Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432390 | KEH25690.1 | 90.254 | 236 | 13 | 3 | 2 | 227 | 1 | 236 | 3.56e-133 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432390 | sp|O67550|EX53_AQUAE | 32.558 | 129 | 75 | 3 | 94 | 222 | 53 | 169 | 1.85e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432390 | A0A072UIQ4 | 90.254 | 236 | 13 | 3 | 2 | 227 | 1 | 236 | 1.70e-133 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1432390 | 0.815684 | 8.147651e-52 | -8.615850e-47 |
| Msa0017120 | Msa1432390 | 0.801430 | 9.038664e-49 | -8.615850e-47 |
| Msa0020630 | Msa1432390 | 0.804519 | 2.077515e-49 | -8.615850e-47 |
| Msa0027540 | Msa1432390 | 0.805804 | 1.118289e-49 | -8.615850e-47 |
| Msa0030380 | Msa1432390 | 0.808059 | 3.729489e-50 | -8.615850e-47 |
| Msa0037820 | Msa1432390 | 0.842408 | 2.633018e-58 | -8.615850e-47 |
| Msa0044710 | Msa1432390 | 0.825369 | 4.866623e-54 | -8.615850e-47 |
| Msa0047470 | Msa1432390 | 0.820405 | 6.980922e-53 | -8.615850e-47 |
| Msa0050720 | Msa1432390 | 0.823613 | 1.260584e-53 | -8.615850e-47 |
| Msa0050770 | Msa1432390 | 0.808727 | 2.686830e-50 | -8.615850e-47 |
| Msa0068410 | Msa1432390 | 0.808589 | 2.875689e-50 | -8.615850e-47 |
| Msa0075310 | Msa1432390 | 0.801790 | 7.625723e-49 | -8.615850e-47 |
| Msa0079250 | Msa1432390 | 0.816617 | 5.041919e-52 | -8.615850e-47 |
| Msa0083160 | Msa1432390 | 0.803441 | 3.481038e-49 | -8.615850e-47 |
| Msa0084680 | Msa1432390 | 0.836637 | 8.327783e-57 | -8.615850e-47 |
| Msa0087110 | Msa1432390 | 0.811570 | 6.555050e-51 | -8.615850e-47 |
| Msa0100250 | Msa1432390 | 0.816596 | 5.098316e-52 | -8.615850e-47 |
| Msa0114250 | Msa1432390 | 0.818428 | 1.970853e-52 | -8.615850e-47 |
| Msa1352290 | Msa1432390 | 0.812008 | 5.263136e-51 | -8.615850e-47 |
| Msa1375340 | Msa1432390 | 0.818258 | 2.153155e-52 | -8.615850e-47 |
| Msa1380720 | Msa1432390 | 0.819487 | 1.131815e-52 | -8.615850e-47 |
| Msa1381130 | Msa1432390 | 0.828167 | 1.044904e-54 | -8.615850e-47 |
| Msa1412080 | Msa1432390 | 0.819890 | 9.159038e-53 | -8.615850e-47 |
| Msa1418200 | Msa1432390 | 0.805461 | 1.320446e-49 | -8.615850e-47 |
| Msa1421870 | Msa1432390 | 0.812317 | 4.504653e-51 | -8.615850e-47 |
| Msa1427830 | Msa1432390 | 0.829036 | 6.443801e-55 | -8.615850e-47 |
| Msa1431730 | Msa1432390 | 0.846450 | 2.155425e-59 | -8.615850e-47 |
| Msa1432390 | Msa1432640 | 0.832802 | 7.680486e-56 | -8.615850e-47 |
| Msa1432390 | Msa1440180 | 0.808107 | 3.644017e-50 | -8.615850e-47 |
| Msa1432390 | Msa1440610 | 0.823824 | 1.124797e-53 | -8.615850e-47 |
| Msa1432390 | Msa1449740 | 0.811026 | 8.600236e-51 | -8.615850e-47 |
| Msa1432390 | Msa1454110 | 0.837682 | 4.501608e-57 | -8.615850e-47 |
| Msa1432390 | Msa1458920 | 0.802257 | 6.112650e-49 | -8.615850e-47 |
| Msa0605620 | Msa1432390 | 0.810079 | 1.377454e-50 | -8.615850e-47 |
| Msa0617830 | Msa1432390 | 0.819479 | 1.136637e-52 | -8.615850e-47 |
| Msa0656680 | Msa1432390 | 0.810611 | 1.057673e-50 | -8.615850e-47 |
| Msa0669850 | Msa1432390 | 0.802929 | 4.442351e-49 | -8.615850e-47 |
| Msa0686610 | Msa1432390 | 0.804968 | 1.674641e-49 | -8.615850e-47 |
| Msa0720270 | Msa1432390 | 0.807123 | 5.895598e-50 | -8.615850e-47 |
| Msa0724050 | Msa1432390 | 0.821497 | 3.913678e-53 | -8.615850e-47 |
| Msa0750380 | Msa1432390 | 0.821508 | 3.890157e-53 | -8.615850e-47 |
| Msa0763880 | Msa1432390 | 0.817266 | 3.604922e-52 | -8.615850e-47 |
| Msa0763910 | Msa1432390 | 0.808981 | 2.370484e-50 | -8.615850e-47 |
| Msa0787720 | Msa1432390 | 0.807624 | 4.614593e-50 | -8.615850e-47 |
| Msa0812660 | Msa1432390 | 0.813292 | 2.755120e-51 | -8.615850e-47 |
| Msa0828570 | Msa1432390 | 0.828259 | 9.931803e-55 | -8.615850e-47 |
| Msa0830720 | Msa1432390 | 0.833496 | 5.157107e-56 | -8.615850e-47 |
