Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329920 | XP_013457945.1 | 97.701 | 174 | 4 | 0 | 1 | 174 | 1 | 174 | 3.14e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329920 | sp|Q9M015|Y5161_ARATH | 45.977 | 174 | 90 | 2 | 1 | 174 | 1 | 170 | 1.47e-51 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329920 | I3S9Q8 | 97.701 | 174 | 4 | 0 | 1 | 174 | 1 | 174 | 1.50e-121 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1329920 | 0.809690 | 1.670504e-50 | -8.615850e-47 |
| Msa0025330 | Msa1329920 | 0.800569 | 1.355295e-48 | -8.615850e-47 |
| Msa0044020 | Msa1329920 | 0.819549 | 1.095723e-52 | -8.615850e-47 |
| Msa0046750 | Msa1329920 | 0.804186 | 2.437110e-49 | -8.615850e-47 |
| Msa0052080 | Msa1329920 | 0.802508 | 5.426079e-49 | -8.615850e-47 |
| Msa0072370 | Msa1329920 | 0.820047 | 8.431466e-53 | -8.615850e-47 |
| Msa0076310 | Msa1329920 | 0.808703 | 2.719128e-50 | -8.615850e-47 |
| Msa0105420 | Msa1329920 | 0.805026 | 1.628111e-49 | -8.615850e-47 |
| Msa0110970 | Msa1329920 | 0.809106 | 2.228635e-50 | -8.615850e-47 |
| Msa0604360 | Msa1329920 | 0.811213 | 7.834552e-51 | -8.615850e-47 |
| Msa0628640 | Msa1329920 | 0.808045 | 3.755146e-50 | -8.615850e-47 |
| Msa0631120 | Msa1329920 | 0.835166 | 1.965776e-56 | -8.615850e-47 |
| Msa0647130 | Msa1329920 | 0.812614 | 3.879992e-51 | -8.615850e-47 |
| Msa0669340 | Msa1329920 | 0.817598 | 3.034818e-52 | -8.615850e-47 |
| Msa0684500 | Msa1329920 | 0.814137 | 1.795923e-51 | -8.615850e-47 |
| Msa0708520 | Msa1329920 | 0.808399 | 3.157625e-50 | -8.615850e-47 |
| Msa0716450 | Msa1329920 | 0.832986 | 6.909154e-56 | -8.615850e-47 |
| Msa0717260 | Msa1329920 | 0.818538 | 1.860668e-52 | -8.615850e-47 |
| Msa0758320 | Msa1329920 | 0.822952 | 1.798995e-53 | -8.615850e-47 |
| Msa0760380 | Msa1329920 | 0.829770 | 4.274665e-55 | -8.615850e-47 |
| Msa0775440 | Msa1329920 | 0.813736 | 2.201470e-51 | -8.615850e-47 |
| Msa0799030 | Msa1329920 | 0.829160 | 6.011525e-55 | -8.615850e-47 |
| Msa0799700 | Msa1329920 | 0.812722 | 3.674800e-51 | -8.615850e-47 |
| Msa0822990 | Msa1329920 | 0.808225 | 3.437937e-50 | -8.615850e-47 |
| Msa0837440 | Msa1329920 | 0.844087 | 9.395291e-59 | -8.615850e-47 |
| Msa0837980 | Msa1329920 | 0.825328 | 4.976629e-54 | -8.615850e-47 |
| Msa0124340 | Msa1329920 | 0.814339 | 1.620036e-51 | -8.615850e-47 |
| Msa0130570 | Msa1329920 | 0.805193 | 1.502334e-49 | -8.615850e-47 |
| Msa0141100 | Msa1329920 | 0.846094 | 2.695683e-59 | -8.615850e-47 |
| Msa0157290 | Msa1329920 | 0.809648 | 1.705466e-50 | -8.615850e-47 |
| Msa0163980 | Msa1329920 | 0.805609 | 1.229174e-49 | -8.615850e-47 |
| Msa0220300 | Msa1329920 | 0.809629 | 1.721754e-50 | -8.615850e-47 |
| Msa1228210 | Msa1329920 | 0.800865 | 1.179146e-48 | -8.615850e-47 |
| Msa1255280 | Msa1329920 | 0.809908 | 1.499423e-50 | -8.615850e-47 |
| Msa1260040 | Msa1329920 | 0.932442 | 8.469827e-95 | -8.615850e-47 |
| Msa1266960 | Msa1329920 | 0.819632 | 1.048811e-52 | -8.615850e-47 |
| Msa1271290 | Msa1329920 | 0.804274 | 2.337331e-49 | -8.615850e-47 |
| Msa1271300 | Msa1329920 | 0.804890 | 1.738285e-49 | -8.615850e-47 |
| Msa1308380 | Msa1329920 | 0.812064 | 5.117267e-51 | -8.615850e-47 |
| Msa1329920 | Msa1395870 | 0.815951 | 7.103696e-52 | -8.615850e-47 |
| Msa1329920 | Msa1399560 | 0.816745 | 4.719153e-52 | -8.615850e-47 |
| Msa1329920 | Msa1427760 | 0.807693 | 4.461545e-50 | -8.615850e-47 |
| Msa0374850 | Msa1329920 | 0.852383 | 4.784342e-61 | -8.615850e-47 |
| Msa0375090 | Msa1329920 | 0.846738 | 1.798070e-59 | -8.615850e-47 |
| Msa0423360 | Msa1329920 | -0.801635 | 8.204073e-49 | -8.615850e-47 |
| Msa0470340 | Msa1329920 | 0.817883 | 2.617395e-52 | -8.615850e-47 |
| Msa0470860 | Msa1329920 | 0.827674 | 1.373261e-54 | -8.615850e-47 |
| Msa1002620 | Msa1329920 | 0.832746 | 7.928666e-56 | -8.615850e-47 |
| Msa1019020 | Msa1329920 | 0.801746 | 7.783592e-49 | -8.615850e-47 |
| Msa1040120 | Msa1329920 | 0.805856 | 1.090859e-49 | -8.615850e-47 |
| Msa1069100 | Msa1329920 | 0.800484 | 1.410382e-48 | -8.615850e-47 |
| Msa1098560 | Msa1329920 | 0.809871 | 1.527052e-50 | -8.615850e-47 |
| Msa0315250 | Msa1329920 | 0.812550 | 4.006646e-51 | -8.615850e-47 |
| Msa0316850 | Msa1329920 | 0.800659 | 1.299056e-48 | -8.615850e-47 |
| Msa0349080 | Msa1329920 | 0.809892 | 1.511490e-50 | -8.615850e-47 |
| Msa1113850 | Msa1329920 | 0.804647 | 1.953980e-49 | -8.615850e-47 |
