AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296680 MtrunA17_Chr4g0053521 68.882 331 67 5 1 304 104 425 4.60e-134 424
Msa1296680 MtrunA17_Chr4g0053521 71.480 277 76 2 304 578 25 300 5.32e-117 378
Msa1296680 MtrunA17_Chr4g0053521 70.036 277 80 3 304 578 582 857 7.34e-114 369
Msa1296680 MtrunA17_Chr4g0053521 62.701 311 77 6 1 283 660 959 1.20e-108 355
Msa1296680 MtrunA17_Chr4g0053571 71.583 278 75 4 304 578 26 302 1.70e-122 381
Msa1296680 MtrunA17_Chr4g0053571 62.037 324 81 7 1 295 104 414 2.11e-116 365
Msa1296680 MtrunA17_Chr4g0053561 67.636 275 88 1 304 578 25 298 1.26e-114 359
Msa1296680 MtrunA17_Chr4g0053561 56.211 322 84 5 1 295 102 393 6.72e-100 320
Msa1296680 MtrunA17_Chr4g0053601 60.625 160 36 2 73 205 1 160 6.35e-59 193
Msa1296680 MtrunA17_Chr4g0053601 66.667 126 41 1 453 578 1 125 1.77e-49 168
Msa1296680 MtrunA17_Chr4g0053611 71.429 119 30 1 300 414 22 140 8.81e-41 144
Msa1296680 MtrunA17_Chr1g0202711 33.333 327 181 10 1 304 120 432 1.47e-37 148
Msa1296680 MtrunA17_Chr1g0202711 32.847 274 161 8 309 576 45 301 4.66e-30 125
Msa1296680 MtrunA17_Chr6g0468691 33.435 329 180 11 2 304 104 419 2.37e-34 139
Msa1296680 MtrunA17_Chr6g0468691 35.252 278 152 9 309 575 27 287 3.85e-28 119
Msa1296680 MtrunA17_Chr2g0318301 35.667 300 164 11 2 283 105 393 9.57e-32 130
Msa1296680 MtrunA17_Chr2g0318301 32.075 265 161 6 305 566 27 275 2.75e-21 98.6
Msa1296680 MtrunA17_Chr4g0061081 34.219 301 163 11 2 277 119 409 2.44e-31 129
Msa1296680 MtrunA17_Chr4g0061081 32.971 276 150 6 311 569 38 295 8.46e-27 115
Msa1296680 MtrunA17_Chr4g0030441 35.052 291 160 10 2 273 111 391 3.23e-30 126
Msa1296680 MtrunA17_Chr4g0030441 34.328 268 148 8 309 567 32 280 1.11e-25 112
Msa1296680 MtrunA17_Chr8g0361611 33.435 329 192 12 2 317 109 423 6.18e-30 125
Msa1296680 MtrunA17_Chr8g0361611 31.636 275 148 6 309 572 33 278 1.58e-26 114
Msa1296680 MtrunA17_Chr7g0248161 32.881 295 169 11 2 273 101 389 5.48e-29 120
Msa1296680 MtrunA17_Chr7g0248161 32.353 272 154 9 309 570 29 280 4.02e-25 108
Msa1296680 MtrunA17_Chr2g0327671 34.323 303 168 11 2 283 110 402 7.58e-28 119
Msa1296680 MtrunA17_Chr2g0327671 36.194 268 141 9 309 567 32 278 1.30e-26 115
Msa1296680 MtrunA17_Chr8g0352381 31.399 293 172 11 2 273 137 421 7.50e-25 109
Msa1296680 MtrunA17_Chr8g0352381 29.699 266 172 6 308 571 62 314 1.28e-22 102
Msa1296680 MtrunA17_Chr4g0053591 66.667 78 24 1 230 307 1 76 6.20e-21 96.3
Msa1296680 MtrunA17_Chr1g0190581 32.862 283 152 13 300 570 28 284 1.24e-20 96.3
Msa1296680 MtrunA17_Chr1g0190581 26.885 305 179 13 2 273 102 395 1.18e-12 70.9
Msa1296680 MtrunA17_Chr1g0165521 29.098 244 142 8 49 273 137 368 2.53e-20 95.5
Msa1296680 MtrunA17_Chr1g0165521 25.952 289 147 12 302 573 26 264 2.63e-11 66.6
Msa1296680 MtrunA17_Chr2g0292501 29.310 290 154 10 308 570 27 292 9.85e-20 93.6
Msa1296680 MtrunA17_Chr2g0292501 27.666 347 211 12 2 315 105 444 7.90e-18 87.4
Msa1296680 MtrunA17_Chr5g0420151 32.130 277 147 14 313 566 36 294 2.00e-19 92.4
Msa1296680 MtrunA17_Chr5g0420151 25.205 365 205 14 2 302 113 473 8.93e-15 77.8
Msa1296680 MtrunA17_Chr5g0420171 30.249 281 147 13 313 566 36 294 2.39e-18 89.0
Msa1296680 MtrunA17_Chr7g0274261 32.877 219 120 8 358 566 89 290 3.27e-18 89.0
Msa1296680 MtrunA17_Chr7g0245131 26.708 322 179 13 2 278 105 414 7.83e-17 84.3
Msa1296680 MtrunA17_Chr7g0245131 27.986 293 171 12 294 566 14 286 1.82e-15 80.1
Msa1296680 MtrunA17_Chr5g0420181 27.703 296 164 15 20 276 123 407 1.46e-12 70.9
Msa1296680 MtrunA17_Chr7g0219671 28.136 295 180 12 295 566 24 309 4.76e-12 68.9
Msa1296680 MtrunA17_Chr4g0025961 28.522 291 148 16 313 566 38 305 3.77e-11 66.2
Msa1296680 MtrunA17_Chr7g0219591 28.041 296 175 14 295 566 24 305 8.67e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296680 AT5G24010.1 34.336 399 205 14 2 367 107 481 4.46e-43 165
Msa1296680 AT5G24010.1 34.507 284 142 10 309 575 30 286 6.55e-24 107
Msa1296680 AT2G23200.1 35.714 308 166 11 2 294 112 402 6.84e-37 147
Msa1296680 AT2G23200.1 32.979 282 145 8 305 574 33 282 2.04e-29 124
Msa1296680 AT4G00300.1 32.246 276 167 8 309 576 29 292 7.89e-32 129
Msa1296680 AT4G00300.1 32.258 310 168 13 1 278 104 403 3.09e-27 115
Msa1296680 AT5G61350.1 33.993 303 160 11 2 278 112 400 5.49e-31 129
Msa1296680 AT5G61350.1 31.111 270 156 10 309 567 32 282 1.24e-24 109
