AlfalfaGEDB | Msa1329920

M. sativa cultivar zhongmu-4 / Msa1329920

KEGG: -
GO: -
PFAM: PF04398.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329920	XP_013457945.1	97.701	174	4	0	1	174	1	174	3.14e-121	349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329920	sp\|Q9M015\|Y5161_ARATH	45.977	174	90	2	1	174	1	170	1.47e-51	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329920	I3S9Q8	97.701	174	4	0	1	174	1	174	1.50e-121	349

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1329920	0.809690	1.670504e-50	-8.615850e-47
Msa0025330	Msa1329920	0.800569	1.355295e-48	-8.615850e-47
Msa0044020	Msa1329920	0.819549	1.095723e-52	-8.615850e-47
Msa0046750	Msa1329920	0.804186	2.437110e-49	-8.615850e-47
Msa0052080	Msa1329920	0.802508	5.426079e-49	-8.615850e-47
Msa0072370	Msa1329920	0.820047	8.431466e-53	-8.615850e-47
Msa0076310	Msa1329920	0.808703	2.719128e-50	-8.615850e-47
Msa0105420	Msa1329920	0.805026	1.628111e-49	-8.615850e-47
Msa0110970	Msa1329920	0.809106	2.228635e-50	-8.615850e-47
Msa0124340	Msa1329920	0.814339	1.620036e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329920	MtrunA17_Chr4g0061181	97.701	174	4	0	1	174	1	174	2.88e-125	349
Msa1329920	MtrunA17_Chr5g0418311	63.536	181	58	2	1	174	1	180	1.09e-80	237
Msa1329920	MtrunA17_Chr4g0005561	45.977	174	90	1	1	174	1	170	3.22e-55	172
Msa1329920	MtrunA17_Chr7g0243261	47.126	174	88	1	1	174	1	170	2.56e-54	169
Msa1329920	MtrunA17_Chr4g0048871	34.831	89	55	2	51	138	28	114	5.80e-12	60.8
Msa1329920	MtrunA17_Chr8g0378501	32.500	120	73	5	49	163	22	138	5.82e-12	60.8
Msa1329920	MtrunA17_Chr4g0048861	33.333	108	67	4	41	146	17	121	2.10e-11	58.9
Msa1329920	MtrunA17_Chr7g0234601	29.060	117	79	3	56	171	38	151	3.44e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329920	AT2G03350.1	65.341	176	55	2	1	171	1	175	1.10e-78	232
Msa1329920	AT5G37070.1	48.851	174	85	2	1	174	1	170	2.18e-56	175
Msa1329920	AT3G08890.1	48.276	174	86	2	1	174	1	170	2.94e-55	172
Msa1329920	AT3G08890.2	48.276	174	86	2	1	174	1	170	2.94e-55	172
Msa1329920	AT5G01610.2	45.977	174	90	2	1	174	1	170	1.49e-52	165
Msa1329920	AT5G01610.1	45.977	174	90	2	1	174	1	170	1.49e-52	165
Msa1329920	AT1G61667.1	30.894	123	70	4	50	165	18	132	5.77e-12	60.8
Msa1329920	AT1G61667.2	30.894	123	70	4	50	165	54	168	1.34e-11	60.8
Msa1329920	AT5G16380.1	25.185	135	98	2	39	172	16	148	1.96e-11	60.5

