Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365850 | XP_003591981.1 | 93.514 | 185 | 12 | 0 | 1 | 185 | 1 | 185 | 4.74e-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365850 | G7I9N5 | 93.514 | 185 | 12 | 0 | 1 | 185 | 1 | 185 | 2.26e-125 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009530 | Msa1365850 | -0.806623 | 7.518153e-50 | -8.615850e-47 |
| Msa0009560 | Msa1365850 | -0.800010 | 1.761184e-48 | -8.615850e-47 |
| Msa0011510 | Msa1365850 | 0.806015 | 1.009935e-49 | -8.615850e-47 |
| Msa0034100 | Msa1365850 | -0.802542 | 5.340945e-49 | -8.615850e-47 |
| Msa0045620 | Msa1365850 | 0.823672 | 1.220847e-53 | -8.615850e-47 |
| Msa0048950 | Msa1365850 | 0.844227 | 8.612369e-59 | -8.615850e-47 |
| Msa0059880 | Msa1365850 | 0.840399 | 8.903635e-58 | -8.615850e-47 |
| Msa0069480 | Msa1365850 | 0.925317 | 2.161481e-90 | -8.615850e-47 |
| Msa0072030 | Msa1365850 | 0.814384 | 1.583907e-51 | -8.615850e-47 |
| Msa0074620 | Msa1365850 | 0.823801 | 1.139179e-53 | -8.615850e-47 |
| Msa0099090 | Msa1365850 | -0.803408 | 3.535979e-49 | -8.615850e-47 |
| Msa0120050 | Msa1365850 | 0.804829 | 1.790146e-49 | -8.615850e-47 |
| Msa1344930 | Msa1365850 | 0.837379 | 5.380644e-57 | -8.615850e-47 |
| Msa1357840 | Msa1365850 | 0.805887 | 1.074320e-49 | -8.615850e-47 |
| Msa1365850 | Msa1371800 | 0.815485 | 9.023647e-52 | -8.615850e-47 |
| Msa1365850 | Msa1373560 | 0.822146 | 2.769311e-53 | -8.615850e-47 |
| Msa1365850 | Msa1373990 | 0.817326 | 3.495022e-52 | -8.615850e-47 |
| Msa1365850 | Msa1376070 | 0.844465 | 7.435764e-59 | -8.615850e-47 |
| Msa1365850 | Msa1376310 | 0.811935 | 5.458254e-51 | -8.615850e-47 |
| Msa1365850 | Msa1377520 | 0.814058 | 1.868684e-51 | -8.615850e-47 |
| Msa1365850 | Msa1378400 | 0.808873 | 2.500308e-50 | -8.615850e-47 |
| Msa1365850 | Msa1380740 | 0.831605 | 1.518440e-55 | -8.615850e-47 |
| Msa1365850 | Msa1407670 | 0.828819 | 7.272380e-55 | -8.615850e-47 |
| Msa1365850 | Msa1409060 | 0.800337 | 1.510883e-48 | -8.615850e-47 |
| Msa1365850 | Msa1411550 | 0.807846 | 4.139616e-50 | -8.615850e-47 |
| Msa1365850 | Msa1413020 | 0.818098 | 2.340410e-52 | -8.615850e-47 |
| Msa1365850 | Msa1420020 | 0.816164 | 6.367657e-52 | -8.615850e-47 |
| Msa1365850 | Msa1421120 | 0.809537 | 1.802122e-50 | -8.615850e-47 |
| Msa1365850 | Msa1421130 | 0.809957 | 1.463275e-50 | -8.615850e-47 |
| Msa1365850 | Msa1445900 | 0.813479 | 2.507122e-51 | -8.615850e-47 |
| Msa1365850 | Msa1449770 | 0.826340 | 2.862583e-54 | -8.615850e-47 |
| Msa1365850 | Msa1459610 | 0.824381 | 8.322415e-54 | -8.615850e-47 |
| Msa1365850 | Msa1461660 | 0.823507 | 1.334540e-53 | -8.615850e-47 |
| Msa1365850 | Msa1466530 | 0.851987 | 6.204174e-61 | -8.615850e-47 |
| Msa0605470 | Msa1365850 | 0.810458 | 1.141271e-50 | -8.615850e-47 |
| Msa0623310 | Msa1365850 | 0.828066 | 1.104914e-54 | -8.615850e-47 |
| Msa0623980 | Msa1365850 | 0.808056 | 3.735376e-50 | -8.615850e-47 |
| Msa0624050 | Msa1365850 | 0.813494 | 2.487970e-51 | -8.615850e-47 |
| Msa0631700 | Msa1365850 | 0.813190 | 2.900902e-51 | -8.615850e-47 |
| Msa0641700 | Msa1365850 | 0.818554 | 1.845364e-52 | -8.615850e-47 |
| Msa0643840 | Msa1365850 | 0.804738 | 1.870491e-49 | -8.615850e-47 |
| Msa0650310 | Msa1365850 | 0.810710 | 1.006556e-50 | -8.615850e-47 |
| Msa0658120 | Msa1365850 | 0.800237 | 1.583977e-48 | -8.615850e-47 |
| Msa0665830 | Msa1365850 | 0.801321 | 9.515631e-49 | -8.615850e-47 |
| Msa0670360 | Msa1365850 | 0.805248 | 1.462918e-49 | -8.615850e-47 |
| Msa0673940 | Msa1365850 | 0.805366 | 1.382068e-49 | -8.615850e-47 |
| Msa0676190 | Msa1365850 | 0.806701 | 7.238630e-50 | -8.615850e-47 |
| Msa0678620 | Msa1365850 | 0.829124 | 6.134780e-55 | -8.615850e-47 |
| Msa0695630 | Msa1365850 | 0.801695 | 7.976995e-49 | -8.615850e-47 |
| Msa0706130 | Msa1365850 | -0.806604 | 7.590293e-50 | -8.615850e-47 |
| Msa0711240 | Msa1365850 | 0.811288 | 7.547446e-51 | -8.615850e-47 |
| Msa0727480 | Msa1365850 | 0.819249 | 1.282432e-52 | -8.615850e-47 |
| Msa0756670 | Msa1365850 | -0.809258 | 2.067679e-50 | -8.615850e-47 |
| Msa0761830 | Msa1365850 | 0.819023 | 1.443416e-52 | -8.615850e-47 |
| Msa0768670 | Msa1365850 | 0.810074 | 1.381144e-50 | -8.615850e-47 |
| Msa0768720 | Msa1365850 | 0.812812 | 3.511391e-51 | -8.615850e-47 |
| Msa0777070 | Msa1365850 | 0.802808 | 4.706777e-49 | -8.615850e-47 |
| Msa0791300 | Msa1365850 | 0.803858 | 2.852525e-49 | -8.615850e-47 |
| Msa0798240 | Msa1365850 | 0.801839 | 7.450427e-49 | -8.615850e-47 |
| Msa0804170 | Msa1365850 | 0.815781 | 7.755132e-52 | -8.615850e-47 |
| Msa0813840 | Msa1365850 | 0.801871 | 7.337999e-49 | -8.615850e-47 |
| Msa0814160 | Msa1365850 | 0.801155 | 1.029011e-48 | -8.615850e-47 |
| Msa0824860 | Msa1365850 | 0.803014 | 4.266967e-49 | -8.615850e-47 |