Msa1296680 AT4G39110.1 31.561 301 162 13 2 273 131 416 7.33e-26 113
Msa1296680 AT4G39110.1 28.986 276 169 6 304 570 51 308 1.24e-22 103
Msa1296680 AT5G59700.1 35.808 229 120 8 304 525 24 232 8.68e-26 112
Msa1296680 AT5G59700.1 33.447 293 161 12 2 273 100 379 1.04e-24 109
Msa1296680 AT3G46290.1 32.881 295 171 11 2 278 100 385 2.17e-25 111
Msa1296680 AT3G46290.1 34.513 226 132 7 300 523 20 231 3.93e-22 101
Msa1296680 AT5G54380.1 30.523 344 197 11 2 315 105 436 7.73e-25 110
Msa1296680 AT5G54380.1 33.835 266 154 6 305 565 26 274 8.18e-23 103
Msa1296680 AT2G39360.1 31.461 267 147 10 306 565 26 263 1.58e-24 108
Msa1296680 AT2G39360.1 29.043 303 164 14 1 273 99 380 6.52e-19 91.3
Msa1296680 AT2G21480.1 31.229 301 163 14 2 273 130 415 8.21e-24 107
Msa1296680 AT2G21480.1 29.966 297 157 8 294 567 36 304 7.15e-23 103
Msa1296680 AT5G39000.1 30.293 307 162 12 292 573 13 292 1.42e-21 99.8
Msa1296680 AT5G39000.1 26.752 314 184 13 2 278 106 410 2.67e-18 89.4
Msa1296680 AT5G39030.1 30.690 290 159 12 305 573 21 289 5.18e-20 94.7
Msa1296680 AT5G39030.2 30.690 290 159 12 305 573 15 283 5.93e-20 94.7
Msa1296680 AT5G39020.1 29.126 309 164 13 292 573 9 289 3.17e-19 92.4
Msa1296680 AT1G30570.1 27.900 319 180 13 2 282 107 413 1.09e-18 90.9
Msa1296680 AT1G30570.1 27.143 280 168 8 311 570 33 296 7.55e-18 88.2
Msa1296680 AT5G28680.1 28.339 307 179 15 1 273 101 400 3.46e-14 76.3
Msa1296680 AT5G28680.1 27.599 279 160 13 306 566 26 280 1.68e-12 70.9
Msa1296680 AT5G28680.2 28.339 307 179 15 1 273 101 400 3.46e-14 76.3
Msa1296680 AT5G28680.2 27.599 279 160 13 306 566 26 280 1.68e-12 70.9
Msa1296680 AT3G51550.1 27.957 279 168 11 305 566 30 292 5.54e-14 75.9
Msa1296680 AT3G51550.1 25.617 324 174 14 2 278 111 414 6.64e-14 75.5
Msa1296680 AT5G38990.1 28.716 296 157 11 297 566 15 282 8.60e-13 72.0
Msa1296680 AT3G04690.1 29.832 238 135 10 350 575 72 289 3.17e-12 70.1
Msa1296680 AT3G04690.1 25.949 316 173 13 1 273 100 397 7.40e-12 68.9

Find 89 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAAAGTATCAATATTTC+TGG 0.166588 8_3:+56399273 None:intergenic
GTGGCGGTGGGTTCAGTTCT+TGG 0.175080 8_3:-56401828 Msa1296680:CDS
TTTGCAATGGAAAGGTTATT+TGG 0.199923 8_3:+56402815 None:intergenic
TTGATACTTTATCGAGAAAA+TGG 0.216656 8_3:-56399264 Msa1296680:CDS
ATTTAAATTTGAATAATCTA+AGG 0.226718 8_3:+56401872 None:intergenic
GTCGATACTTATCTAATTAT+AGG 0.233175 8_3:-56399360 Msa1296680:CDS
TTGAACCGTTAACACTTTCT+TGG 0.267645 8_3:+56402297 None:intergenic
GAAAGTAACAATGTTTATAT+TGG 0.270669 8_3:-56399823 Msa1296680:CDS
GCAGTTTGATAAATAATATC+TGG 0.290669 8_3:+56399118 None:intergenic
GCAACCTCAACCGACGTATT+AGG 0.295301 8_3:+56401960 None:intergenic
TCGATACTTATCTAATTATA+GGG 0.306393 8_3:-56399359 Msa1296680:CDS
CGTACCATGTAGGTGTTGTT+TGG 0.333074 8_3:+56399664 None:intergenic
ACCACAAAATCATAATAATA+AGG 0.333737 8_3:+56402023 None:intergenic
AAATTCAACGTTTCTGTTCC+CGG 0.339246 8_3:-56399595 Msa1296680:CDS
GCAATATATTGATTTGAATC+TGG 0.357246 8_3:+56399142 None:intergenic
GCAGTTCTATAAACAATATC+TGG 0.358447 8_3:+56402320 None:intergenic
AATGGAAAATTCTTGCAGTT+TGG 0.378288 8_3:+56399716 None:intergenic
TGAAGGCATTGATGATAGAT+TGG 0.381625 8_3:+56399747 None:intergenic
GTGAAGAGAATGAAAAGAAA+TGG 0.389396 8_3:+56399638 None:intergenic
CAAAAGGTTTAAACATAAGT+TGG 0.398467 8_3:-56402277 Msa1296680:CDS
ACCGATGTTAAGACGGTGTT+TGG 0.400439 8_3:+56402508 None:intergenic
AACGCTCAGAATGGTTCCTT+TGG 0.410349 8_3:-56402407 Msa1296680:CDS
ACAAAATACTCGTTTACTAA+AGG 0.411408 8_3:+56402725 None:intergenic
GAAAGTGTTAACGGTTCAAA+AGG 0.414206 8_3:-56402293 Msa1296680:CDS
GTGAGGATAATGAAAAGAAA+TGG 0.420905 8_3:+56402837 None:intergenic
TGTTCCTGTGGAGAACAATA+TGG 0.421495 8_3:-56402252 Msa1296680:CDS
CAGTTTCTCCTCCGACGTTA+AGG 0.429547 8_3:+56399299 None:intergenic
TTTGCAGTGGAAAGGTTAGT+TGG 0.435305 8_3:+56399616 None:intergenic
AGTAAACTGGTACGAAGATT+CGG 0.439498 8_3:+56399693 None:intergenic
ATTGAATCGCCCAATTGAAT+CGG 0.443574 8_3:+56399399 None:intergenic
GAATCGGGGATTAAAAGAAC+AGG 0.444089 8_3:+56399415 None:intergenic
TGAACCGTTAACACTTTCTT+GGG 0.445843 8_3:+56402298 None:intergenic
GTACCATGTAGGTGTTGTTT+GGG 0.451814 8_3:+56399665 None:intergenic
TTGAATCGCCCAATTGAATC+GGG 0.457093 8_3:+56399400 None:intergenic
GCTCAGAATGGTTCCTTTGG+AGG 0.459647 8_3:-56402404 Msa1296680:CDS
AATTAGTCTTCCCGTGGCGG+TGG 0.461909 8_3:-56401841 Msa1296680:CDS
