AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583270 MtrunA17_Chr7g0231891 95.714 140 6 0 60 199 1 140 1.22e-96 276
Msa0583270 MtrunA17_Chr7g0231901 90.000 40 4 0 8 47 9 48 7.36e-18 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583270 AT4G00030.1 74.713 174 44 0 26 199 36 209 2.09e-96 279

Find 85 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCATTCTTTCCAGTTAT+AGG 0.262596 4_2:+1783108 None:intergenic
CTTTGCACTTAACTAGTCTT+TGG 0.275001 4_2:-1783007 Msa0583270:three_prime_UTR
TTCGAGTTGCAAAGGATATC+AGG 0.283632 4_2:-1783159 Msa0583270:CDS
ATTGAGAAGGCTGGCTTGTT+TGG 0.287312 4_2:-1787533 Msa0583270:CDS
GTTTGAGAGGTGAATGGGTT+GGG 0.302248 4_2:+1787773 None:intergenic
TTTCTACTCAACTGCCTCTA+TGG 0.328123 4_2:-1783042 Msa0583270:three_prime_UTR
GGTGATTGAGTTTAGTTTCA+TGG 0.343408 4_2:+1787848 None:intergenic
CTAGCTTGGTGGGGCTGTGT+TGG 0.358813 4_2:+1787678 None:intergenic
TGTTATATCTTTCATTCTGC+TGG 0.367200 4_2:+1782768 None:intergenic
GTTGAAAGAGTACAAGATTC+AGG 0.368354 4_2:+1782790 None:intergenic
GAGGGTGAGGAGGTTCTTCT+TGG 0.375325 4_2:+1787730 None:intergenic
TCGACCGAGCTTCCTATAAC+TGG 0.375626 4_2:-1783120 Msa0583270:CDS
CAGTGTTACGTGGAAAGAAC+TGG 0.383547 4_2:-1786084 Msa0583270:CDS
ATGGGAATGTGTGGTGGTGG+TGG 0.384123 4_2:+1787827 None:intergenic
TAGCTTGGTGGGGCTGTGTT+GGG 0.384897 4_2:+1787679 None:intergenic
GGGTCTTGAGGCCACGGTCT+TGG 0.394014 4_2:+1787699 None:intergenic
GAAGAAAAGGGAAGTGGTGG+TGG 0.399827 4_2:+1787796 None:intergenic
TGAATGGGTTGGGGAAGAAA+AGG 0.412186 4_2:+1787783 None:intergenic
TTGGTGGTTTGAGAGGTGAA+TGG 0.418869 4_2:+1787767 None:intergenic
CGGCAACTTGGCGGTTGCTA+TGG 0.431789 4_2:-1787583 Msa0583270:CDS
GGCTTGTTTGGAACTAAAGC+TGG 0.432776 4_2:-1787521 Msa0583270:CDS
GTCGAATATTGAAGTTGCTT+CGG 0.436707 4_2:-1787414 Msa0583270:CDS
GCCATGGGAATGTGTGGTGG+TGG 0.441355 4_2:+1787824 None:intergenic
TGGGGCTGTGTTGGGTCTTG+AGG 0.446898 4_2:+1787687 None:intergenic
ATCGATGCAATGGCCGAGCT+TGG 0.446962 4_2:-1787638 Msa0583270:CDS
AAGGGAAGTGGTGGTGGTGG+TGG 0.451258 4_2:+1787802 None:intergenic
ACGATCGATGCTAGCTTGGT+GGG 0.459047 4_2:+1787668 None:intergenic
AACGATCGATGCTAGCTTGG+TGG 0.460174 4_2:+1787667 None:intergenic
GGTTTGAGAGGTGAATGGGT+TGG 0.461814 4_2:+1787772 None:intergenic
GTGTGGAGAGGGAGTGAGCT+TGG 0.462092 4_2:+1787898 None:intergenic
TGGTGGTTTGAGAGGTGAAT+GGG 0.462983 4_2:+1787768 None:intergenic
TACTGTACCGGTGCCAAGCT+CGG 0.464081 4_2:+1787625 None:intergenic
GAATGGGTTGGGGAAGAAAA+GGG 0.466912 4_2:+1787784 None:intergenic
GAAAAGGGAAGTGGTGGTGG+TGG 0.471337 4_2:+1787799 None:intergenic
CTGTTCATCATTGAGAAGGC+TGG 0.471690 4_2:-1787542 Msa0583270:CDS
ACCATTGCCACCATTCGGAC+AGG 0.473527 4_2:-1786056 Msa0583270:CDS
GGTGAGGAGGTTCTTCTTGG+CGG 0.475367 4_2:+1787733 None:intergenic
TTTGAGAGGTGAATGGGTTG+GGG 0.476901 4_2:+1787774 None:intergenic
CTTTCCAGTTATAGGAAGCT+CGG 0.498636 4_2:+1783116 None:intergenic
GGGGAAGAAAAGGGAAGTGG+TGG 0.500931 4_2:+1787793 None:intergenic
GTGGCCATGGGAATGTGTGG+TGG 0.507585 4_2:+1787821 None:intergenic
GTGGTGGCCATGGGAATGTG+TGG 0.511323 4_2:+1787818 None:intergenic
CCCTGTCCGAATGGTGGCAA+TGG 0.513481 4_2:+1786055 None:intergenic
GAAATACCATTGCCACCATT+CGG 0.514466 4_2:-1786061 Msa0583270:CDS
ATTCCCTGTCGGCAACTTGG+CGG 0.514923 4_2:-1787592 Msa0583270:CDS
GTGATTCCCTGTCGGCAACT+TGG 0.515452 4_2:-1787595 Msa0583270:CDS
TGTGTTGGGTCTTGAGGCCA+CGG 0.515515 4_2:+1787693 None:intergenic
GCAACCGCCAAGTTGCCGAC+AGG 0.517472 4_2:+1787588 None:intergenic
CGAACAAAGAAAACACCATC+AGG 0.525042 4_2:+1787437 None:intergenic
CATTAAAGAAGACAAACAAA+TGG 0.527590 4_2:+1783070 None:intergenic
GTTGGGGAAGAAAAGGGAAG+TGG 0.533661 4_2:+1787790 None:intergenic
AGTTGCCGACAGGGAATCAC+CGG 0.537341 4_2:+1787598 None:intergenic
CACGGTCTTGGTCAGAGATG+AGG 0.542439 4_2:+1787711 None:intergenic
ATCACCGGTGGTTACTGTAC+CGG 0.542477 4_2:+1787613 None:intergenic
GGTAACGATCGATGCTAGCT+TGG 0.545911 4_2:+1787664 None:intergenic
TCGAGTTGCAAAGGATATCA+GGG 0.552456 4_2:-1783158 Msa0583270:CDS
CGATCGATGCTAGCTTGGTG+GGG 0.561592 4_2:+1787669 None:intergenic
CAACCGCCAAGTTGCCGACA+GGG 0.563353 4_2:+1787589 None:intergenic
ACGGTCTTGGTCAGAGATGA+GGG 0.570760 4_2:+1787712 None:intergenic
GCAATGGCCGAGCTTGGCAC+CGG 0.572480 4_2:-1787632 Msa0583270:CDS
TGCCACCATTCGGACAGGGT+TGG 0.580620 4_2:-1786051 Msa0583270:intron
CTATAACTGGAAAGAATGAG+AGG 0.590449 4_2:-1783107 Msa0583270:exon
TGATATCCTTTGCAACTCGA+AGG 0.591269 4_2:+1783161 None:intergenic
CGTTACCGCGATCGATGCAA+TGG 0.591819 4_2:-1787648 Msa0583270:CDS
ACCACCACCACACATTCCCA+TGG 0.596059 4_2:-1787825 Msa0583270:exon
CCATTGCCACCATTCGGACA+GGG 0.598795 4_2:-1786055 Msa0583270:CDS
TGATGACCTTCGAGTTGCAA+AGG 0.605710 4_2:-1783167 Msa0583270:CDS
TTTACGAGTGCAGTGTTACG+TGG 0.607226 4_2:-1786094 Msa0583270:CDS
AGACATAATTGATACCATAG+AGG 0.607702 4_2:+1783028 None:intergenic
GCAGCTGTTCATCATTGAGA+AGG 0.611613 4_2:-1787546 Msa0583270:CDS
CTTGGTCAGAGATGAGGGTG+AGG 0.611807 4_2:+1787717 None:intergenic
ACTTACCAACCCTGTCCGAA+TGG 0.612493 4_2:+1786046 None:intergenic
ACAAACAATATGATATACAA+AGG 0.628535 4_2:+1782892 None:intergenic
