Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229400 | XP_013443933.2 | 91.489 | 282 | 22 | 2 | 1 | 281 | 1 | 281 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229400 | sp|D7SSD8|MJE1_VITVI | 53.488 | 258 | 115 | 4 | 26 | 281 | 6 | 260 | 8.03e-91 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229400 | A0A396GJ92 | 91.489 | 282 | 22 | 2 | 1 | 281 | 1 | 281 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa1229400 | -0.800928 | 1.145088e-48 | -8.615850e-47 |
| Msa0603310 | Msa1229400 | 0.809202 | 2.126576e-50 | -8.615850e-47 |
| Msa0615070 | Msa1229400 | 0.819704 | 1.009841e-52 | -8.615850e-47 |
| Msa0628200 | Msa1229400 | 0.814077 | 1.851011e-51 | -8.615850e-47 |
| Msa0633070 | Msa1229400 | 0.802098 | 6.589916e-49 | -8.615850e-47 |
| Msa0637590 | Msa1229400 | 0.801509 | 8.707220e-49 | -8.615850e-47 |
| Msa0637700 | Msa1229400 | 0.832146 | 1.116531e-55 | -8.615850e-47 |
| Msa0644340 | Msa1229400 | 0.804412 | 2.187585e-49 | -8.615850e-47 |
| Msa0682160 | Msa1229400 | 0.803211 | 3.884149e-49 | -8.615850e-47 |
| Msa0694320 | Msa1229400 | 0.825058 | 5.765927e-54 | -8.615850e-47 |
| Msa0801920 | Msa1229400 | -0.800067 | 1.714519e-48 | -8.615850e-47 |
| Msa0802600 | Msa1229400 | 0.807509 | 4.883291e-50 | -8.615850e-47 |
| Msa0838120 | Msa1229400 | -0.800561 | 1.360258e-48 | -8.615850e-47 |
| Msa0141410 | Msa1229400 | 0.821299 | 4.347319e-53 | -8.615850e-47 |
| Msa0161230 | Msa1229400 | 0.821851 | 3.241526e-53 | -8.615850e-47 |
| Msa0212950 | Msa1229400 | -0.807987 | 3.864106e-50 | -8.615850e-47 |
| Msa1229400 | Msa1239190 | 0.803443 | 3.477651e-49 | -8.615850e-47 |
| Msa1229400 | Msa1239210 | 0.833858 | 4.189752e-56 | -8.615850e-47 |
| Msa1229400 | Msa1254870 | 0.811978 | 5.341786e-51 | -8.615850e-47 |
| Msa1229400 | Msa1309390 | 0.802306 | 5.972743e-49 | -8.615850e-47 |
| Msa1229400 | Msa1309670 | 0.933076 | 3.251653e-95 | -8.615850e-47 |
| Msa1229400 | Msa1319010 | 0.808777 | 2.621696e-50 | -8.615850e-47 |
| Msa1229400 | Msa1328430 | 0.811114 | 8.232593e-51 | -8.615850e-47 |
| Msa1229400 | Msa1332420 | 0.801566 | 8.474869e-49 | -8.615850e-47 |
| Msa1229400 | Msa1384990 | 0.801185 | 1.014391e-48 | -8.615850e-47 |
| Msa1229400 | Msa1398140 | 0.811066 | 8.430316e-51 | -8.615850e-47 |
| Msa1229400 | Msa1407810 | 0.800390 | 1.474122e-48 | -8.615850e-47 |
| Msa1229400 | Msa1433360 | 0.801857 | 7.387179e-49 | -8.615850e-47 |
| Msa1229400 | Msa1436400 | 0.816270 | 6.030838e-52 | -8.615850e-47 |
| Msa1229400 | Msa1437780 | 0.801798 | 7.594929e-49 | -8.615850e-47 |
| Msa1229400 | Msa1455200 | 0.817564 | 3.088220e-52 | -8.615850e-47 |
| Msa0369990 | Msa1229400 | 0.814066 | 1.861082e-51 | -8.615850e-47 |
| Msa0418160 | Msa1229400 | 0.800475 | 1.416461e-48 | -8.615850e-47 |
| Msa0454770 | Msa1229400 | 0.816874 | 4.415060e-52 | -8.615850e-47 |
| Msa0464310 | Msa1229400 | 0.819233 | 1.293262e-52 | -8.615850e-47 |
| Msa0473000 | Msa1229400 | 0.801618 | 8.272182e-49 | -8.615850e-47 |
| Msa0998780 | Msa1229400 | 0.806122 | 9.586673e-50 | -8.615850e-47 |
| Msa1001120 | Msa1229400 | 0.812368 | 4.391204e-51 | -8.615850e-47 |
| Msa1024480 | Msa1229400 | 0.805821 | 1.109585e-49 | -8.615850e-47 |
| Msa1028890 | Msa1229400 | -0.800252 | 1.572348e-48 | -8.615850e-47 |
| Msa1029860 | Msa1229400 | 0.802455 | 5.564072e-49 | -8.615850e-47 |
| Msa1035050 | Msa1229400 | 0.819966 | 8.797015e-53 | -8.615850e-47 |
| Msa1062060 | Msa1229400 | 0.837756 | 4.306676e-57 | -8.615850e-47 |
| Msa1066770 | Msa1229400 | 0.802222 | 6.215068e-49 | -8.615850e-47 |
| Msa1075090 | Msa1229400 | 0.815385 | 9.497073e-52 | -8.615850e-47 |
| Msa1100330 | Msa1229400 | 0.804808 | 1.807927e-49 | -8.615850e-47 |
| Msa0253230 | Msa1229400 | -0.812323 | 4.491438e-51 | -8.615850e-47 |
| Msa0261020 | Msa1229400 | -0.802497 | 5.456348e-49 | -8.615850e-47 |
| Msa0269710 | Msa1229400 | 0.812106 | 5.009542e-51 | -8.615850e-47 |
| Msa0271700 | Msa1229400 | 0.801018 | 1.097283e-48 | -8.615850e-47 |
| Msa0345050 | Msa1229400 | 0.801279 | 9.705180e-49 | -8.615850e-47 |
| Msa0346170 | Msa1229400 | 0.848610 | 5.490961e-60 | -8.615850e-47 |
| Msa0356270 | Msa1229400 | 0.800045 | 1.732870e-48 | -8.615850e-47 |
| Msa1107220 | Msa1229400 | 0.827959 | 1.172603e-54 | -8.615850e-47 |
| Msa1123730 | Msa1229400 | 0.801135 | 1.038544e-48 | -8.615850e-47 |
| Msa1136760 | Msa1229400 | 0.810550 | 1.090396e-50 | -8.615850e-47 |
| Msa1150760 | Msa1229400 | 0.812810 | 3.514589e-51 | -8.615850e-47 |
| Msa1167960 | Msa1229400 | 0.808128 | 3.605862e-50 | -8.615850e-47 |
| Msa1169870 | Msa1229400 | 0.804305 | 2.302060e-49 | -8.615850e-47 |
| Msa1185270 | Msa1229400 | 0.823111 | 1.651253e-53 | -8.615850e-47 |
| Msa1191270 | Msa1229400 | 0.812123 | 4.966086e-51 | -8.615850e-47 |
| Msa1202110 | Msa1229400 | 0.810376 | 1.188593e-50 | -8.615850e-47 |
| Msa1215740 | Msa1229400 | 0.802039 | 6.779334e-49 | -8.615850e-47 |