ATGAAAGTGATTGAATCATC+AGG 0.467590 8_3:-56401903 Msa1296680:CDS
ACAATATGGATCATTTCCTT+AGG 0.471274 8_3:-56402238 Msa1296680:CDS
CGATGGCTCAGGACCATTGA+AGG 0.473301 8_3:-56401994 Msa1296680:CDS
ACTGCCCAAGAAAGTGTTAA+CGG 0.474271 8_3:-56402302 Msa1296680:CDS
AATTGATGAAGTATATATCT+TGG 0.474802 8_3:+56399869 None:intergenic
CGGTTTACTCTCACGAGCAT+TGG 0.475082 8_3:-56402534 Msa1296680:CDS
TTGATAACTTATCGAGAAAG+TGG 0.478174 8_3:-56402463 Msa1296680:CDS
TTCAATTACAACGATTCTAC+TGG 0.479886 8_3:-56399382 Msa1296680:CDS
TTAGTTATATAACTGTCATC+TGG 0.485112 8_3:+56402437 None:intergenic
TTTAAATTTGAATAATCTAA+GGG 0.488809 8_3:+56401873 None:intergenic
GCAGTTTGGTAGAGAGATGA+AGG 0.490787 8_3:+56399730 None:intergenic
TGTTTGGGAAGGTAGTAAAC+TGG 0.492724 8_3:+56399680 None:intergenic
AATGACAGTGATCAACAATC+TGG 0.497976 8_3:-56402125 Msa1296680:CDS
TTAGTTATATAAATGTCATC+TGG 0.498378 8_3:+56399238 None:intergenic
AGTACCTAATACGTCGGTTG+AGG 0.502642 8_3:-56401964 Msa1296680:CDS
GGTACTACGCTAACCTTCAA+TGG 0.503918 8_3:+56401981 None:intergenic
CTCGTTTACTAAAGGAGAGT+TGG 0.515800 8_3:+56402733 None:intergenic
CTTCCCAAACAACACCTACA+TGG 0.519905 8_3:-56399668 Msa1296680:CDS
AGAACTGAACCCACCGCCAC+GGG 0.529345 8_3:+56401831 None:intergenic
CTTCAATGGTCCTGAGCCAT+CGG 0.534736 8_3:+56401995 None:intergenic
TTGATTTGAATCTGGACCAT+CGG 0.556569 8_3:+56399150 None:intergenic
AATGCGAATGATGATGTTTG+AGG 0.558071 8_3:+56402665 None:intergenic
CATGTAGGTGTTGTTTGGGA+AGG 0.568609 8_3:+56399669 None:intergenic
ATTAGTCTTCCCGTGGCGGT+GGG 0.569534 8_3:-56401840 Msa1296680:CDS
AACCCACAAAACGCTCAGAA+TGG 0.570988 8_3:-56402416 Msa1296680:CDS
AATGGAAAGGTTATTTGGTG+AGG 0.571174 8_3:+56402820 None:intergenic
GTTTACTAAAGGAGAGTTGG+TGG 0.573190 8_3:+56402736 None:intergenic
TACTTATCTAATTATAGGGG+CGG 0.573305 8_3:-56399355 Msa1296680:CDS
TGATCCATATTGTTCTCCAC+AGG 0.576270 8_3:+56402248 None:intergenic
GATATATACTTCATCAATTG+CGG 0.585250 8_3:-56399865 Msa1296680:CDS
ACTGGTACGAAGATTCGGAA+TGG 0.590962 8_3:+56399698 None:intergenic
GCGGTGGGTTCAGTTCTTGG+AGG 0.597295 8_3:-56401825 Msa1296680:intron
GCGTTTAATATCACCTCCAA+AGG 0.601330 8_3:+56402391 None:intergenic
CATAAGTTGGAGTGTTCCTG+TGG 0.604966 8_3:-56402264 Msa1296680:CDS
CGATACTTATCTAATTATAG+GGG 0.612644 8_3:-56399358 Msa1296680:CDS
GAAATGGAAACGTACCATGT+AGG 0.613092 8_3:+56399654 None:intergenic
AAGAACTGAACCCACCGCCA+CGG 0.614054 8_3:+56401830 None:intergenic
TTTCACCACCGATGTTAAGA+CGG 0.619305 8_3:+56402501 None:intergenic
GAAAATTAGTCTTCCCGTGG+CGG 0.620200 8_3:-56401844 Msa1296680:CDS
GGCTTATCTACTTACAGTGG+CGG 0.632917 8_3:-56402554 Msa1296680:CDS
TATAGCATTAACAAACGCGA+AGG 0.635159 8_3:+56399453 None:intergenic
TTTCTCCTCCGACGTTAAGG+CGG 0.638143 8_3:+56399302 None:intergenic
ACCAAACACCGTCTTAACAT+CGG 0.638754 8_3:-56402509 Msa1296680:CDS
GAAGAAAATTAGTCTTCCCG+TGG 0.647377 8_3:-56401847 Msa1296680:CDS
ACAAAACACCGCCTTAACGT+CGG 0.655567 8_3:-56399310 Msa1296680:CDS
TGAATCGCCCAATTGAATCG+GGG 0.666832 8_3:+56399401 None:intergenic
CAAGGCTTATCTACTTACAG+TGG 0.669174 8_3:-56402557 Msa1296680:intron
AAACACCGCCTTAACGTCGG+AGG 0.677354 8_3:-56399307 Msa1296680:CDS
TAGCGTAGTACCTAATACGT+CGG 0.680013 8_3:-56401970 Msa1296680:CDS
AAACACCGTCTTAACATCGG+TGG 0.683836 8_3:-56402506 Msa1296680:CDS
ACTGCAGATGATGAGTCCGA+TGG 0.684779 8_3:-56399166 Msa1296680:CDS
AATCGGGGATTAAAAGAACA+GGG 0.712103 8_3:+56399416 None:intergenic
ACTGCACATGATGAATCTGA+TGG 0.714361 8_3:-56402368 Msa1296680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTGAATAATCTAA+GGG + chr8_3:56400053-56400072 None:intergenic 10.0%
!! ATTTAAATTTGAATAATCTA+AGG + chr8_3:56400054-56400073 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTTTG+AGG - chr8_3:56400287-56400306 Msa1296680:intron 10.0%
!! TCAAAAAAAAAAAAATAGTT+CGG - chr8_3:56400843-56400862 Msa1296680:intron 10.0%
!! ATAAATATGAAAACAAAAAA+TGG - chr8_3:56400959-56400978 Msa1296680:intron 10.0%
!!! TTAATATACTTTTTGTAAAT+AGG - chr8_3:56401132-56401151 Msa1296680:intron 10.0%
!!! ATGTTATTTTGAATCTTTTT+CGG + chr8_3:56399233-56399252 None:intergenic 15.0%
!! TTTAATTATACTTTCTGTTA+TGG - chr8_3:56400121-56400140 Msa1296680:intron 15.0%
!! GATTAAACCATTTAATTATT+TGG + chr8_3:56401033-56401052 None:intergenic 15.0%
!! TTTGTGTTTATATTAGTATA+GGG + chr8_3:56401182-56401201 None:intergenic 15.0%