| Msa1201470 | Msa1329920 | 0.809261 | 2.065451e-50 | -8.615850e-47 |
| Msa1212440 | Msa1329920 | 0.823809 | 1.133912e-53 | -8.615850e-47 |
| Msa1219260 | Msa1329920 | 0.821582 | 3.739727e-53 | -8.615850e-47 |
| Msa1222970 | Msa1329920 | 0.804535 | 2.061463e-49 | -8.615850e-47 |
| Msa0491040 | Msa1329920 | 0.800714 | 1.266275e-48 | -8.615850e-47 |
| Msa0503580 | Msa1329920 | 0.801650 | 8.147797e-49 | -8.615850e-47 |
| Msa0505770 | Msa1329920 | 0.800385 | 1.477583e-48 | -8.615850e-47 |
| Msa0531430 | Msa1329920 | 0.815515 | 8.884730e-52 | -8.615850e-47 |
| Msa0534590 | Msa1329920 | 0.821521 | 3.863007e-53 | -8.615850e-47 |
| Msa0548620 | Msa1329920 | 0.801558 | 8.506607e-49 | -8.615850e-47 |
| Msa0548660 | Msa1329920 | 0.814912 | 1.209613e-51 | -8.615850e-47 |
| Msa0590800 | Msa1329920 | 0.821265 | 4.426384e-53 | -8.615850e-47 |
| Msa0853320 | Msa1329920 | 0.813927 | 1.997719e-51 | -8.615850e-47 |
| Msa0862100 | Msa1329920 | 0.802921 | 4.460103e-49 | -8.615850e-47 |
| Msa0880140 | Msa1329920 | 0.810252 | 1.264541e-50 | -8.615850e-47 |
| Msa0936270 | Msa1329920 | 0.815892 | 7.322696e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329920 | MtrunA17_Chr4g0061181 | 97.701 | 174 | 4 | 0 | 1 | 174 | 1 | 174 | 2.88e-125 | 349 |
| Msa1329920 | MtrunA17_Chr5g0418311 | 63.536 | 181 | 58 | 2 | 1 | 174 | 1 | 180 | 1.09e-80 | 237 |
| Msa1329920 | MtrunA17_Chr4g0005561 | 45.977 | 174 | 90 | 1 | 1 | 174 | 1 | 170 | 3.22e-55 | 172 |
| Msa1329920 | MtrunA17_Chr7g0243261 | 47.126 | 174 | 88 | 1 | 1 | 174 | 1 | 170 | 2.56e-54 | 169 |
| Msa1329920 | MtrunA17_Chr4g0048871 | 34.831 | 89 | 55 | 2 | 51 | 138 | 28 | 114 | 5.80e-12 | 60.8 |
| Msa1329920 | MtrunA17_Chr8g0378501 | 32.500 | 120 | 73 | 5 | 49 | 163 | 22 | 138 | 5.82e-12 | 60.8 |
| Msa1329920 | MtrunA17_Chr4g0048861 | 33.333 | 108 | 67 | 4 | 41 | 146 | 17 | 121 | 2.10e-11 | 58.9 |
| Msa1329920 | MtrunA17_Chr7g0234601 | 29.060 | 117 | 79 | 3 | 56 | 171 | 38 | 151 | 3.44e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329920 | AT2G03350.1 | 65.341 | 176 | 55 | 2 | 1 | 171 | 1 | 175 | 1.10e-78 | 232 |
| Msa1329920 | AT5G37070.1 | 48.851 | 174 | 85 | 2 | 1 | 174 | 1 | 170 | 2.18e-56 | 175 |
| Msa1329920 | AT3G08890.1 | 48.276 | 174 | 86 | 2 | 1 | 174 | 1 | 170 | 2.94e-55 | 172 |
| Msa1329920 | AT3G08890.2 | 48.276 | 174 | 86 | 2 | 1 | 174 | 1 | 170 | 2.94e-55 | 172 |
| Msa1329920 | AT5G01610.2 | 45.977 | 174 | 90 | 2 | 1 | 174 | 1 | 170 | 1.49e-52 | 165 |
| Msa1329920 | AT5G01610.1 | 45.977 | 174 | 90 | 2 | 1 | 174 | 1 | 170 | 1.49e-52 | 165 |
| Msa1329920 | AT1G61667.1 | 30.894 | 123 | 70 | 4 | 50 | 165 | 18 | 132 | 5.77e-12 | 60.8 |
| Msa1329920 | AT1G61667.2 | 30.894 | 123 | 70 | 4 | 50 | 165 | 54 | 168 | 1.34e-11 | 60.8 |
| Msa1329920 | AT5G16380.1 | 25.185 | 135 | 98 | 2 | 39 | 172 | 16 | 148 | 1.96e-11 | 60.5 |
Find 59 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCTTCCTTGGCTTTCT+TGG | 0.159151 | 8_4:-48867343 | None:intergenic |
| TAAAATTTCTCACGTTGATT+TGG | 0.251703 | 8_4:-48866183 | None:intergenic |
| GGATAAAGCTATGACTAAAC+TGG | 0.259672 | 8_4:+48867305 | Msa1329920:CDS |
| TGACTAAACTGGGAAGCTTT+TGG | 0.282276 | 8_4:+48867316 | Msa1329920:CDS |
| AATCATCAGGGAAGAAGATT+TGG | 0.314679 | 8_4:-48869079 | None:intergenic |
| TCAGTGTTTATTAGTGTGTT+AGG | 0.317795 | 8_4:+48869032 | Msa1329920:three_prime_UTR |
| ATTTGTATGTGTGACTTTAG+AGG | 0.325150 | 8_4:+48868917 | Msa1329920:three_prime_UTR |
| GGAAAACTCATTGTTATAGA+TGG | 0.353422 | 8_4:+48868680 | Msa1329920:CDS |
| CAAGGTTCTTGTGTGGGTTA+AGG | 0.357016 | 8_4:+48868712 | Msa1329920:CDS |
| CCCTTCTGAGGTATGCTTCA+AGG | 0.368099 | 8_4:+48868607 | Msa1329920:CDS |
| CACACACCATTTGTGGAGAT+TGG | 0.371485 | 8_4:+48866095 | None:intergenic |
| AAAATGTATAATCAATCATC+AGG | 0.381146 | 8_4:-48869092 | None:intergenic |
| AATCATTACCAGATCTCCTT+AGG | 0.387760 | 8_4:+48868492 | Msa1329920:CDS |
| CTCGTAGCATGTTATATTAC+GGG | 0.393055 | 8_4:-48868543 | None:intergenic |
| GACTTAGAGTGTCACTATCT+TGG | 0.406177 | 8_4:-48867216 | None:intergenic |
| ACTCGTAGCATGTTATATTA+CGG | 0.409672 | 8_4:-48868544 | None:intergenic |
| GTTATAAGTCTGACAAAGTA+TGG | 0.416428 | 8_4:+48868756 | Msa1329920:CDS |
| AGCTTCACGAGGCATTTCAT+AGG | 0.419952 | 8_4:-48868819 | None:intergenic |
| GGCATTTCATAGGCATCTTT+AGG | 0.420736 | 8_4:-48868809 | None:intergenic |