| Msa0828350 | Msa1365850 | 0.806087 | 9.751754e-50 | -8.615850e-47 |
| Msa0836060 | Msa1365850 | -0.805438 | 1.334986e-49 | -8.615850e-47 |
| Msa0841670 | Msa1365850 | 0.809204 | 2.124212e-50 | -8.615850e-47 |
| Msa0121320 | Msa1365850 | 0.801621 | 8.259419e-49 | -8.615850e-47 |
| Msa0128340 | Msa1365850 | 0.819753 | 9.841844e-53 | -8.615850e-47 |
| Msa0128740 | Msa1365850 | 0.814802 | 1.279963e-51 | -8.615850e-47 |
| Msa0131460 | Msa1365850 | 0.920369 | 1.397147e-87 | -8.615850e-47 |
| Msa0132080 | Msa1365850 | -0.809140 | 2.191777e-50 | -8.615850e-47 |
| Msa0140270 | Msa1365850 | 0.830292 | 3.187695e-55 | -8.615850e-47 |
| Msa0144010 | Msa1365850 | 0.802449 | 5.580454e-49 | -8.615850e-47 |
| Msa0146210 | Msa1365850 | 0.818593 | 1.807820e-52 | -8.615850e-47 |
| Msa0150910 | Msa1365850 | 0.834054 | 3.740873e-56 | -8.615850e-47 |
| Msa0163340 | Msa1365850 | 0.811342 | 7.346576e-51 | -8.615850e-47 |
| Msa0163960 | Msa1365850 | -0.813536 | 2.435670e-51 | -8.615850e-47 |
| Msa0170990 | Msa1365850 | 0.821523 | 3.859559e-53 | -8.615850e-47 |
| Msa0177260 | Msa1365850 | 0.900356 | 7.952963e-78 | -8.615850e-47 |
| Msa0190890 | Msa1365850 | 0.814784 | 1.291734e-51 | -8.615850e-47 |
| Msa0191100 | Msa1365850 | 0.800743 | 1.248748e-48 | -8.615850e-47 |
| Msa0196260 | Msa1365850 | 0.803636 | 3.172221e-49 | -8.615850e-47 |
| Msa0210790 | Msa1365850 | 0.804290 | 2.318741e-49 | -8.615850e-47 |
| Msa0210850 | Msa1365850 | 0.809172 | 2.157555e-50 | -8.615850e-47 |
| Msa0212550 | Msa1365850 | 0.803662 | 3.131986e-49 | -8.615850e-47 |
| Msa0219210 | Msa1365850 | 0.813587 | 2.373243e-51 | -8.615850e-47 |
| Msa0225070 | Msa1365850 | -0.802427 | 5.638550e-49 | -8.615850e-47 |
| Msa0233210 | Msa1365850 | 0.804467 | 2.130171e-49 | -8.615850e-47 |
| Msa0235080 | Msa1365850 | 0.801464 | 8.892242e-49 | -8.615850e-47 |
| Msa1300610 | Msa1365850 | 0.801894 | 7.259493e-49 | -8.615850e-47 |
| Msa1314040 | Msa1365850 | 0.801454 | 8.934890e-49 | -8.615850e-47 |
| Msa1323030 | Msa1365850 | 0.817222 | 3.688949e-52 | -8.615850e-47 |
| Msa1323120 | Msa1365850 | 0.802435 | 5.617711e-49 | -8.615850e-47 |
| Msa1323260 | Msa1365850 | -0.801022 | 1.095586e-48 | -8.615850e-47 |
| Msa1329740 | Msa1365850 | 0.811917 | 5.508064e-51 | -8.615850e-47 |
| Msa0366510 | Msa1365850 | 0.801959 | 7.038663e-49 | -8.615850e-47 |
| Msa0374130 | Msa1365850 | 0.814668 | 1.369966e-51 | -8.615850e-47 |
| Msa0414480 | Msa1365850 | 0.817056 | 4.019051e-52 | -8.615850e-47 |
| Msa0426030 | Msa1365850 | 0.800711 | 1.267773e-48 | -8.615850e-47 |
| Msa0426170 | Msa1365850 | 0.822014 | 2.971115e-53 | -8.615850e-47 |
| Msa0427260 | Msa1365850 | -0.800049 | 1.729532e-48 | -8.615850e-47 |
| Msa0430460 | Msa1365850 | 0.824369 | 8.377876e-54 | -8.615850e-47 |
| Msa0444200 | Msa1365850 | 0.824740 | 6.853296e-54 | -8.615850e-47 |
| Msa0985700 | Msa1365850 | 0.814680 | 1.361675e-51 | -8.615850e-47 |
| Msa0993450 | Msa1365850 | 0.808403 | 3.151493e-50 | -8.615850e-47 |
| Msa1003110 | Msa1365850 | 0.801170 | 1.021524e-48 | -8.615850e-47 |
| Msa1021620 | Msa1365850 | 0.804340 | 2.264154e-49 | -8.615850e-47 |
| Msa1024350 | Msa1365850 | 0.805048 | 1.610867e-49 | -8.615850e-47 |
| Msa1026050 | Msa1365850 | 0.814762 | 1.306350e-51 | -8.615850e-47 |
| Msa1031530 | Msa1365850 | -0.802517 | 5.403251e-49 | -8.615850e-47 |
| Msa1037350 | Msa1365850 | 0.806948 | 6.418003e-50 | -8.615850e-47 |
| Msa1041630 | Msa1365850 | 0.801343 | 9.416421e-49 | -8.615850e-47 |
| Msa1043020 | Msa1365850 | -0.808258 | 3.383340e-50 | -8.615850e-47 |
| Msa1050540 | Msa1365850 | -0.815699 | 8.088629e-52 | -8.615850e-47 |
| Msa1050640 | Msa1365850 | -0.800020 | 1.753195e-48 | -8.615850e-47 |
| Msa1052030 | Msa1365850 | -0.800071 | 1.711778e-48 | -8.615850e-47 |
| Msa1061670 | Msa1365850 | 0.822083 | 2.863191e-53 | -8.615850e-47 |
| Msa1076830 | Msa1365850 | 0.845281 | 4.478699e-59 | -8.615850e-47 |
| Msa1081610 | Msa1365850 | 0.804130 | 2.504345e-49 | -8.615850e-47 |
| Msa1096520 | Msa1365850 | -0.801512 | 8.694157e-49 | -8.615850e-47 |
| Msa1096570 | Msa1365850 | -0.805537 | 1.272330e-49 | -8.615850e-47 |
| Msa1098100 | Msa1365850 | 0.813342 | 2.687509e-51 | -8.615850e-47 |
| Msa1104960 | Msa1365850 | 0.811715 | 6.095198e-51 | -8.615850e-47 |
| Msa1106960 | Msa1365850 | 0.816646 | 4.968694e-52 | -8.615850e-47 |
| Msa0239610 | Msa1365850 | -0.808496 | 3.010340e-50 | -8.615850e-47 |
| Msa0252930 | Msa1365850 | 0.804095 | 2.546045e-49 | -8.615850e-47 |
| Msa0260980 | Msa1365850 | 0.800150 | 1.649611e-48 | -8.615850e-47 |
| Msa0267710 | Msa1365850 | 0.801000 | 1.106897e-48 | -8.615850e-47 |
| Msa0270730 | Msa1365850 | -0.800128 | 1.666517e-48 | -8.615850e-47 |
| Msa0274250 | Msa1365850 | 0.808699 | 2.724103e-50 | -8.615850e-47 |
| Msa0278480 | Msa1365850 | 0.806983 | 6.311673e-50 | -8.615850e-47 |