!! ATTATTATATTAAGTTCATC+TGG - chr8_3:56401653-56401672 Msa1296680:intron 15.0%
!! TTATTATATTAAGTTCATCT+GGG - chr8_3:56401654-56401673 Msa1296680:intron 15.0%
!! ACCACAAAATCATAATAATA+AGG + chr8_3:56399903-56399922 None:intergenic 20.0%
!!! AAACCAAATGCTTTTTTAAA+TGG - chr8_3:56399987-56400006 Msa1296680:intron 20.0%
!!! AACCAAATGCTTTTTTAAAT+GGG - chr8_3:56399988-56400007 Msa1296680:intron 20.0%
!! ATTCTCAATTGTAAGATTAA+TGG - chr8_3:56400235-56400254 Msa1296680:intron 20.0%
!! ATTTAAACACATTGTATGTA+GGG + chr8_3:56400367-56400386 None:intergenic 20.0%
!! TATTTAAACACATTGTATGT+AGG + chr8_3:56400368-56400387 None:intergenic 20.0%
!! AGTATAAATGTTGAATCATA+TGG - chr8_3:56400428-56400447 Msa1296680:intron 20.0%
!! TACACATCCAAATAATTAAA+TGG - chr8_3:56401023-56401042 Msa1296680:intron 20.0%
!! CTTTGTGTTTATATTAGTAT+AGG + chr8_3:56401183-56401202 None:intergenic 20.0%
!! ATCAACAATCTATTAATACT+TGG + chr8_3:56401460-56401479 None:intergenic 20.0%
!! ATAAAAACAGAAACAAACAA+TGG - chr8_3:56401777-56401796 Msa1296680:intron 20.0%
!! AATTGATGAAGTATATATCT+TGG + chr8_3:56402057-56402076 None:intergenic 20.0%
!! GAAAGTAACAATGTTTATAT+TGG - chr8_3:56402100-56402119 Msa1296680:intron 20.0%
!! TCGATACTTATCTAATTATA+GGG - chr8_3:56402564-56402583 Msa1296680:intron 20.0%
!! TTAGTTATATAAATGTCATC+TGG + chr8_3:56402688-56402707 None:intergenic 20.0%
!!! GCTCAAAATAGTTTATTTTT+TGG - chr8_3:56402718-56402737 Msa1296680:CDS 20.0%
!!! CAAAATAGTTTATTTTTTGG+AGG - chr8_3:56402721-56402740 Msa1296680:CDS 20.0%
!!! ATTTTTTAACAGAGAGAAAC+CGG + chr8_3:56399151-56399170 None:intergenic 25.0%
! ACAAAATACTCGTTTACTAA+AGG + chr8_3:56399201-56399220 None:intergenic 25.0%
! TTAGTTATATAACTGTCATC+TGG + chr8_3:56399489-56399508 None:intergenic 25.0%
! CAAAAGGTTTAAACATAAGT+TGG - chr8_3:56399646-56399665 Msa1296680:CDS 25.0%
! TGTCATAAAAATAAAGCCTA+AGG + chr8_3:56399704-56399723 None:intergenic 25.0%
!!! GCCTTATTATTATGATTTTG+TGG - chr8_3:56399899-56399918 Msa1296680:intron 25.0%
! AATTATACTTTCTGTTATGG+CGG - chr8_3:56400124-56400143 Msa1296680:intron 25.0%
! CAACATTTATACTATACTAC+AGG + chr8_3:56400421-56400440 None:intergenic 25.0%
! GAAAATGTTTACAGAAAAAG+AGG + chr8_3:56400584-56400603 None:intergenic 25.0%
! TGAATAGTTAAAAGTTAACC+GGG + chr8_3:56400761-56400780 None:intergenic 25.0%
! GTGAATAGTTAAAAGTTAAC+CGG + chr8_3:56400762-56400781 None:intergenic 25.0%
! GAAATTAATTAGACATGCAT+AGG - chr8_3:56400818-56400837 Msa1296680:intron 25.0%
! AGTAGAAGTTGTAATGTATA+TGG + chr8_3:56400924-56400943 None:intergenic 25.0%
! TTAAAGCAACCAAAATGAAA+AGG + chr8_3:56401587-56401606 None:intergenic 25.0%
! AAAGAAAAGACTTTGATAAG+TGG + chr8_3:56401855-56401874 None:intergenic 25.0%
! GATATATACTTCATCAATTG+CGG - chr8_3:56402058-56402077 Msa1296680:intron 25.0%
!!! ATCTTTTTTTAGGGTAAGTA+GGG + chr8_3:56402135-56402154 None:intergenic 25.0%
!!! AATCTTTTTTTAGGGTAAGT+AGG + chr8_3:56402136-56402155 None:intergenic 25.0%
!!! TGTTGCTGAATCTTTTTTTA+GGG + chr8_3:56402144-56402163 None:intergenic 25.0%
! GTCGATACTTATCTAATTAT+AGG - chr8_3:56402563-56402582 Msa1296680:intron 25.0%
! CGATACTTATCTAATTATAG+GGG - chr8_3:56402565-56402584 Msa1296680:intron 25.0%
!! CGATAAAGTATCAATATTTC+TGG + chr8_3:56402653-56402672 None:intergenic 25.0%
! TTGATACTTTATCGAGAAAA+TGG - chr8_3:56402659-56402678 Msa1296680:CDS 25.0%
!!! GCAATATATTGATTTGAATC+TGG + chr8_3:56402784-56402803 None:intergenic 25.0%
! GCAGTTTGATAAATAATATC+TGG + chr8_3:56402808-56402827 None:intergenic 25.0%
GTGAGGATAATGAAAAGAAA+TGG + chr8_3:56399089-56399108 None:intergenic 30.0%
TTTGCAATGGAAAGGTTATT+TGG + chr8_3:56399111-56399130 None:intergenic 30.0%
! GAAAACGTTGAATTTTGCAA+TGG + chr8_3:56399124-56399143 None:intergenic 30.0%
!!! TTTTTTAACAGAGAGAAACC+GGG + chr8_3:56399150-56399169 None:intergenic 30.0%
TACAATAAATCTAGCGTTCA+AGG - chr8_3:56399348-56399367 Msa1296680:CDS 30.0%
! TTGATAACTTATCGAGAAAG+TGG - chr8_3:56399460-56399479 Msa1296680:CDS 30.0%
CCTATGTCTATAGTTGAATT+TGG + chr8_3:56399582-56399601 None:intergenic 30.0%
CCAAATTCAACTATAGACAT+AGG - chr8_3:56399579-56399598 Msa1296680:CDS 30.0%
GCAGTTCTATAAACAATATC+TGG + chr8_3:56399606-56399625 None:intergenic 30.0%
ACAATATGGATCATTTCCTT+AGG - chr8_3:56399685-56399704 Msa1296680:CDS 30.0%
!!! ATTTTTAGTGATCGACAATC+TGG - chr8_3:56399723-56399742 Msa1296680:CDS 30.0%
!! AGCCCATTTAAAAAAGCATT+TGG + chr8_3:56399993-56400012 None:intergenic 30.0%