| TATGTGAGAAATCTCTTCCT+TGG | 0.429865 | 8_4:-48867352 | None:intergenic |
| CAAACACAGTTCTTAACAAC+CGG | 0.443114 | 8_4:-48868993 | None:intergenic |
| TTATTGATTCTAATGAATAT+AGG | 0.457291 | 8_4:+48868856 | Msa1329920:exon |
| TTGTGCTCCCTAAGGAGATC+TGG | 0.464745 | 8_4:-48868500 | None:intergenic |
| CGTACGCTGCATAACAAATC+AGG | 0.478326 | 8_4:-48867170 | None:intergenic |
| CAGAACAGAACACTTATTCA+TGG | 0.490170 | 8_4:-48866142 | None:intergenic |
| AATGCCTCGTGAAGCTGTTA+AGG | 0.503909 | 8_4:+48868826 | Msa1329920:CDS |
| TACGAGTTTGATGAATCAAA+AGG | 0.504698 | 8_4:+48868560 | Msa1329920:CDS |
| CCACTGGTGTTAAGAAATCA+AGG | 0.511551 | 8_4:+48868786 | Msa1329920:CDS |
| TCCTTGAAGCATACCTCAGA+AGG | 0.512000 | 8_4:-48868608 | None:intergenic |
| GTCACTATCTTGGATGGTAA+AGG | 0.521485 | 8_4:-48867206 | None:intergenic |
| AAAGTATGGTTCACTACCAC+TGG | 0.534576 | 8_4:+48868770 | Msa1329920:CDS |
| AGTTATGATGATGATATAGT+TGG | 0.537094 | 8_4:+48868945 | Msa1329920:three_prime_UTR |
| ATCATTACCAGATCTCCTTA+GGG | 0.537160 | 8_4:+48868493 | Msa1329920:CDS |
| TGAATCAAAAGGAAAGTTGA+TGG | 0.539969 | 8_4:+48868571 | Msa1329920:CDS |
| CGTCAAAGGAACATTGTCAA+AGG | 0.540806 | 8_4:+48868658 | Msa1329920:CDS |
| AGATATTCAAATCGCGTCAA+AGG | 0.541661 | 8_4:+48868644 | Msa1329920:CDS |
| GTCAAAGGAACATTGTCAAA+GGG | 0.541892 | 8_4:+48868659 | Msa1329920:CDS |
| GCATTTGTCCTCCCCTTCTG+AGG | 0.542896 | 8_4:+48868595 | Msa1329920:CDS |
| AGGGAGCACAACCTTCCTCC+AGG | 0.554985 | 8_4:+48868512 | Msa1329920:CDS |
| CTCAAATACTGTTGAAGACA+AGG | 0.560814 | 8_4:+48867964 | Msa1329920:CDS |
| GAGGAAGGTTGTGCTCCCTA+AGG | 0.561252 | 8_4:-48868508 | None:intergenic |
| GAAGACCAAGGTTCTTGTGT+GGG | 0.583305 | 8_4:+48868706 | Msa1329920:CDS |
| TGCACATGTTACATTGTGAC+CGG | 0.583605 | 8_4:+48868974 | Msa1329920:three_prime_UTR |
| CTTAACCCACACAAGAACCT+TGG | 0.584699 | 8_4:-48868711 | None:intergenic |
| GATAAAGCTATGACTAAACT+GGG | 0.587036 | 8_4:+48867306 | Msa1329920:CDS |
| TAGAGTGTCACTATCTTGGA+TGG | 0.598900 | 8_4:-48867212 | None:intergenic |
| CCTTGATTTCTTAACACCAG+TGG | 0.601105 | 8_4:-48868786 | None:intergenic |
| GCCTCGTGAAGCTGTTAAGG+TGG | 0.601228 | 8_4:+48868829 | Msa1329920:CDS |
| TTGGATCTCCAAGAAAGCCA+AGG | 0.613343 | 8_4:+48867335 | Msa1329920:CDS |
| TGAAGACCAAGGTTCTTGTG+TGG | 0.616802 | 8_4:+48868705 | Msa1329920:CDS |
| CCTTGAAGCATACCTCAGAA+GGG | 0.625952 | 8_4:-48868607 | None:intergenic |
| GAAGCATACCTCAGAAGGGG+AGG | 0.636659 | 8_4:-48868603 | None:intergenic |
| TCGTAGCATGTTATATTACG+GGG | 0.641980 | 8_4:-48868542 | None:intergenic |
| CTTGAAGCATACCTCAGAAG+GGG | 0.649660 | 8_4:-48868606 | None:intergenic |
| AAATGTATAATCAATCATCA+GGG | 0.655109 | 8_4:-48869091 | None:intergenic |
| TCCACCTTAACAGCTTCACG+AGG | 0.680099 | 8_4:-48868830 | None:intergenic |
| GAGACTCACAGATAAGTCGT+CGG | 0.681263 | 8_4:-48867376 | None:intergenic |
| CGTAGCATGTTATATTACGG+GGG | 0.700332 | 8_4:-48868541 | None:intergenic |
| TATAGATGGAATGAAGACCA+AGG | 0.710812 | 8_4:+48868694 | Msa1329920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAAAAAAAATTTTATAG+GGG | - | chr8_4:48866296-48866315 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAATTTATAG+GGG | - | chr8_4:48866323-48866342 | None:intergenic | 10.0% |
| !! | CAAAACAAAAAAAATTTATA+GGG | - | chr8_4:48866324-48866343 | None:intergenic | 10.0% |
| !! | TCAAAACAAAAAAAATTTAT+AGG | - | chr8_4:48866325-48866344 | None:intergenic | 10.0% |
| !! | CTTGAAAAATAAAATAAAAT+TGG | + | chr8_4:48866381-48866400 | Msa1329920:intron | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | + | chr8_4:48866582-48866601 | Msa1329920:intron | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr8_4:48866991-48867010 | None:intergenic | 10.0% |
| !! | AAATTCAAGATTTAAATATA+TGG | - | chr8_4:48867447-48867466 | None:intergenic | 10.0% |
| !!! | TTTTGTAGTTTTTTTTTATT+CGG | - | chr8_4:48868088-48868107 | None:intergenic | 10.0% |
| !! | TTAACCAAAATTAAACAAAA+GGG | - | chr8_4:48866231-48866250 | None:intergenic | 15.0% |
| !! | ATTAACCAAAATTAAACAAA+AGG | - | chr8_4:48866232-48866251 | None:intergenic | 15.0% |
| !!! | TTTGTTTAATTTTGGTTAAT+AGG | + | chr8_4:48866232-48866251 | Msa1329920:intron | 15.0% |
| !!! | TCAAAAAAAAATTTTATAGG+GGG | - | chr8_4:48866295-48866314 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAATTTATAGG+GGG | - | chr8_4:48866322-48866341 | None:intergenic | 15.0% |