| Msa0488660 | Msa1229400 | 0.802289 | 6.020004e-49 | -8.615850e-47 |
| Msa0497680 | Msa1229400 | 0.809211 | 2.116953e-50 | -8.615850e-47 |
| Msa0531050 | Msa1229400 | 0.816693 | 4.848357e-52 | -8.615850e-47 |
| Msa0556270 | Msa1229400 | 0.822000 | 2.993228e-53 | -8.615850e-47 |
| Msa0560950 | Msa1229400 | 0.812816 | 3.504639e-51 | -8.615850e-47 |
| Msa0567330 | Msa1229400 | 0.804338 | 2.266869e-49 | -8.615850e-47 |
| Msa0580890 | Msa1229400 | -0.800803 | 1.213968e-48 | -8.615850e-47 |
| Msa0583270 | Msa1229400 | -0.805882 | 1.077187e-49 | -8.615850e-47 |
| Msa0893220 | Msa1229400 | 0.808710 | 2.709594e-50 | -8.615850e-47 |
| Msa0896920 | Msa1229400 | 0.802749 | 4.840701e-49 | -8.615850e-47 |
| Msa0941420 | Msa1229400 | -0.800699 | 1.275137e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229400 | MtrunA17_Chr8g0336411 | 91.489 | 282 | 22 | 2 | 1 | 281 | 1 | 281 | 0.0 | 526 |
| Msa1229400 | MtrunA17_Chr8g0336401 | 87.676 | 284 | 32 | 1 | 1 | 281 | 1 | 284 | 0.0 | 513 |
| Msa1229400 | MtrunA17_Chr8g0336441 | 79.715 | 281 | 54 | 2 | 1 | 281 | 1 | 278 | 3.77e-163 | 454 |
| Msa1229400 | MtrunA17_Chr3g0104871 | 77.656 | 273 | 58 | 2 | 9 | 281 | 1 | 270 | 1.68e-151 | 424 |
| Msa1229400 | MtrunA17_Chr8g0336391 | 65.957 | 282 | 94 | 2 | 1 | 281 | 1 | 281 | 1.40e-128 | 366 |
| Msa1229400 | MtrunA17_Chr8g0336381 | 56.489 | 262 | 103 | 4 | 26 | 281 | 6 | 262 | 1.04e-103 | 303 |
| Msa1229400 | MtrunA17_Chr5g0402871 | 52.308 | 260 | 120 | 4 | 24 | 281 | 2 | 259 | 1.65e-92 | 274 |
| Msa1229400 | MtrunA17_Chr5g0402851 | 50.775 | 258 | 123 | 4 | 26 | 281 | 7 | 262 | 2.66e-90 | 268 |
| Msa1229400 | MtrunA17_Chr5g0402841 | 50.000 | 260 | 121 | 6 | 26 | 281 | 7 | 261 | 2.10e-87 | 261 |
| Msa1229400 | MtrunA17_Chr8g0374141 | 41.538 | 260 | 139 | 6 | 26 | 281 | 52 | 302 | 3.00e-61 | 196 |
| Msa1229400 | MtrunA17_Chr5g0402901 | 41.473 | 258 | 142 | 6 | 26 | 281 | 11 | 261 | 7.68e-58 | 186 |
| Msa1229400 | MtrunA17_Chr5g0402881 | 39.147 | 258 | 146 | 5 | 27 | 281 | 29 | 278 | 1.86e-54 | 177 |
| Msa1229400 | MtrunA17_Chr5g0428471 | 37.405 | 262 | 148 | 6 | 26 | 281 | 29 | 280 | 3.94e-49 | 164 |
| Msa1229400 | MtrunA17_Chr7g0219561 | 37.795 | 254 | 150 | 4 | 27 | 278 | 124 | 371 | 6.98e-48 | 163 |
| Msa1229400 | MtrunA17_Chr3g0128581 | 36.047 | 258 | 150 | 5 | 26 | 278 | 35 | 282 | 3.22e-45 | 154 |
| Msa1229400 | MtrunA17_Chr3g0077351 | 32.685 | 257 | 164 | 4 | 26 | 279 | 93 | 343 | 2.41e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229400 | AT3G50440.1 | 42.023 | 257 | 142 | 4 | 28 | 281 | 22 | 274 | 1.24e-65 | 206 |
| Msa1229400 | AT2G23600.1 | 43.243 | 259 | 140 | 4 | 26 | 281 | 8 | 262 | 2.22e-65 | 205 |
| Msa1229400 | AT2G23600.2 | 43.243 | 259 | 140 | 4 | 26 | 281 | 23 | 277 | 4.24e-65 | 205 |
| Msa1229400 | AT2G23620.1 | 42.966 | 263 | 135 | 5 | 26 | 281 | 8 | 262 | 1.77e-64 | 203 |
| Msa1229400 | AT2G23610.1 | 42.857 | 259 | 141 | 4 | 26 | 281 | 8 | 262 | 6.73e-64 | 201 |
| Msa1229400 | AT2G23580.1 | 43.071 | 267 | 134 | 9 | 24 | 281 | 5 | 262 | 1.18e-60 | 193 |
| Msa1229400 | AT2G23590.1 | 40.727 | 275 | 144 | 9 | 15 | 281 | 8 | 271 | 5.40e-60 | 192 |
| Msa1229400 | AT4G37150.1 | 40.809 | 272 | 127 | 8 | 26 | 281 | 2 | 255 | 1.44e-56 | 182 |
| Msa1229400 | AT2G23560.1 | 39.382 | 259 | 152 | 4 | 24 | 281 | 5 | 259 | 1.65e-54 | 177 |
| Msa1229400 | AT2G23550.1 | 40.075 | 267 | 142 | 8 | 24 | 281 | 5 | 262 | 2.17e-54 | 177 |
| Msa1229400 | AT2G23550.4 | 40.075 | 267 | 142 | 8 | 24 | 281 | 12 | 269 | 2.65e-54 | 177 |
| Msa1229400 | AT2G23610.2 | 38.281 | 256 | 112 | 4 | 26 | 281 | 8 | 217 | 5.32e-51 | 167 |
| Msa1229400 | AT1G33990.1 | 36.187 | 257 | 155 | 4 | 26 | 279 | 96 | 346 | 4.73e-50 | 169 |
| Msa1229400 | AT1G26360.1 | 38.168 | 262 | 150 | 6 | 22 | 279 | 184 | 437 | 2.08e-49 | 169 |
| Msa1229400 | AT1G69240.1 | 35.878 | 262 | 158 | 5 | 22 | 279 | 182 | 437 | 2.40e-48 | 166 |
| Msa1229400 | AT5G10300.1 | 38.281 | 256 | 153 | 4 | 27 | 281 | 6 | 257 | 2.52e-48 | 161 |
| Msa1229400 | AT4G09900.1 | 35.798 | 257 | 156 | 5 | 26 | 279 | 97 | 347 | 4.31e-48 | 163 |
| Msa1229400 | AT5G58310.1 | 34.328 | 268 | 146 | 7 | 27 | 278 | 5 | 258 | 1.42e-46 | 157 |
| Msa1229400 | AT3G29770.1 | 39.768 | 259 | 140 | 7 | 27 | 279 | 138 | 386 | 2.42e-46 | 160 |
| Msa1229400 | AT4G16690.1 | 35.317 | 252 | 153 | 5 | 27 | 276 | 12 | 255 | 3.93e-45 | 153 |
| Msa1229400 | AT3G10870.1 | 34.646 | 254 | 161 | 4 | 27 | 278 | 20 | 270 | 1.10e-44 | 152 |
| Msa1229400 | AT2G23600.3 | 45.732 | 164 | 85 | 2 | 26 | 186 | 23 | 185 | 9.08e-43 | 145 |
| Msa1229400 | AT2G23550.2 | 35.714 | 266 | 126 | 7 | 24 | 281 | 5 | 233 | 1.04e-41 | 144 |
| Msa1229400 | AT2G23580.2 | 44.970 | 169 | 80 | 6 | 24 | 184 | 5 | 168 | 2.31e-37 | 131 |
| Msa1229400 | AT4G37140.1 | 50.459 | 109 | 53 | 1 | 26 | 134 | 2 | 109 | 5.23e-34 | 120 |