ATGAAAGTGATTGAATCATC+AGG - chr8_3:56400020-56400039 Msa1296680:intron 30.0%
ATCTAAAAAAATAGCTCCTC+CGG + chr8_3:56400158-56400177 None:intergenic 30.0%
AGGAAGATTACTCTATAACA+GGG + chr8_3:56400564-56400583 None:intergenic 30.0%
!!! ACCTTTGAACTATTTTTGAG+AGG - chr8_3:56400991-56401010 Msa1296680:intron 30.0%
ACCTCTCAAAAATAGTTCAA+AGG + chr8_3:56400995-56401014 None:intergenic 30.0%
!!! GTCTGCATTTTGTTTTGTAA+GGG + chr8_3:56401215-56401234 None:intergenic 30.0%
!!! TGTCTGCATTTTGTTTTGTA+AGG + chr8_3:56401216-56401235 None:intergenic 30.0%
CAGTAAATGGAAACACAAAA+AGG - chr8_3:56401341-56401360 Msa1296680:intron 30.0%
! ACTCTAATGCCTTTTCATTT+TGG - chr8_3:56401575-56401594 Msa1296680:intron 30.0%
TAAAAAGTGATCGGATGATT+TGG + chr8_3:56401683-56401702 None:intergenic 30.0%
TTAGAAGTTAGAAGTAGTGA+GGG + chr8_3:56401883-56401902 None:intergenic 30.0%
!! ATAGAGTGTTGAATTGCAAT+GGG + chr8_3:56401971-56401990 None:intergenic 30.0%
GAAGAAGAAAAGCAAGTAAA+GGG + chr8_3:56401994-56402013 None:intergenic 30.0%
TGAAGAAGAAAAGCAAGTAA+AGG + chr8_3:56401995-56402014 None:intergenic 30.0%
!!! CTGTTGCTGAATCTTTTTTT+AGG + chr8_3:56402145-56402164 None:intergenic 30.0%
AATGGAAAATTCTTGCAGTT+TGG + chr8_3:56402210-56402229 None:intergenic 30.0%
GTGAAGAGAATGAAAAGAAA+TGG + chr8_3:56402288-56402307 None:intergenic 30.0%
! ATTTTGTAACAGAGAGAAAC+CGG + chr8_3:56402350-56402369 None:intergenic 30.0%
! ACGTAGTACTCTTTTACTAA+AGG + chr8_3:56402400-56402419 None:intergenic 30.0%
! TGTGAAAGTGATTTTGAATC+TGG + chr8_3:56402437-56402456 None:intergenic 30.0%
! TTTTAATCCCCGATTCAATT+GGG - chr8_3:56402515-56402534 Msa1296680:CDS 30.0%
TTCAATTACAACGATTCTAC+TGG - chr8_3:56402541-56402560 Msa1296680:CDS 30.0%
TACTTATCTAATTATAGGGG+CGG - chr8_3:56402568-56402587 Msa1296680:intron 30.0%
!! AAACTATTTTGAGCGTTAAG+TGG + chr8_3:56402712-56402731 None:intergenic 30.0%
ACTGCTAAAGAGAGTAAAAA+CGG - chr8_3:56402823-56402842 Msa1296680:CDS 30.0%
! AATGGAAAGGTTATTTGGTG+AGG + chr8_3:56399106-56399125 None:intergenic 35.0%
! CGTTGAATTTTGCAATGGAA+AGG + chr8_3:56399119-56399138 None:intergenic 35.0%
! AAATTCAACGTTTTCGTTCC+CGG - chr8_3:56399129-56399148 Msa1296680:CDS 35.0%
! AATGCGAATGATGATGTTTG+AGG + chr8_3:56399261-56399280 None:intergenic 35.0%
AATTGGGGATTAAATGACTG+GGG + chr8_3:56399311-56399330 None:intergenic 35.0%
GAATTGGGGATTAAATGACT+GGG + chr8_3:56399312-56399331 None:intergenic 35.0%
TGAATTGGGGATTAAATGAC+TGG + chr8_3:56399313-56399332 None:intergenic 35.0%
TGAAACGTGCAATTGAATTG+GGG + chr8_3:56399326-56399345 None:intergenic 35.0%
GTGAAACGTGCAATTGAATT+GGG + chr8_3:56399327-56399346 None:intergenic 35.0%
AGTGAAACGTGCAATTGAAT+TGG + chr8_3:56399328-56399347 None:intergenic 35.0%
TGAACCGTTAACACTTTCTT+GGG + chr8_3:56399628-56399647 None:intergenic 35.0%
TTGAACCGTTAACACTTTCT+TGG + chr8_3:56399629-56399648 None:intergenic 35.0%
!! GAAAGTGTTAACGGTTCAAA+AGG - chr8_3:56399630-56399649 Msa1296680:CDS 35.0%
AATGACAGTGATCAACAATC+TGG - chr8_3:56399798-56399817 Msa1296680:CDS 35.0%
AACTAAGGGGGAAAAATACA+AGG + chr8_3:56400201-56400220 None:intergenic 35.0%
! GTATTTTTCCCCCTTAGTTA+TGG - chr8_3:56400202-56400221 Msa1296680:intron 35.0%
AGACCAACAACCATAACTAA+GGG + chr8_3:56400215-56400234 None:intergenic 35.0%
TAGACCAACAACCATAACTA+AGG + chr8_3:56400216-56400235 None:intergenic 35.0%
TAAACACATTGTATGTAGGG+TGG + chr8_3:56400364-56400383 None:intergenic 35.0%
GAGAGATGCACAAAATACAA+CGG - chr8_3:56400499-56400518 Msa1296680:intron 35.0%
GAGGAAGATTACTCTATAAC+AGG + chr8_3:56400565-56400584 None:intergenic 35.0%
! TCTGTTTTCTTCATCTTTGC+TGG - chr8_3:56400640-56400659 Msa1296680:intron 35.0%
AATAGTTCGGTTAAGACACT+AGG - chr8_3:56400856-56400875 Msa1296680:intron 35.0%
CTTTCAGAAGTTAAAAGGTG+TGG + chr8_3:56401310-56401329 None:intergenic 35.0%
!!! CACACCTTTTAACTTCTGAA+AGG - chr8_3:56401308-56401327 Msa1296680:intron 35.0%
! TTGGCCTTTCAGAAGTTAAA+AGG + chr8_3:56401315-56401334 None:intergenic 35.0%
TTGTGTTTCCATTTACTGCA+GGG + chr8_3:56401339-56401358 None:intergenic 35.0%
TTTGTGTTTCCATTTACTGC+AGG + chr8_3:56401340-56401359 None:intergenic 35.0%
GGAAACACAAAAAGGCTATA+AGG - chr8_3:56401349-56401368 Msa1296680:intron 35.0%
! AAGGCTTACTTCAAGTTAAC+AGG - chr8_3:56401368-56401387 Msa1296680:intron 35.0%
! AGGCTTACTTCAAGTTAACA+GGG - chr8_3:56401369-56401388 Msa1296680:intron 35.0%