| Msa0126900 | Msa1432390 | 0.801648 | 8.152358e-49 | -8.615850e-47 |
| Msa0130800 | Msa1432390 | 0.813447 | 2.548551e-51 | -8.615850e-47 |
| Msa0155610 | Msa1432390 | 0.811724 | 6.067385e-51 | -8.615850e-47 |
| Msa0159750 | Msa1432390 | 0.801355 | 9.364541e-49 | -8.615850e-47 |
| Msa0168100 | Msa1432390 | 0.808440 | 3.093416e-50 | -8.615850e-47 |
| Msa0171920 | Msa1432390 | 0.810494 | 1.121159e-50 | -8.615850e-47 |
| Msa0173740 | Msa1432390 | 0.801291 | 9.648669e-49 | -8.615850e-47 |
| Msa0173820 | Msa1432390 | 0.808735 | 2.676049e-50 | -8.615850e-47 |
| Msa0173830 | Msa1432390 | 0.817235 | 3.664187e-52 | -8.615850e-47 |
| Msa0182930 | Msa1432390 | 0.846214 | 2.500446e-59 | -8.615850e-47 |
| Msa0185390 | Msa1432390 | 0.826678 | 2.377412e-54 | -8.615850e-47 |
| Msa0223290 | Msa1432390 | 0.808542 | 2.943063e-50 | -8.615850e-47 |
| Msa1299160 | Msa1432390 | 0.807074 | 6.037223e-50 | -8.615850e-47 |
| Msa1306580 | Msa1432390 | 0.804576 | 2.021304e-49 | -8.615850e-47 |
| Msa1317030 | Msa1432390 | 0.814873 | 1.234102e-51 | -8.615850e-47 |
| Msa1337090 | Msa1432390 | 0.810632 | 1.046872e-50 | -8.615850e-47 |
| Msa0377280 | Msa1432390 | 0.824550 | 7.595519e-54 | -8.615850e-47 |
| Msa0387790 | Msa1432390 | 0.809318 | 2.007425e-50 | -8.615850e-47 |
| Msa0404690 | Msa1432390 | 0.809640 | 1.712264e-50 | -8.615850e-47 |
| Msa0418430 | Msa1432390 | 0.808892 | 2.477614e-50 | -8.615850e-47 |
| Msa0421800 | Msa1432390 | 0.813714 | 2.225878e-51 | -8.615850e-47 |
| Msa0425050 | Msa1432390 | 0.803542 | 3.316371e-49 | -8.615850e-47 |
| Msa0448080 | Msa1432390 | 0.830135 | 3.482098e-55 | -8.615850e-47 |
| Msa0448120 | Msa1432390 | 0.800158 | 1.643636e-48 | -8.615850e-47 |
| Msa0462590 | Msa1432390 | 0.816344 | 5.803977e-52 | -8.615850e-47 |
| Msa0465800 | Msa1432390 | 0.812848 | 3.448648e-51 | -8.615850e-47 |
| Msa0472740 | Msa1432390 | 0.807128 | 5.879936e-50 | -8.615850e-47 |
| Msa0482680 | Msa1432390 | 0.843431 | 1.407039e-58 | -8.615850e-47 |
| Msa1038320 | Msa1432390 | 0.813918 | 2.006652e-51 | -8.615850e-47 |
| Msa1043870 | Msa1432390 | 0.826494 | 2.631316e-54 | -8.615850e-47 |
| Msa1058010 | Msa1432390 | 0.824067 | 9.866115e-54 | -8.615850e-47 |
| Msa1080840 | Msa1432390 | 0.801935 | 7.120904e-49 | -8.615850e-47 |
| Msa1097380 | Msa1432390 | 0.813465 | 2.524817e-51 | -8.615850e-47 |
| Msa1102540 | Msa1432390 | 0.818860 | 1.572205e-52 | -8.615850e-47 |
| Msa0265580 | Msa1432390 | 0.810986 | 8.774880e-51 | -8.615850e-47 |
| Msa0284780 | Msa1432390 | 0.841711 | 4.027137e-58 | -8.615850e-47 |
| Msa0288240 | Msa1432390 | 0.807348 | 5.282141e-50 | -8.615850e-47 |
| Msa0288330 | Msa1432390 | 0.810342 | 1.209243e-50 | -8.615850e-47 |
| Msa0318070 | Msa1432390 | 0.805625 | 1.219668e-49 | -8.615850e-47 |
| Msa0326670 | Msa1432390 | 0.805099 | 1.571928e-49 | -8.615850e-47 |
| Msa0333900 | Msa1432390 | 0.804075 | 2.570277e-49 | -8.615850e-47 |
| Msa0334020 | Msa1432390 | 0.810781 | 9.716093e-51 | -8.615850e-47 |
| Msa0336270 | Msa1432390 | 0.801099 | 1.056374e-48 | -8.615850e-47 |
| Msa1118980 | Msa1432390 | 0.804382 | 2.219222e-49 | -8.615850e-47 |
| Msa1144700 | Msa1432390 | 0.804740 | 1.868359e-49 | -8.615850e-47 |
| Msa1171340 | Msa1432390 | 0.801556 | 8.515508e-49 | -8.615850e-47 |
| Msa1177240 | Msa1432390 | 0.827416 | 1.583503e-54 | -8.615850e-47 |
| Msa1198450 | Msa1432390 | 0.812316 | 4.506880e-51 | -8.615850e-47 |
| Msa1210640 | Msa1432390 | 0.801729 | 7.846743e-49 | -8.615850e-47 |
| Msa1210770 | Msa1432390 | 0.822635 | 2.131559e-53 | -8.615850e-47 |
| Msa0485280 | Msa1432390 | 0.801719 | 7.886536e-49 | -8.615850e-47 |
| Msa0512310 | Msa1432390 | 0.801495 | 8.764568e-49 | -8.615850e-47 |
| Msa0514260 | Msa1432390 | 0.810005 | 1.428900e-50 | -8.615850e-47 |
| Msa0535030 | Msa1432390 | 0.809908 | 1.499511e-50 | -8.615850e-47 |