| Msa1229400 | AT2G23550.3 | 42.012 | 169 | 85 | 5 | 24 | 184 | 12 | 175 | 7.61e-33 | 120 |
| Msa1229400 | AT5G10300.2 | 41.718 | 163 | 93 | 2 | 27 | 188 | 6 | 167 | 1.39e-31 | 116 |
| Msa1229400 | AT2G23570.1 | 39.011 | 182 | 101 | 5 | 105 | 281 | 2 | 178 | 6.75e-29 | 108 |
| Msa1229400 | AT4G37140.2 | 50.000 | 92 | 45 | 1 | 26 | 117 | 2 | 92 | 1.27e-28 | 105 |
| Msa1229400 | AT3G29770.2 | 48.649 | 74 | 37 | 1 | 27 | 100 | 138 | 210 | 1.10e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTTTGATATCATTTA+TGG | 0.078023 | 8_2:-5108665 | Msa1229400:CDS |
| CCACAGTTATTGTTCTTAAA+TGG | 0.151463 | 8_2:-5107935 | Msa1229400:CDS |
| GAATTACAGTTGTGAAATTA+AGG | 0.203942 | 8_2:+5108506 | None:intergenic |
| CCTCCAACTGCCTTGTTGTT+TGG | 0.223716 | 8_2:-5107902 | Msa1229400:CDS |
| ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8_2:-5108616 | Msa1229400:CDS |
| TAATGTTAGCACAATTGATT+TGG | 0.307926 | 8_2:-5108749 | Msa1229400:CDS |
| TGCTGAGGTGAAAGTGATAA+AGG | 0.318232 | 8_2:-5106755 | Msa1229400:CDS |
| TTGCTGATAATGAAGACTTT+TGG | 0.340901 | 8_2:+5106838 | None:intergenic |
| TGAATCTCTTGGACCTGTAT+TGG | 0.346355 | 8_2:+5108709 | None:intergenic |
| TACTCTTCCATTCCTTTGCT+TGG | 0.354752 | 8_2:+5106861 | None:intergenic |
| CAGATGAGATGCCAAGAGTT+TGG | 0.357433 | 8_2:+5107877 | None:intergenic |
| TTTGTGCTTGTTCATGGAGC+TGG | 0.361826 | 8_2:-5108826 | Msa1229400:CDS |
| ATATCATCAAGATGTTTAAC+CGG | 0.368404 | 8_2:-5108918 | None:intergenic |
| ACAATTGATTTGGCTGCTTC+AGG | 0.377565 | 8_2:-5108739 | Msa1229400:CDS |
| AATTACAGTTGTGAAATTAA+GGG | 0.385824 | 8_2:+5108507 | None:intergenic |
| AAGGCAGTTGGAGGACTGTT+TGG | 0.392141 | 8_2:+5107911 | None:intergenic |
| ATCACTTTCACCTCAGCATA+AGG | 0.395471 | 8_2:+5106760 | None:intergenic |
| AAGCACTTTGTGCTTGTTCA+TGG | 0.396917 | 8_2:-5108832 | Msa1229400:CDS |
| TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 8_2:-5108800 | Msa1229400:CDS |
| AAATATTTGAATGAATCTCT+TGG | 0.405238 | 8_2:+5108698 | None:intergenic |
| TTTGACACTTGGATCATCAT+TGG | 0.411517 | 8_2:-5106941 | Msa1229400:CDS |
| TCAACACAACGTGTCTTTCC+CGG | 0.414773 | 8_2:+5108899 | None:intergenic |
| GTTGTTTGGATCCAAACTCT+TGG | 0.434228 | 8_2:-5107888 | Msa1229400:CDS |
| GATAAAGGGTTCAGATCATA+TGG | 0.444154 | 8_2:-5106740 | Msa1229400:CDS |
| CATGCGTAGGATTTGACACT+TGG | 0.451930 | 8_2:-5106952 | Msa1229400:intron |
| TTCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 8_2:-5108641 | Msa1229400:CDS |
| GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8_2:-5108590 | Msa1229400:CDS |
| AAGGAAAAGGTGATTCTTGT+GGG | 0.492621 | 8_2:-5108628 | Msa1229400:CDS |
| GCTGAGGTGAAAGTGATAAA+GGG | 0.493443 | 8_2:-5106754 | Msa1229400:CDS |
| TTAGAGAGGATATGCAGTTA+TGG | 0.507529 | 8_2:-5106801 | Msa1229400:CDS |
| ATGGAGCTGGCCATGGTGCA+TGG | 0.509766 | 8_2:-5108813 | Msa1229400:CDS |
| TTATGGATAATTGAGAGAAC+TGG | 0.510143 | 8_2:-5106784 | Msa1229400:CDS |
| GCAACTATGCTTAAATCAGC+TGG | 0.513884 | 8_2:-5108775 | Msa1229400:CDS |
| TTCAGGTATCAATCCAATAC+AGG | 0.517321 | 8_2:-5108722 | Msa1229400:CDS |
| TATGGATTCTCTTCCTCCAA+AGG | 0.520175 | 8_2:-5108647 | Msa1229400:CDS |
| GATCCAAACAACAAGGCAGT+TGG | 0.527636 | 8_2:+5107899 | None:intergenic |
| CTGGCCATGGTGCATGGTGT+TGG | 0.530072 | 8_2:-5108807 | Msa1229400:CDS |
| TTGTCATTAAAGATAGGATG+TGG | 0.530621 | 8_2:+5106913 | None:intergenic |
| CTTGTTCATGGAGCTGGCCA+TGG | 0.536035 | 8_2:-5108820 | Msa1229400:CDS |
| AAAGGAAAAGGTGATTCTTG+TGG | 0.537925 | 8_2:-5108629 | Msa1229400:CDS |
| AGAGTTACCAAGCAAAGGAA+TGG | 0.542269 | 8_2:-5106868 | Msa1229400:CDS |
| TTTCACAACTGTAATTCAAG+AGG | 0.547572 | 8_2:-5108500 | Msa1229400:intron |
| GTATCAATTATCGCCTAATG+AGG | 0.552044 | 8_2:-5107855 | Msa1229400:intron |
| TTTAAGAACAATAACTGTGG+TGG | 0.553701 | 8_2:+5107938 | None:intergenic |
| AAAGTCTTCATTATCAGCAA+AGG | 0.566673 | 8_2:-5106835 | Msa1229400:CDS |
| CCAAACAACAAGGCAGTTGG+AGG | 0.578597 | 8_2:+5107902 | None:intergenic |
| TATCATCAAGATGTTTAACC+GGG | 0.579472 | 8_2:-5108917 | None:intergenic |
| AAACAAGAGTTACCAAGCAA+AGG | 0.598148 | 8_2:-5106873 | Msa1229400:CDS |
| CACTTGGATCATCATTGGTG+AGG | 0.609021 | 8_2:-5106936 | Msa1229400:CDS |
| GAATCCATAAATGATATCAA+AGG | 0.609540 | 8_2:+5108661 | None:intergenic |
| AGGAGACAATATCATTAGAG+AGG | 0.640958 | 8_2:-5106815 | Msa1229400:CDS |
| TATACCAACACCATGCACCA+TGG | 0.666354 | 8_2:+5108803 | None:intergenic |
| GAGTTTGGATCCAAACAACA+AGG | 0.680669 | 8_2:+5107892 | None:intergenic |
| AGCAATCTTTAGTATGTGAG+AGG | 0.702231 | 8_2:+5106690 | None:intergenic |
| CCATTTAAGAACAATAACTG+TGG | 0.713087 | 8_2:+5107935 | None:intergenic |
| GAGAACTGGTCCTTATGCTG+AGG | 0.742670 | 8_2:-5106770 | Msa1229400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATATTAATAAAAATT+AGG | - | chr8_2:5107305-5107324 | Msa1229400:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr8_2:5108568-5108587 | None:intergenic | 0.0% |
