTGA+AGG | - | chr8_3:56399929-56399948 | Msa1296680:intron | 55.0% | |
!! | AATTAGTCTTCCCGTGGCGG+TGG | - | chr8_3:56400082-56400101 | Msa1296680:intron | 55.0% |
!! | ATTAGTCTTCCCGTGGCGGT+GGG | - | chr8_3:56400083-56400102 | Msa1296680:intron | 55.0% |
AAGAACTGAACCCACCGCCA+CGG | + | chr8_3:56400096-56400115 | None:intergenic | 55.0% | |
AGCCTGGCAACAACTCGTGA+AGG | - | chr8_3:56400462-56400481 | Msa1296680:intron | 55.0% | |
AGGCCAAGCCCTGCAGTAAA+TGG | - | chr8_3:56401328-56401347 | Msa1296680:intron | 55.0% | |
! | CAGGCACTGCAGTGTGTGAT+GGG | + | chr8_3:56401540-56401559 | None:intergenic | 55.0% |
CATCACACACTGCAGTGCCT+GGG | - | chr8_3:56401539-56401558 | Msa1296680:intron | 55.0% | |
CGGTTTACACTCTCGAGCGT+TGG | - | chr8_3:56402588-56402607 | Msa1296680:intron | 55.0% | |
AAACACCGCCTTAACGTCGG+AGG | - | chr8_3:56402616-56402635 | Msa1296680:intron | 55.0% | |
GTGGTTCGTTCCGATGGCTC+AGG | - | chr8_3:56399918-56399937 | Msa1296680:intron | 60.0% | |
AGAACTGAACCCACCGCCAC+GGG | + | chr8_3:56400095-56400114 | None:intergenic | 60.0% | |
! | GTGGCGGTGGGTTCAGTTCT+TGG | - | chr8_3:56400095-56400114 | Msa1296680:intron | 60.0% |
! | GCGGTGGGTTCAGTTCTTGG+AGG | - | chr8_3:56400098-56400117 | Msa1296680:intron | 60.0% |
TATGGCGGTTTCTCCACCGG+AGG | - | chr8_3:56400139-56400158 | Msa1296680:intron | 60.0% | |
! | CCAGGCACTGCAGTGTGTGA+TGG | + | chr8_3:56401541-56401560 | None:intergenic | 60.0% |
CCATCACACACTGCAGTGCC+TGG | - | chr8_3:56401538-56401557 | Msa1296680:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 56399075 | 56402870 | 56399075 | ID=Msa1296680;Name=Msa1296680 |
chr8_3 | mRNA | 56399075 | 56402870 | 56399075 | ID=Msa1296680-mRNA-1;Parent=Msa1296680;Name=Msa1296680-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|5|0|578 |
chr8_3 | exon | 56402633 | 56402870 | 56402633 | ID=Msa1296680-mRNA-1:exon:16192;Parent=Msa1296680-mRNA-1 |
chr8_3 | exon | 56402369 | 56402575 | 56402369 | ID=Msa1296680-mRNA-1:exon:16191;Parent=Msa1296680-mRNA-1 |
chr8_3 | exon | 56402103 | 56402344 | 56402103 | ID=Msa1296680-mRNA-1:exon:16190;Parent=Msa1296680-mRNA-1 |
chr8_3 | exon | 56401826 | 56402048 | 56401826 | ID=Msa1296680-mRNA-1:exon:16189;Parent=Msa1296680-mRNA-1 |
chr8_3 | exon | 56399075 | 56399901 | 56399075 | ID=Msa1296680-mRNA-1:exon:16188;Parent=Msa1296680-mRNA-1 |
chr8_3 | CDS | 56402633 | 56402870 | 56402633 | ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1 |
chr8_3 | CDS | 56402369 | 56402575 | 56402369 | ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1 |
chr8_3 | CDS | 56402103 | 56402344 | 56402103 | ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1 |
chr8_3 | CDS | 56401826 | 56402048 | 56401826 | ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1 |
chr8_3 | CDS | 56399075 | 56399901 | 56399075 | ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1 |
Gene Sequence |
Protein sequence |