GTTGCTATGGACTACTGAGA+AGG 0.629470 4_2:-1787570 Msa0583270:CDS
TACCAACCCTGTCCGAATGG+TGG 0.629823 4_2:+1786049 None:intergenic
GGCACCGGTACAGTAACCAC+CGG 0.635581 4_2:-1787617 Msa0583270:CDS
GGTCAGAGATGAGGGTGAGG+AGG 0.635921 4_2:+1787720 None:intergenic
AGTGTTACGTGGAAAGAACT+GGG 0.637752 4_2:-1786083 Msa0583270:CDS
CTCGGCCATTGCATCGATCG+CGG 0.641696 4_2:+1787643 None:intergenic
AACCACCGGTGATTCCCTGT+CGG 0.657904 4_2:-1787603 Msa0583270:CDS
TGCCGACAGGGAATCACCGG+TGG 0.664133 4_2:+1787601 None:intergenic
ACAAAGAAAACACCATCAGG+AGG 0.672815 4_2:+1787440 None:intergenic
CGAGTTGCAAAGGATATCAG+GGG 0.685935 4_2:-1783157 Msa0583270:CDS
CTCATCTCTGACCAAGACCG+TGG 0.686718 4_2:-1787710 Msa0583270:CDS
CAACTCGAAGGTCATCATCG+AGG 0.731436 4_2:+1783173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATTAATTTTGATTT+TGG - chr4_2:1783361-1783380 Msa0583270:intron 10.0%
!! ATATTAATAATAAGACCAAT+TGG + chr4_2:1783722-1783741 None:intergenic 15.0%
!!! TTGCATTCTTTTTTTTTTTT+TGG + chr4_2:1784447-1784466 None:intergenic 15.0%
!! GTTATGAATCAAAATTAATT+TGG - chr4_2:1784501-1784520 Msa0583270:intron 15.0%
!! ATAATTATAGTTGAAACTTT+AGG - chr4_2:1784940-1784959 Msa0583270:intron 15.0%
!! TACAAAATTACCTTAAAATT+TGG - chr4_2:1785024-1785043 Msa0583270:intron 15.0%
!!! TGCAAAATATTAGATTTTAT+TGG - chr4_2:1786657-1786676 Msa0583270:intron 15.0%
!! TACAATTTATTAATAACCAA+AGG + chr4_2:1786728-1786747 None:intergenic 15.0%
!! TTTGGTTATTAATAAATTGT+AGG - chr4_2:1786727-1786746 Msa0583270:intron 15.0%
!! TTGGTTATTAATAAATTGTA+GGG - chr4_2:1786728-1786747 Msa0583270:intron 15.0%
!!! AATTTTGATTTTGGTTTAAC+TGG - chr4_2:1783370-1783389 Msa0583270:intron 20.0%
!! AACATTAGATATGTAATGTT+GGG + chr4_2:1783658-1783677 None:intergenic 20.0%
!! AAACATTAGATATGTAATGT+TGG + chr4_2:1783659-1783678 None:intergenic 20.0%
!! TTACATATCTAATGTTTAAG+CGG - chr4_2:1783662-1783681 Msa0583270:intron 20.0%
!! CAAAATTTATAGAACTCAAA+TGG + chr4_2:1784162-1784181 None:intergenic 20.0%
!!! CATTTGAGTTCTATAAATTT+TGG - chr4_2:1784160-1784179 Msa0583270:intron 20.0%
!! CAATTTATTGTTTATACAGA+TGG + chr4_2:1784762-1784781 None:intergenic 20.0%
!! AAATAGTGCTTATAAAGTTT+GGG + chr4_2:1785098-1785117 None:intergenic 20.0%
!! TAAATAGTGCTTATAAAGTT+TGG + chr4_2:1785099-1785118 None:intergenic 20.0%
!! ATTAAGGTAGGAAAAAATAT+AGG - chr4_2:1785242-1785261 Msa0583270:intron 20.0%
!!! CTCACAAATTTTTCTTAAAA+GGG + chr4_2:1785372-1785391 None:intergenic 20.0%
!!! TTGGAAATAATTTTTCAGAA+CGG - chr4_2:1785847-1785866 Msa0583270:intron 20.0%
!! TTACAATAATATACTTGAAG+AGG - chr4_2:1787124-1787143 Msa0583270:intron 20.0%
!! ACAAACAATATGATATACAA+AGG + chr4_2:1787796-1787815 None:intergenic 20.0%
! AATTCATACATTAGGTGTTT+AGG - chr4_2:1783595-1783614 Msa0583270:intron 25.0%
! ACATTAGATATGTAATGTTG+GGG + chr4_2:1783657-1783676 None:intergenic 25.0%
! GTATAAATGAACTTTGTCAA+AGG + chr4_2:1784090-1784109 None:intergenic 25.0%
! TTGACAAAGTTCATTTATAC+AGG - chr4_2:1784090-1784109 Msa0583270:intron 25.0%
! TGACAAAGTTCATTTATACA+GGG - chr4_2:1784091-1784110 Msa0583270:intron 25.0%
! TTGATACCTATTGAAATTAC+GGG + chr4_2:1784271-1784290 None:intergenic 25.0%
! CTTGATACCTATTGAAATTA+CGG + chr4_2:1784272-1784291 None:intergenic 25.0%
! TACCTGTGAAAACTAATATT+TGG - chr4_2:1784558-1784577 Msa0583270:intron 25.0%
!! TAGGTCTAATCCAAATTTTA+AGG + chr4_2:1785037-1785056 None:intergenic 25.0%
!! CCTCACAAATTTTTCTTAAA+AGG + chr4_2:1785373-1785392 None:intergenic 25.0%
!!! CCTTTTAAGAAAAATTTGTG+AGG - chr4_2:1785370-1785389 Msa0583270:intron 25.0%
! TCTCATGGTAATAATACTTT+GGG - chr4_2:1785413-1785432 Msa0583270:intron 25.0%
! AATGACAGATTACATTATGT+CGG - chr4_2:1785437-1785456 Msa0583270:intron 25.0%
! CAAAAATGACTAAAATACGT+TGG + chr4_2:1785830-1785849 None:intergenic 25.0%
!!! CAACGTATTTTAGTCATTTT+TGG - chr4_2:1785828-1785847 Msa0583270:intron 25.0%
!!! AAATAATTTTTCAGAACGGA+AGG - chr4_2:1785851-1785870 Msa0583270:intron 25.0%
!!! AATAATTTTTCAGAACGGAA+GGG - chr4_2:1785852-1785871 Msa0583270:intron 25.0%
!!! ATTTGGTGATGAAACAAATA+TGG - chr4_2:1786329-1786348 Msa0583270:intron 25.0%
!!! TAGATTTTATTGGTTTTAGC+CGG - chr4_2:1786667-1786686 Msa0583270:intron 25.0%
!!! CTCTTATTTATCTTTTCCTT+TGG - chr4_2:1786709-1786728 Msa0583270:intron 25.0%
!! TTTTGACAAAGATTACTTTG+AGG + chr4_2:1786813-1786832 None:intergenic 25.0%
! ATAGAGAAACATCTTTATTG+AGG + chr4_2:1787161-1787180 None:intergenic 25.0%
! ATTTATGATCGTAAAACTAC+TGG + chr4_2:1787322-1787341 None:intergenic 25.0%
!! CATTTTGCTAAAAACAATCA+AGG + chr4_2:1787398-1787417 None:intergenic 25.0%
! CATTAAAGAAGACAAACAAA+TGG + chr4_2:1787618-1787637 None:intergenic 25.0%
GTTACGAGAATTCATACATT+AGG - chr4_2:1783587-1783606 Msa0583270:intron 30.0%
TTTCTGATGAACTTGAACAT+TGG - chr4_2:1783943-1783962 Msa0583270:intron 30.0%
ATAACAATGTCAAGCTTGAA+GGG + chr4_2:1784018-1784037 None:intergenic 30.0%
TATAACAATGTCAAGCTTGA+AGG + chr4_2:1784019-1784038 None:intergenic 30.0%
TGATACCTATTGAAATTACG+GGG + chr4_2:1784270-1784289 None:intergenic 30.0%
CGTAATTTCAATAGGTATCA+AGG - chr4_2:1784270-1784289 Msa0583270:intron 30.0%