| !!! | AAATAAAATTGGTTTTTGTT+TGG | + | chr8_4:48866392-48866411 | Msa1329920:intron | 15.0% |
| !! | ATCAAAACAAAAAAATTTAC+AGG | + | chr8_4:48866430-48866449 | Msa1329920:intron | 15.0% |
| !! | TCAAAACAAAAAAATTTACA+GGG | + | chr8_4:48866431-48866450 | Msa1329920:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | - | chr8_4:48866580-48866599 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | - | chr8_4:48866581-48866600 | None:intergenic | 15.0% |
| !!! | CAAATTTTTTTTATGGTTTT+TGG | + | chr8_4:48866643-48866662 | Msa1329920:intron | 15.0% |
| !!! | CAAAAATAAAAATTTTTGCA+GGG | - | chr8_4:48866670-48866689 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTTGC+AGG | + | chr8_4:48866931-48866950 | Msa1329920:intron | 15.0% |
| !! | ACTATAAAAAAAAATTTGCA+GGG | + | chr8_4:48866932-48866951 | Msa1329920:intron | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr8_4:48866992-48867011 | Msa1329920:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr8_4:48866993-48867012 | Msa1329920:intron | 15.0% |
| !!! | CAAATTTTTTTTGTAGTTTT+TGG | - | chr8_4:48867052-48867071 | None:intergenic | 15.0% |
| !! | GAAAGAAATGAATATAAAAA+TGG | - | chr8_4:48867260-48867279 | None:intergenic | 15.0% |
| !!! | TTTTTTAGTTATGTCAATTT+TGG | + | chr8_4:48867475-48867494 | Msa1329920:intron | 15.0% |
| !! | AATGATATAATGAGAATTAA+GGG | + | chr8_4:48867718-48867737 | Msa1329920:intron | 15.0% |
| !!! | TTTGTAGTTTTTTTTTATTC+GGG | - | chr8_4:48868087-48868106 | None:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr8_4:48868262-48868281 | Msa1329920:intron | 15.0% |
| !!! | TTATTGATTCTAATGAATAT+AGG | + | chr8_4:48868856-48868875 | Msa1329920:exon | 15.0% |
| !!! | TTTTCCCTTTTGTTTAATTT+TGG | + | chr8_4:48866224-48866243 | Msa1329920:intron | 20.0% |
| !!! | AAGAAATTTTCGTTTTTGTT+TGG | - | chr8_4:48866364-48866383 | None:intergenic | 20.0% |
| !! | CAAAACAAAAAAATTTACAG+GGG | + | chr8_4:48866432-48866451 | Msa1329920:intron | 20.0% |
| !! | ATGAAAATTAAAGGGTTAAT+AGG | - | chr8_4:48866485-48866504 | None:intergenic | 20.0% |
| !!! | ATTAACCCTTTAATTTTCAT+TGG | + | chr8_4:48866485-48866504 | Msa1329920:intron | 20.0% |
| !! | AAACTCCAATGAAAATTAAA+GGG | - | chr8_4:48866493-48866512 | None:intergenic | 20.0% |
| !! | TAAACTCCAATGAAAATTAA+AGG | - | chr8_4:48866494-48866513 | None:intergenic | 20.0% |
| !! | AACCATAAAAAAAATTTGCA+GGG | - | chr8_4:48866641-48866660 | None:intergenic | 20.0% |
| !! | AAACCATAAAAAAAATTTGC+AGG | - | chr8_4:48866642-48866661 | None:intergenic | 20.0% |
| !!! | CCAAAAATAAAAATTTTTGC+AGG | - | chr8_4:48866671-48866690 | None:intergenic | 20.0% |
| !!! | CCTGCAAAAATTTTTATTTT+TGG | + | chr8_4:48866668-48866687 | Msa1329920:intron | 20.0% |
| !!! | TCAAAAACAAAATTTTTTGC+AGG | + | chr8_4:48866901-48866920 | Msa1329920:intron | 20.0% |
| !!! | CAAAAACAAAATTTTTTGCA+GGG | + | chr8_4:48866902-48866921 | Msa1329920:intron | 20.0% |
| !! | AAACTACAAAAAAAATTTGC+AGG | + | chr8_4:48867053-48867072 | Msa1329920:intron | 20.0% |
| !!! | AAAAATGGTTAAGATTTTCA+AGG | - | chr8_4:48867129-48867148 | None:intergenic | 20.0% |
| !!! | TTATGTCAATTTTGGATAAT+TGG | + | chr8_4:48867483-48867502 | Msa1329920:intron | 20.0% |
| !! | CAATGATATAATGAGAATTA+AGG | + | chr8_4:48867717-48867736 | Msa1329920:intron | 20.0% |
| !! | ATGATATAATGAGAATTAAG+GGG | + | chr8_4:48867719-48867738 | Msa1329920:intron | 20.0% |
| !!! | TTGTAGTTTTTTTTTATTCG+GGG | - | chr8_4:48868086-48868105 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr8_4:48868261-48868280 | Msa1329920:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr8_4:48868263-48868282 | Msa1329920:intron | 20.0% |
| !! | CTGCAAATATGTTAAAAAAA+TGG | - | chr8_4:48868338-48868357 | None:intergenic | 20.0% |
| !! | TATTCATGGTGATGAAAAAA+TGG | - | chr8_4:48866131-48866150 | None:intergenic | 25.0% |
| !! | TAAAATTTCTCACGTTGATT+TGG | - | chr8_4:48866186-48866205 | None:intergenic | 25.0% |
| !! | GTCTTTACCTTGTAAATTTT+CGG | - | chr8_4:48866463-48866482 | None:intergenic | 25.0% |
| ! | TGGAGTTTATATTTGAAAGT+CGG | + | chr8_4:48866505-48866524 | Msa1329920:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | + | chr8_4:48866864-48866883 | Msa1329920:intron | 25.0% |
| !!! | TTTTTGGTCATTGCAAAAAT+AGG | - | chr8_4:48866975-48866994 | None:intergenic | 25.0% |
| !!! | AGATTTTCAAGGCTAAAATA+TGG | - | chr8_4:48867118-48867137 | None:intergenic | 25.0% |