| Msa0535060 | Msa1432390 | 0.807680 | 4.490644e-50 | -8.615850e-47 |
| Msa0576600 | Msa1432390 | 0.806679 | 7.318097e-50 | -8.615850e-47 |
| Msa0577230 | Msa1432390 | 0.828281 | 9.811013e-55 | -8.615850e-47 |
| Msa0583740 | Msa1432390 | 0.830016 | 3.724136e-55 | -8.615850e-47 |
| Msa0847200 | Msa1432390 | 0.821924 | 3.117123e-53 | -8.615850e-47 |
| Msa0851740 | Msa1432390 | 0.803000 | 4.294773e-49 | -8.615850e-47 |
| Msa0861040 | Msa1432390 | -0.811141 | 8.119592e-51 | -8.615850e-47 |
| Msa0863770 | Msa1432390 | 0.800556 | 1.363269e-48 | -8.615850e-47 |
| Msa0874760 | Msa1432390 | 0.816958 | 4.227679e-52 | -8.615850e-47 |
| Msa0880220 | Msa1432390 | 0.815914 | 7.241364e-52 | -8.615850e-47 |
| Msa0907700 | Msa1432390 | 0.816356 | 5.767778e-52 | -8.615850e-47 |
| Msa0925160 | Msa1432390 | 0.803075 | 4.144117e-49 | -8.615850e-47 |
| Msa0934830 | Msa1432390 | 0.812719 | 3.680557e-51 | -8.615850e-47 |
| Msa0964680 | Msa1432390 | 0.819155 | 1.347003e-52 | -8.615850e-47 |
| Msa0971860 | Msa1432390 | 0.804349 | 2.254361e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432390 | MtrunA17_Chr6g0462421 | 90.254 | 236 | 13 | 3 | 2 | 227 | 1 | 236 | 4.93e-137 | 390 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432390 | AT1G34380.1 | 60.870 | 184 | 66 | 3 | 46 | 229 | 65 | 242 | 3.08e-77 | 234 |
| Msa1432390 | AT1G34380.2 | 60.989 | 182 | 65 | 3 | 46 | 227 | 65 | 240 | 9.83e-76 | 233 |
| Msa1432390 | AT1G34380.3 | 60.989 | 182 | 65 | 3 | 46 | 227 | 65 | 240 | 9.98e-76 | 233 |
Find 43 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATCATCTTCTTCTCTA+TGG | 0.239574 | tig0027086:-58349 | None:intergenic |
| GAAGTTGCTTCCTTCTTATA+AGG | 0.292216 | tig0027086:+58686 | Msa1432390:CDS |
| AAAGAGGGAGTGAGTATAGA+AGG | 0.329465 | tig0027086:+58664 | Msa1432390:CDS |
| AGTTGCTTAAAATCCTTATC+AGG | 0.333724 | tig0027086:-60769 | None:intergenic |
| CTACAACATCATCAGCTTCA+TGG | 0.382590 | tig0027086:-60693 | None:intergenic |
| CTGAACAAGTTCTCAAGAAA+GGG | 0.400382 | tig0027086:+60725 | Msa1432390:CDS |
| AATCAAAACAACAAAGCAAA+AGG | 0.402997 | tig0027086:+58505 | Msa1432390:CDS |
| GTAATGTCTCGCAGTGTAGA+AGG | 0.412650 | tig0027086:-60845 | None:intergenic |
| TCTGAACAAGTTCTCAAGAA+AGG | 0.413733 | tig0027086:+60724 | Msa1432390:CDS |
| CTCCGATTGGCCTTATAAGA+AGG | 0.433159 | tig0027086:-58696 | None:intergenic |
| GCGAATGGTGGTGGTGGAAG+TGG | 0.449437 | tig0027086:+58729 | Msa1432390:CDS |
| GAAAATAAGCTCAATTCAAA+CGG | 0.451193 | tig0027086:+58259 | None:intergenic |
| TTTGTTCCTTCATAACATAA+AGG | 0.455799 | tig0027086:-58549 | None:intergenic |
| AACACGGTCATATTATAGAA+AGG | 0.462309 | tig0027086:-61422 | None:intergenic |
| TTAGCAAAATAGTGTAAACT+AGG | 0.467630 | tig0027086:-58573 | None:intergenic |
| GTCATATTATAGAAAGGGTT+GGG | 0.467653 | tig0027086:-61416 | None:intergenic |
| GGTGATTGCCTCTCCTGATA+AGG | 0.472031 | tig0027086:+60756 | Msa1432390:CDS |
| GTGAATCCTTTATGTTATGA+AGG | 0.476874 | tig0027086:+58543 | Msa1432390:CDS |
| ATATAGGTTATAAAAGTTGA+TGG | 0.484115 | tig0027086:+60670 | Msa1432390:intron |
| TTCCTTCTTATAAGGCCAAT+CGG | 0.498255 | tig0027086:+58694 | Msa1432390:CDS |
| GGTGGTGGAAGTGGACATGT+TGG | 0.509514 | tig0027086:+58738 | Msa1432390:CDS |
| CGGAGAAAATTCGCGGCGAA+TGG | 0.510160 | tig0027086:+58714 | Msa1432390:CDS |
| AAAATAAGCTCAATTCAAAC+GGG | 0.514667 | tig0027086:+58260 | None:intergenic |
| TAGCAAAATAGTGTAAACTA+GGG | 0.523939 | tig0027086:-58572 | None:intergenic |
| GGTCATATTATAGAAAGGGT+TGG | 0.526946 | tig0027086:-61417 | None:intergenic |
| TTCGCGGCGAATGGTGGTGG+TGG | 0.532323 | tig0027086:+58723 | Msa1432390:CDS |
| GTGGAAGTGGACATGTTGGA+AGG | 0.532401 | tig0027086:+58742 | Msa1432390:CDS |
| AAATTCGCGGCGAATGGTGG+TGG | 0.538715 | tig0027086:+58720 | Msa1432390:CDS |