| !! | TATTTATATTAATAAAAATT+AGG | - | chr8_2:5107305-5107324 | Msa1229400:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr8_2:5108568-5108587 | None:intergenic | 0.0% |
| !! | AATATAAATATATATAACCA+TGG | + | chr8_2:5107295-5107314 | None:intergenic | 10.0% |
| !! | AAAATAATAATCAAATTCAA+AGG | + | chr8_2:5107347-5107366 | None:intergenic | 10.0% |
| !! | AATGCAAAATTAAAATTATT+AGG | - | chr8_2:5107501-5107520 | Msa1229400:intron | 10.0% |
| !! | ATGCAAAATTAAAATTATTA+GGG | - | chr8_2:5107502-5107521 | Msa1229400:intron | 10.0% |
| !!! | TTATAATTTGAAGTTTAATT+TGG | + | chr8_2:5108050-5108069 | None:intergenic | 10.0% |
| !! | AAAATTCATACATATATATA+TGG | - | chr8_2:5108421-5108440 | Msa1229400:intron | 10.0% |
| !! | AAATTCATACATATATATAT+GGG | - | chr8_2:5108422-5108441 | Msa1229400:intron | 10.0% |
| !! | AATATAAATATATATAACCA+TGG | + | chr8_2:5107295-5107314 | None:intergenic | 10.0% |
| !! | AAAATAATAATCAAATTCAA+AGG | + | chr8_2:5107347-5107366 | None:intergenic | 10.0% |
| !! | AATGCAAAATTAAAATTATT+AGG | - | chr8_2:5107501-5107520 | Msa1229400:intron | 10.0% |
| !! | ATGCAAAATTAAAATTATTA+GGG | - | chr8_2:5107502-5107521 | Msa1229400:intron | 10.0% |
| !!! | TTATAATTTGAAGTTTAATT+TGG | + | chr8_2:5108050-5108069 | None:intergenic | 10.0% |
| !! | AAAATTCATACATATATATA+TGG | - | chr8_2:5108421-5108440 | Msa1229400:intron | 10.0% |
| !! | AAATTCATACATATATATAT+GGG | - | chr8_2:5108422-5108441 | Msa1229400:intron | 10.0% |
| !!! | TTTATTCTTTCATTTTTCAT+TGG | - | chr8_2:5106720-5106739 | Msa1229400:CDS | 15.0% |
| !! | GTAAGAAAACAAAATTATAA+AGG | + | chr8_2:5107379-5107398 | None:intergenic | 15.0% |
| !!! | GCATTTTAATTTCTAATAAA+AGG | + | chr8_2:5107486-5107505 | None:intergenic | 15.0% |
| !!! | AAAGGAATTAATTTTAATTG+TGG | - | chr8_2:5107564-5107583 | Msa1229400:intron | 15.0% |
| !!! | TGATTGAAAATTTGAAATAA+AGG | - | chr8_2:5107769-5107788 | Msa1229400:intron | 15.0% |
| !!! | TTGTTGTTGTTAATTTTTAA+AGG | - | chr8_2:5107892-5107911 | Msa1229400:CDS | 15.0% |
| !!! | TGTTGTTGTTAATTTTTAAA+GGG | - | chr8_2:5107893-5107912 | Msa1229400:CDS | 15.0% |
| !! | ATTAAACTTCAAATTATAAG+AGG | - | chr8_2:5108051-5108070 | Msa1229400:intron | 15.0% |
| !! | CAAATAAGTTTATAGATTAT+TGG | + | chr8_2:5108105-5108124 | None:intergenic | 15.0% |
| !! | TGTTACAATCAATATATATT+CGG | + | chr8_2:5108615-5108634 | None:intergenic | 15.0% |
| !!! | TTTATTCTTTCATTTTTCAT+TGG | - | chr8_2:5106720-5106739 | Msa1229400:CDS | 15.0% |
| !! | GTAAGAAAACAAAATTATAA+AGG | + | chr8_2:5107379-5107398 | None:intergenic | 15.0% |
| !!! | GCATTTTAATTTCTAATAAA+AGG | + | chr8_2:5107486-5107505 | None:intergenic | 15.0% |
| !!! | AAAGGAATTAATTTTAATTG+TGG | - | chr8_2:5107564-5107583 | Msa1229400:intron | 15.0% |
| !!! | TGATTGAAAATTTGAAATAA+AGG | - | chr8_2:5107769-5107788 | Msa1229400:intron | 15.0% |
| !!! | TTGTTGTTGTTAATTTTTAA+AGG | - | chr8_2:5107892-5107911 | Msa1229400:CDS | 15.0% |
| !!! | TGTTGTTGTTAATTTTTAAA+GGG | - | chr8_2:5107893-5107912 | Msa1229400:CDS | 15.0% |
| !! | ATTAAACTTCAAATTATAAG+AGG | - | chr8_2:5108051-5108070 | Msa1229400:intron | 15.0% |
| !! | CAAATAAGTTTATAGATTAT+TGG | + | chr8_2:5108105-5108124 | None:intergenic | 15.0% |
| !! | TGTTACAATCAATATATATT+CGG | + | chr8_2:5108615-5108634 | None:intergenic | 15.0% |
| !! | AAATATTTGAATGAATCTCT+TGG | + | chr8_2:5106890-5106909 | None:intergenic | 20.0% |
| !! | AATTACAGTTGTGAAATTAA+GGG | + | chr8_2:5107081-5107100 | None:intergenic | 20.0% |
| !!! | AAATATGTGATGGATTAATA+AGG | - | chr8_2:5107173-5107192 | Msa1229400:intron | 20.0% |
| !! | TCTATTATTCAAGAAAAAGA+GGG | + | chr8_2:5107202-5107221 | None:intergenic | 20.0% |
| !! | TTCTATTATTCAAGAAAAAG+AGG | + | chr8_2:5107203-5107222 | None:intergenic | 20.0% |
| !! | TCAAGAGAAAATATCATAAA+GGG | + | chr8_2:5108159-5108178 | None:intergenic | 20.0% |
| !! | ATCAAGAGAAAATATCATAA+AGG | + | chr8_2:5108160-5108179 | None:intergenic | 20.0% |
| !!! | AGTTTTTTGTCATTAAAGAT+AGG | + | chr8_2:5108681-5108700 | None:intergenic | 20.0% |
| !! | AAATATTTGAATGAATCTCT+TGG | + | chr8_2:5106890-5106909 | None:intergenic | 20.0% |
| !! | AATTACAGTTGTGAAATTAA+GGG | + | chr8_2:5107081-5107100 | None:intergenic | 20.0% |
| !!! | AAATATGTGATGGATTAATA+AGG | - | chr8_2:5107173-5107192 | Msa1229400:intron | 20.0% |
| !! | TCTATTATTCAAGAAAAAGA+GGG | + | chr8_2:5107202-5107221 | None:intergenic | 20.0% |
| !! | TTCTATTATTCAAGAAAAAG+AGG | + | chr8_2:5107203-5107222 | None:intergenic | 20.0% |
| !! | TCAAGAGAAAATATCATAAA+GGG | + | chr8_2:5108159-5108178 | None:intergenic | 20.0% |
| !! | ATCAAGAGAAAATATCATAA+AGG | + | chr8_2:5108160-5108179 | None:intergenic | 20.0% |
| !!! | AGTTTTTTGTCATTAAAGAT+AGG | + | chr8_2:5108681-5108700 | None:intergenic | 20.0% |
| ! | TAATGTTAGCACAATTGATT+TGG | - | chr8_2:5106836-5106855 | Msa1229400:CDS | 25.0% |
| ! | TGAACCTTTGATATCATTTA+TGG | - | chr8_2:5106920-5106939 | Msa1229400:CDS | 25.0% |