| !! | TTGTGTCTCAACAAAATTTT+GGG | - | chr8_4:48867759-48867778 | None:intergenic | 25.0% |
| !! | TTTGTGTCTCAACAAAATTT+TGG | - | chr8_4:48867760-48867779 | None:intergenic | 25.0% |
| ! | GTTTATATACTTCAAGGTAT+AGG | - | chr8_4:48867790-48867809 | None:intergenic | 25.0% |
| ! | GGTTTATTGTTCATAATAGT+CGG | - | chr8_4:48867812-48867831 | None:intergenic | 25.0% |
| ! | TAAAAAAATAGCAAGTACCT+TGG | - | chr8_4:48868012-48868031 | None:intergenic | 25.0% |
| !! | TCGCAACTTTGAAAAAATTA+GGG | - | chr8_4:48868056-48868075 | None:intergenic | 25.0% |
| !! | ATCGCAACTTTGAAAAAATT+AGG | - | chr8_4:48868057-48868076 | None:intergenic | 25.0% |
| !!! | TTTTTTCAAAGTTGCGATTT+TGG | + | chr8_4:48868059-48868078 | Msa1329920:intron | 25.0% |
| !!! | TGTAGTTTTTTTTTATTCGG+GGG | - | chr8_4:48868085-48868104 | None:intergenic | 25.0% |
| ! | GTAATTTATGTATGCATCTA+TGG | - | chr8_4:48868380-48868399 | None:intergenic | 25.0% |
| ! | TAGATGCATACATAAATTAC+TGG | + | chr8_4:48868380-48868399 | Msa1329920:intron | 25.0% |
| ! | GACTTATTAAATTCTGTTTC+AGG | + | chr8_4:48868458-48868477 | Msa1329920:intron | 25.0% |
| !! | AGTTATGATGATGATATAGT+TGG | + | chr8_4:48868945-48868964 | Msa1329920:three_prime_UTR | 25.0% |
| !!! | TTTGGATTTTGAGGCTAAAA+TGG | - | chr8_4:48866168-48866187 | None:intergenic | 30.0% |
| AAAATGACCTATATTACACG+AGG | - | chr8_4:48866264-48866283 | None:intergenic | 30.0% | |
| !! | CGTGTAATATAGGTCATTTT+CGG | + | chr8_4:48866264-48866283 | Msa1329920:intron | 30.0% |
| GGAAAAACCGAAAATTTACA+AGG | + | chr8_4:48866453-48866472 | Msa1329920:intron | 30.0% | |
| TTTGAAAGTCGGCTAAAATA+TGG | + | chr8_4:48866516-48866535 | Msa1329920:intron | 30.0% | |
| !!! | AAAACTGGTCTATTTTTGCA+GGG | - | chr8_4:48866609-48866628 | None:intergenic | 30.0% |
| !!! | AAAAACTGGTCTATTTTTGC+AGG | - | chr8_4:48866610-48866629 | None:intergenic | 30.0% |
| !!! | GTCCCTGCAAATTTTTTTTA+TGG | + | chr8_4:48866575-48866594 | Msa1329920:intron | 30.0% |
| GTGACAAATCATCACATAAT+TGG | + | chr8_4:48866863-48866882 | Msa1329920:intron | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | + | chr8_4:48867025-48867044 | Msa1329920:intron | 30.0% |
| TCAAGGCTAAAATATGGTAT+TGG | - | chr8_4:48867112-48867131 | None:intergenic | 30.0% | |
| AGAAAAACTGAGAAGGAAAA+TGG | + | chr8_4:48867284-48867303 | Msa1329920:exon | 30.0% | |
| GATAAAGCTATGACTAAACT+GGG | + | chr8_4:48867306-48867325 | Msa1329920:CDS | 30.0% | |
| !!! | TATCTGTGAGTCTCTTTTTT+CGG | + | chr8_4:48867385-48867404 | Msa1329920:intron | 30.0% |
| !! | GCTGATTGATTTTCTTGTAA+TGG | + | chr8_4:48867694-48867713 | Msa1329920:intron | 30.0% |
| ! | TGTGTCTCAACAAAATTTTG+GGG | - | chr8_4:48867758-48867777 | None:intergenic | 30.0% |
| ! | TAGTCGGTTTATATACTTCA+AGG | - | chr8_4:48867796-48867815 | None:intergenic | 30.0% |
| GTTATTAACACCAAGAGTAA+AGG | - | chr8_4:48867852-48867871 | None:intergenic | 30.0% | |
| ! | GCAACTTTGAAAAAATTAGG+GGG | - | chr8_4:48868054-48868073 | None:intergenic | 30.0% |
| ! | CGCAACTTTGAAAAAATTAG+GGG | - | chr8_4:48868055-48868074 | None:intergenic | 30.0% |
| ! | TTTCACGAAGTTGTGATTTT+GGG | - | chr8_4:48868289-48868308 | None:intergenic | 30.0% |
| ACTCGTAGCATGTTATATTA+CGG | - | chr8_4:48868547-48868566 | None:intergenic | 30.0% | |
| TACGAGTTTGATGAATCAAA+AGG | + | chr8_4:48868560-48868579 | Msa1329920:CDS | 30.0% | |
| TGAATCAAAAGGAAAGTTGA+TGG | + | chr8_4:48868571-48868590 | Msa1329920:CDS | 30.0% | |
| GGAAAACTCATTGTTATAGA+TGG | + | chr8_4:48868680-48868699 | Msa1329920:CDS | 30.0% | |
| GTTATAAGTCTGACAAAGTA+TGG | + | chr8_4:48868756-48868775 | Msa1329920:CDS | 30.0% | |
| ATTTGTATGTGTGACTTTAG+AGG | + | chr8_4:48868917-48868936 | Msa1329920:three_prime_UTR | 30.0% | |
| TCAGTGTTTATTAGTGTGTT+AGG | + | chr8_4:48869032-48869051 | Msa1329920:three_prime_UTR | 30.0% | |
| CAGAACAGAACACTTATTCA+TGG | - | chr8_4:48866145-48866164 | None:intergenic | 35.0% | |
| !!! | TCACGTTGATTTGGATTTTG+AGG | - | chr8_4:48866177-48866196 | None:intergenic | 35.0% |
| GTCTTTACCTCGTGTAATAT+AGG | + | chr8_4:48866254-48866273 | Msa1329920:intron | 35.0% | |
| !!! | GTTTTGATTTACCCCCTAAT+AGG | + | chr8_4:48866338-48866357 | Msa1329920:intron | 35.0% |
| !! | TTTTTGTTTGGCCTATTAGG+GGG | - | chr8_4:48866352-48866371 | None:intergenic | 35.0% |
| !! | GTTTTTGTTTGGCCTATTAG+GGG | - | chr8_4:48866353-48866372 | None:intergenic | 35.0% |
| !! | CGTTTTTGTTTGGCCTATTA+GGG | - | chr8_4:48866354-48866373 | None:intergenic | 35.0% |