| ATCAAAACAACAAAGCAAAA+GGG | 0.539615 | tig0027086:+58506 | Msa1432390:CDS |
| AAGGACCACCTTTGTAACTC+TGG | 0.547659 | tig0027086:-60826 | None:intergenic |
| ACACGGTCATATTATAGAAA+GGG | 0.548107 | tig0027086:-61421 | None:intergenic |
| CTTAAAATCCTTATCAGGAG+AGG | 0.549400 | tig0027086:-60764 | None:intergenic |
| CTAAGGCTTAGATCAGATTG+AGG | 0.554833 | tig0027086:-60889 | None:intergenic |
| AGAAAATTCGCGGCGAATGG+TGG | 0.568701 | tig0027086:+58717 | Msa1432390:CDS |
| GGCCAATCGGAGAAAATTCG+CGG | 0.568938 | tig0027086:+58707 | Msa1432390:CDS |
| TAAGGCTTAGATCAGATTGA+GGG | 0.575211 | tig0027086:-60888 | None:intergenic |
| GATGAAGGGTTGAAGTTGCA+AGG | 0.585393 | tig0027086:-58408 | None:intergenic |
| ATGAAGGGTTGAAGTTGCAA+GGG | 0.622590 | tig0027086:-58407 | None:intergenic |
| TGCCTATGCCAGAGTTACAA+AGG | 0.623345 | tig0027086:+60818 | Msa1432390:CDS |
| CACCTTTGTAACTCTGGCAT+AGG | 0.628814 | tig0027086:-60820 | None:intergenic |
| TCTCAAGAAAGGGTTTCGAG+TGG | 0.684508 | tig0027086:+60735 | Msa1432390:CDS |
| CTATGCCAGAGTTACAAAGG+TGG | 0.722875 | tig0027086:+60821 | Msa1432390:CDS |
| TTGACTAGTAAACTAAAACA+CGG | 0.741827 | tig0027086:-61438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATATATTATATAGTAA+TGG | - | tig0027086:60997-61016 | None:intergenic | 10.0% |
| !! | ATATAATATATATTGAAAAC+TGG | + | tig0027086:61002-61021 | Msa1432390:intron | 10.0% |
| !!! | ACTTTTTATCTAATTTATAT+CGG | + | tig0027086:61359-61378 | Msa1432390:intron | 10.0% |
| !!! | AATCTTTGTTTTATAGATTT+TGG | - | tig0027086:58287-58306 | None:intergenic | 15.0% |
| !!! | TTAAAATTGTGATTTTGTAT+AGG | + | tig0027086:58956-58975 | Msa1432390:intron | 15.0% |
| !!! | ATTTTAAGTGAATGAAATTT+TGG | - | tig0027086:60418-60437 | None:intergenic | 15.0% |
| !! | TTGGCATAAATATAAATTAA+TGG | - | tig0027086:60965-60984 | None:intergenic | 15.0% |
| !! | GATAAATTTATAGAAGAAAA+TGG | + | tig0027086:61134-61153 | Msa1432390:intron | 15.0% |
| !!! | TGTTTTTGAAATTTTCTTGA+AGG | - | tig0027086:58460-58479 | None:intergenic | 20.0% |
| !!! | CTTTTAGTGTCTAAAAAAAA+TGG | + | tig0027086:59620-59639 | Msa1432390:intron | 20.0% |
| !! | ATTGAATTCTGTGATTTAAA+AGG | + | tig0027086:59742-59761 | Msa1432390:intron | 20.0% |
| !!! | ATGTACATTTGATTTACTTA+AGG | + | tig0027086:60135-60154 | Msa1432390:intron | 20.0% |
| !!! | TGTACATTTGATTTACTTAA+GGG | + | tig0027086:60136-60155 | Msa1432390:intron | 20.0% |
| !! | TATAAATGATTAACTAGTTC+TGG | + | tig0027086:60552-60571 | Msa1432390:intron | 20.0% |
| !! | ATGACTAAATGAAATCATAT+AGG | + | tig0027086:60654-60673 | Msa1432390:intron | 20.0% |
| !! | ATATAGGTTATAAAAGTTGA+TGG | + | tig0027086:60670-60689 | Msa1432390:intron | 20.0% |
| !! | AGCTTGAGAAATTAATAAAT+TGG | - | tig0027086:61040-61059 | None:intergenic | 20.0% |
| !! | TAAAAAGTTAAAGAAGAGAA+TGG | - | tig0027086:61347-61366 | None:intergenic | 20.0% |
| ! | AATCAAAACAACAAAGCAAA+AGG | + | tig0027086:58505-58524 | Msa1432390:CDS | 25.0% |
| ! | ATCAAAACAACAAAGCAAAA+GGG | + | tig0027086:58506-58525 | Msa1432390:CDS | 25.0% |
| ! | TTTGTTCCTTCATAACATAA+AGG | - | tig0027086:58552-58571 | None:intergenic | 25.0% |
| ! | TAGCAAAATAGTGTAAACTA+GGG | - | tig0027086:58575-58594 | None:intergenic | 25.0% |
| ! | TTAGCAAAATAGTGTAAACT+AGG | - | tig0027086:58576-58595 | None:intergenic | 25.0% |
| !! | GTTTACACTATTTTGCTAAA+TGG | + | tig0027086:58577-58596 | Msa1432390:CDS | 25.0% |
| ! | TAACAATGATAATAACTCAC+AGG | - | tig0027086:58810-58829 | None:intergenic | 25.0% |
| ! | TCAAAATTTGAATGCATGTT+TGG | + | tig0027086:58896-58915 | Msa1432390:intron | 25.0% |
| ! | CAAAATTTGAATGCATGTTT+GGG | + | tig0027086:58897-58916 | Msa1432390:intron | 25.0% |
| ! | AAAATTTGAATGCATGTTTG+GGG | + | tig0027086:58898-58917 | Msa1432390:intron | 25.0% |