| Msa0278940 | Msa1365850 | 0.802295 | 6.002344e-49 | -8.615850e-47 |
| Msa0298270 | Msa1365850 | 0.810824 | 9.514180e-51 | -8.615850e-47 |
| Msa0311540 | Msa1365850 | 0.843019 | 1.812596e-58 | -8.615850e-47 |
| Msa0317300 | Msa1365850 | 0.803427 | 3.503638e-49 | -8.615850e-47 |
| Msa0327890 | Msa1365850 | 0.811209 | 7.849924e-51 | -8.615850e-47 |
| Msa0328870 | Msa1365850 | 0.802146 | 6.442420e-49 | -8.615850e-47 |
| Msa1109500 | Msa1365850 | -0.800546 | 1.370187e-48 | -8.615850e-47 |
| Msa1109880 | Msa1365850 | 0.815412 | 9.367132e-52 | -8.615850e-47 |
| Msa1109890 | Msa1365850 | 0.816337 | 5.826107e-52 | -8.615850e-47 |
| Msa1123010 | Msa1365850 | 0.802368 | 5.799169e-49 | -8.615850e-47 |
| Msa1127200 | Msa1365850 | 0.807877 | 4.078607e-50 | -8.615850e-47 |
| Msa1138110 | Msa1365850 | 0.808077 | 3.696790e-50 | -8.615850e-47 |
| Msa1138440 | Msa1365850 | -0.811775 | 5.915371e-51 | -8.615850e-47 |
| Msa1138490 | Msa1365850 | -0.800514 | 1.390408e-48 | -8.615850e-47 |
| Msa1145930 | Msa1365850 | -0.809008 | 2.339482e-50 | -8.615850e-47 |
| Msa1164240 | Msa1365850 | 0.800780 | 1.227521e-48 | -8.615850e-47 |
| Msa1166530 | Msa1365850 | 0.806173 | 9.354986e-50 | -8.615850e-47 |
| Msa1170320 | Msa1365850 | 0.823495 | 1.343417e-53 | -8.615850e-47 |
| Msa1179170 | Msa1365850 | 0.810921 | 9.061182e-51 | -8.615850e-47 |
| Msa1186260 | Msa1365850 | 0.802511 | 5.420114e-49 | -8.615850e-47 |
| Msa1214960 | Msa1365850 | 0.833550 | 4.999326e-56 | -8.615850e-47 |
| Msa0491760 | Msa1365850 | 0.809633 | 1.718161e-50 | -8.615850e-47 |
| Msa0491770 | Msa1365850 | 0.806955 | 6.396844e-50 | -8.615850e-47 |
| Msa0515130 | Msa1365850 | 0.804351 | 2.252622e-49 | -8.615850e-47 |
| Msa0515150 | Msa1365850 | 0.813744 | 2.191843e-51 | -8.615850e-47 |
| Msa0535570 | Msa1365850 | 0.816586 | 5.123171e-52 | -8.615850e-47 |
| Msa0538050 | Msa1365850 | -0.808328 | 3.269536e-50 | -8.615850e-47 |
| Msa0543740 | Msa1365850 | 0.823147 | 1.619852e-53 | -8.615850e-47 |
| Msa0594330 | Msa1365850 | 0.813131 | 2.989828e-51 | -8.615850e-47 |
| Msa0854840 | Msa1365850 | 0.807790 | 4.254878e-50 | -8.615850e-47 |
| Msa0861400 | Msa1365850 | -0.813490 | 2.492853e-51 | -8.615850e-47 |
| Msa0883640 | Msa1365850 | 0.813828 | 2.100429e-51 | -8.615850e-47 |
| Msa0893840 | Msa1365850 | 0.827111 | 1.873725e-54 | -8.615850e-47 |
| Msa0896920 | Msa1365850 | 0.809861 | 1.534885e-50 | -8.615850e-47 |
| Msa0898830 | Msa1365850 | -0.801982 | 6.963638e-49 | -8.615850e-47 |
| Msa0902340 | Msa1365850 | 0.821032 | 5.009314e-53 | -8.615850e-47 |
| Msa0910830 | Msa1365850 | 0.827302 | 1.686363e-54 | -8.615850e-47 |
| Msa0960090 | Msa1365850 | 0.814919 | 1.205751e-51 | -8.615850e-47 |
| Msa0967900 | Msa1365850 | -0.809553 | 1.787900e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365850 | MtrunA17_Chr1g0200231 | 93.514 | 185 | 12 | 0 | 1 | 185 | 1 | 185 | 4.36e-129 | 360 |
| Msa1365850 | MtrunA17_Chr1g0200221 | 80.645 | 186 | 35 | 1 | 1 | 185 | 1 | 186 | 4.70e-110 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365850 | AT2G35830.2 | 63.687 | 179 | 63 | 2 | 7 | 184 | 8 | 185 | 5.31e-81 | 239 |
| Msa1365850 | AT2G35810.2 | 61.878 | 181 | 62 | 3 | 7 | 184 | 22 | 198 | 1.78e-80 | 238 |
| Msa1365850 | AT2G35810.1 | 61.878 | 181 | 62 | 3 | 7 | 184 | 22 | 198 | 1.78e-80 | 238 |
| Msa1365850 | AT2G35820.1 | 60.000 | 180 | 66 | 2 | 7 | 184 | 8 | 183 | 8.97e-78 | 231 |
| Msa1365850 | AT2G35820.2 | 60.000 | 180 | 66 | 2 | 7 | 184 | 98 | 273 | 5.06e-76 | 229 |
| Msa1365850 | AT2G35830.1 | 63.536 | 181 | 55 | 4 | 7 | 184 | 8 | 180 | 7.28e-76 | 225 |
Find 51 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCAGACAGCCTGGGTTT+TGG | 0.277909 | tig0018415:+10952 | Msa1365850:CDS |
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | tig0018415:+12090 | Msa1365850:CDS |
| CGGTGAAGCTTGACGAATTT+GGG | 0.309643 | tig0018415:-12246 | None:intergenic |
| GCGGTGAAGCTTGACGAATT+TGG | 0.316031 | tig0018415:-12247 | None:intergenic |
| CGTGAAGGTGGTGACAATTA+AGG | 0.355574 | tig0018415:+10876 | Msa1365850:CDS |
| CGAGCCTTCACCAGACAGCC+TGG | 0.372861 | tig0018415:+10945 | Msa1365850:CDS |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | tig0018415:+12082 | Msa1365850:CDS |
| ATCTCACCCAAGGGATTCCC+AGG | 0.438677 | tig0018415:+10995 | Msa1365850:CDS |
| GACCTGAAATCTTGAAAACT+TGG | 0.446401 | tig0018415:-12224 | None:intergenic |
| GGACCAAAACCCAGGCTGTC+TGG | 0.448168 | tig0018415:-10955 | None:intergenic |
| GAGATCAAGTTGAGCATCAT+GGG | 0.463032 | tig0018415:-10977 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | tig0018415:+12069 | Msa1365850:CDS |
| GTGATTCTAGAAAACTTTAG+TGG | 0.473787 | tig0018415:-12030 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | tig0018415:+12072 | Msa1365850:CDS |
| TGAGATCAAGTTGAGCATCA+TGG | 0.496448 | tig0018415:-10978 | None:intergenic |