TATTTATCCAGAAGATGCTG+TGG + chr8_3:56401632-56401651 None:intergenic 35.0%
CCTGTACGTTAAAAAGTGAT+CGG + chr8_3:56401692-56401711 None:intergenic 35.0%
!! GGAAGTTGATTTTTCAACCA+TGG + chr8_3:56401745-56401764 None:intergenic 35.0%
TAAGTGGAAGACTTTAGTTG+TGG + chr8_3:56401839-56401858 None:intergenic 35.0%
TAGAAGTTAGAAGTAGTGAG+GGG + chr8_3:56401882-56401901 None:intergenic 35.0%
CTTAGAAGTTAGAAGTAGTG+AGG + chr8_3:56401884-56401903 None:intergenic 35.0%
!! TAGAGTGTTGAATTGCAATG+GGG + chr8_3:56401970-56401989 None:intergenic 35.0%
!! GATAGAGTGTTGAATTGCAA+TGG + chr8_3:56401972-56401991 None:intergenic 35.0%
!! TGAAGGCATTGATGATAGAT+TGG + chr8_3:56402179-56402198 None:intergenic 35.0%
AGTAAACTGGTACGAAGATT+CGG + chr8_3:56402233-56402252 None:intergenic 35.0%
! AGAAACGTTGAATTTTGCAG+TGG + chr8_3:56402323-56402342 None:intergenic 35.0%
AAATTCAACGTTTCTGTTCC+CGG - chr8_3:56402328-56402347 Msa1296680:intron 35.0%
! TTTTGTAACAGAGAGAAACC+GGG + chr8_3:56402349-56402368 None:intergenic 35.0%
! TTTTACTAAAGGAGACTTGG+TGG + chr8_3:56402389-56402408 None:intergenic 35.0%
! CTCTTTTACTAAAGGAGACT+TGG + chr8_3:56402392-56402411 None:intergenic 35.0%
TATAGCATTAACAAACGCGA+AGG + chr8_3:56402473-56402492 None:intergenic 35.0%
AATCGGGGATTAAAAGAACA+GGG + chr8_3:56402510-56402529 None:intergenic 35.0%
! CTTTTAATCCCCGATTCAAT+TGG - chr8_3:56402514-56402533 Msa1296680:CDS 35.0%
ATTGAATCGCCCAATTGAAT+CGG + chr8_3:56402527-56402546 None:intergenic 35.0%
! TTGATTTGAATCTGGACCAT+CGG + chr8_3:56402776-56402795 None:intergenic 35.0%
GTTTACTAAAGGAGAGTTGG+TGG + chr8_3:56399190-56399209 None:intergenic 40.0%
CTCGTTTACTAAAGGAGAGT+TGG + chr8_3:56399193-56399212 None:intergenic 40.0%
CAAGGCTTATCTACTTACAG+TGG - chr8_3:56399366-56399385 Msa1296680:CDS 40.0%
ACCAAACACCGTCTTAACAT+CGG - chr8_3:56399414-56399433 Msa1296680:CDS 40.0%
TTTCACCACCGATGTTAAGA+CGG + chr8_3:56399425-56399444 None:intergenic 40.0%
! AACCATTCTGAGCGTTTTGT+GGG + chr8_3:56399512-56399531 None:intergenic 40.0%
GCGTTTAATATCACCTCCAA+AGG + chr8_3:56399535-56399554 None:intergenic 40.0%
ACTGCACATGATGAATCTGA+TGG - chr8_3:56399555-56399574 Msa1296680:CDS 40.0%
!! ACTGCCCAAGAAAGTGTTAA+CGG - chr8_3:56399621-56399640 Msa1296680:CDS 40.0%
TGTTCCTGTGGAGAACAATA+TGG - chr8_3:56399671-56399690 Msa1296680:CDS 40.0%
TGATCCATATTGTTCTCCAC+AGG + chr8_3:56399678-56399697 None:intergenic 40.0%
GCATCTGTTGTGACAAACTT+GGG + chr8_3:56399881-56399900 None:intergenic 40.0%
TAGCGTAGTACCTAATACGT+CGG - chr8_3:56399953-56399972 Msa1296680:intron 40.0%
!! GAAGAAAATTAGTCTTCCCG+TGG - chr8_3:56400076-56400095 Msa1296680:intron 40.0%
TAAAAAAATAGCTCCTCCGG+TGG + chr8_3:56400155-56400174 None:intergenic 40.0%
ACCAACAACCATAACTAAGG+GGG + chr8_3:56400213-56400232 None:intergenic 40.0%
GACCAACAACCATAACTAAG+GGG + chr8_3:56400214-56400233 None:intergenic 40.0%
AGATGCACAAAATACAACGG+TGG - chr8_3:56400502-56400521 Msa1296680:intron 40.0%
ATATTCTGACTACGAGCAAG+TGG + chr8_3:56400671-56400690 None:intergenic 40.0%
GGATCAATGTTCTCAGTGTT+AGG + chr8_3:56400740-56400759 None:intergenic 40.0%
AACACTGAGAACATTGATCC+CGG - chr8_3:56400740-56400759 Msa1296680:intron 40.0%
CACTCTCTAGATCTCTAAAC+TGG - chr8_3:56401052-56401071 Msa1296680:intron 40.0%
! TACCTACATCTCTTGGTTTG+TGG + chr8_3:56401250-56401269 None:intergenic 40.0%
ACAAACCAAGAGATGTAGGT+AGG - chr8_3:56401249-56401268 Msa1296680:intron 40.0%
TTTAACAACGATTCTCGAGC+AGG + chr8_3:56401279-56401298 None:intergenic 40.0%
! GGCTTACTTCAAGTTAACAG+GGG - chr8_3:56401370-56401389 Msa1296680:intron 40.0%
! TTACTTCAAGTTAACAGGGG+AGG - chr8_3:56401373-56401392 Msa1296680:intron 40.0%
ATCTCTGCTTTGTAGCAATC+TGG + chr8_3:56401401-56401420 None:intergenic 40.0%
GAGTGCAATTATCAATTCCC+AGG + chr8_3:56401559-56401578 None:intergenic 40.0%
!!! CCGATCACTTTTTAACGTAC+AGG - chr8_3:56401689-56401708 Msa1296680:intron 40.0%
TCATGTGTCAAGTAGTTCCA+TGG - chr8_3:56401725-56401744 Msa1296680:intron 40.0%
! AAGACTTTAGTTGTGGACTG+TGG + chr8_3:56401832-56401851 None:intergenic 40.0%
TGGAGATTGTATCCTAGTGA+GGG + chr8_3:56402037-56402056 None:intergenic 40.0%
TTGGAGATTGTATCCTAGTG+AGG + chr8_3:56402038-56402057 None:intergenic 40.0%
TGTTTGGGAAGGTAGTAAAC+TGG + chr8_3:56402246-56402265 None:intergenic 40.0%
!! GTACCATGTAGGTGTTGTTT+GGG + chr8_3:56402261-56402280 None:intergenic 40.0%
GAAATGGAAACGTACCATGT+AGG + chr8_3:56402272-56402291 None:intergenic 40.0%