| ! | TTATAAGCGTTTATGATATG+AGG | + | tig0027086:59188-59207 | Msa1432390:intron | 25.0% |
| ! | TTACAATGGCTAAAAATTGT+GGG | - | tig0027086:59485-59504 | None:intergenic | 25.0% |
| ! | ATTACAATGGCTAAAAATTG+TGG | - | tig0027086:59486-59505 | None:intergenic | 25.0% |
| !!! | ACAATTTTTAGCCATTGTAA+TGG | + | tig0027086:59485-59504 | Msa1432390:intron | 25.0% |
| ! | AATCATGAATGTTTGTACAA+AGG | + | tig0027086:59511-59530 | Msa1432390:intron | 25.0% |
| ! | TAGTGTCTAAAAAAAATGGA+TGG | + | tig0027086:59624-59643 | Msa1432390:intron | 25.0% |
| !!! | AGTCAAAAATGTTAGCTTTT+GGG | - | tig0027086:59714-59733 | None:intergenic | 25.0% |
| !!! | AAGTCAAAAATGTTAGCTTT+TGG | - | tig0027086:59715-59734 | None:intergenic | 25.0% |
| !!! | TCTTAATCATGCTACTTTAT+AGG | + | tig0027086:59772-59791 | Msa1432390:intron | 25.0% |
| ! | ATTAGACTATGTCTAACTAT+AGG | + | tig0027086:60001-60020 | Msa1432390:intron | 25.0% |
| !! | TAGCTCATGAATTTCTTTTT+GGG | - | tig0027086:60068-60087 | None:intergenic | 25.0% |
| ! | TTTAGTAGTCAAATTAGAGT+TGG | - | tig0027086:60255-60274 | None:intergenic | 25.0% |
| !! | ATATGATTTTGTGTGTTGAA+TGG | + | tig0027086:60477-60496 | Msa1432390:intron | 25.0% |
| ! | ATAGGTAAATTTCGTTGTAA+TGG | + | tig0027086:60579-60598 | Msa1432390:intron | 25.0% |
| ! | CATTTAGTCATAATGAATGA+TGG | - | tig0027086:60645-60664 | None:intergenic | 25.0% |
| ! | GATATATCATATACTCACTA+AGG | - | tig0027086:60909-60928 | None:intergenic | 25.0% |
| !!! | ATAGTAATGGACATTTATGT+TGG | - | tig0027086:60984-61003 | None:intergenic | 25.0% |
| ! | ATATATTGAAAACTGGTACA+TGG | + | tig0027086:61009-61028 | Msa1432390:intron | 25.0% |
| !!! | ACAAAGATTGTTTGTTTTGC+TGG | + | tig0027086:58298-58317 | Msa1432390:five_prime_UTR | 30.0% |
| TTTCATCATCTTCTTCTCTA+TGG | - | tig0027086:58352-58371 | None:intergenic | 30.0% | |
| ! | ATGATGATGATGATGATGAA+GGG | - | tig0027086:58425-58444 | None:intergenic | 30.0% |
| GTGAATCCTTTATGTTATGA+AGG | + | tig0027086:58543-58562 | Msa1432390:CDS | 30.0% | |
| TGTAAGTTGTTTATCCAAAC+AGG | + | tig0027086:59216-59235 | Msa1432390:intron | 30.0% | |
| GTAAGTTGTTTATCCAAACA+GGG | + | tig0027086:59217-59236 | Msa1432390:intron | 30.0% | |
| TCATGATTAGACCATTACAA+TGG | - | tig0027086:59499-59518 | None:intergenic | 30.0% | |
| !!! | AAAGGATGTTTTGATGTTGT+CGG | + | tig0027086:59529-59548 | Msa1432390:intron | 30.0% |
| AAAAAAATGGATGGCAAGAT+TGG | + | tig0027086:59633-59652 | Msa1432390:intron | 30.0% | |
| !! | TTTTGGGTCAGAAATAAAAC+TGG | - | tig0027086:59698-59717 | None:intergenic | 30.0% |
| TAGAAGGCTTAAGTCATTAA+CGG | - | tig0027086:59884-59903 | None:intergenic | 30.0% | |
| ! | TACTTGAATTAGCTTATCCA+TGG | - | tig0027086:59922-59941 | None:intergenic | 30.0% |
| !! | ATTTCTTTTTGGGAAGGATT+AGG | - | tig0027086:60058-60077 | None:intergenic | 30.0% |
| !! | TCATGAATTTCTTTTTGGGA+AGG | - | tig0027086:60064-60083 | None:intergenic | 30.0% |
| ! | GTAGCTCATGAATTTCTTTT+TGG | - | tig0027086:60069-60088 | None:intergenic | 30.0% |
| ! | TTAAGGGTAGTTCTATTTCA+TGG | + | tig0027086:60152-60171 | Msa1432390:intron | 30.0% |
| ACTAAAAAATCAACACGCAA+TGG | + | tig0027086:60269-60288 | Msa1432390:intron | 30.0% | |
| ! | AACAGAAATAAAAGAAGTGC+TGG | - | tig0027086:60369-60388 | None:intergenic | 30.0% |
| !! | TTAACTAGTTCTGGAAGAAT+AGG | + | tig0027086:60561-60580 | Msa1432390:intron | 30.0% |
| AGTTGCTTAAAATCCTTATC+AGG | - | tig0027086:60772-60791 | None:intergenic | 30.0% | |
| ! | GATTATATGTAATGGGAAAG+AGG | - | tig0027086:61239-61258 | None:intergenic | 30.0% |
| GATGAGGGATTATATGTAAT+GGG | - | tig0027086:61246-61265 | None:intergenic | 30.0% | |
| AGATGAGGGATTATATGTAA+TGG | - | tig0027086:61247-61266 | None:intergenic | 30.0% | |
| GTCATATTATAGAAAGGGTT+GGG | - | tig0027086:61419-61438 | None:intergenic | 30.0% | |