!!! GACCAAATATTAGTTTTCAC+AGG + chr4_2:1784563-1784582 None:intergenic 30.0%
AGTATTATTACCATGAGACT+CGG + chr4_2:1785411-1785430 None:intergenic 30.0%
GTCTCATGGTAATAATACTT+TGG - chr4_2:1785412-1785431 Msa0583270:intron 30.0%
CTCATGGTAATAATACTTTG+GGG - chr4_2:1785414-1785433 Msa0583270:intron 30.0%
GAGTTTCTTAATCCATATAC+TGG - chr4_2:1785478-1785497 Msa0583270:intron 30.0%
!!! TATCAAGTTTTTTCACCTGA+GGG - chr4_2:1785560-1785579 Msa0583270:intron 30.0%
AATCTATGTCGATATCTTCT+CGG + chr4_2:1785625-1785644 None:intergenic 30.0%
GATATCGACATAGATTTCAT+AGG - chr4_2:1785629-1785648 Msa0583270:intron 30.0%
GTTCAGAACAACAAAATACT+TGG - chr4_2:1785969-1785988 Msa0583270:intron 30.0%
AGAACAACAAAATACTTGGA+CGG - chr4_2:1785973-1785992 Msa0583270:intron 30.0%
TAAACCATCCAAAATTCAAG+TGG - chr4_2:1786215-1786234 Msa0583270:intron 30.0%
AAACCATCCAAAATTCAAGT+GGG - chr4_2:1786216-1786235 Msa0583270:intron 30.0%
GGAAATAATACAAGTGGAAA+AGG + chr4_2:1786764-1786783 None:intergenic 30.0%
AAGGATGGAAATAATACAAG+TGG + chr4_2:1786770-1786789 None:intergenic 30.0%
!! TTACTTTGAGGTGTATAAGA+TGG + chr4_2:1786801-1786820 None:intergenic 30.0%
ATGCTACTACAAATGATGAA+AGG + chr4_2:1787033-1787052 None:intergenic 30.0%
TTCCTCTATGTGCTATAAAT+TGG + chr4_2:1787092-1787111 None:intergenic 30.0%
!! TGATCTTTACTGATAATGGT+TGG + chr4_2:1787188-1787207 None:intergenic 30.0%
! GCATTGATCTTTACTGATAA+TGG + chr4_2:1787192-1787211 None:intergenic 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr4_2:1787246-1787265 None:intergenic 30.0%
!! GATCATAAATCTTAGCTTTG+TGG - chr4_2:1787332-1787351 Msa0583270:intron 30.0%
GGTGTAGAAAAAGGTAAAAT+GGG + chr4_2:1787377-1787396 None:intergenic 30.0%
AGGTGTAGAAAAAGGTAAAA+TGG + chr4_2:1787378-1787397 None:intergenic 30.0%
AACAATCAAGGTGTAGAAAA+AGG + chr4_2:1787386-1787405 None:intergenic 30.0%
!!! TAGTTGCATCTTGTTTTTGT+AGG - chr4_2:1787475-1787494 Msa0583270:CDS 30.0%
AGACATAATTGATACCATAG+AGG + chr4_2:1787660-1787679 None:intergenic 30.0%
! ATCTAATCTGTATTTTGCAC+TGG + chr4_2:1787852-1787871 None:intergenic 30.0%
!!! TTGTGTGAGTTTTTAGTGTG+TGG + chr4_2:1782807-1782826 None:intergenic 35.0%
! GGTGATTGAGTTTAGTTTCA+TGG + chr4_2:1782840-1782859 None:intergenic 35.0%
! TAAAGCTGGAGATGTTTTAC+AGG - chr4_2:1783178-1783197 Msa0583270:CDS 35.0%
!! GTTATTACTTTTCCTCCTGA+TGG - chr4_2:1783233-1783252 Msa0583270:intron 35.0%
!! CTGATGGTGTTTTCTTTGTT+CGG - chr4_2:1783249-1783268 Msa0583270:intron 35.0%
GTCGAATATTGAAGTTGCTT+CGG - chr4_2:1783271-1783290 Msa0583270:intron 35.0%
! TCAACATTGCTTGTTGAGTT+AGG - chr4_2:1783505-1783524 Msa0583270:intron 35.0%
!! GTGTTTAGGTGTTGAGAAAT+GGG - chr4_2:1783609-1783628 Msa0583270:intron 35.0%
!! TGTTTAGGTGTTGAGAAATG+GGG - chr4_2:1783610-1783629 Msa0583270:intron 35.0%
AAAACCTACCTAGAGATTCA+AGG + chr4_2:1783857-1783876 None:intergenic 35.0%
TAACAATGTCAAGCTTGAAG+GGG + chr4_2:1784017-1784036 None:intergenic 35.0%
ACCACTCATGTCTTAAAACA+TGG - chr4_2:1784057-1784076 Msa0583270:intron 35.0%
CCACTCATGTCTTAAAACAT+GGG - chr4_2:1784058-1784077 Msa0583270:intron 35.0%
! ATTTATACAGGGCATTAGAG+AGG - chr4_2:1784102-1784121 Msa0583270:intron 35.0%
! TTTATACAGGGCATTAGAGA+GGG - chr4_2:1784103-1784122 Msa0583270:intron 35.0%
! ATTAGAGAGGGATGTCTTTT+AGG - chr4_2:1784115-1784134 Msa0583270:intron 35.0%
GGATTAAACTATCAACCACT+TGG + chr4_2:1784303-1784322 None:intergenic 35.0%
CCAACTGAGCTATATTTACT+GGG + chr4_2:1784324-1784343 None:intergenic 35.0%
ACCAACTGAGCTATATTTAC+TGG + chr4_2:1784325-1784344 None:intergenic 35.0%
! ACGTGTCACTGTGTAAAATT+TGG - chr4_2:1784471-1784490 Msa0583270:intron 35.0%
CTGTGTAAAATTTGGTAGAC+TGG - chr4_2:1784479-1784498 Msa0583270:intron 35.0%
AAGTGGAGCAATTATGATAG+TGG - chr4_2:1784906-1784925 Msa0583270:intron 35.0%
TCTTAAAAGCCAGTGTTGTA+AGG + chr4_2:1785066-1785085 None:intergenic 35.0%
TTCCACATTGTCTAGAGATT+TGG + chr4_2:1785124-1785143 None:intergenic 35.0%
CTAGGAGCAGATTACAATTA+AGG - chr4_2:1785226-1785245 Msa0583270:intron 35.0%
GAGCAGATTACAATTAAGGT+AGG - chr4_2:1785230-1785249 Msa0583270:intron 35.0%
TAAATCCGAAAGAGATCTCT+TGG - chr4_2:1785292-1785311 Msa0583270:intron 35.0%
TGAACTCCATTGAAGAAGAA+TGG - chr4_2:1785338-1785357 Msa0583270:intron 35.0%
TTGTTGCCATTCTTCTTCAA+TGG + chr4_2:1785347-1785366 None:intergenic 35.0%
AAAATTTGTGAGGATCTGCA+TGG - chr4_2:1785380-1785399 Msa0583270:intron 35.0%
AAATTTGTGAGGATCTGCAT+GGG - chr4_2:1785381-1785400 Msa0583270:intron 35.0%
GTATTATTACCATGAGACTC+GGG + chr4_2:1785410-1785429 None:intergenic 35.0%
! TCTTAATCCATATACTGGCT+AGG - chr4_2:1785483-1785502 Msa0583270:intron 35.0%
TTATATGCCTAGCCAGTATA+TGG + chr4_2:1785493-1785512 None:intergenic 35.0%
!!! GTATCAAGTTTTTTCACCTG+AGG - chr4_2:1785559-1785578 Msa0583270:intron 35.0%
! ATGTCATTTGAAGTAGGCAA+CGG + chr4_2:1785602-1785621 None:intergenic 35.0%
GAAGTCTGCCTAAATCAAAA+GGG - chr4_2:1785651-1785670 Msa0583270:intron 35.0%
!!! GCATCAAACCCTTTTGATTT+AGG + chr4_2:1785662-1785681 None:intergenic 35.0%
!! AAAAGGGTTTGATGCCATTT+TGG - chr4_2:1785667-1785686 Msa0583270:intron 35.0%
!! GTTAATCGGTTTGGCAAATA+CGG - chr4_2:1785701-1785720 Msa0583270:intron 35.0%