| CAAATGTGACTCAGTGCCTT+GGG | 0.497185 | tig0018415:+12061 | Msa1365850:CDS |
| CACCGCGGTACATGGCATGC+TGG | 0.498508 | tig0018415:+12264 | Msa1365850:CDS |
| TCATTTGAATCAACAACTGA+TGG | 0.498895 | tig0018415:-12123 | None:intergenic |
| ATGAAAACCTGGGAATCCCT+TGG | 0.505985 | tig0018415:-11002 | None:intergenic |
| TCAAGCTTCACCGCGGTACA+TGG | 0.506906 | tig0018415:+12256 | Msa1365850:CDS |
| TGAAAACCTGGGAATCCCTT+GGG | 0.515492 | tig0018415:-11001 | None:intergenic |
| CCGTAGTCTTTGAAGTTCGC+CGG | 0.533633 | tig0018415:-10913 | None:intergenic |
| CATCATGGGGACCAAAACCC+AGG | 0.536245 | tig0018415:-10963 | None:intergenic |
| GCAAATGTGACTCAGTGCCT+TGG | 0.539728 | tig0018415:+12060 | Msa1365850:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | tig0018415:-12085 | None:intergenic |
| GAGCCTTCACCAGACAGCCT+GGG | 0.557955 | tig0018415:+10946 | Msa1365850:CDS |
| AAACCCAGGCTGTCTGGTGA+AGG | 0.563612 | tig0018415:-10949 | None:intergenic |
| AATGAAATCAAAGATGACTC+AGG | 0.574790 | tig0018415:+12141 | Msa1365850:CDS |
| TGATTCTAGAAAACTTTAGT+GGG | 0.575199 | tig0018415:-12029 | None:intergenic |
| TAAGGCGATCGAAGCAACTC+CGG | 0.581240 | tig0018415:+10894 | Msa1365850:CDS |
| TTATGTTCCTCCCACCGTTG+AGG | 0.588581 | tig0018415:+12197 | Msa1365850:CDS |
| CACAACTTTAAGAATGACAA+TGG | 0.590296 | tig0018415:+12521 | Msa1365850:CDS |
| GCTCAACTTGATCTCACCCA+AGG | 0.590549 | tig0018415:+10985 | Msa1365850:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | tig0018415:+12095 | Msa1365850:CDS |
| AACTTGGACGTCCTCAACGG+TGG | 0.605196 | tig0018415:-12208 | None:intergenic |
| GAACTTCAAAGACTACGGTC+AGG | 0.607170 | tig0018415:+10918 | Msa1365850:CDS |
| AATAATGGAGAGCGTGAAGG+TGG | 0.607965 | tig0018415:+10864 | None:intergenic |
| CTCAACTTGATCTCACCCAA+GGG | 0.620590 | tig0018415:+10986 | Msa1365850:CDS |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | tig0018415:-12077 | None:intergenic |
| AATAATAATGGAGAGCGTGA+AGG | 0.623264 | tig0018415:+10861 | None:intergenic |
| GAAAACTTGGACGTCCTCAA+CGG | 0.628183 | tig0018415:-12211 | None:intergenic |
| CCGGCGAACTTCAAAGACTA+CGG | 0.628730 | tig0018415:+10913 | Msa1365850:CDS |
| TGGACGTCCTCAACGGTGGG+AGG | 0.630671 | tig0018415:-12204 | None:intergenic |
| ACTTGGACGTCCTCAACGGT+GGG | 0.633042 | tig0018415:-12207 | None:intergenic |
| ATCGTGCTAGACTTAAATAG+AGG | 0.664302 | tig0018415:-12288 | None:intergenic |
| TCTATTTAAGTCTAGCACGA+TGG | 0.669627 | tig0018415:+12290 | Msa1365850:CDS |
| GACCAGCATGCCATGTACCG+CGG | 0.687313 | tig0018415:-12266 | None:intergenic |
| ACGGTCGTTAAGTCGTGCGG+CGG | 0.689464 | tig0018415:+12168 | Msa1365850:CDS |
| AAAACGGTCGTTAAGTCGTG+CGG | 0.693454 | tig0018415:+12165 | Msa1365850:CDS |
| AGATCAAGTTGAGCATCATG+GGG | 0.694936 | tig0018415:-10976 | None:intergenic |
| AAATTCGTCAAGCTTCACCG+CGG | 0.805303 | tig0018415:+12249 | Msa1365850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAACATATAGAATT+TGG | - | tig0018415:11062-11081 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+TGG | + | tig0018415:11084-11103 | Msa1365850:intron | 10.0% |
| !!! | TTTTTTTCACTTTAATTTTT+GGG | + | tig0018415:11085-11104 | Msa1365850:intron | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | tig0018415:11970-11989 | None:intergenic | 10.0% |
| !!! | TTATTTTGTCATTTTTTTAA+TGG | + | tig0018415:12445-12464 | Msa1365850:intron | 10.0% |
| !! | AAAAATTAACATATAGAATT+TGG | - | tig0018415:11062-11081 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+TGG | + | tig0018415:11084-11103 | Msa1365850:intron | 10.0% |
| !!! | TTTTTTTCACTTTAATTTTT+GGG | + | tig0018415:11085-11104 | Msa1365850:intron | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | tig0018415:11970-11989 | None:intergenic | 10.0% |
| !!! | TTATTTTGTCATTTTTTTAA+TGG | + | tig0018415:12445-12464 | Msa1365850:intron | 10.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | tig0018415:11034-11053 | None:intergenic | 15.0% |
| !! | AGGAAATATATATATGATAA+TGG | - | tig0018415:11472-11491 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | tig0018415:11578-11597 | Msa1365850:intron | 15.0% |
| !! | AAAAGGAAACAAAAAAAAAA+AGG | - | tig0018415:11704-11723 | None:intergenic | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | tig0018415:11967-11986 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | tig0018415:11034-11053 | None:intergenic | 15.0% |
| !! | AGGAAATATATATATGATAA+TGG | - | tig0018415:11472-11491 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | tig0018415:11578-11597 | Msa1365850:intron | 15.0% |
| !! | AAAAGGAAACAAAAAAAAAA+AGG | - | tig0018415:11704-11723 | None:intergenic | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | tig0018415:11967-11986 | None:intergenic | 15.0% |