| ACACGGTCATATTATAGAAA+GGG | - | tig0027086:61424-61443 | None:intergenic | 30.0% | |
| AACACGGTCATATTATAGAA+AGG | - | tig0027086:61425-61444 | None:intergenic | 30.0% | |
| !!! | TTGTTTGTTTTGCTGGAGAT+AGG | + | tig0027086:58305-58324 | Msa1432390:five_prime_UTR | 35.0% |
| ! | GATGATGATGATGATGATGA+AGG | - | tig0027086:58426-58445 | None:intergenic | 35.0% |
| CCATCAAAAACAGCTATAAC+AGG | - | tig0027086:58642-58661 | None:intergenic | 35.0% | |
| !!! | CCTGTTATAGCTGTTTTTGA+TGG | + | tig0027086:58639-58658 | Msa1432390:CDS | 35.0% |
| !!! | CTGTTTTTGATGGTGAAAGA+GGG | + | tig0027086:58649-58668 | Msa1432390:CDS | 35.0% |
| GAAGTTGCTTCCTTCTTATA+AGG | + | tig0027086:58686-58705 | Msa1432390:CDS | 35.0% | |
| TTCCTTCTTATAAGGCCAAT+CGG | + | tig0027086:58694-58713 | Msa1432390:CDS | 35.0% | |
| !!! | TCATGAGTTGTTTTTGCTTG+TGG | + | tig0027086:59054-59073 | Msa1432390:intron | 35.0% |
| ! | GCAATTTTCATAAGCTATCC+TGG | - | tig0027086:59086-59105 | None:intergenic | 35.0% |
| TAAGCGTTTATGATATGAGG+TGG | + | tig0027086:59191-59210 | Msa1432390:intron | 35.0% | |
| TGTAATACAAAGACCCTGTT+TGG | - | tig0027086:59233-59252 | None:intergenic | 35.0% | |
| ACAGGGTCTTTGTATTACAA+AGG | + | tig0027086:59234-59253 | Msa1432390:intron | 35.0% | |
| CAGGGTCTTTGTATTACAAA+GGG | + | tig0027086:59235-59254 | Msa1432390:intron | 35.0% | |
| TGTATTACAAAGGGAGTGAA+AGG | + | tig0027086:59244-59263 | Msa1432390:intron | 35.0% | |
| GAGGATGAGAATTGTGAAAT+GGG | + | tig0027086:59266-59285 | Msa1432390:intron | 35.0% | |
| TTGTAGGATATTGTGGGATT+GGG | + | tig0027086:59389-59408 | Msa1432390:intron | 35.0% | |
| TCTGTTTGTTCATACCCAAT+TGG | + | tig0027086:59574-59593 | Msa1432390:intron | 35.0% | |
| ! | TCTGAGCTTTGATACCAATT+GGG | - | tig0027086:59591-59610 | None:intergenic | 35.0% |
| ! | ATCTGAGCTTTGATACCAAT+TGG | - | tig0027086:59592-59611 | None:intergenic | 35.0% |
| GATTGGAAAAGATACGAGTT+AGG | + | tig0027086:59650-59669 | Msa1432390:intron | 35.0% | |
| TCCACGATGTATGCATTTAT+AGG | + | tig0027086:59838-59857 | Msa1432390:intron | 35.0% | |
| ACCTATAAATGCATACATCG+TGG | - | tig0027086:59842-59861 | None:intergenic | 35.0% | |
| TGTCATGGTTTGATGAATAG+AGG | - | tig0027086:59949-59968 | None:intergenic | 35.0% | |
| !! | AGCTTATGGAAAAAGTGTCA+TGG | - | tig0027086:59964-59983 | None:intergenic | 35.0% |
| GAAGCTTATCTTCATCAAGT+TGG | + | tig0027086:60176-60195 | Msa1432390:intron | 35.0% | |
| ! | CAAACTTTCCTTTTTCCTCA+TGG | + | tig0027086:60211-60230 | Msa1432390:intron | 35.0% |
| !! | TGTGTCTGAAGTTTTAACCA+TGG | + | tig0027086:60389-60408 | Msa1432390:intron | 35.0% |
| TCTGAACAAGTTCTCAAGAA+AGG | + | tig0027086:60724-60743 | Msa1432390:CDS | 35.0% | |
| CTGAACAAGTTCTCAAGAAA+GGG | + | tig0027086:60725-60744 | Msa1432390:CDS | 35.0% | |
| CTTAAAATCCTTATCAGGAG+AGG | - | tig0027086:60767-60786 | None:intergenic | 35.0% | |
| TAAGGCTTAGATCAGATTGA+GGG | - | tig0027086:60891-60910 | None:intergenic | 35.0% | |
| !! | TTCTAGTTCATTATGCAGCA+AGG | - | tig0027086:61092-61111 | None:intergenic | 35.0% |
| TGTAGTAGTCTGATAGAAAC+TGG | + | tig0027086:61112-61131 | Msa1432390:intron | 35.0% | |
| ! | ATGTAATGGGAAAGAGGAAT+TGG | - | tig0027086:61233-61252 | None:intergenic | 35.0% |
| TAGTTAGGGTTATGAGATGA+GGG | - | tig0027086:61261-61280 | None:intergenic | 35.0% | |
| TTAGTTAGGGTTATGAGATG+AGG | - | tig0027086:61262-61281 | None:intergenic | 35.0% | |
| TCTCATAACCCTAACTAACT+TGG | + | tig0027086:61264-61283 | Msa1432390:intron | 35.0% | |
| CTGTATGTATTCGAGAGATT+CGG | - | tig0027086:61297-61316 | None:intergenic | 35.0% | |
| GGTCATATTATAGAAAGGGT+TGG | - | tig0027086:61420-61439 | None:intergenic | 35.0% | |
| ATGAAGGGTTGAAGTTGCAA+GGG | - | tig0027086:58410-58429 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTGATGGTGAAAG+AGG | + | tig0027086:58648-58667 | Msa1432390:CDS | 40.0% |