| ! | GAATCCATAAATGATATCAA+AGG | + | chr8_2:5106927-5106946 | None:intergenic | 25.0% |
| ! | GAATTACAGTTGTGAAATTA+AGG | + | chr8_2:5107082-5107101 | None:intergenic | 25.0% |
| ! | TCCCACATTTATATATTAGA+AGG | - | chr8_2:5107126-5107145 | Msa1229400:intron | 25.0% |
| ! | CCCTTCTAATATATAAATGT+GGG | + | chr8_2:5107130-5107149 | None:intergenic | 25.0% |
| ! | CCCACATTTATATATTAGAA+GGG | - | chr8_2:5107127-5107146 | Msa1229400:intron | 25.0% |
| ! | CCACATTTATATATTAGAAG+GGG | - | chr8_2:5107128-5107147 | Msa1229400:intron | 25.0% |
| !!! | TATATATTAGAAGGGGTATT+CGG | - | chr8_2:5107135-5107154 | Msa1229400:intron | 25.0% |
| ! | TTAAGACTCAAAATATGTGA+TGG | - | chr8_2:5107163-5107182 | Msa1229400:intron | 25.0% |
| ! | AATAGAATAAAGTCTTGATC+TGG | - | chr8_2:5107216-5107235 | Msa1229400:intron | 25.0% |
| ! | TTCATCAACTCAGAATTTAA+AGG | - | chr8_2:5107546-5107565 | Msa1229400:intron | 25.0% |
| !! | TTAAAGGGTTATTTCAAAGT+TGG | - | chr8_2:5107908-5107927 | Msa1229400:CDS | 25.0% |
| ! | GATTACTTCAACAAATCTAA+AGG | + | chr8_2:5107941-5107960 | None:intergenic | 25.0% |
| !! | ATATTTTCTCTTGATATCAC+TGG | - | chr8_2:5108165-5108184 | Msa1229400:intron | 25.0% |
| ! | ATATGTTAAAGTACGTAACT+TGG | + | chr8_2:5108206-5108225 | None:intergenic | 25.0% |
| !! | TTAGAAGACACATTTTATGA+AGG | - | chr8_2:5108248-5108267 | Msa1229400:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr8_2:5108310-5108329 | Msa1229400:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr8_2:5108316-5108335 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | + | chr8_2:5108508-5108527 | None:intergenic | 25.0% |
| !! | CTAGAAAACAGTTTTTATGA+AGG | + | chr8_2:5108540-5108559 | None:intergenic | 25.0% |
| ! | TAATGTTAGCACAATTGATT+TGG | - | chr8_2:5106836-5106855 | Msa1229400:CDS | 25.0% |
| ! | TGAACCTTTGATATCATTTA+TGG | - | chr8_2:5106920-5106939 | Msa1229400:CDS | 25.0% |
| ! | GAATCCATAAATGATATCAA+AGG | + | chr8_2:5106927-5106946 | None:intergenic | 25.0% |
| ! | GAATTACAGTTGTGAAATTA+AGG | + | chr8_2:5107082-5107101 | None:intergenic | 25.0% |
| ! | TCCCACATTTATATATTAGA+AGG | - | chr8_2:5107126-5107145 | Msa1229400:intron | 25.0% |
| ! | CCCTTCTAATATATAAATGT+GGG | + | chr8_2:5107130-5107149 | None:intergenic | 25.0% |
| ! | CCCACATTTATATATTAGAA+GGG | - | chr8_2:5107127-5107146 | Msa1229400:intron | 25.0% |
| ! | CCACATTTATATATTAGAAG+GGG | - | chr8_2:5107128-5107147 | Msa1229400:intron | 25.0% |
| !!! | TATATATTAGAAGGGGTATT+CGG | - | chr8_2:5107135-5107154 | Msa1229400:intron | 25.0% |
| ! | TTAAGACTCAAAATATGTGA+TGG | - | chr8_2:5107163-5107182 | Msa1229400:intron | 25.0% |
| ! | AATAGAATAAAGTCTTGATC+TGG | - | chr8_2:5107216-5107235 | Msa1229400:intron | 25.0% |
| ! | TTCATCAACTCAGAATTTAA+AGG | - | chr8_2:5107546-5107565 | Msa1229400:intron | 25.0% |
| !! | TTAAAGGGTTATTTCAAAGT+TGG | - | chr8_2:5107908-5107927 | Msa1229400:CDS | 25.0% |
| ! | GATTACTTCAACAAATCTAA+AGG | + | chr8_2:5107941-5107960 | None:intergenic | 25.0% |
| !! | ATATTTTCTCTTGATATCAC+TGG | - | chr8_2:5108165-5108184 | Msa1229400:intron | 25.0% |
| ! | ATATGTTAAAGTACGTAACT+TGG | + | chr8_2:5108206-5108225 | None:intergenic | 25.0% |
| !! | TTAGAAGACACATTTTATGA+AGG | - | chr8_2:5108248-5108267 | Msa1229400:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr8_2:5108310-5108329 | Msa1229400:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr8_2:5108316-5108335 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | + | chr8_2:5108508-5108527 | None:intergenic | 25.0% |
| !! | CTAGAAAACAGTTTTTATGA+AGG | + | chr8_2:5108540-5108559 | None:intergenic | 25.0% |
| !!! | TCATTTTTCATTGGTGCTAA+TGG | - | chr8_2:5106729-5106748 | Msa1229400:CDS | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | + | chr8_2:5107002-5107021 | None:intergenic | 30.0% |
| ! | CTGCAACAGAAATTTTCTTA+GGG | + | chr8_2:5107028-5107047 | None:intergenic | 30.0% |
| ! | ACTGCAACAGAAATTTTCTT+AGG | + | chr8_2:5107029-5107048 | None:intergenic | 30.0% |
| TTTCACAACTGTAATTCAAG+AGG | - | chr8_2:5107085-5107104 | Msa1229400:intron | 30.0% | |
| CCCCTTCTAATATATAAATG+TGG | + | chr8_2:5107131-5107150 | None:intergenic | 30.0% | |
| ATGGTTACTAACATCTGAAA+TGG | + | chr8_2:5107276-5107295 | None:intergenic | 30.0% | |
| ATTTCAGATGTTAGTAACCA+TGG | - | chr8_2:5107275-5107294 | Msa1229400:intron | 30.0% | |
| TTTAAGAACAATAACTGTGG+TGG | + | chr8_2:5107650-5107669 | None:intergenic | 30.0% | |
| CCATTTAAGAACAATAACTG+TGG | + | chr8_2:5107653-5107672 | None:intergenic | 30.0% | |
| CCACAGTTATTGTTCTTAAA+TGG | - | chr8_2:5107650-5107669 | Msa1229400:intron | 30.0% | |
| GCAAAAAAGTTTACCTCATT+AGG | + | chr8_2:5107746-5107765 | None:intergenic | 30.0% | |
| TCTTAACCTCCTCATTTATA+GGG | + | chr8_2:5108082-5108101 | None:intergenic | 30.0% | |
| TTGCTAAAAGACACTTTCAT+CGG | - | chr8_2:5108387-5108406 | Msa1229400:intron | 30.0% | |
| ! | ATATTGATTGTAACATGCGT+AGG | - | chr8_2:5108620-5108639 | Msa1229400:CDS | 30.0% |