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Find 59 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTATAATCAATCATC+AGG	0.381146	8_4:-48869092	None:intergenic
AAAGTATGGTTCACTACCAC+TGG	0.534576	8_4:+48868770	Msa1329920:CDS
AAATGTATAATCAATCATCA+GGG	0.655109	8_4:-48869091	None:intergenic
AATCATCAGGGAAGAAGATT+TGG	0.314679	8_4:-48869079	None:intergenic
AATCATTACCAGATCTCCTT+AGG	0.387760	8_4:+48868492	Msa1329920:CDS
AATCTCTTCCTTGGCTTTCT+TGG	0.159151	8_4:-48867343	None:intergenic
AATGCCTCGTGAAGCTGTTA+AGG	0.503909	8_4:+48868826	Msa1329920:CDS
ACTCGTAGCATGTTATATTA+CGG	0.409672	8_4:-48868544	None:intergenic
AGATATTCAAATCGCGTCAA+AGG	0.541661	8_4:+48868644	Msa1329920:CDS
AGCTTCACGAGGCATTTCAT+AGG	0.419952	8_4:-48868819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGACCTATATTACACG+AGG	-	chr8_4:48866264-48866283	None:intergenic	30.0%
GGAAAAACCGAAAATTTACA+AGG	+	chr8_4:48866453-48866472	Msa1329920:intron	30.0%
TTTGAAAGTCGGCTAAAATA+TGG	+	chr8_4:48866516-48866535	Msa1329920:intron	30.0%
GTGACAAATCATCACATAAT+TGG	+	chr8_4:48866863-48866882	Msa1329920:intron	30.0%
TCAAGGCTAAAATATGGTAT+TGG	-	chr8_4:48867112-48867131	None:intergenic	30.0%
AGAAAAACTGAGAAGGAAAA+TGG	+	chr8_4:48867284-48867303	Msa1329920:exon	30.0%
GATAAAGCTATGACTAAACT+GGG	+	chr8_4:48867306-48867325	Msa1329920:CDS	30.0%
GTTATTAACACCAAGAGTAA+AGG	-	chr8_4:48867852-48867871	None:intergenic	30.0%
ACTCGTAGCATGTTATATTA+CGG	-	chr8_4:48868547-48868566	None:intergenic	30.0%
TACGAGTTTGATGAATCAAA+AGG	+	chr8_4:48868560-48868579	Msa1329920:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	48866109	48869111	48866109	ID=Msa1329920;Name=Msa1329920
chr8_4	mRNA	48866109	48869111	48866109	ID=Msa1329920-mRNA-1;Parent=Msa1329920;Name=Msa1329920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=224\|1\|1\|1\|0.66\|0.5\|4\|249\|174
chr8_4	exon	48866109	48866192	48866109	ID=Msa1329920-mRNA-1:exon:14047;Parent=Msa1329920-mRNA-1
chr8_4	exon	48867163	48867389	48867163	ID=Msa1329920-mRNA-1:exon:14048;Parent=Msa1329920-mRNA-1
chr8_4	exon	48867959	48868013	48867959	ID=Msa1329920-mRNA-1:exon:14049;Parent=Msa1329920-mRNA-1
chr8_4	exon	48868480	48869111	48868480	ID=Msa1329920-mRNA-1:exon:14050;Parent=Msa1329920-mRNA-1
chr8_4	five_prime_UTR	48866109	48866192	48866109	ID=Msa1329920-mRNA-1:five_prime_utr;Parent=Msa1329920-mRNA-1
chr8_4	five_prime_UTR	48867163	48867302	48867163	ID=Msa1329920-mRNA-1:five_prime_utr;Parent=Msa1329920-mRNA-1
chr8_4	CDS	48867303	48867389	48867303	ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1
chr8_4	CDS	48867959	48868013	48867959	ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1
chr8_4	CDS	48868480	48868862	48868480	ID=Msa1329920-mRNA-1:cds;Parent=Msa1329920-mRNA-1
chr8_4	three_prime_UTR	48868863	48869111	48868863	ID=Msa1329920-mRNA-1:three_prime_utr;Parent=Msa1329920-mRNA-1

Gene Sequence

>Msa1329920

ATGGATAAAGCTATGACTAAACTGGGAAGCTTTTGGATCTCCAAGAAAGCCAAGGAAGAGATTTCTCACATAACCGACGACTTATCTTCTCTCTCAAATACTGTTGAAGACAAGGCGAAACTTTTCATCAACAAGCTCCAAGGAAAAACTCAGAAATCATTACCAGATCTCCTTAGGGAGCACAACCTTCCTCCAGGCATGTTCCCCCGTAATATAACATGCTACGAGTTTGATGAATCAAAAGGAAAGTTGATGGTGCATTTGTCCTCCCCTTCTGAGGTATGCTTCAAGGACTCGTCTATTGTGAGATATTCAAATCGCGTCAAAGGAACATTGTCAAAGGGAAAACTCATTGTTATAGATGGAATGAAGACCAAGGTTCTTGTGTGGGTTAAGGTTACTAGTGTTTATGTTGAGAGTTATAAGTCTGACAAAGTATGGTTCACTACCACTGGTGTTAAGAAATCAAGGCCTAAAGATGCCTATGAAATGCCTCGTGAAGCTGTTAAGGTGGAAGATTATTGA

Protein sequence

>Msa1329920

MDKAMTKLGSFWISKKAKEEISHITDDLSSLSNTVEDKAKLFINKLQGKTQKSLPDLLREHNLPPGMFPRNITCYEFDESKGKLMVHLSSPSEVCFKDSSIVRYSNRVKGTLSKGKLIVIDGMKTKVLVWVKVTSVYVESYKSDKVWFTTTGVKKSRPKDAYEMPREAVKVEDY*