!! TTAATCGGTTTGGCAAATAC+GGG - chr4_2:1785702-1785721 Msa0583270:intron 35.0%
GATGAATACACCTTATCATC+CGG - chr4_2:1785886-1785905 Msa0583270:intron 35.0%
! GAACTTTGGAAACTTACTTG+AGG - chr4_2:1785939-1785958 Msa0583270:intron 35.0%
!! TTGGACGGTTTTATACCATT+GGG - chr4_2:1785988-1786007 Msa0583270:intron 35.0%
TATACCATTGGGATGAACAA+TGG - chr4_2:1785999-1786018 Msa0583270:intron 35.0%
! CTCTAGCCATATTTGTTTCT+AGG - chr4_2:1786075-1786094 Msa0583270:CDS 35.0%
GGCTTTCCTAGAAACAAATA+TGG + chr4_2:1786084-1786103 None:intergenic 35.0%
TTGTTTGAAAGCTTCATCTC+TGG + chr4_2:1786138-1786157 None:intergenic 35.0%
CAAAATTCAAGTGGGTGATT+GGG - chr4_2:1786224-1786243 Msa0583270:intron 35.0%
! AAATTCCTAGCTGTCAGTTT+TGG + chr4_2:1786313-1786332 None:intergenic 35.0%
AAAACTGACAGCTAGGAATT+TGG - chr4_2:1786312-1786331 Msa0583270:intron 35.0%
TTTAGGAAGATGCAGTTGAA+AGG + chr4_2:1786362-1786381 None:intergenic 35.0%
AGTTGTATACGTGCTTCTTT+AGG + chr4_2:1786379-1786398 None:intergenic 35.0%
AGGAGAAGGTTGAATTAGAA+GGG - chr4_2:1786532-1786551 Msa0583270:intron 35.0%
GTTGTTCGAATTTCTGTCTT+AGG - chr4_2:1786561-1786580 Msa0583270:intron 35.0%
AACTTGACAGAATCCTCTAA+TGG - chr4_2:1786981-1787000 Msa0583270:intron 35.0%
ACTACAAATGATGAAAGGAG+TGG + chr4_2:1787028-1787047 None:intergenic 35.0%
GACCAATTTATAGCACATAG+AGG - chr4_2:1787087-1787106 Msa0583270:intron 35.0%
ATCAGTAAAGATCAATGCAC+CGG - chr4_2:1787194-1787213 Msa0583270:intron 35.0%
AACATGAAATGTAGCTATGG+GGG + chr4_2:1787299-1787318 None:intergenic 35.0%
GAACATGAAATGTAGCTATG+GGG + chr4_2:1787300-1787319 None:intergenic 35.0%
GGAACATGAAATGTAGCTAT+GGG + chr4_2:1787301-1787320 None:intergenic 35.0%
TGGAACATGAAATGTAGCTA+TGG + chr4_2:1787302-1787321 None:intergenic 35.0%
CTCTCATTCTTTCCAGTTAT+AGG + chr4_2:1787580-1787599 None:intergenic 35.0%
CTATAACTGGAAAGAATGAG+AGG - chr4_2:1787578-1787597 Msa0583270:CDS 35.0%
!! CTTTGCACTTAACTAGTCTT+TGG - chr4_2:1787678-1787697 Msa0583270:CDS 35.0%
! GTTGAAAGAGTACAAGATTC+AGG + chr4_2:1787898-1787917 None:intergenic 35.0%
!!! GAGTTTTTAGTGTGTGGAGA+GGG + chr4_2:1782801-1782820 None:intergenic 40.0%
!!! TGAGTTTTTAGTGTGTGGAG+AGG + chr4_2:1782802-1782821 None:intergenic 40.0%
!!! TCTTTTGTTGGTGGTTTGAG+AGG + chr4_2:1782928-1782947 None:intergenic 40.0%
ACAAAGAAAACACCATCAGG+AGG + chr4_2:1783248-1783267 None:intergenic 40.0%
CGAACAAAGAAAACACCATC+AGG + chr4_2:1783251-1783270 None:intergenic 40.0%
TTGTGTGTATGAGTTTCAGG+TGG + chr4_2:1783435-1783454 None:intergenic 40.0%
!! GGTGTTTAGGTGTTGAGAAA+TGG - chr4_2:1783608-1783627 Msa0583270:intron 40.0%
! TAATGTTTAAGCGGTGTCAG+TGG - chr4_2:1783671-1783690 Msa0583270:intron 40.0%
! TTTTCTGACGTACTCAAGCT+TGG - chr4_2:1783899-1783918 Msa0583270:intron 40.0%
AACAATGTCAAGCTTGAAGG+GGG + chr4_2:1784016-1784035 None:intergenic 40.0%
!!! CCCATGTTTTAAGACATGAG+TGG + chr4_2:1784061-1784080 None:intergenic 40.0%
!! ATGTCTGCACTGATTAAGAG+TGG + chr4_2:1784208-1784227 None:intergenic 40.0%
CTATTGAAATTACGGGGTTC+AGG + chr4_2:1784264-1784283 None:intergenic 40.0%
CTGAACCCCGTAATTTCAAT+AGG - chr4_2:1784262-1784281 Msa0583270:intron 40.0%
TATCAAGGTTTCTGACCAAG+TGG - chr4_2:1784285-1784304 Msa0583270:intron 40.0%
CCCAGTAAATATAGCTCAGT+TGG - chr4_2:1784321-1784340 Msa0583270:intron 40.0%
CACTATAAGTGTGGAGAAGT+GGG + chr4_2:1784397-1784416 None:intergenic 40.0%
ACACTATAAGTGTGGAGAAG+TGG + chr4_2:1784398-1784417 None:intergenic 40.0%
AGACTCACACACTATAAGTG+TGG + chr4_2:1784406-1784425 None:intergenic 40.0%
AGTGTTACGTGGAAAGAACT+GGG - chr4_2:1784602-1784621 Msa0583270:intron 40.0%
GAAATACCATTGCCACCATT+CGG - chr4_2:1784624-1784643 Msa0583270:intron 40.0%
GGAATGTGAAGCAAACAACT+AGG + chr4_2:1784741-1784760 None:intergenic 40.0%
! ACTTTTCCAACCAAAACCAC+AGG + chr4_2:1784890-1784909 None:intergenic 40.0%
!!! TGTGGTTTTGGTTGGAAAAG+TGG - chr4_2:1784889-1784908 Msa0583270:intron 40.0%
!!! CAACACTGGCTTTTAAGAGT+AGG - chr4_2:1785068-1785087 Msa0583270:intron 40.0%
GACCAAATCTCTAGACAATG+TGG - chr4_2:1785119-1785138 Msa0583270:intron 40.0%
CATTCGTGTTGGGTTTGAAT+GGG + chr4_2:1785156-1785175 None:intergenic 40.0%
TCATTCGTGTTGGGTTTGAA+TGG + chr4_2:1785157-1785176 None:intergenic 40.0%
TTCAAACCCAACACGAATGA+AGG - chr4_2:1785157-1785176 Msa0583270:intron 40.0%
GCAACCCAAATGCCAAAATT+AGG - chr4_2:1785200-1785219 Msa0583270:intron 40.0%
!! GCTGCCTAATTTTGGCATTT+GGG + chr4_2:1785207-1785226 None:intergenic 40.0%
!! AGCTGCCTAATTTTGGCATT+TGG + chr4_2:1785208-1785227 None:intergenic 40.0%
AATGCCAAAATTAGGCAGCT+AGG - chr4_2:1785208-1785227 Msa0583270:intron 40.0%
GAAACTCACGCAGTAACTTA+AGG + chr4_2:1785465-1785484 None:intergenic 40.0%
ACTTACTCCTCTTGCAAGTA+TGG + chr4_2:1785541-1785560 None:intergenic 40.0%
TGAACTTGAAAAAGTCCCTC+AGG + chr4_2:1785578-1785597 None:intergenic 40.0%
! TCTCGGATGTCATTTGAAGT+AGG + chr4_2:1785608-1785627 None:intergenic 40.0%
GGAAGTCTGCCTAAATCAAA+AGG - chr4_2:1785650-1785669 Msa0583270:intron 40.0%
!!! GTTTGATGCCATTTTGGTGT+TGG - chr4_2:1785673-1785692 Msa0583270:intron 40.0%
! ATCTTGCTGAATAAAGGTGC+TGG + chr4_2:1785742-1785761 None:intergenic 40.0%