| AAAGAGGGAGTGAGTATAGA+AGG | + | tig0027086:58664-58683 | Msa1432390:CDS | 40.0% | |
| ! | GGACATGTTGGAAGGTTTTA+TGG | + | tig0027086:58750-58769 | Msa1432390:CDS | 40.0% |
| TTGAATGCATGTTTGGGGAT+TGG | + | tig0027086:58903-58922 | Msa1432390:intron | 40.0% | |
| ! | TTTTGCTTGTGGAAAACTCC+AGG | + | tig0027086:59065-59084 | Msa1432390:intron | 40.0% |
| ATTACAAAGGGAGTGAAAGG+AGG | + | tig0027086:59247-59266 | Msa1432390:intron | 40.0% | |
| GGAGGATGAGAATTGTGAAA+TGG | + | tig0027086:59265-59284 | Msa1432390:intron | 40.0% | |
| TGGTGCTTGTAGGATATTGT+GGG | + | tig0027086:59383-59402 | Msa1432390:intron | 40.0% | |
| CTTGTAGGATATTGTGGGAT+TGG | + | tig0027086:59388-59407 | Msa1432390:intron | 40.0% | |
| ATATTGTGGGATTGGGTACT+GGG | + | tig0027086:59396-59415 | Msa1432390:intron | 40.0% | |
| ! | AGAGCATCTGCTACTAAGAT+GGG | - | tig0027086:59430-59449 | None:intergenic | 40.0% |
| !! | AAGAGCATCTGCTACTAAGA+TGG | - | tig0027086:59431-59450 | None:intergenic | 40.0% |
| AAAATTGTGGGAGACAAGTG+TGG | - | tig0027086:59473-59492 | None:intergenic | 40.0% | |
| GGGTATGAACAAACAGAAGT+TGG | - | tig0027086:59571-59590 | None:intergenic | 40.0% | |
| GGTATCAAAGCTCAGATCTT+TGG | + | tig0027086:59595-59614 | Msa1432390:intron | 40.0% | |
| ACTTAAGCCTTCTACTAACC+AGG | + | tig0027086:59890-59909 | Msa1432390:intron | 40.0% | |
| GTAGTAACCTGGTTAGTAGA+AGG | - | tig0027086:59900-59919 | None:intergenic | 40.0% | |
| TACTAACCAGGTTACTACCA+TGG | + | tig0027086:59902-59921 | Msa1432390:intron | 40.0% | |
| TTAGAGCTAGTTGCAGCTTA+TGG | - | tig0027086:59978-59997 | None:intergenic | 40.0% | |
| TAGACGTTCCATGAGGAAAA+AGG | - | tig0027086:60222-60241 | None:intergenic | 40.0% | |
| AGTTGAATAGACGTTCCATG+AGG | - | tig0027086:60229-60248 | None:intergenic | 40.0% | |
| ! | GAATGAAATTTTGGACGCCA+TGG | - | tig0027086:60409-60428 | None:intergenic | 40.0% |
| !! | ACTACTGATTTGGTGACAAC+TGG | - | tig0027086:60441-60460 | None:intergenic | 40.0% |
| ! | ACAAGCTGTCACTACTGATT+TGG | - | tig0027086:60451-60470 | None:intergenic | 40.0% |
| ATTCCAGAACAAAGCAAGCA+CGG | - | tig0027086:60508-60527 | None:intergenic | 40.0% | |
| CTACAACATCATCAGCTTCA+TGG | - | tig0027086:60696-60715 | None:intergenic | 40.0% | |
| CTAAGGCTTAGATCAGATTG+AGG | - | tig0027086:60892-60911 | None:intergenic | 40.0% | |
| ! | CTCAAAGTATTCGAGAAACC+CGG | + | tig0027086:61163-61182 | Msa1432390:intron | 40.0% |
| AAATTCGAGTGAGATAGCAC+CGG | - | tig0027086:61185-61204 | None:intergenic | 40.0% | |
| GTGCTCTACCAAGTTAGTTA+GGG | - | tig0027086:61275-61294 | None:intergenic | 40.0% | |
| GATGAAGGGTTGAAGTTGCA+AGG | - | tig0027086:58411-58430 | None:intergenic | 45.0% | |
| !! | CTCCGATTGGCCTTATAAGA+AGG | - | tig0027086:58699-58718 | None:intergenic | 45.0% |
| AATGCATGTTTGGGGATTGG+AGG | + | tig0027086:58906-58925 | Msa1432390:intron | 45.0% | |
| ATGTTTGGGGATTGGAGGAT+TGG | + | tig0027086:58911-58930 | Msa1432390:intron | 45.0% | |
| TGTTTGGGGATTGGAGGATT+GGG | + | tig0027086:58912-58931 | Msa1432390:intron | 45.0% | |
| ! | ATGCCCTCTATCAGAAGTGT+CGG | - | tig0027086:59303-59322 | None:intergenic | 45.0% |
| GACATCGACACATGTTGTGT+CGG | + | tig0027086:59338-59357 | Msa1432390:intron | 45.0% | |
| ACATCGACACATGTTGTGTC+GGG | + | tig0027086:59339-59358 | Msa1432390:intron | 45.0% | |
| GTGGTGCTTGTAGGATATTG+TGG | + | tig0027086:59382-59401 | Msa1432390:intron | 45.0% | |
| GATATTGTGGGATTGGGTAC+TGG | + | tig0027086:59395-59414 | Msa1432390:intron | 45.0% | |
| ! | TATTGTGGGATTGGGTACTG+GGG | + | tig0027086:59397-59416 | Msa1432390:intron | 45.0% |
| AATGCATACATCGTGGACTC+TGG | - | tig0027086:59835-59854 | None:intergenic | 45.0% | |
| GCTTATCCATGGTAGTAACC+TGG | - | tig0027086:59911-59930 | None:intergenic | 45.0% | |