| TTGTCATTAAAGATAGGATG+TGG | + | chr8_2:5108675-5108694 | None:intergenic | 30.0% | |
| !! | TTGCTGATAATGAAGACTTT+TGG | + | chr8_2:5108750-5108769 | None:intergenic | 30.0% |
| AAAGTCTTCATTATCAGCAA+AGG | - | chr8_2:5108750-5108769 | Msa1229400:CDS | 30.0% | |
| TTATGGATAATTGAGAGAAC+TGG | - | chr8_2:5108801-5108820 | Msa1229400:CDS | 30.0% | |
| !!! | TCATTTTTCATTGGTGCTAA+TGG | - | chr8_2:5106729-5106748 | Msa1229400:CDS | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | + | chr8_2:5107002-5107021 | None:intergenic | 30.0% |
| ! | CTGCAACAGAAATTTTCTTA+GGG | + | chr8_2:5107028-5107047 | None:intergenic | 30.0% |
| ! | ACTGCAACAGAAATTTTCTT+AGG | + | chr8_2:5107029-5107048 | None:intergenic | 30.0% |
| TTTCACAACTGTAATTCAAG+AGG | - | chr8_2:5107085-5107104 | Msa1229400:intron | 30.0% | |
| CCCCTTCTAATATATAAATG+TGG | + | chr8_2:5107131-5107150 | None:intergenic | 30.0% | |
| ATGGTTACTAACATCTGAAA+TGG | + | chr8_2:5107276-5107295 | None:intergenic | 30.0% | |
| ATTTCAGATGTTAGTAACCA+TGG | - | chr8_2:5107275-5107294 | Msa1229400:intron | 30.0% | |
| TTTAAGAACAATAACTGTGG+TGG | + | chr8_2:5107650-5107669 | None:intergenic | 30.0% | |
| CCATTTAAGAACAATAACTG+TGG | + | chr8_2:5107653-5107672 | None:intergenic | 30.0% | |
| CCACAGTTATTGTTCTTAAA+TGG | - | chr8_2:5107650-5107669 | Msa1229400:intron | 30.0% | |
| GCAAAAAAGTTTACCTCATT+AGG | + | chr8_2:5107746-5107765 | None:intergenic | 30.0% | |
| TCTTAACCTCCTCATTTATA+GGG | + | chr8_2:5108082-5108101 | None:intergenic | 30.0% | |
| TTGCTAAAAGACACTTTCAT+CGG | - | chr8_2:5108387-5108406 | Msa1229400:intron | 30.0% | |
| ! | ATATTGATTGTAACATGCGT+AGG | - | chr8_2:5108620-5108639 | Msa1229400:CDS | 30.0% |
| TTGTCATTAAAGATAGGATG+TGG | + | chr8_2:5108675-5108694 | None:intergenic | 30.0% | |
| !! | TTGCTGATAATGAAGACTTT+TGG | + | chr8_2:5108750-5108769 | None:intergenic | 30.0% |
| AAAGTCTTCATTATCAGCAA+AGG | - | chr8_2:5108750-5108769 | Msa1229400:CDS | 30.0% | |
| TTATGGATAATTGAGAGAAC+TGG | - | chr8_2:5108801-5108820 | Msa1229400:CDS | 30.0% | |
| TTCAGGTATCAATCCAATAC+AGG | - | chr8_2:5106863-5106882 | Msa1229400:CDS | 35.0% | |
| ! | ACAAGAATCACCTTTTCCTT+TGG | + | chr8_2:5106957-5106976 | None:intergenic | 35.0% |
| AAAGGAAAAGGTGATTCTTG+TGG | - | chr8_2:5106956-5106975 | Msa1229400:intron | 35.0% | |
| AAGGAAAAGGTGATTCTTGT+GGG | - | chr8_2:5106957-5106976 | Msa1229400:intron | 35.0% | |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | - | chr8_2:5106969-5106988 | Msa1229400:intron | 35.0% |
| ! | CTTTTCCATAGCAACAGATA+AGG | + | chr8_2:5107003-5107022 | None:intergenic | 35.0% |
| AGAATAAAGTCTTGATCTGG+TGG | - | chr8_2:5107219-5107238 | Msa1229400:intron | 35.0% | |
| AGTTCTTCTCTCATTCTATG+AGG | + | chr8_2:5107618-5107637 | None:intergenic | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | - | chr8_2:5107730-5107749 | Msa1229400:intron | 35.0% | |
| GTCTTAACCTCCTCATTTAT+AGG | + | chr8_2:5108083-5108102 | None:intergenic | 35.0% | |
| !! | CGTAACTTGGTGTATACATT+TGG | + | chr8_2:5108193-5108212 | None:intergenic | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr8_2:5108358-5108377 | Msa1229400:intron | 35.0% | |
| AAAGTGGAAATCACACCTTA+AGG | + | chr8_2:5108492-5108511 | None:intergenic | 35.0% | |
| TTTGACACTTGGATCATCAT+TGG | - | chr8_2:5108644-5108663 | Msa1229400:CDS | 35.0% | |
| AAACAAGAGTTACCAAGCAA+AGG | - | chr8_2:5108712-5108731 | Msa1229400:CDS | 35.0% | |
| AGGAGACAATATCATTAGAG+AGG | - | chr8_2:5108770-5108789 | Msa1229400:CDS | 35.0% | |
| TTAGAGAGGATATGCAGTTA+TGG | - | chr8_2:5108784-5108803 | Msa1229400:CDS | 35.0% | |
| GATAAAGGGTTCAGATCATA+TGG | - | chr8_2:5108845-5108864 | Msa1229400:CDS | 35.0% | |
| !!! | AGAGGTGAGTTTTTTAGGTT+TGG | + | chr8_2:5108880-5108899 | None:intergenic | 35.0% |
| !!! | ATGTGAGAGGTGAGTTTTTT+AGG | + | chr8_2:5108885-5108904 | None:intergenic | 35.0% |
| AGCAATCTTTAGTATGTGAG+AGG | + | chr8_2:5108898-5108917 | None:intergenic | 35.0% | |
| TTCAGGTATCAATCCAATAC+AGG | - | chr8_2:5106863-5106882 | Msa1229400:CDS | 35.0% | |
| ! | ACAAGAATCACCTTTTCCTT+TGG | + | chr8_2:5106957-5106976 | None:intergenic | 35.0% |
| AAAGGAAAAGGTGATTCTTG+TGG | - | chr8_2:5106956-5106975 | Msa1229400:intron | 35.0% | |
| AAGGAAAAGGTGATTCTTGT+GGG | - | chr8_2:5106957-5106976 | Msa1229400:intron | 35.0% | |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | - | chr8_2:5106969-5106988 | Msa1229400:intron | 35.0% |
| ! | CTTTTCCATAGCAACAGATA+AGG | + | chr8_2:5107003-5107022 | None:intergenic | 35.0% |
| AGAATAAAGTCTTGATCTGG+TGG | - | chr8_2:5107219-5107238 | Msa1229400:intron | 35.0% | |
| AGTTCTTCTCTCATTCTATG+AGG | + | chr8_2:5107618-5107637 | None:intergenic | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | - | chr8_2:5107730-5107749 | Msa1229400:intron | 35.0% | |
| GTCTTAACCTCCTCATTTAT+AGG | + | chr8_2:5108083-5108102 | None:intergenic | 35.0% | |