| !! | TCGTTTTTGTTTGGCCTATT+AGG | - | chr8_4:48866355-48866374 | None:intergenic | 35.0% |
| AGTCGGCTAAAATATGGTAT+TGG | + | chr8_4:48866522-48866541 | Msa1329920:intron | 35.0% | |
| ! | CAAAACTGACCTATTTTGCA+GGG | - | chr8_4:48866549-48866568 | None:intergenic | 35.0% |
| TGACAAATCATCGCATAACT+GGG | - | chr8_4:48866708-48866727 | None:intergenic | 35.0% | |
| !!! | TTGTCACTTTTGTGCATATG+TGG | - | chr8_4:48866850-48866869 | None:intergenic | 35.0% |
| ! | TTGCAAAAATAGGCCAGTTT+TGG | - | chr8_4:48866965-48866984 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | - | chr8_4:48867026-48867045 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | + | chr8_4:48867024-48867043 | Msa1329920:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr8_4:48866598-48866617 | None:intergenic | 35.0% |
| TTCTGCAAGAAAAACTGAGA+AGG | + | chr8_4:48867277-48867296 | Msa1329920:five_prime_UTR | 35.0% | |
| GGATAAAGCTATGACTAAAC+TGG | + | chr8_4:48867305-48867324 | Msa1329920:CDS | 35.0% | |
| TATGTGAGAAATCTCTTCCT+TGG | - | chr8_4:48867355-48867374 | None:intergenic | 35.0% | |
| ATCGTATCAGTCTTCAACAT+GGG | - | chr8_4:48867657-48867676 | None:intergenic | 35.0% | |
| TATCGTATCAGTCTTCAACA+TGG | - | chr8_4:48867658-48867677 | None:intergenic | 35.0% | |
| ! | AAGGCTCATACTGATCATTT+TGG | - | chr8_4:48867833-48867852 | None:intergenic | 35.0% |
| CTCAAATACTGTTGAAGACA+AGG | + | chr8_4:48867964-48867983 | Msa1329920:CDS | 35.0% | |
| TGCCACATATGCAAAACTTA+GGG | - | chr8_4:48868116-48868135 | None:intergenic | 35.0% | |
| ! | TTTTGCATATGTGGCAGTTT+TGG | + | chr8_4:48868120-48868139 | Msa1329920:intron | 35.0% |
| AAGGCCAAAAAAATAACACG+TGG | - | chr8_4:48868201-48868220 | None:intergenic | 35.0% | |
| !!! | ACGTGTTATTTTTTTGGCCT+TGG | + | chr8_4:48868200-48868219 | Msa1329920:intron | 35.0% |
| !!! | CGTGTTATTTTTTTGGCCTT+GGG | + | chr8_4:48868201-48868220 | Msa1329920:intron | 35.0% |
| !!! | GTGTTATTTTTTTGGCCTTG+GGG | + | chr8_4:48868202-48868221 | Msa1329920:intron | 35.0% |
| !!! | TGTTATTTTTTTGGCCTTGG+GGG | + | chr8_4:48868203-48868222 | Msa1329920:intron | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | chr8_4:48868230-48868249 | None:intergenic | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | + | chr8_4:48868234-48868253 | Msa1329920:intron | 35.0% | |
| ! | CTTTCACGAAGTTGTGATTT+TGG | - | chr8_4:48868290-48868309 | None:intergenic | 35.0% |
| AATCACAACTTCGTGAAAGT+TGG | + | chr8_4:48868291-48868310 | Msa1329920:intron | 35.0% | |
| ATCACAACTTCGTGAAAGTT+GGG | + | chr8_4:48868292-48868311 | Msa1329920:intron | 35.0% | |
| AATCATTACCAGATCTCCTT+AGG | + | chr8_4:48868492-48868511 | Msa1329920:CDS | 35.0% | |
| ATCATTACCAGATCTCCTTA+GGG | + | chr8_4:48868493-48868512 | Msa1329920:CDS | 35.0% | |
| TCGTAGCATGTTATATTACG+GGG | - | chr8_4:48868545-48868564 | None:intergenic | 35.0% | |
| CTCGTAGCATGTTATATTAC+GGG | - | chr8_4:48868546-48868565 | None:intergenic | 35.0% | |
| AGATATTCAAATCGCGTCAA+AGG | + | chr8_4:48868644-48868663 | Msa1329920:CDS | 35.0% | |
| GTCAAAGGAACATTGTCAAA+GGG | + | chr8_4:48868659-48868678 | Msa1329920:CDS | 35.0% | |
| TATAGATGGAATGAAGACCA+AGG | + | chr8_4:48868694-48868713 | Msa1329920:CDS | 35.0% | |
| CAAACACAGTTCTTAACAAC+CGG | - | chr8_4:48868996-48869015 | None:intergenic | 35.0% | |
| AATCATCAGGGAAGAAGATT+TGG | - | chr8_4:48869082-48869101 | None:intergenic | 35.0% | |
| !! | TGGTTTTTGTTTGGCCTACT+AGG | + | chr8_4:48866401-48866420 | Msa1329920:intron | 40.0% |
| !! | GGTTTTTGTTTGGCCTACTA+GGG | + | chr8_4:48866402-48866421 | Msa1329920:intron | 40.0% |
| !! | GTTTTTGTTTGGCCTACTAG+GGG | + | chr8_4:48866403-48866422 | Msa1329920:intron | 40.0% |
| !! | TTTTTGTTTGGCCTACTAGG+GGG | + | chr8_4:48866404-48866423 | Msa1329920:intron | 40.0% |
| !!! | GTTTTGATTTACCCCCTAGT+AGG | - | chr8_4:48866418-48866437 | None:intergenic | 40.0% |
| ! | CCAAAACTGACCTATTTTGC+AGG | - | chr8_4:48866550-48866569 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGTCAGTTT+TGG | + | chr8_4:48866547-48866566 | Msa1329920:intron | 40.0% |
| GCAGGGACTAAAACAAAAAC+TGG | - | chr8_4:48866624-48866643 | None:intergenic | 40.0% | |
| GACAAATCATCGCATAACTG+GGG | - | chr8_4:48866707-48866726 | None:intergenic | 40.0% | |
| GTGACAAATCATCGCATAAC+TGG | - | chr8_4:48866709-48866728 | None:intergenic | 40.0% | |
| TTGTGCATATGTGGCATATG+TGG | - | chr8_4:48866841-48866860 | None:intergenic | 40.0% | |