TTTGCAGTGGAAAGGTTAGT+TGG + chr8_3:56402310-56402329 None:intergenic 40.0%
! CGTTGAATTTTGCAGTGGAA+AGG + chr8_3:56402318-56402337 None:intergenic 40.0%
! AACGCGAAGGATAAGTTTTG+AGG + chr8_3:56402460-56402479 None:intergenic 40.0%
GAATCGGGGATTAAAAGAAC+AGG + chr8_3:56402511-56402530 None:intergenic 40.0%
TTGAATCGCCCAATTGAATC+GGG + chr8_3:56402526-56402545 None:intergenic 40.0%
GGCTTATCTACTTACAGTGG+CGG - chr8_3:56399369-56399388 Msa1296680:CDS 45.0%
ACCGATGTTAAGACGGTGTT+TGG + chr8_3:56399418-56399437 None:intergenic 45.0%
AAACACCGTCTTAACATCGG+TGG - chr8_3:56399417-56399436 Msa1296680:CDS 45.0%
AACCCACAAAACGCTCAGAA+TGG - chr8_3:56399507-56399526 Msa1296680:CDS 45.0%
! GAACCATTCTGAGCGTTTTG+TGG + chr8_3:56399513-56399532 None:intergenic 45.0%
AACGCTCAGAATGGTTCCTT+TGG - chr8_3:56399516-56399535 Msa1296680:CDS 45.0%
! CATAAGTTGGAGTGTTCCTG+TGG - chr8_3:56399659-56399678 Msa1296680:CDS 45.0%
GGCATCTGTTGTGACAAACT+TGG + chr8_3:56399882-56399901 None:intergenic 45.0%
! GATTTTGTGGTTCGTTCCGA+TGG - chr8_3:56399912-56399931 Msa1296680:intron 45.0%
GGTACTACGCTAACCTTCAA+TGG + chr8_3:56399945-56399964 None:intergenic 45.0%
! AGTACCTAATACGTCGGTTG+AGG - chr8_3:56399959-56399978 Msa1296680:intron 45.0%
!! GAAAATTAGTCTTCCCGTGG+CGG - chr8_3:56400079-56400098 Msa1296680:intron 45.0%
TCCCCCTTAGTTATGGTTGT+TGG - chr8_3:56400209-56400228 Msa1296680:intron 45.0%
ACACATTGTATGTAGGGTGG+AGG + chr8_3:56400361-56400380 None:intergenic 45.0%
TATGGTGAACACTTGTAGCC+TGG - chr8_3:56400446-56400465 Msa1296680:intron 45.0%
TGTGCATCTCTCTTTCTCTC+AGG + chr8_3:56400491-56400510 None:intergenic 45.0%
GCACAAAATACAACGGTGGA+TGG - chr8_3:56400506-56400525 Msa1296680:intron 45.0%
!! CTCTTGGTTTGTGGCTTGTA+TGG + chr8_3:56401241-56401260 None:intergenic 45.0%
AGCCACAAACCAAGAGATGT+AGG - chr8_3:56401245-56401264 Msa1296680:intron 45.0%
GATGACCTACCTACATCTCT+TGG + chr8_3:56401257-56401276 None:intergenic 45.0%
TTTCCATTTACTGCAGGGCT+TGG + chr8_3:56401334-56401353 None:intergenic 45.0%
TCATTCTCCACAGCATCTTC+TGG - chr8_3:56401622-56401641 Msa1296680:intron 45.0%
TTGAATTGCAATGGGGAGAG+AGG + chr8_3:56401963-56401982 None:intergenic 45.0%
GGAGATTGTATCCTAGTGAG+GGG + chr8_3:56402036-56402055 None:intergenic 45.0%
GCAGTTTGGTAGAGAGATGA+AGG + chr8_3:56402196-56402215 None:intergenic 45.0%
ACTGGTACGAAGATTCGGAA+TGG + chr8_3:56402228-56402247 None:intergenic 45.0%
!! CATGTAGGTGTTGTTTGGGA+AGG + chr8_3:56402257-56402276 None:intergenic 45.0%
CTTCCCAAACAACACCTACA+TGG - chr8_3:56402255-56402274 Msa1296680:CDS 45.0%
!! CGTACCATGTAGGTGTTGTT+TGG + chr8_3:56402262-56402281 None:intergenic 45.0%
TGAATCGCCCAATTGAATCG+GGG + chr8_3:56402525-56402544 None:intergenic 45.0%
ACAAAACACCGCCTTAACGT+CGG - chr8_3:56402613-56402632 Msa1296680:intron 45.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr8_3:56400288-56400307 Msa1296680:intron 5.0%
!!! TGTTTTTATTTTTAAAAATT+TGG + chr8_3:56401766-56401785 None:intergenic 5.0%
CGGTTTACTCTCACGAGCAT+TGG - chr8_3:56399389-56399408 Msa1296680:CDS 50.0%
GCTCAGAATGGTTCCTTTGG+AGG - chr8_3:56399519-56399538 Msa1296680:CDS 50.0%
CTTCAATGGTCCTGAGCCAT+CGG + chr8_3:56399931-56399950 None:intergenic 50.0%
GCAACCTCAACCGACGTATT+AGG + chr8_3:56399966-56399985 None:intergenic 50.0%
TGTTATGGCGGTTTCTCCAC+CGG - chr8_3:56400136-56400155 Msa1296680:intron 50.0%
ATCCTTCACGAGTTGTTGCC+AGG + chr8_3:56400467-56400486 None:intergenic 50.0%
TCACTACAACTCCCCTCACT+AGG - chr8_3:56402022-56402041 Msa1296680:CDS 50.0%
TTTCTCCTCCGACGTTAAGG+CGG + chr8_3:56402624-56402643 None:intergenic 50.0%
CAGTTTCTCCTCCGACGTTA+AGG + chr8_3:56402627-56402646 None:intergenic 50.0%
ACTGCAGATGATGAGTCCGA+TGG - chr8_3:56402757-56402776 Msa1296680:CDS 50.0%
CGATGGCTCAGGACCATTGA+AGG - chr8_3:56399929-56399948 Msa1296680:intron 55.0%
!! AATTAGTCTTCCCGTGGCGG+TGG - chr8_3:56400082-56400101 Msa1296680:intron 55.0%
!! ATTAGTCTTCCCGTGGCGGT+GGG - chr8_3:56400083-56400102 Msa1296680:intron 55.0%
AAGAACTGAACCCACCGCCA+CGG + chr8_3:56400096-56400115 None:intergenic 55.0%
AGCCTGGCAACAACTCGTGA+AGG - chr8_3:56400462-56400481 Msa1296680:intron 55.0%
AGGCCAAGCCCTGCAGTAAA+TGG - chr8_3:56401328-56401347 Msa1296680:intron 55.0%
! CAGGCACTGCAGTGTGTGAT+GGG + chr8_3:56401540-56401559 None:intergenic 55.0%
CATCACACACTGCAGTGCCT+GGG - chr8_3:56401539-56401558 Msa1296680:intron 55.0%