| !! | CGTAACTTGGTGTATACATT+TGG | + | chr8_2:5108193-5108212 | None:intergenic | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr8_2:5108358-5108377 | Msa1229400:intron | 35.0% | |
| AAAGTGGAAATCACACCTTA+AGG | + | chr8_2:5108492-5108511 | None:intergenic | 35.0% | |
| TTTGACACTTGGATCATCAT+TGG | - | chr8_2:5108644-5108663 | Msa1229400:CDS | 35.0% | |
| AAACAAGAGTTACCAAGCAA+AGG | - | chr8_2:5108712-5108731 | Msa1229400:CDS | 35.0% | |
| AGGAGACAATATCATTAGAG+AGG | - | chr8_2:5108770-5108789 | Msa1229400:CDS | 35.0% | |
| TTAGAGAGGATATGCAGTTA+TGG | - | chr8_2:5108784-5108803 | Msa1229400:CDS | 35.0% | |
| GATAAAGGGTTCAGATCATA+TGG | - | chr8_2:5108845-5108864 | Msa1229400:CDS | 35.0% | |
| !!! | AGAGGTGAGTTTTTTAGGTT+TGG | + | chr8_2:5108880-5108899 | None:intergenic | 35.0% |
| !!! | ATGTGAGAGGTGAGTTTTTT+AGG | + | chr8_2:5108885-5108904 | None:intergenic | 35.0% |
| AGCAATCTTTAGTATGTGAG+AGG | + | chr8_2:5108898-5108917 | None:intergenic | 35.0% | |
| AAGCACTTTGTGCTTGTTCA+TGG | - | chr8_2:5106753-5106772 | Msa1229400:CDS | 40.0% | |
| GCAACTATGCTTAAATCAGC+TGG | - | chr8_2:5106810-5106829 | Msa1229400:CDS | 40.0% | |
| !! | ACAATTGATTTGGCTGCTTC+AGG | - | chr8_2:5106846-5106865 | Msa1229400:CDS | 40.0% |
| TGAATCTCTTGGACCTGTAT+TGG | + | chr8_2:5106879-5106898 | None:intergenic | 40.0% | |
| TATGGATTCTCTTCCTCCAA+AGG | - | chr8_2:5106938-5106957 | Msa1229400:CDS | 40.0% | |
| TTCTCTTCCTCCAAAGGAAA+AGG | - | chr8_2:5106944-5106963 | Msa1229400:CDS | 40.0% | |
| ! | AGAATCACCTTTTCCTTTGG+AGG | + | chr8_2:5106954-5106973 | None:intergenic | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | - | chr8_2:5106973-5106992 | Msa1229400:intron | 40.0% |
| GATACCCTTATCTGTTGCTA+TGG | - | chr8_2:5106995-5107014 | Msa1229400:intron | 40.0% | |
| GAGTTTGGATCCAAACAACA+AGG | + | chr8_2:5107696-5107715 | None:intergenic | 40.0% | |
| GTTGTTTGGATCCAAACTCT+TGG | - | chr8_2:5107697-5107716 | Msa1229400:intron | 40.0% | |
| GAGGACTTTCCCTATAAATG+AGG | - | chr8_2:5108070-5108089 | Msa1229400:intron | 40.0% | |
| GACTTTCCCTATAAATGAGG+AGG | - | chr8_2:5108073-5108092 | Msa1229400:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr8_2:5108376-5108395 | None:intergenic | 40.0% |
| CTAAAAGACACTTTCATCGG+TGG | - | chr8_2:5108390-5108409 | Msa1229400:intron | 40.0% | |
| CTAAAAGACACCTTCATGGA+TGG | + | chr8_2:5108460-5108479 | None:intergenic | 40.0% | |
| GTTGCTAAAAGACACCTTCA+TGG | + | chr8_2:5108464-5108483 | None:intergenic | 40.0% | |
| ! | TTTTAGCAACCCACACCTTA+AGG | - | chr8_2:5108474-5108493 | Msa1229400:intron | 40.0% |
| GAAATCACACCTTAAGGTGT+GGG | + | chr8_2:5108486-5108505 | None:intergenic | 40.0% | |
| AGAGTTACCAAGCAAAGGAA+TGG | - | chr8_2:5108717-5108736 | Msa1229400:CDS | 40.0% | |
| TACTCTTCCATTCCTTTGCT+TGG | + | chr8_2:5108727-5108746 | None:intergenic | 40.0% | |
| ATCACTTTCACCTCAGCATA+AGG | + | chr8_2:5108828-5108847 | None:intergenic | 40.0% | |
| TGCTGAGGTGAAAGTGATAA+AGG | - | chr8_2:5108830-5108849 | Msa1229400:CDS | 40.0% | |
| GCTGAGGTGAAAGTGATAAA+GGG | - | chr8_2:5108831-5108850 | Msa1229400:CDS | 40.0% | |
| AAGCACTTTGTGCTTGTTCA+TGG | - | chr8_2:5106753-5106772 | Msa1229400:CDS | 40.0% | |
| GCAACTATGCTTAAATCAGC+TGG | - | chr8_2:5106810-5106829 | Msa1229400:CDS | 40.0% | |
| !! | ACAATTGATTTGGCTGCTTC+AGG | - | chr8_2:5106846-5106865 | Msa1229400:CDS | 40.0% |
| TGAATCTCTTGGACCTGTAT+TGG | + | chr8_2:5106879-5106898 | None:intergenic | 40.0% | |
| TATGGATTCTCTTCCTCCAA+AGG | - | chr8_2:5106938-5106957 | Msa1229400:CDS | 40.0% | |
| TTCTCTTCCTCCAAAGGAAA+AGG | - | chr8_2:5106944-5106963 | Msa1229400:CDS | 40.0% | |
| ! | AGAATCACCTTTTCCTTTGG+AGG | + | chr8_2:5106954-5106973 | None:intergenic | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | - | chr8_2:5106973-5106992 | Msa1229400:intron | 40.0% |
| GATACCCTTATCTGTTGCTA+TGG | - | chr8_2:5106995-5107014 | Msa1229400:intron | 40.0% | |
| GAGTTTGGATCCAAACAACA+AGG | + | chr8_2:5107696-5107715 | None:intergenic | 40.0% | |
| GTTGTTTGGATCCAAACTCT+TGG | - | chr8_2:5107697-5107716 | Msa1229400:intron | 40.0% | |
| GAGGACTTTCCCTATAAATG+AGG | - | chr8_2:5108070-5108089 | Msa1229400:intron | 40.0% | |
| GACTTTCCCTATAAATGAGG+AGG | - | chr8_2:5108073-5108092 | Msa1229400:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr8_2:5108376-5108395 | None:intergenic | 40.0% |
| CTAAAAGACACTTTCATCGG+TGG | - | chr8_2:5108390-5108409 | Msa1229400:intron | 40.0% | |
| CTAAAAGACACCTTCATGGA+TGG | + | chr8_2:5108460-5108479 | None:intergenic | 40.0% | |
| GTTGCTAAAAGACACCTTCA+TGG | + | chr8_2:5108464-5108483 | None:intergenic | 40.0% | |
| ! | TTTTAGCAACCCACACCTTA+AGG | - | chr8_2:5108474-5108493 | Msa1229400:intron | 40.0% |
| GAAATCACACCTTAAGGTGT+GGG | + | chr8_2:5108486-5108505 | None:intergenic | 40.0% | |
| AGAGTTACCAAGCAAAGGAA+TGG | - | chr8_2:5108717-5108736 | Msa1229400:CDS | 40.0% | |