CTGTGGATCTTGCTGAATAA+AGG + chr4_2:1785748-1785767 None:intergenic 40.0%
AGTTGAAATGTTCGCCAAGA+AGG - chr4_2:1785766-1785785 Msa0583270:intron 40.0%
CTTATCATCCGGAGTATGAT+GGG - chr4_2:1785897-1785916 Msa0583270:intron 40.0%
!! TGAGGTTCTGAACAGAACTT+TGG - chr4_2:1785925-1785944 Msa0583270:intron 40.0%
!! CTTGGACGGTTTTATACCAT+TGG - chr4_2:1785987-1786006 Msa0583270:intron 40.0%
! GATGAACAATGGTGGAACAT+CGG - chr4_2:1786010-1786029 Msa0583270:intron 40.0%
!! ATCAAGCTTGCTAATCGTCT+CGG - chr4_2:1786192-1786211 Msa0583270:intron 40.0%
! TCACCCACTTGAATTTTGGA+TGG + chr4_2:1786222-1786241 None:intergenic 40.0%
! CCAATCACCCACTTGAATTT+TGG + chr4_2:1786226-1786245 None:intergenic 40.0%
CCAAAATTCAAGTGGGTGAT+TGG - chr4_2:1786223-1786242 Msa0583270:intron 40.0%
!!! AGTTTTGGATGCAACCTGAT+AGG + chr4_2:1786298-1786317 None:intergenic 40.0%
GAGGAGAAGGTTGAATTAGA+AGG - chr4_2:1786531-1786550 Msa0583270:intron 40.0%
AGAAGGTTGAATTAGAAGGG+CGG - chr4_2:1786535-1786554 Msa0583270:intron 40.0%
! AGACTTCCATCCTTGTTTGA+AGG - chr4_2:1786628-1786647 Msa0583270:intron 40.0%
! GACTTCCATCCTTGTTTGAA+GGG - chr4_2:1786629-1786648 Msa0583270:intron 40.0%
AAAGACCCTTCAAACAAGGA+TGG + chr4_2:1786637-1786656 None:intergenic 40.0%
TGCAAAAGACCCTTCAAACA+AGG + chr4_2:1786641-1786660 None:intergenic 40.0%
TGTTCATCTGATGAGAGGAA+CGG + chr4_2:1786904-1786923 None:intergenic 40.0%
AGCAATGTTCATCTGATGAG+AGG + chr4_2:1786909-1786928 None:intergenic 40.0%
TGAACATTGCTCCAGTAACT+TGG - chr4_2:1786918-1786937 Msa0583270:intron 40.0%
GTTGGAAATGACCAAGTTAC+TGG + chr4_2:1786932-1786951 None:intergenic 40.0%
!!! AGTTTTCGATGGTGGAGTTT+CGG + chr4_2:1786965-1786984 None:intergenic 40.0%
! TTCTGTCAAGTTTTCGATGG+TGG + chr4_2:1786973-1786992 None:intergenic 40.0%
! GGATTCTGTCAAGTTTTCGA+TGG + chr4_2:1786976-1786995 None:intergenic 40.0%
GAAGAAGTTCACACCATTAG+AGG + chr4_2:1786997-1787016 None:intergenic 40.0%
ATGGTGTGAACTTCTTCCAA+CGG - chr4_2:1787000-1787019 Msa0583270:intron 40.0%
TCAGTAAAGATCAATGCACC+GGG - chr4_2:1787195-1787214 Msa0583270:intron 40.0%
TGATATCCTTTGCAACTCGA+AGG + chr4_2:1787527-1787546 None:intergenic 40.0%
!! TTCGAGTTGCAAAGGATATC+AGG - chr4_2:1787526-1787545 Msa0583270:CDS 40.0%
! TCGAGTTGCAAAGGATATCA+GGG - chr4_2:1787527-1787546 Msa0583270:CDS 40.0%
CTTTCCAGTTATAGGAAGCT+CGG + chr4_2:1787572-1787591 None:intergenic 40.0%
TTTCTACTCAACTGCCTCTA+TGG - chr4_2:1787643-1787662 Msa0583270:CDS 40.0%
!! GAATGGGTTGGGGAAGAAAA+GGG + chr4_2:1782904-1782923 None:intergenic 45.0%
!! TGAATGGGTTGGGGAAGAAA+AGG + chr4_2:1782905-1782924 None:intergenic 45.0%
!! TTTGAGAGGTGAATGGGTTG+GGG + chr4_2:1782914-1782933 None:intergenic 45.0%
! GTTTGAGAGGTGAATGGGTT+GGG + chr4_2:1782915-1782934 None:intergenic 45.0%
TGGTGGTTTGAGAGGTGAAT+GGG + chr4_2:1782920-1782939 None:intergenic 45.0%
! TTGGTGGTTTGAGAGGTGAA+TGG + chr4_2:1782921-1782940 None:intergenic 45.0%
!!! CTTGGCGGTTAGTCTTTTGT+TGG + chr4_2:1782940-1782959 None:intergenic 45.0%
! GTTGCTATGGACTACTGAGA+AGG - chr4_2:1783115-1783134 Msa0583270:CDS 45.0%
GCAGCTGTTCATCATTGAGA+AGG - chr4_2:1783139-1783158 Msa0583270:CDS 45.0%
CTGTTCATCATTGAGAAGGC+TGG - chr4_2:1783143-1783162 Msa0583270:CDS 45.0%
!! ATTGAGAAGGCTGGCTTGTT+TGG - chr4_2:1783152-1783171 Msa0583270:CDS 45.0%
! GGCTTGTTTGGAACTAAAGC+TGG - chr4_2:1783164-1783183 Msa0583270:CDS 45.0%
CGCTTGTGTGTATGAGTTTC+AGG + chr4_2:1783438-1783457 None:intergenic 45.0%
AGTGGATGGAGTTGTACTCA+TGG - chr4_2:1783689-1783708 Msa0583270:intron 45.0%
GTGGATGGAGTTGTACTCAT+GGG - chr4_2:1783690-1783709 Msa0583270:intron 45.0%
TGGATGGAGTTGTACTCATG+GGG - chr4_2:1783691-1783710 Msa0583270:intron 45.0%
ACTCATGGGGCAATTCCAAT+TGG - chr4_2:1783704-1783723 Msa0583270:intron 45.0%
CCTACCTAGAGATTCAAGGT+TGG + chr4_2:1783853-1783872 None:intergenic 45.0%
CCAACCTTGAATCTCTAGGT+AGG - chr4_2:1783850-1783869 Msa0583270:intron 45.0%
GCTAAGGGTTAAGGAGTTAG+AGG + chr4_2:1783970-1783989 None:intergenic 45.0%
ACAATGTCAAGCTTGAAGGG+GGG + chr4_2:1784015-1784034 None:intergenic 45.0%
TCCATGGACATTGGAATGCA+GGG - chr4_2:1784348-1784367 Msa0583270:intron 45.0%
GAAATCCAGGGTTCAAACCT+CGG + chr4_2:1784375-1784394 None:intergenic 45.0%
!! TTTTTGGCCAAATAGCCCAG+TGG + chr4_2:1784431-1784450 None:intergenic 45.0%
TTTACGAGTGCAGTGTTACG+TGG - chr4_2:1784591-1784610 Msa0583270:intron 45.0%
CAGTGTTACGTGGAAAGAAC+TGG - chr4_2:1784601-1784620 Msa0583270:intron 45.0%
AACCAAAACCACAGGTGTGT+GGG + chr4_2:1784882-1784901 None:intergenic 45.0%
GAGTCAAGCTCGTTGTTAAG+AGG - chr4_2:1784986-1785005 Msa0583270:intron 45.0%
! CAGTGTTGTAAGGCTGCTTT+AGG + chr4_2:1785056-1785075 None:intergenic 45.0%
CTAAAGCAGCCTTACAACAC+TGG - chr4_2:1785054-1785073 Msa0583270:intron 45.0%
CTAGCACCTTCATTCGTGTT+GGG + chr4_2:1785166-1785185 None:intergenic 45.0%
TCTAGCACCTTCATTCGTGT+TGG + chr4_2:1785167-1785186 None:intergenic 45.0%
!! AACACGAATGAAGGTGCTAG+AGG - chr4_2:1785166-1785185 Msa0583270:intron 45.0%
! TGCTCCTAGCTGCCTAATTT+TGG + chr4_2:1785215-1785234 None:intergenic 45.0%
TCCGAAAGAGATCTCTTGGT+AGG - chr4_2:1785296-1785315 Msa0583270:intron 45.0%