| ATCATCACATAATTGGGCTC+AGG | + | chr8_4:48866870-48866889 | Msa1329920:intron | 40.0% | |
| TCATCACATAATTGGGCTCA+GGG | + | chr8_4:48866871-48866890 | Msa1329920:intron | 40.0% | |
| GCAGGTACTAAAACCAAAAC+TGG | + | chr8_4:48867071-48867090 | Msa1329920:intron | 40.0% | |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | chr8_4:48867085-48867104 | Msa1329920:intron | 40.0% |
| GCTGCATGGTGAAAGAAAAA+TGG | - | chr8_4:48867144-48867163 | None:intergenic | 40.0% | |
| GTCACTATCTTGGATGGTAA+AGG | - | chr8_4:48867209-48867228 | None:intergenic | 40.0% | |
| ! | TAGAGTGTCACTATCTTGGA+TGG | - | chr8_4:48867215-48867234 | None:intergenic | 40.0% |
| ! | GACTTAGAGTGTCACTATCT+TGG | - | chr8_4:48867219-48867238 | None:intergenic | 40.0% |
| ! | TGACTAAACTGGGAAGCTTT+TGG | + | chr8_4:48867316-48867335 | Msa1329920:CDS | 40.0% |
| ! | AATCTCTTCCTTGGCTTTCT+TGG | - | chr8_4:48867346-48867365 | None:intergenic | 40.0% |
| TGTGAAGCAGAACATGAACT+AGG | + | chr8_4:48867624-48867643 | Msa1329920:intron | 40.0% | |
| TCAGTATGAGCCTTTACTCT+TGG | + | chr8_4:48867839-48867858 | Msa1329920:intron | 40.0% | |
| ! | CTTTTCATCAACAAGCTCCA+AGG | + | chr8_4:48867992-48868011 | Msa1329920:CDS | 40.0% |
| CCACATATGCAAAACTTAGG+GGG | - | chr8_4:48868114-48868133 | None:intergenic | 40.0% | |
| GCCACATATGCAAAACTTAG+GGG | - | chr8_4:48868115-48868134 | None:intergenic | 40.0% | |
| CTGCCACATATGCAAAACTT+AGG | - | chr8_4:48868117-48868136 | None:intergenic | 40.0% | |
| !!! | GGTGCCACGTGTTATTTTTT+TGG | + | chr8_4:48868194-48868213 | Msa1329920:intron | 40.0% |
| !!! | GTTATTTTTTTGGCCTTGGG+GGG | + | chr8_4:48868204-48868223 | Msa1329920:intron | 40.0% |
| CTGCTACAGTTGCAAAACTT+AGG | + | chr8_4:48868233-48868252 | Msa1329920:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | + | chr8_4:48868235-48868254 | Msa1329920:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | + | chr8_4:48868236-48868255 | Msa1329920:intron | 40.0% | |
| TCACAACTTCGTGAAAGTTG+GGG | + | chr8_4:48868293-48868312 | Msa1329920:intron | 40.0% | |
| CGTAGCATGTTATATTACGG+GGG | - | chr8_4:48868544-48868563 | None:intergenic | 40.0% | |
| CGTCAAAGGAACATTGTCAA+AGG | + | chr8_4:48868658-48868677 | Msa1329920:CDS | 40.0% | |
| AAAGTATGGTTCACTACCAC+TGG | + | chr8_4:48868770-48868789 | Msa1329920:CDS | 40.0% | |
| CCTTGATTTCTTAACACCAG+TGG | - | chr8_4:48868789-48868808 | None:intergenic | 40.0% | |
| ! | CCACTGGTGTTAAGAAATCA+AGG | + | chr8_4:48868786-48868805 | Msa1329920:CDS | 40.0% |
| GGCATTTCATAGGCATCTTT+AGG | - | chr8_4:48868812-48868831 | None:intergenic | 40.0% | |
| TGCACATGTTACATTGTGAC+CGG | + | chr8_4:48868974-48868993 | Msa1329920:three_prime_UTR | 40.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr8_4:48866537-48866556 | Msa1329920:intron | 45.0% |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr8_4:48866949-48866968 | Msa1329920:intron | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | chr8_4:48867087-48867106 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | chr8_4:48867084-48867103 | Msa1329920:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr8_4:48866537-48866556 | None:intergenic | 45.0% |
| CGTACGCTGCATAACAAATC+AGG | - | chr8_4:48867173-48867192 | None:intergenic | 45.0% | |
| TTGGATCTCCAAGAAAGCCA+AGG | + | chr8_4:48867335-48867354 | Msa1329920:CDS | 45.0% | |
| GAGACTCACAGATAAGTCGT+CGG | - | chr8_4:48867379-48867398 | None:intergenic | 45.0% | |
| CAGAACATGAACTAGGCAAC+TGG | + | chr8_4:48867631-48867650 | Msa1329920:intron | 45.0% | |
| CATATGCAAAACTTAGGGGG+CGG | - | chr8_4:48868111-48868130 | None:intergenic | 45.0% | |
| ! | CCCCCTAAGTTTTGCATATG+TGG | + | chr8_4:48868111-48868130 | Msa1329920:intron | 45.0% |
| !! | ACCGAGTCAAAATTGGCCTT+GGG | - | chr8_4:48868148-48868167 | None:intergenic | 45.0% |
| AGCGTAGACCGAGTCAAAAT+TGG | - | chr8_4:48868155-48868174 | None:intergenic | 45.0% | |
| CACAACTTCGTGAAAGTTGG+GGG | + | chr8_4:48868294-48868313 | Msa1329920:intron | 45.0% | |
| CTTGAAGCATACCTCAGAAG+GGG | - | chr8_4:48868609-48868628 | None:intergenic | 45.0% | |
| CCTTGAAGCATACCTCAGAA+GGG | - | chr8_4:48868610-48868629 | None:intergenic | 45.0% | |
| TCCTTGAAGCATACCTCAGA+AGG | - | chr8_4:48868611-48868630 | None:intergenic | 45.0% | |
| TGAAGACCAAGGTTCTTGTG+TGG | + | chr8_4:48868705-48868724 | Msa1329920:CDS | 45.0% | |