CGGTTTACACTCTCGAGCGT+TGG - chr8_3:56402588-56402607 Msa1296680:intron 55.0%
AAACACCGCCTTAACGTCGG+AGG - chr8_3:56402616-56402635 Msa1296680:intron 55.0%
GTGGTTCGTTCCGATGGCTC+AGG - chr8_3:56399918-56399937 Msa1296680:intron 60.0%
AGAACTGAACCCACCGCCAC+GGG + chr8_3:56400095-56400114 None:intergenic 60.0%
! GTGGCGGTGGGTTCAGTTCT+TGG - chr8_3:56400095-56400114 Msa1296680:intron 60.0%
! GCGGTGGGTTCAGTTCTTGG+AGG - chr8_3:56400098-56400117 Msa1296680:intron 60.0%
TATGGCGGTTTCTCCACCGG+AGG - chr8_3:56400139-56400158 Msa1296680:intron 60.0%
! CCAGGCACTGCAGTGTGTGA+TGG + chr8_3:56401541-56401560 None:intergenic 60.0%
CCATCACACACTGCAGTGCC+TGG - chr8_3:56401538-56401557 Msa1296680:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56399075 56402870 56399075 ID=Msa1296680;Name=Msa1296680
chr8_3 mRNA 56399075 56402870 56399075 ID=Msa1296680-mRNA-1;Parent=Msa1296680;Name=Msa1296680-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|5|0|578
chr8_3 exon 56402633 56402870 56402633 ID=Msa1296680-mRNA-1:exon:16192;Parent=Msa1296680-mRNA-1
chr8_3 exon 56402369 56402575 56402369 ID=Msa1296680-mRNA-1:exon:16191;Parent=Msa1296680-mRNA-1
chr8_3 exon 56402103 56402344 56402103 ID=Msa1296680-mRNA-1:exon:16190;Parent=Msa1296680-mRNA-1
chr8_3 exon 56401826 56402048 56401826 ID=Msa1296680-mRNA-1:exon:16189;Parent=Msa1296680-mRNA-1
chr8_3 exon 56399075 56399901 56399075 ID=Msa1296680-mRNA-1:exon:16188;Parent=Msa1296680-mRNA-1
chr8_3 CDS 56402633 56402870 56402633 ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1
chr8_3 CDS 56402369 56402575 56402369 ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1
chr8_3 CDS 56402103 56402344 56402103 ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1
chr8_3 CDS 56401826 56402048 56401826 ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1
chr8_3 CDS 56399075 56399901 56399075 ID=Msa1296680-mRNA-1:cds;Parent=Msa1296680-mRNA-1
Gene Sequence

>Msa1296680

ATGATACGTTTCCATTTCTTTTCATTATCCTCACCAAATAACCTTTCCATTGCAAAATTCAACGTTTTCGTTCCCGGTTTCTCTCTGTTAAAAAATTTTGATGCTAAAAACACCACCAACTCTCCTTTAGTAAACGAGTATTTTGTTAAAATCATCCGAAAAAGATTCAAAATAACATTCACACCTCAAACATCATCATTCGCATTTGTTAACGCAATAGAACTCTTTATACTCCCCAGCTTATCTACTTACAGTGGCGGTTTACTCTCACGAGCATTGGAAACCAAACACCGTCTTAACATCGGTGGTGAAACTGTCACTAGAGATATTGATAACTTATCGAGAAAGTGGTTACCAGATGACAGTTATATAACTAACCCACAAAACGCTCAGAATGGTTCCTTTGGAGGTGATATTAAACGCACTGCACATGATGAATCTGATGGTCCAGATATTGTTTATAGAACTGCCCAAGAAAGTGTTAACGGTTCAAAAGGTTTAAACATAAGTTGGAGTGTTCCTGTGGAGAACAATATGGATCATTTCCTTAGGCTTTATTTTTATGACATTTTTAGTGATCGACAATCTGGTCTTACGTTTTTCAATCTCTTCGTTTATGACAGTTATGTTATAAATGTAAATAATGACAGTGATCAACAATCTGGTCTTACATTTTTCAATCTCTTCATGCCTTATTATTATGATTTTGTGGTTCGTTCCGATGGCTCAGGACCATTGAAGGTTAGCGTAGTACCTAATACGTCGGTTGAGGTTGCTAAACCAAATGCTTTTTTAAATGGGCTAGAAGTGATGAAAGTGATTGAATCATCAGGTTTAGTTCCCTTAGATTATTCAAATTTAAATTTGAAGAAAATTAGTCTTCCCGTGGCGGTGGGTTCAGTTCTTGGAGGATACAATCTCCAAGATATATACTTCATCAATTGCGGCTCAAATGTTGACGTTAATGAAAGTAACAATGTTTATATTGGCGAATCAAACCCTACTTACCCTAAAAAAAGATTCAGCAACAGCAACATAGAAACCAATCTATCATCAATGCCTTCATCTCTCTACCAAACTGCAAGAATTTTCCATTCCGAATCTTCGTACCAGTTTACTACCTTCCCAAACAACACCTACATGGTACGTTTCCATTTCTTTTCATTCTCTTCACCAACTAACCTTTCCACTGCAAAATTCAACGTTTCTGTTCCCGGTTTCTCTCTGTTACAAAATTTTGATGCAAAAAACACCACCAAGTCTCCTTTAGTAAAAGAGTACTACGTTAAAATCAACATAACCAGATTCAAAATCACTTTCACACCTCAAAACTTATCCTTCGCGTTTGTTAATGCTATAGAACTCTTTCTGCTCCCTGTTCTTTTAATCCCCGATTCAATTGGGCGATTCAATTACAACGATTCTACTGGTCGATACTTATCTAATTATAGGGGCGGTTTACACTCTCGAGCGTTGGAAACAAAACACCGCCTTAACGTCGGAGGAGAAACTGTCACCAGAAATATTGATACTTTATCGAGAAAATGGTTACCAGATGACATTTATATAACTAATCCACTTAACGCTCAAAATAGTTTATTTTTTGGAGGTACAATTAAACGCACTGCAGATGATGAGTCCGATGGTCCAGATTCAAATCAATATATTGCTCCAGATATTATTTATCAAACTGCTAAAGAGAGTAAAAACGGTTCTAACGATTTAAGCATAAGTTAG

Protein sequence

>Msa1296680

MIRFHFFSLSSPNNLSIAKFNVFVPGFSLLKNFDAKNTTNSPLVNEYFVKIIRKRFKITFTPQTSSFAFVNAIELFILPSLSTYSGGLLSRALETKHRLNIGGETVTRDIDNLSRKWLPDDSYITNPQNAQNGSFGGDIKRTAHDESDGPDIVYRTAQESVNGSKGLNISWSVPVENNMDHFLRLYFYDIFSDRQSGLTFFNLFVYDSYVINVNNDSDQQSGLTFFNLFMPYYYDFVVRSDGSGPLKVSVVPNTSVEVAKPNAFLNGLEVMKVIESSGLVPLDYSNLNLKKISLPVAVGSVLGGYNLQDIYFINCGSNVDVNESNNVYIGESNPTYPKKRFSNSNIETNLSSMPSSLYQTARIFHSESSYQFTTFPNNTYMVRFHFFSFSSPTNLSTAKFNVSVPGFSLLQNFDAKNTTKSPLVKEYYVKINITRFKITFTPQNLSFAFVNAIELFLLPVLLIPDSIGRFNYNDSTGRYLSNYRGGLHSRALETKHRLNVGGETVTRNIDTLSRKWLPDDIYITNPLNAQNSLFFGGTIKRTADDESDGPDSNQYIAPDIIYQTAKESKNGSNDLSIS*