GCCTACCAAGAGATCTCTTT+CGG + chr4_2:1785300-1785319 None:intergenic 45.0%
CATCATGCCATACTTGCAAG+AGG - chr4_2:1785531-1785550 Msa0583270:intron 45.0%
!!! TGATGCCATTTTGGTGTTGG+TGG - chr4_2:1785676-1785695 Msa0583270:intron 45.0%
AACCACCACCAACACCAAAA+TGG + chr4_2:1785684-1785703 None:intergenic 45.0%
!! TGGTGTTGGTGGTGGTTAAT+CGG - chr4_2:1785687-1785706 Msa0583270:intron 45.0%
!! TTGGTGGTGGTTAATCGGTT+TGG - chr4_2:1785692-1785711 Msa0583270:intron 45.0%
CTTGGCGAACATTTCAACTG+TGG + chr4_2:1785765-1785784 None:intergenic 45.0%
TGAAATGTTCGCCAAGAAGG+CGG - chr4_2:1785769-1785788 Msa0583270:intron 45.0%
ATACATCCGTAGTGAGTGAC+AGG - chr4_2:1785801-1785820 Msa0583270:intron 45.0%
TACATCCGTAGTGAGTGACA+GGG - chr4_2:1785802-1785821 Msa0583270:intron 45.0%
!! TTTTTCAGAACGGAAGGGAC+AGG - chr4_2:1785857-1785876 Msa0583270:intron 45.0%
! TTTTCAGAACGGAAGGGACA+GGG - chr4_2:1785858-1785877 Msa0583270:intron 45.0%
CCATCATACTCCGGATGATA+AGG + chr4_2:1785899-1785918 None:intergenic 45.0%
CCTTATCATCCGGAGTATGA+TGG - chr4_2:1785896-1785915 Msa0583270:intron 45.0%
TCAGCTTTCCCATCATACTC+CGG + chr4_2:1785908-1785927 None:intergenic 45.0%
ACCATTGGGATGAACAATGG+TGG - chr4_2:1786002-1786021 Msa0583270:intron 45.0%
TCCACCATTGTTCATCCCAA+TGG + chr4_2:1786006-1786025 None:intergenic 45.0%
TGGTGGAACATCGGTAATCA+AGG - chr4_2:1786019-1786038 Msa0583270:intron 45.0%
GGTGGAACATCGGTAATCAA+GGG - chr4_2:1786020-1786039 Msa0583270:intron 45.0%
GTGGAACATCGGTAATCAAG+GGG - chr4_2:1786021-1786040 Msa0583270:intron 45.0%
! TTCTAGGAAAGCCTTTGTCG+AGG - chr4_2:1786091-1786110 Msa0583270:CDS 45.0%
CTGCCTGTTAGGATGAATGA+GGG + chr4_2:1786266-1786285 None:intergenic 45.0%
TGCATCCAAAACTGACAGCT+AGG - chr4_2:1786305-1786324 Msa0583270:intron 45.0%
GACGTTTAGGAACTGAAGTC+TGG + chr4_2:1786505-1786524 None:intergenic 45.0%
GTTCCTAAACGTCAAGTTCG+AGG - chr4_2:1786512-1786531 Msa0583270:intron 45.0%
TCTCCTCGAACTTGACGTTT+AGG + chr4_2:1786518-1786537 None:intergenic 45.0%
AAACGTCAAGTTCGAGGAGA+AGG - chr4_2:1786518-1786537 Msa0583270:intron 45.0%
GAAGGTTGAATTAGAAGGGC+GGG - chr4_2:1786536-1786555 Msa0583270:intron 45.0%
AAGGTTGAATTAGAAGGGCG+GGG - chr4_2:1786537-1786556 Msa0583270:intron 45.0%
!!! TTGGTTTTAGCCGGTGCAAA+AGG - chr4_2:1786676-1786695 Msa0583270:intron 45.0%
! AGAATGCTCTCCTTTTGCAC+CGG + chr4_2:1786689-1786708 None:intergenic 45.0%
GTATAAGATGGCAGCAAGCA+AGG + chr4_2:1786789-1786808 None:intergenic 45.0%
! GGAGTAGGGCGTAGTATTTT+GGG + chr4_2:1786851-1786870 None:intergenic 45.0%
! TGGAGTAGGGCGTAGTATTT+TGG + chr4_2:1786852-1786871 None:intergenic 45.0%
AATACTACGCCCTACTCCAT+TGG - chr4_2:1786853-1786872 Msa0583270:intron 45.0%
AATTGGTCCTACCTGTCTGT+CGG + chr4_2:1787075-1787094 None:intergenic 45.0%
ATGTCTGAACAATGCTGCGT+TGG - chr4_2:1787415-1787434 Msa0583270:CDS 45.0%
!! TGATGACCTTCGAGTTGCAA+AGG - chr4_2:1787518-1787537 Msa0583270:CDS 45.0%
CGAGTTGCAAAGGATATCAG+GGG - chr4_2:1787528-1787547 Msa0583270:CDS 45.0%
!!! TTAAATTAAATTTGTTTTTT+CGG - chr4_2:1783408-1783427 Msa0583270:intron 5.0%
!!! AAAATTTTATTTAATGATTT+AGG - chr4_2:1784689-1784708 Msa0583270:intron 5.0%
!! ATTTGATAAAAAAAAAAAAA+GGG + chr4_2:1787254-1787273 None:intergenic 5.0%
!! AATTTGATAAAAAAAAAAAA+AGG + chr4_2:1787255-1787274 None:intergenic 5.0%
GAAGAAAAGGGAAGTGGTGG+TGG + chr4_2:1782892-1782911 None:intergenic 50.0%
GTTGGGGAAGAAAAGGGAAG+TGG + chr4_2:1782898-1782917 None:intergenic 50.0%
GGTTTGAGAGGTGAATGGGT+TGG + chr4_2:1782916-1782935 None:intergenic 50.0%
!!! GGCGGTTAGTCTTTTGTTGG+TGG + chr4_2:1782937-1782956 None:intergenic 50.0%
ACGGTCTTGGTCAGAGATGA+GGG + chr4_2:1782976-1782995 None:intergenic 50.0%
! ACGATCGATGCTAGCTTGGT+GGG + chr4_2:1783020-1783039 None:intergenic 50.0%
! AACGATCGATGCTAGCTTGG+TGG + chr4_2:1783021-1783040 None:intergenic 50.0%
GGTAACGATCGATGCTAGCT+TGG + chr4_2:1783024-1783043 None:intergenic 50.0%
ATCACCGGTGGTTACTGTAC+CGG + chr4_2:1783075-1783094 None:intergenic 50.0%
TACACACAAGCGCGTTATCC+TGG - chr4_2:1783446-1783465 Msa0583270:intron 50.0%
ACACACAAGCGCGTTATCCT+GGG - chr4_2:1783447-1783466 Msa0583270:intron 50.0%
GTTGAGAAATGGGGAACTGC+CGG - chr4_2:1783619-1783638 Msa0583270:intron 50.0%
GTTGGGGTACAAGTTCGAAC+CGG + chr4_2:1783641-1783660 None:intergenic 50.0%
! GTTTAAGCGGTGTCAGTGGA+TGG - chr4_2:1783675-1783694 Msa0583270:intron 50.0%
GCGACCAACCTTGAATCTCT+AGG - chr4_2:1783846-1783865 Msa0583270:intron 50.0%
CTGGTCTGAGCTAAGGGTTA+AGG + chr4_2:1783979-1783998 None:intergenic 50.0%
! GCTCAACTGGTCTGAGCTAA+GGG + chr4_2:1783985-1784004 None:intergenic 50.0%
! AGCTCAACTGGTCTGAGCTA+AGG + chr4_2:1783986-1784005 None:intergenic 50.0%
!! TAGCTCAGTTGGTAGCTCCA+TGG - chr4_2:1784332-1784351 Msa0583270:intron 50.0%
!! GTTGGTAGCTCCATGGACAT+TGG - chr4_2:1784339-1784358 Msa0583270:intron 50.0%
CTCCATGGACATTGGAATGC+AGG - chr4_2:1784347-1784366 Msa0583270:intron 50.0%
CCATGGACATTGGAATGCAG+GGG - chr4_2:1784349-1784368 Msa0583270:intron 50.0%
GTGGAGAAGTGGGAAATCCA+GGG + chr4_2:1784387-1784406 None:intergenic 50.0%
TGTGGAGAAGTGGGAAATCC+AGG + chr4_2:1784388-1784407 None:intergenic 50.0%