| !! | TCTTAGAAAAAATGAAGAAT+AGG | + | tig0018415:11260-11279 | Msa1365850:intron | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | tig0018415:11293-11312 | Msa1365850:intron | 20.0% |
| !!! | CCAATAATATATAGTTTTGA+CGG | - | tig0018415:11377-11396 | None:intergenic | 20.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | tig0018415:11436-11455 | None:intergenic | 20.0% |
| !!! | AATTTTGCTATAAAGTAGTT+TGG | - | tig0018415:11786-11805 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | tig0018415:11980-11999 | Msa1365850:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | tig0018415:12337-12356 | None:intergenic | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | tig0018415:12336-12355 | Msa1365850:intron | 20.0% |
| !!! | TTGTCATTTTTTTAATGGTT+TGG | + | tig0018415:12450-12469 | Msa1365850:intron | 20.0% |
| !! | TCTTAGAAAAAATGAAGAAT+AGG | + | tig0018415:11260-11279 | Msa1365850:intron | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | tig0018415:11293-11312 | Msa1365850:intron | 20.0% |
| !!! | CCAATAATATATAGTTTTGA+CGG | - | tig0018415:11377-11396 | None:intergenic | 20.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | tig0018415:11436-11455 | None:intergenic | 20.0% |
| !!! | AATTTTGCTATAAAGTAGTT+TGG | - | tig0018415:11786-11805 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | tig0018415:11980-11999 | Msa1365850:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | tig0018415:12337-12356 | None:intergenic | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | tig0018415:12336-12355 | Msa1365850:intron | 20.0% |
| !!! | TTGTCATTTTTTTAATGGTT+TGG | + | tig0018415:12450-12469 | Msa1365850:intron | 20.0% |
| !!! | TTTCACTTTAATTTTTGGGT+TGG | + | tig0018415:11089-11108 | Msa1365850:intron | 25.0% |
| ! | CCGTCAAAACTATATATTAT+TGG | + | tig0018415:11374-11393 | Msa1365850:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | tig0018415:11413-11432 | None:intergenic | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | tig0018415:11492-11511 | None:intergenic | 25.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | tig0018415:11615-11634 | Msa1365850:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | tig0018415:11616-11635 | Msa1365850:intron | 25.0% |
| ! | TTTATCCATATAGCATCAAA+AGG | - | tig0018415:11721-11740 | None:intergenic | 25.0% |
| ! | TATATACTACCCTATTATCT+TGG | + | tig0018415:11747-11766 | Msa1365850:intron | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | tig0018415:11789-11808 | Msa1365850:intron | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | tig0018415:12032-12051 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | tig0018415:12481-12500 | Msa1365850:intron | 25.0% |
| !!! | TTTCACTTTAATTTTTGGGT+TGG | + | tig0018415:11089-11108 | Msa1365850:intron | 25.0% |
| ! | CCGTCAAAACTATATATTAT+TGG | + | tig0018415:11374-11393 | Msa1365850:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | tig0018415:11413-11432 | None:intergenic | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | tig0018415:11492-11511 | None:intergenic | 25.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | tig0018415:11615-11634 | Msa1365850:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | tig0018415:11616-11635 | Msa1365850:intron | 25.0% |
| ! | TTTATCCATATAGCATCAAA+AGG | - | tig0018415:11721-11740 | None:intergenic | 25.0% |
| ! | TATATACTACCCTATTATCT+TGG | + | tig0018415:11747-11766 | Msa1365850:intron | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | tig0018415:11789-11808 | Msa1365850:intron | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | tig0018415:12032-12051 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | tig0018415:12481-12500 | Msa1365850:intron | 25.0% |
| TTGGTGAAATATGAAAACCT+GGG | - | tig0018415:11015-11034 | None:intergenic | 30.0% | |
| TACCTATGATTAAGATCGAA+CGG | - | tig0018415:11161-11180 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | tig0018415:11624-11643 | Msa1365850:intron | 30.0% | |
| ! | TGTTTCCTTTTGATGCTATA+TGG | + | tig0018415:11713-11732 | Msa1365850:intron | 30.0% |
| ! | TTTGCTATAAAGTAGTTTGG+TGG | - | tig0018415:11783-11802 | None:intergenic | 30.0% |
| TATCAGTTAAATTGAGCTGA+TGG | - | tig0018415:11890-11909 | None:intergenic | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | tig0018415:11961-11980 | None:intergenic | 30.0% | |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | tig0018415:12033-12052 | None:intergenic | 30.0% |
| TCATTTGAATCAACAACTGA+TGG | - | tig0018415:12126-12145 | None:intergenic | 30.0% | |
| AATGAAATCAAAGATGACTC+AGG | + | tig0018415:12141-12160 | Msa1365850:CDS | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | tig0018415:12362-12381 | None:intergenic | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | tig0018415:12363-12382 | None:intergenic | 30.0% | |