| TACTCTTCCATTCCTTTGCT+TGG | + | chr8_2:5108727-5108746 | None:intergenic | 40.0% | |
| ATCACTTTCACCTCAGCATA+AGG | + | chr8_2:5108828-5108847 | None:intergenic | 40.0% | |
| TGCTGAGGTGAAAGTGATAA+AGG | - | chr8_2:5108830-5108849 | Msa1229400:CDS | 40.0% | |
| GCTGAGGTGAAAGTGATAAA+GGG | - | chr8_2:5108831-5108850 | Msa1229400:CDS | 40.0% | |
| TCAACACAACGTGTCTTTCC+CGG | + | chr8_2:5106689-5106708 | None:intergenic | 45.0% | |
| TTTGTGCTTGTTCATGGAGC+TGG | - | chr8_2:5106759-5106778 | Msa1229400:CDS | 45.0% | |
| TATACCAACACCATGCACCA+TGG | + | chr8_2:5106785-5106804 | None:intergenic | 45.0% | |
| !! | TGGTGCATGGTGTTGGTATA+AGG | - | chr8_2:5106785-5106804 | Msa1229400:CDS | 45.0% |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | - | chr8_2:5106972-5106991 | Msa1229400:intron | 45.0% |
| GATCCAAACAACAAGGCAGT+TGG | + | chr8_2:5107689-5107708 | None:intergenic | 45.0% | |
| CAGATGAGATGCCAAGAGTT+TGG | + | chr8_2:5107711-5107730 | None:intergenic | 45.0% | |
| GAAAATCACACCTTGAGGTG+TGG | - | chr8_2:5108363-5108382 | Msa1229400:intron | 45.0% | |
| TTGCTAGAAGCCATCCATGA+AGG | - | chr8_2:5108447-5108466 | Msa1229400:intron | 45.0% | |
| GGAAATCACACCTTAAGGTG+TGG | + | chr8_2:5108487-5108506 | None:intergenic | 45.0% | |
| CATGCGTAGGATTTGACACT+TGG | - | chr8_2:5108633-5108652 | Msa1229400:CDS | 45.0% | |
| CACTTGGATCATCATTGGTG+AGG | - | chr8_2:5108649-5108668 | Msa1229400:CDS | 45.0% | |
| TCAACACAACGTGTCTTTCC+CGG | + | chr8_2:5106689-5106708 | None:intergenic | 45.0% | |
| TTTGTGCTTGTTCATGGAGC+TGG | - | chr8_2:5106759-5106778 | Msa1229400:CDS | 45.0% | |
| TATACCAACACCATGCACCA+TGG | + | chr8_2:5106785-5106804 | None:intergenic | 45.0% | |
| !! | TGGTGCATGGTGTTGGTATA+AGG | - | chr8_2:5106785-5106804 | Msa1229400:CDS | 45.0% |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | - | chr8_2:5106972-5106991 | Msa1229400:intron | 45.0% |
| GATCCAAACAACAAGGCAGT+TGG | + | chr8_2:5107689-5107708 | None:intergenic | 45.0% | |
| CAGATGAGATGCCAAGAGTT+TGG | + | chr8_2:5107711-5107730 | None:intergenic | 45.0% | |
| GAAAATCACACCTTGAGGTG+TGG | - | chr8_2:5108363-5108382 | Msa1229400:intron | 45.0% | |
| TTGCTAGAAGCCATCCATGA+AGG | - | chr8_2:5108447-5108466 | Msa1229400:intron | 45.0% | |
| GGAAATCACACCTTAAGGTG+TGG | + | chr8_2:5108487-5108506 | None:intergenic | 45.0% | |
| CATGCGTAGGATTTGACACT+TGG | - | chr8_2:5108633-5108652 | Msa1229400:CDS | 45.0% | |
| CACTTGGATCATCATTGGTG+AGG | - | chr8_2:5108649-5108668 | Msa1229400:CDS | 45.0% | |
| !! | ACATATTATATATATATATA+TGG | - | chr8_2:5108220-5108239 | Msa1229400:intron | 5.0% |
| !! | ACATATTATATATATATATA+TGG | - | chr8_2:5108220-5108239 | Msa1229400:intron | 5.0% |
| AAGGCAGTTGGAGGACTGTT+TGG | + | chr8_2:5107677-5107696 | None:intergenic | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | + | chr8_2:5107686-5107705 | None:intergenic | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | - | chr8_2:5107683-5107702 | Msa1229400:intron | 50.0% |
| GAGAACTGGTCCTTATGCTG+AGG | - | chr8_2:5108815-5108834 | Msa1229400:CDS | 50.0% | |
| AAGGCAGTTGGAGGACTGTT+TGG | + | chr8_2:5107677-5107696 | None:intergenic | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | + | chr8_2:5107686-5107705 | None:intergenic | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | - | chr8_2:5107683-5107702 | Msa1229400:intron | 50.0% |
| GAGAACTGGTCCTTATGCTG+AGG | - | chr8_2:5108815-5108834 | Msa1229400:CDS | 50.0% | |
| CTTGTTCATGGAGCTGGCCA+TGG | - | chr8_2:5106765-5106784 | Msa1229400:CDS | 55.0% | |
| CTTGTTCATGGAGCTGGCCA+TGG | - | chr8_2:5106765-5106784 | Msa1229400:CDS | 55.0% | |
| ATGGAGCTGGCCATGGTGCA+TGG | - | chr8_2:5106772-5106791 | Msa1229400:CDS | 60.0% | |
| CTGGCCATGGTGCATGGTGT+TGG | - | chr8_2:5106778-5106797 | Msa1229400:CDS | 60.0% | |
| ATGGAGCTGGCCATGGTGCA+TGG | - | chr8_2:5106772-5106791 | Msa1229400:CDS | 60.0% | |
| CTGGCCATGGTGCATGGTGT+TGG | - | chr8_2:5106778-5106797 | Msa1229400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 5106678 | 5108929 | 5106678 | ID=Msa1229400;Name=Msa1229400 |
| chr8_2 | mRNA | 5106678 | 5108929 | 5106678 | ID=Msa1229400-mRNA-1;Parent=Msa1229400;Name=Msa1229400-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|3|0|281 |
| chr8_2 | exon | 5108501 | 5108929 | 5108501 | ID=Msa1229400-mRNA-1:exon:1769;Parent=Msa1229400-mRNA-1 |
| chr8_2 | exon | 5107856 | 5107984 | 5107856 | ID=Msa1229400-mRNA-1:exon:1768;Parent=Msa1229400-mRNA-1 |
| chr8_2 | exon | 5106678 | 5106965 | 5106678 | ID=Msa1229400-mRNA-1:exon:1767;Parent=Msa1229400-mRNA-1 |
| chr8_2 | CDS | 5108501 | 5108929 | 5108501 | ID=Msa1229400-mRNA-1:cds;Parent=Msa1229400-mRNA-1 |
| chr8_2 | CDS | 5107856 | 5107984 | 5107856 | ID=Msa1229400-mRNA-1:cds;Parent=Msa1229400-mRNA-1 |
| chr8_2 | CDS | 5106678 | 5106965 | 5106678 | ID=Msa1229400-mRNA-1:cds;Parent=Msa1229400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