TAGTGTGTGAGTCTAGCCAC+TGG - chr4_2:1784412-1784431 Msa0583270:intron 50.0%
AGTGTGTGAGTCTAGCCACT+GGG - chr4_2:1784413-1784432 Msa0583270:intron 50.0%
AGTCTAGCCACTGGGCTATT+TGG - chr4_2:1784421-1784440 Msa0583270:intron 50.0%
ACTTACCAACCCTGTCCGAA+TGG + chr4_2:1784642-1784661 None:intergenic 50.0%
AATGATCTCCCACACACCTG+TGG - chr4_2:1784871-1784890 Msa0583270:intron 50.0%
CAACCAAAACCACAGGTGTG+TGG + chr4_2:1784883-1784902 None:intergenic 50.0%
!!! CACACACCTGTGGTTTTGGT+TGG - chr4_2:1784881-1784900 Msa0583270:intron 50.0%
GGTGCTAGAGGATACACTGA+AGG - chr4_2:1785178-1785197 Msa0583270:intron 50.0%
TTCACATCCTGCCATGCTTG+TGG + chr4_2:1785322-1785341 None:intergenic 50.0%
!!! TGCCATTTTGGTGTTGGTGG+TGG - chr4_2:1785679-1785698 Msa0583270:intron 50.0%
TGGTTCCCTGTCACTCACTA+CGG + chr4_2:1785810-1785829 None:intergenic 50.0%
! GGAGTATGATGGGAAAGCTG+AGG - chr4_2:1785907-1785926 Msa0583270:intron 50.0%
! TTGTGCTACTGCCTCGACAA+AGG + chr4_2:1786105-1786124 None:intergenic 50.0%
CCTGTTAGGATGAATGAGGG+AGG + chr4_2:1786263-1786282 None:intergenic 50.0%
CCTCCCTCATTCATCCTAAC+AGG - chr4_2:1786260-1786279 Msa0583270:intron 50.0%
CCTGCCTGTTAGGATGAATG+AGG + chr4_2:1786267-1786286 None:intergenic 50.0%
CCTCATTCATCCTAACAGGC+AGG - chr4_2:1786264-1786283 Msa0583270:intron 50.0%
GGCTTAGATACCTGCCTGTT+AGG + chr4_2:1786277-1786296 None:intergenic 50.0%
GGCAGGTATCTAAGCCTATC+AGG - chr4_2:1786281-1786300 Msa0583270:intron 50.0%
GTTGGCAGAACAGCTTCTAC+TGG + chr4_2:1786470-1786489 None:intergenic 50.0%
TGTTCTGCCAACTGAGCTTC+AGG - chr4_2:1786478-1786497 Msa0583270:intron 50.0%
AAGATGGCAGCAAGCAAGGA+TGG + chr4_2:1786785-1786804 None:intergenic 50.0%
!! GTAGGGCGTAGTATTTTGGG+AGG + chr4_2:1786848-1786867 None:intergenic 50.0%
GAGGCACAACCAATGGAGTA+GGG + chr4_2:1786865-1786884 None:intergenic 50.0%
AGGAACGGAGCAAAAGTGGT+CGG + chr4_2:1786889-1786908 None:intergenic 50.0%
TGAGAGGAACGGAGCAAAAG+TGG + chr4_2:1786893-1786912 None:intergenic 50.0%
AGTTTCGGTTGCTTGGCTGT+TGG + chr4_2:1786950-1786969 None:intergenic 50.0%
! ATGGTGGAGTTTCGGTTGCT+TGG + chr4_2:1786957-1786976 None:intergenic 50.0%
GATGAAAGGAGTGGATCCGT+TGG + chr4_2:1787019-1787038 None:intergenic 50.0%
ATTGGTCCTACCTGTCTGTC+GGG + chr4_2:1787074-1787093 None:intergenic 50.0%
AATGTAGCTATGGGGGAGAG+TGG + chr4_2:1787292-1787311 None:intergenic 50.0%
CAACTCGAAGGTCATCATCG+AGG + chr4_2:1787515-1787534 None:intergenic 50.0%
TCGACCGAGCTTCCTATAAC+TGG - chr4_2:1787565-1787584 Msa0583270:CDS 50.0%
!! ATGGGAATGTGTGGTGGTGG+TGG + chr4_2:1782861-1782880 None:intergenic 55.0%
ACCACCACCACACATTCCCA+TGG - chr4_2:1782860-1782879 Msa0583270:three_prime_UTR 55.0%
!! GAAAAGGGAAGTGGTGGTGG+TGG + chr4_2:1782889-1782908 None:intergenic 55.0%
GGGGAAGAAAAGGGAAGTGG+TGG + chr4_2:1782895-1782914 None:intergenic 55.0%
GGTGAGGAGGTTCTTCTTGG+CGG + chr4_2:1782955-1782974 None:intergenic 55.0%
GAGGGTGAGGAGGTTCTTCT+TGG + chr4_2:1782958-1782977 None:intergenic 55.0%
CTTGGTCAGAGATGAGGGTG+AGG + chr4_2:1782971-1782990 None:intergenic 55.0%
CACGGTCTTGGTCAGAGATG+AGG + chr4_2:1782977-1782996 None:intergenic 55.0%
CTCATCTCTGACCAAGACCG+TGG - chr4_2:1782975-1782994 Msa0583270:three_prime_UTR 55.0%
TGTGTTGGGTCTTGAGGCCA+CGG + chr4_2:1782995-1783014 None:intergenic 55.0%
! TAGCTTGGTGGGGCTGTGTT+GGG + chr4_2:1783009-1783028 None:intergenic 55.0%
! CGATCGATGCTAGCTTGGTG+GGG + chr4_2:1783019-1783038 None:intergenic 55.0%
CGTTACCGCGATCGATGCAA+TGG - chr4_2:1783037-1783056 Msa0583270:three_prime_UTR 55.0%
ATCGATGCAATGGCCGAGCT+TGG - chr4_2:1783047-1783066 Msa0583270:three_prime_UTR 55.0%
! TACTGTACCGGTGCCAAGCT+CGG + chr4_2:1783063-1783082 None:intergenic 55.0%
AACCACCGGTGATTCCCTGT+CGG - chr4_2:1783082-1783101 Msa0583270:three_prime_UTR 55.0%
AGTTGCCGACAGGGAATCAC+CGG + chr4_2:1783090-1783109 None:intergenic 55.0%
GTGATTCCCTGTCGGCAACT+TGG - chr4_2:1783090-1783109 Msa0583270:three_prime_UTR 55.0%
ATTCCCTGTCGGCAACTTGG+CGG - chr4_2:1783093-1783112 Msa0583270:exon 55.0%
CGTTATCCTGGGTTCGAGCT+CGG - chr4_2:1783458-1783477 Msa0583270:intron 55.0%
GTTATCCTGGGTTCGAGCTC+GGG - chr4_2:1783459-1783478 Msa0583270:intron 55.0%
GTCAAGCTTGAAGGGGGGAT+GGG + chr4_2:1784010-1784029 None:intergenic 55.0%
TGTCAAGCTTGAAGGGGGGA+TGG + chr4_2:1784011-1784030 None:intergenic 55.0%
CCCCTGCATTCCAATGTCCA+TGG + chr4_2:1784352-1784371 None:intergenic 55.0%
ACCATTGCCACCATTCGGAC+AGG - chr4_2:1784629-1784648 Msa0583270:intron 55.0%
CCATTGCCACCATTCGGACA+GGG - chr4_2:1784630-1784649 Msa0583270:intron 55.0%
TACCAACCCTGTCCGAATGG+TGG + chr4_2:1784639-1784658 None:intergenic 55.0%
! CTCCCACACACCTGTGGTTT+TGG - chr4_2:1784877-1784896 Msa0583270:intron 55.0%
CTCTTGGTAGGCCACAAGCA+TGG - chr4_2:1785308-1785327 Msa0583270:intron 55.0%
CATGGGAAACCCGAGTCTCA+TGG - chr4_2:1785398-1785417 Msa0583270:intron 55.0%
ATGCAGCTTGACCGCCTTCT+TGG + chr4_2:1785783-1785802 None:intergenic 55.0%
GTCTGGTCCTGAAGCTCAGT+TGG + chr4_2:1786488-1786507 None:intergenic 55.0%
! GGAGGCACAACCAATGGAGT+AGG + chr4_2:1786866-1786885 None:intergenic 55.0%
GAACGGAGCAAAAGTGGTCG+GGG + chr4_2:1786887-1786906 None:intergenic 55.0%