| AGATGTAAGATTCCATTGAA+AGG | - | tig0018415:12364-12383 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | tig0018415:12521-12540 | Msa1365850:CDS | 30.0% |
| TTGGTGAAATATGAAAACCT+GGG | - | tig0018415:11015-11034 | None:intergenic | 30.0% | |
| TACCTATGATTAAGATCGAA+CGG | - | tig0018415:11161-11180 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | tig0018415:11624-11643 | Msa1365850:intron | 30.0% | |
| ! | TGTTTCCTTTTGATGCTATA+TGG | + | tig0018415:11713-11732 | Msa1365850:intron | 30.0% |
| ! | TTTGCTATAAAGTAGTTTGG+TGG | - | tig0018415:11783-11802 | None:intergenic | 30.0% |
| TATCAGTTAAATTGAGCTGA+TGG | - | tig0018415:11890-11909 | None:intergenic | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | tig0018415:11961-11980 | None:intergenic | 30.0% | |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | tig0018415:12033-12052 | None:intergenic | 30.0% |
| TCATTTGAATCAACAACTGA+TGG | - | tig0018415:12126-12145 | None:intergenic | 30.0% | |
| AATGAAATCAAAGATGACTC+AGG | + | tig0018415:12141-12160 | Msa1365850:CDS | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | tig0018415:12362-12381 | None:intergenic | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | tig0018415:12363-12382 | None:intergenic | 30.0% | |
| AGATGTAAGATTCCATTGAA+AGG | - | tig0018415:12364-12383 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | tig0018415:12521-12540 | Msa1365850:CDS | 30.0% |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | tig0018415:11016-11035 | None:intergenic | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | tig0018415:11102-11121 | Msa1365850:intron | 35.0% |
| AACCGTTCGATCTTAATCAT+AGG | + | tig0018415:11156-11175 | Msa1365850:intron | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | tig0018415:11623-11642 | Msa1365850:intron | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | tig0018415:11647-11666 | Msa1365850:intron | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | tig0018415:11648-11667 | Msa1365850:intron | 35.0% | |
| ! | CTATAAAGTAGTTTGGTGGT+GGG | - | tig0018415:11779-11798 | None:intergenic | 35.0% |
| TATAGCAAAATTGAGAGGCT+AGG | + | tig0018415:11794-11813 | Msa1365850:intron | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | tig0018415:11834-11853 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | tig0018415:12088-12107 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | tig0018415:12095-12114 | Msa1365850:CDS | 35.0% | |
| CAAAGATGACTCAGGAAAAA+CGG | + | tig0018415:12149-12168 | Msa1365850:CDS | 35.0% | |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | tig0018415:12222-12241 | Msa1365850:CDS | 35.0% |
| GACCTGAAATCTTGAAAACT+TGG | - | tig0018415:12227-12246 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | tig0018415:12291-12310 | None:intergenic | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | tig0018415:12290-12309 | Msa1365850:CDS | 35.0% | |
| !! | GGACTTTTACAATCTAGAGT+TGG | + | tig0018415:12311-12330 | Msa1365850:CDS | 35.0% |
| AGAGCATGTCAAATGAATTC+AGG | - | tig0018415:12395-12414 | None:intergenic | 35.0% | |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | tig0018415:12408-12427 | Msa1365850:intron | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | tig0018415:12409-12428 | Msa1365850:intron | 35.0% |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | tig0018415:11016-11035 | None:intergenic | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | tig0018415:11102-11121 | Msa1365850:intron | 35.0% |
| AACCGTTCGATCTTAATCAT+AGG | + | tig0018415:11156-11175 | Msa1365850:intron | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | tig0018415:11623-11642 | Msa1365850:intron | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | tig0018415:11647-11666 | Msa1365850:intron | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | tig0018415:11648-11667 | Msa1365850:intron | 35.0% | |
| ! | CTATAAAGTAGTTTGGTGGT+GGG | - | tig0018415:11779-11798 | None:intergenic | 35.0% |
| TATAGCAAAATTGAGAGGCT+AGG | + | tig0018415:11794-11813 | Msa1365850:intron | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | tig0018415:11834-11853 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | tig0018415:12088-12107 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | tig0018415:12095-12114 | Msa1365850:CDS | 35.0% | |
| CAAAGATGACTCAGGAAAAA+CGG | + | tig0018415:12149-12168 | Msa1365850:CDS | 35.0% | |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | tig0018415:12222-12241 | Msa1365850:CDS | 35.0% |
| GACCTGAAATCTTGAAAACT+TGG | - | tig0018415:12227-12246 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | tig0018415:12291-12310 | None:intergenic | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | tig0018415:12290-12309 | Msa1365850:CDS | 35.0% | |
| !! | GGACTTTTACAATCTAGAGT+TGG | + | tig0018415:12311-12330 | Msa1365850:CDS | 35.0% |