| GAAGACCAAGGTTCTTGTGT+GGG | + | chr8_4:48868706-48868725 | Msa1329920:CDS | 45.0% | |
| CTTAACCCACACAAGAACCT+TGG | - | chr8_4:48868714-48868733 | None:intergenic | 45.0% | |
| ! | CAAGGTTCTTGTGTGGGTTA+AGG | + | chr8_4:48868712-48868731 | Msa1329920:CDS | 45.0% |
| ! | AGCTTCACGAGGCATTTCAT+AGG | - | chr8_4:48868822-48868841 | None:intergenic | 45.0% |
| AATGCCTCGTGAAGCTGTTA+AGG | + | chr8_4:48868826-48868845 | Msa1329920:CDS | 45.0% | |
| !!! | AATCAAAAAAAAATTTTATA+GGG | - | chr8_4:48866297-48866316 | None:intergenic | 5.0% |
| !!! | AAATCAAAAAAAAATTTTAT+AGG | - | chr8_4:48866298-48866317 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTTATAGTTTT+TGG | - | chr8_4:48866929-48866948 | None:intergenic | 5.0% |
| TCATCGCATAACTGGGGTCA+GGG | - | chr8_4:48866701-48866720 | None:intergenic | 50.0% | |
| ATCATCGCATAACTGGGGTC+AGG | - | chr8_4:48866702-48866721 | None:intergenic | 50.0% | |
| AAATCAGGACGTACGCTGCA+TGG | - | chr8_4:48867158-48867177 | None:intergenic | 50.0% | |
| !! | CGAGTCAAAATTGGCCTTGG+GGG | - | chr8_4:48868146-48868165 | None:intergenic | 50.0% |
| !! | CCGAGTCAAAATTGGCCTTG+GGG | - | chr8_4:48868147-48868166 | None:intergenic | 50.0% |
| !!! | CCCCAAGGCCAATTTTGACT+CGG | + | chr8_4:48868144-48868163 | Msa1329920:intron | 50.0% |
| ! | GACCGAGTCAAAATTGGCCT+TGG | - | chr8_4:48868149-48868168 | None:intergenic | 50.0% |
| AACACGTGGCACCTCACTTA+GGG | - | chr8_4:48868187-48868206 | None:intergenic | 50.0% | |
| TAACACGTGGCACCTCACTT+AGG | - | chr8_4:48868188-48868207 | None:intergenic | 50.0% | |
| TTGTGCTCCCTAAGGAGATC+TGG | - | chr8_4:48868503-48868522 | None:intergenic | 50.0% | |
| ATATTACGGGGGAACATGCC+TGG | - | chr8_4:48868533-48868552 | None:intergenic | 50.0% | |
| !! | CCCTTCTGAGGTATGCTTCA+AGG | + | chr8_4:48868607-48868626 | Msa1329920:CDS | 50.0% |
| TCCACCTTAACAGCTTCACG+AGG | - | chr8_4:48868833-48868852 | None:intergenic | 50.0% | |
| GAGGAAGGTTGTGCTCCCTA+AGG | - | chr8_4:48868511-48868530 | None:intergenic | 55.0% | |
| GCATTTGTCCTCCCCTTCTG+AGG | + | chr8_4:48868595-48868614 | Msa1329920:CDS | 55.0% | |
| GAAGCATACCTCAGAAGGGG+AGG | - | chr8_4:48868606-48868625 | None:intergenic | 55.0% | |
| GCCTCGTGAAGCTGTTAAGG+TGG | + | chr8_4:48868829-48868848 | Msa1329920:CDS | 55.0% | |
| !! | TGTGGCAGTTTTGGCCCCCA+AGG | + | chr8_4:48868129-48868148 | Msa1329920:intron | 60.0% |
| !! | TGACTCGGTCTACGCTGACG+TGG | + | chr8_4:48868159-48868178 | Msa1329920:intron | 60.0% |
| CTGACGTGGCACCCTAAGTG+AGG | + | chr8_4:48868173-48868192 | Msa1329920:intron | 60.0% | |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | - | chr8_4:48868220-48868239 | None:intergenic | 60.0% |
| ! | AGGGAGCACAACCTTCCTCC+AGG | + | chr8_4:48868512-48868531 | Msa1329920:CDS | 60.0% |
| TTACGGGGGAACATGCCTGG+AGG | - | chr8_4:48868530-48868549 | None:intergenic | 60.0% | |
| GGGGGAACATGCCTGGAGGA+AGG | - | chr8_4:48868526-48868545 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 48866109 | 48869111 | 48866109 | ID=Msa1329920;Name=Msa1329920 |
| chr8_4 | mRNA | 48866109 | 48869111 | 48866109 | ID=Msa1329920-mRNA-1;Parent=Msa1329920;Name=Msa1329920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=224|1|1|1|0.66|0.5|4|249|174 |
| chr8_4 | exon | 48866109 | 48866192 | 48866109 | ID=Msa1329920-mRNA-1:exon:14047;Parent=Msa1329920-mRNA-1 |
| chr8_4 | exon | 48867163 | 48867389 | 48867163 | ID=Msa1329920-mRNA-1:exon:14048;Parent=Msa1329920-mRNA-1 |
| chr8_4 | exon | 48867959 | 48868013 | 48867959 | ID=Msa1329920-mRNA-1:exon:14049;Parent=Msa1329920-mRNA-1 |
| chr8_4 | exon | 48868480 | 48869111 | 48868480 | ID=Msa1329920-mRNA-1:exon:14050;Parent=Msa1329920-mRNA-1 |
| chr8_4 | five_prime_UTR | 48866109 | 48866192 | 48866109 | ID=Msa1329920-mRNA-1:five_prime_utr;Parent=Msa1329920-mRNA-1 |
| chr8_4 | five_prime_UTR | 48867163 | 48867302 | 48867163 | ID=Msa1329920-mRNA-1:five_prime_utr;Parent=Msa1329920-mRNA-1 |
| chr8_4 | CDS | 48867303 | 48867389 | 48867303 | ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1 |
| chr8_4 | CDS | 48867959 | 48868013 | 48867959 | ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1 |
| chr8_4 | CDS | 48868480 | 48868862 | 48868480 | ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1 |
| chr8_4 | three_prime_UTR | 48868863 | 48869111 | 48868863 | ID=Msa1329920-mRNA-1:three_prime_utr;Parent=Msa1329920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