GGAACGGAGCAAAAGTGGTC+GGG + chr4_2:1786888-1786907 None:intergenic 55.0%
TCCAGTAGAACCCGACAGAC+AGG - chr4_2:1787061-1787080 Msa0583270:intron 55.0%
ACCTGTCTGTCGGGTTCTAC+TGG + chr4_2:1787065-1787084 None:intergenic 55.0%
GTAGAACCCGACAGACAGGT+AGG - chr4_2:1787065-1787084 Msa0583270:intron 55.0%
AATGCACCGGGTTGCGTATG+CGG - chr4_2:1787207-1787226 Msa0583270:intron 55.0%
TATGGGGGAGAGTGGCAAAG+GGG + chr4_2:1787284-1787303 None:intergenic 55.0%
CTATGGGGGAGAGTGGCAAA+GGG + chr4_2:1787285-1787304 None:intergenic 55.0%
GTGTGGAGAGGGAGTGAGCT+TGG + chr4_2:1782790-1782809 None:intergenic 60.0%
GCCATGGGAATGTGTGGTGG+TGG + chr4_2:1782864-1782883 None:intergenic 60.0%
GTGGCCATGGGAATGTGTGG+TGG + chr4_2:1782867-1782886 None:intergenic 60.0%
GTGGTGGCCATGGGAATGTG+TGG + chr4_2:1782870-1782889 None:intergenic 60.0%
!! AAGGGAAGTGGTGGTGGTGG+TGG + chr4_2:1782886-1782905 None:intergenic 60.0%
GGTCAGAGATGAGGGTGAGG+AGG + chr4_2:1782968-1782987 None:intergenic 60.0%
TGGGGCTGTGTTGGGTCTTG+AGG + chr4_2:1783001-1783020 None:intergenic 60.0%
! CTAGCTTGGTGGGGCTGTGT+TGG + chr4_2:1783010-1783029 None:intergenic 60.0%
! CTCGGCCATTGCATCGATCG+CGG + chr4_2:1783045-1783064 None:intergenic 60.0%
!! GGCACCGGTACAGTAACCAC+CGG - chr4_2:1783068-1783087 Msa0583270:three_prime_UTR 60.0%
CAACCGCCAAGTTGCCGACA+GGG + chr4_2:1783099-1783118 None:intergenic 60.0%
CGGCAACTTGGCGGTTGCTA+TGG - chr4_2:1783102-1783121 Msa0583270:exon 60.0%
!! CGAGCTCGGGTGAAGGCATT+CGG - chr4_2:1783472-1783491 Msa0583270:intron 60.0%
ACATTGGAATGCAGGGGCCG+AGG - chr4_2:1784355-1784374 Msa0583270:intron 60.0%
CCCTGTCCGAATGGTGGCAA+TGG + chr4_2:1784633-1784652 None:intergenic 60.0%
TGCCACCATTCGGACAGGGT+TGG - chr4_2:1784634-1784653 Msa0583270:intron 60.0%
TGGTAGGCCACAAGCATGGC+AGG - chr4_2:1785312-1785331 Msa0583270:intron 60.0%
ATGCACCGGGTTGCGTATGC+GGG - chr4_2:1787208-1787227 Msa0583270:intron 60.0%
AAGCTCCCGCATACGCAACC+CGG + chr4_2:1787216-1787235 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr4_2:1787224-1787243 Msa0583270:intron 60.0%
GCTATGGGGGAGAGTGGCAA+AGG + chr4_2:1787286-1787305 None:intergenic 60.0%
!! GTGGTGGTGGTGGTGGCCAT+GGG + chr4_2:1782879-1782898 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGCCA+TGG + chr4_2:1782880-1782899 None:intergenic 65.0%
GGGTCTTGAGGCCACGGTCT+TGG + chr4_2:1782989-1783008 None:intergenic 65.0%
GCAATGGCCGAGCTTGGCAC+CGG - chr4_2:1783053-1783072 Msa0583270:three_prime_UTR 65.0%
TGCCGACAGGGAATCACCGG+TGG + chr4_2:1783087-1783106 None:intergenic 65.0%
GCAACCGCCAAGTTGCCGAC+AGG + chr4_2:1783100-1783119 None:intergenic 65.0%
CTTCACCCGAGCTCGAACCC+AGG + chr4_2:1783467-1783486 None:intergenic 65.0%
CTGGGTTCGAGCTCGGGTGA+AGG - chr4_2:1783465-1783484 Msa0583270:intron 65.0%
GGGGGGATGGGTAGCTCAAC+TGG + chr4_2:1783998-1784017 None:intergenic 65.0%
AGGGGCCGAGGTTTGAACCC+TGG - chr4_2:1784367-1784386 Msa0583270:intron 65.0%
! GGTCGGGGAGGCACAACCAA+TGG + chr4_2:1786872-1786891 None:intergenic 65.0%
CGGAGCAAAAGTGGTCGGGG+AGG + chr4_2:1786884-1786903 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr4_2:1787225-1787244 Msa0583270:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1782777 1787930 1782777 ID=Msa0583270;Name=Msa0583270
chr4_2 mRNA 1782777 1787930 1782777 ID=Msa0583270-mRNA-1;Parent=Msa0583270;Name=Msa0583270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=102|1|1|1|0.5|0.66|3|334|199
chr4_2 exon 1782777 1783210 1782777 ID=Msa0583270-mRNA-1:exon:456;Parent=Msa0583270-mRNA-1
chr4_2 exon 1786052 1786117 1786052 ID=Msa0583270-mRNA-1:exon:455;Parent=Msa0583270-mRNA-1
chr4_2 exon 1787395 1787930 1787395 ID=Msa0583270-mRNA-1:exon:454;Parent=Msa0583270-mRNA-1
chr4_2 five_prime_UTR 1787829 1787930 1787829 ID=Msa0583270-mRNA-1:five_prime_utr;Parent=Msa0583270-mRNA-1
chr4_2 CDS 1787395 1787828 1787395 ID=Msa0583270-mRNA-1:cds;Parent=Msa0583270-mRNA-1
chr4_2 CDS 1786052 1786117 1786052 ID=Msa0583270-mRNA-1:cds;Parent=Msa0583270-mRNA-1
chr4_2 CDS 1783111 1783210 1783111 ID=Msa0583270-mRNA-1:cds;Parent=Msa0583270-mRNA-1
chr4_2 three_prime_UTR 1782777 1783110 1782777 ID=Msa0583270-mRNA-1:three_prime_utr;Parent=Msa0583270-mRNA-1
Gene Sequence

>Msa0583270

ATGGCCACCACCACCACCACTTCCCTTTTCTTCCCCAACCCATTCACCTCTCAAACCACCAACAAAAGACTAACCGCCAAGAAGAACCTCCTCACCCTCATCTCTGACCAAGACCGTGGCCTCAAGACCCAACACAGCCCCACCAAGCTAGCATCGATCGTTACCGCGATCGATGCAATGGCCGAGCTTGGCACCGGTACAGTAACCACCGGTGATTCCCTGTCGGCAACTTGGCGGTTGCTATGGACTACTGAGAAGGAGCAGCTGTTCATCATTGAGAAGGCTGGCTTGTTTGGAACTAAAGCTGGAGATGTTTTACAGGTCATTGACGTTAAGAATTTGATTCTTAACAATGTTATTACTTTTCCTCCTGATGGTGTTTTCTTTGTTCGGTCGAATATTGAAGTTGCTTCGGAGCAGAGAGTGAACTTCAAATTTACGAGTGCAGTGTTACGTGGAAAGAACTGGGAAATACCATTGCCACCATTCGGACAGGGTTGGTTTGATACTGTATACCTCGATGATGACCTTCGAGTTGCAAAGGATATCAGGGGAGACTATTTAGTTGTCGACCGAGCTTCCTATAACTGGAAAGAATGA

Protein sequence

>Msa0583270

MATTTTTSLFFPNPFTSQTTNKRLTAKKNLLTLISDQDRGLKTQHSPTKLASIVTAIDAMAELGTGTVTTGDSLSATWRLLWTTEKEQLFIIEKAGLFGTKAGDVLQVIDVKNLILNNVITFPPDGVFFVRSNIEVASEQRVNFKFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDDLRVAKDIRGDYLVVDRASYNWKE*