| AGAGCATGTCAAATGAATTC+AGG | - | tig0018415:12395-12414 | None:intergenic | 35.0% | |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | tig0018415:12408-12427 | Msa1365850:intron | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | tig0018415:12409-12428 | Msa1365850:intron | 35.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | tig0018415:10979-10998 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | tig0018415:10980-10999 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | tig0018415:10981-11000 | None:intergenic | 40.0% |
| CAACCCAAACAGTGTAAACT+TGG | - | tig0018415:11654-11673 | None:intergenic | 40.0% | |
| ! | ATCTTGAGATGAAGAGCACA+AGG | + | tig0018415:11675-11694 | Msa1365850:intron | 40.0% |
| GGGTGAATGCCAAGATAATA+GGG | - | tig0018415:11759-11778 | None:intergenic | 40.0% | |
| TGGGTGAATGCCAAGATAAT+AGG | - | tig0018415:11760-11779 | None:intergenic | 40.0% | |
| ! | GCTATAAAGTAGTTTGGTGG+TGG | - | tig0018415:11780-11799 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | tig0018415:12090-12109 | Msa1365850:CDS | 40.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | tig0018415:10979-10998 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | tig0018415:10980-10999 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | tig0018415:10981-11000 | None:intergenic | 40.0% |
| CAACCCAAACAGTGTAAACT+TGG | - | tig0018415:11654-11673 | None:intergenic | 40.0% | |
| ! | ATCTTGAGATGAAGAGCACA+AGG | + | tig0018415:11675-11694 | Msa1365850:intron | 40.0% |
| GGGTGAATGCCAAGATAATA+GGG | - | tig0018415:11759-11778 | None:intergenic | 40.0% | |
| TGGGTGAATGCCAAGATAAT+AGG | - | tig0018415:11760-11779 | None:intergenic | 40.0% | |
| ! | GCTATAAAGTAGTTTGGTGG+TGG | - | tig0018415:11780-11799 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | tig0018415:12090-12109 | Msa1365850:CDS | 40.0% |
| CGTGAAGGTGGTGACAATTA+AGG | + | tig0018415:10876-10895 | Msa1365850:CDS | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | tig0018415:10918-10937 | Msa1365850:CDS | 45.0% | |
| CTCAACTTGATCTCACCCAA+GGG | + | tig0018415:10986-11005 | Msa1365850:CDS | 45.0% | |
| TGAAAACCTGGGAATCCCTT+GGG | - | tig0018415:11004-11023 | None:intergenic | 45.0% | |
| ATGAAAACCTGGGAATCCCT+TGG | - | tig0018415:11005-11024 | None:intergenic | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | tig0018415:11797-11816 | Msa1365850:intron | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | tig0018415:11805-11824 | Msa1365850:intron | 45.0% | |
| CAAATGTGACTCAGTGCCTT+GGG | + | tig0018415:12061-12080 | Msa1365850:CDS | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | tig0018415:12082-12101 | Msa1365850:CDS | 45.0% |
| AAAACGGTCGTTAAGTCGTG+CGG | + | tig0018415:12165-12184 | Msa1365850:CDS | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | tig0018415:12214-12233 | None:intergenic | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | tig0018415:12249-12268 | None:intergenic | 45.0% | |
| AAATTCGTCAAGCTTCACCG+CGG | + | tig0018415:12249-12268 | Msa1365850:CDS | 45.0% | |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | tig0018415:12349-12368 | Msa1365850:intron | 45.0% |
| CGTGAAGGTGGTGACAATTA+AGG | + | tig0018415:10876-10895 | Msa1365850:CDS | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | tig0018415:10918-10937 | Msa1365850:CDS | 45.0% | |
| CTCAACTTGATCTCACCCAA+GGG | + | tig0018415:10986-11005 | Msa1365850:CDS | 45.0% | |
| TGAAAACCTGGGAATCCCTT+GGG | - | tig0018415:11004-11023 | None:intergenic | 45.0% | |
| ATGAAAACCTGGGAATCCCT+TGG | - | tig0018415:11005-11024 | None:intergenic | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | tig0018415:11797-11816 | Msa1365850:intron | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | tig0018415:11805-11824 | Msa1365850:intron | 45.0% | |
| CAAATGTGACTCAGTGCCTT+GGG | + | tig0018415:12061-12080 | Msa1365850:CDS | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | tig0018415:12082-12101 | Msa1365850:CDS | 45.0% |
| AAAACGGTCGTTAAGTCGTG+CGG | + | tig0018415:12165-12184 | Msa1365850:CDS | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | tig0018415:12214-12233 | None:intergenic | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | tig0018415:12249-12268 | None:intergenic | 45.0% | |
| AAATTCGTCAAGCTTCACCG+CGG | + | tig0018415:12249-12268 | Msa1365850:CDS | 45.0% | |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | tig0018415:12349-12368 | Msa1365850:intron | 45.0% |
| TAAGGCGATCGAAGCAACTC+CGG | + | tig0018415:10894-10913 | Msa1365850:CDS | 50.0% | |
| !! | CCGTAGTCTTTGAAGTTCGC+CGG | - | tig0018415:10916-10935 | None:intergenic | 50.0% |
| CCGGCGAACTTCAAAGACTA+CGG | + | tig0018415:10913-10932 | Msa1365850:CDS | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | tig0018415:10985-11004 | Msa1365850:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+TGG | + | tig0018415:12060-12079 | Msa1365850:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | tig0018415:12080-12099 | None:intergenic | 50.0% | |
| TTATGTTCCTCCCACCGTTG+AGG | + | tig0018415:12197-12216 | Msa1365850:CDS | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | tig0018415:12250-12269 | None:intergenic | 50.0% | |
| TAAGGCGATCGAAGCAACTC+CGG | + | tig0018415:10894-10913 | Msa1365850:CDS | 50.0% | |
| !! | CCGTAGTCTTTGAAGTTCGC+CGG | - | tig0018415:10916-10935 | None:intergenic | 50.0% |
| CCGGCGAACTTCAAAGACTA+CGG | + | tig0018415:10913-10932 | Msa1365850:CDS | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | tig0018415:10985-11004 | Msa1365850:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+TGG | + | tig0018415:12060-12079 | Msa1365850:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | tig0018415:12080-12099 | None:intergenic | 50.0% | |
| TTATGTTCCTCCCACCGTTG+AGG | + | tig0018415:12197-12216 | Msa1365850:CDS | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | tig0018415:12250-12269 | None:intergenic | 50.0% | |
| AAACCCAGGCTGTCTGGTGA+AGG | - | tig0018415:10952-10971 | None:intergenic | 55.0% | |
| ! | TCACCAGACAGCCTGGGTTT+TGG | + | tig0018415:10952-10971 | Msa1365850:CDS | 55.0% |
| CATCATGGGGACCAAAACCC+AGG | - | tig0018415:10966-10985 | None:intergenic | 55.0% | |
| ATCTCACCCAAGGGATTCCC+AGG | + | tig0018415:10995-11014 | Msa1365850:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | tig0018415:12069-12088 | Msa1365850:CDS | 55.0% | |
| ACTTGGACGTCCTCAACGGT+GGG | - | tig0018415:12210-12229 | None:intergenic | 55.0% | |
| AACTTGGACGTCCTCAACGG+TGG | - | tig0018415:12211-12230 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | tig0018415:12256-12275 | Msa1365850:CDS | 55.0% | |
| AAACCCAGGCTGTCTGGTGA+AGG | - | tig0018415:10952-10971 | None:intergenic | 55.0% | |
| ! | TCACCAGACAGCCTGGGTTT+TGG | + | tig0018415:10952-10971 | Msa1365850:CDS | 55.0% |
| CATCATGGGGACCAAAACCC+AGG | - | tig0018415:10966-10985 | None:intergenic | 55.0% | |
| ATCTCACCCAAGGGATTCCC+AGG | + | tig0018415:10995-11014 | Msa1365850:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | tig0018415:12069-12088 | Msa1365850:CDS | 55.0% | |
| ACTTGGACGTCCTCAACGGT+GGG | - | tig0018415:12210-12229 | None:intergenic | 55.0% | |
| AACTTGGACGTCCTCAACGG+TGG | - | tig0018415:12211-12230 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | tig0018415:12256-12275 | Msa1365850:CDS | 55.0% | |
| GAGCCTTCACCAGACAGCCT+GGG | + | tig0018415:10946-10965 | Msa1365850:CDS | 60.0% | |
| GGACCAAAACCCAGGCTGTC+TGG | - | tig0018415:10958-10977 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | tig0018415:12072-12091 | Msa1365850:CDS | 60.0% | |
| ACGGTCGTTAAGTCGTGCGG+CGG | + | tig0018415:12168-12187 | Msa1365850:CDS | 60.0% | |
| GACCAGCATGCCATGTACCG+CGG | - | tig0018415:12269-12288 | None:intergenic | 60.0% | |
| GAGCCTTCACCAGACAGCCT+GGG | + | tig0018415:10946-10965 | Msa1365850:CDS | 60.0% | |
| GGACCAAAACCCAGGCTGTC+TGG | - | tig0018415:10958-10977 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | tig0018415:12072-12091 | Msa1365850:CDS | 60.0% | |
| ACGGTCGTTAAGTCGTGCGG+CGG | + | tig0018415:12168-12187 | Msa1365850:CDS | 60.0% | |
| GACCAGCATGCCATGTACCG+CGG | - | tig0018415:12269-12288 | None:intergenic | 60.0% | |
| CGAGCCTTCACCAGACAGCC+TGG | + | tig0018415:10945-10964 | Msa1365850:CDS | 65.0% | |
| TGGACGTCCTCAACGGTGGG+AGG | - | tig0018415:12207-12226 | None:intergenic | 65.0% | |
| CACCGCGGTACATGGCATGC+TGG | + | tig0018415:12264-12283 | Msa1365850:CDS | 65.0% | |
| CGAGCCTTCACCAGACAGCC+TGG | + | tig0018415:10945-10964 | Msa1365850:CDS | 65.0% | |
| TGGACGTCCTCAACGGTGGG+AGG | - | tig0018415:12207-12226 | None:intergenic | 65.0% | |
| CACCGCGGTACATGGCATGC+TGG | + | tig0018415:12264-12283 | Msa1365850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018415 | gene | 10868 | 12568 | 10868 | ID=Msa1365850;Name=Msa1365850 |
| tig0018415 | mRNA | 10868 | 12568 | 10868 | ID=Msa1365850-mRNA-1;Parent=Msa1365850;Name=Msa1365850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|185 |
| tig0018415 | exon | 10868 | 11016 | 10868 | ID=Msa1365850-mRNA-1:exon:14855;Parent=Msa1365850-mRNA-1 |
| tig0018415 | exon | 12002 | 12344 | 12002 | ID=Msa1365850-mRNA-1:exon:14856;Parent=Msa1365850-mRNA-1 |
| tig0018415 | exon | 12503 | 12568 | 12503 | ID=Msa1365850-mRNA-1:exon:14857;Parent=Msa1365850-mRNA-1 |
| tig0018415 | CDS | 10868 | 11016 | 10868 | ID=Msa1365850-mRNA-1:cds;Parent=Msa1365850-mRNA-1 |
| tig0018415 | CDS | 12002 | 12344 | 12002 | ID=Msa1365850-mRNA-1:cds;Parent=Msa1365850-mRNA-1 |
| tig0018415 | CDS | 12503 | 12568 | 12503 | ID=Msa1365850-mRNA-1:cds;Parent=Msa1365850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