| TCTCAAGAAAGGGTTTCGAG+TGG | + | tig0027086:60735-60754 | Msa1432390:CDS | 45.0% | |
| TGCCTATGCCAGAGTTACAA+AGG | + | tig0027086:60818-60837 | Msa1432390:CDS | 45.0% | |
| CACCTTTGTAACTCTGGCAT+AGG | - | tig0027086:60823-60842 | None:intergenic | 45.0% | |
| CTATGCCAGAGTTACAAAGG+TGG | + | tig0027086:60821-60840 | Msa1432390:CDS | 45.0% | |
| AAGGACCACCTTTGTAACTC+TGG | - | tig0027086:60829-60848 | None:intergenic | 45.0% | |
| GTAATGTCTCGCAGTGTAGA+AGG | - | tig0027086:60848-60867 | None:intergenic | 45.0% | |
| AATTCGAGTGAGATAGCACC+GGG | - | tig0027086:61184-61203 | None:intergenic | 45.0% | |
| TGGAGAGGTTATCTTCAACG+AGG | - | tig0027086:61213-61232 | None:intergenic | 45.0% | |
| ATGGGAAAGAGGAATTGGAG+AGG | - | tig0027086:61228-61247 | None:intergenic | 45.0% | |
| GGTGCTCTACCAAGTTAGTT+AGG | - | tig0027086:61276-61295 | None:intergenic | 45.0% | |
| !!! | TTTTTATATATTTTTTTTGT+TGG | + | tig0027086:58849-58868 | Msa1432390:intron | 5.0% |
| !!! | TTTTATATATTTTTTTTGTT+GGG | + | tig0027086:58850-58869 | Msa1432390:intron | 5.0% |
| GGCCAATCGGAGAAAATTCG+CGG | + | tig0027086:58707-58726 | Msa1432390:CDS | 50.0% | |
| AGAAAATTCGCGGCGAATGG+TGG | + | tig0027086:58717-58736 | Msa1432390:CDS | 50.0% | |
| GTGGAAGTGGACATGTTGGA+AGG | + | tig0027086:58742-58761 | Msa1432390:CDS | 50.0% | |
| GTTTGGGGATTGGAGGATTG+GGG | + | tig0027086:58913-58932 | Msa1432390:intron | 50.0% | |
| CACCCGACACTTCTGATAGA+GGG | + | tig0027086:59297-59316 | Msa1432390:intron | 50.0% | |
| !! | TGCCCTCTATCAGAAGTGTC+GGG | - | tig0027086:59302-59321 | None:intergenic | 50.0% |
| ! | ATAGAGGGCATGCCTGGTAT+CGG | + | tig0027086:59312-59331 | Msa1432390:intron | 50.0% |
| TCGGGTGTTAGTGTCTGTGA+CGG | + | tig0027086:59357-59376 | Msa1432390:intron | 50.0% | |
| !! | ATTGTGGGATTGGGTACTGG+GGG | + | tig0027086:59398-59417 | Msa1432390:intron | 50.0% |
| ! | TAGCCGTGCTTGCTTTGTTC+TGG | + | tig0027086:60502-60521 | Msa1432390:intron | 50.0% |
| GGTGATTGCCTCTCCTGATA+AGG | + | tig0027086:60756-60775 | Msa1432390:CDS | 50.0% | |
| ! | CGCCGCGAATTTTCTCCGAT+TGG | - | tig0027086:58712-58731 | None:intergenic | 55.0% |
| CGGAGAAAATTCGCGGCGAA+TGG | + | tig0027086:58714-58733 | Msa1432390:CDS | 55.0% | |
| AAATTCGCGGCGAATGGTGG+TGG | + | tig0027086:58720-58739 | Msa1432390:CDS | 55.0% | |
| !! | GGTGGTGGAAGTGGACATGT+TGG | + | tig0027086:58738-58757 | Msa1432390:CDS | 55.0% |
| GCACCCGACACTTCTGATAG+AGG | + | tig0027086:59296-59315 | Msa1432390:intron | 55.0% | |
| ! | CTTCTGATAGAGGGCATGCC+TGG | + | tig0027086:59306-59325 | Msa1432390:intron | 55.0% |
| GTCGATGTCATGCCGATACC+AGG | - | tig0027086:59327-59346 | None:intergenic | 55.0% | |
| GTTAGTGTCTGTGACGGTCG+TGG | + | tig0027086:59363-59382 | Msa1432390:intron | 55.0% | |
| !! | TTGTGGGATTGGGTACTGGG+GGG | + | tig0027086:59399-59418 | Msa1432390:intron | 55.0% |
| !! | GCGAATGGTGGTGGTGGAAG+TGG | + | tig0027086:58729-58748 | Msa1432390:CDS | 60.0% |
| GTGACGGTCGTGGTGCTTGT+AGG | + | tig0027086:59373-59392 | Msa1432390:intron | 60.0% | |
| !! | TTCGCGGCGAATGGTGGTGG+TGG | + | tig0027086:58723-58742 | Msa1432390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027086 | gene | 58272 | 61448 | 58272 | ID=Msa1432390;Name=Msa1432390 |
| tig0027086 | mRNA | 58272 | 61448 | 58272 | ID=Msa1432390-mRNA-1;Parent=Msa1432390;Name=Msa1432390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91|0.5|0.66|0.66|0.5|0.66|3|0|246 |
| tig0027086 | exon | 58272 | 58809 | 58272 | ID=Msa1432390-mRNA-1:exon:8041;Parent=Msa1432390-mRNA-1 |
| tig0027086 | exon | 60676 | 60910 | 60676 | ID=Msa1432390-mRNA-1:exon:8042;Parent=Msa1432390-mRNA-1 |
| tig0027086 | exon | 61390 | 61448 | 61390 | ID=Msa1432390-mRNA-1:exon:8043;Parent=Msa1432390-mRNA-1 |
| tig0027086 | five_prime_UTR | 58272 | 58362 | 58272 | ID=Msa1432390-mRNA-1:five_prime_utr;Parent=Msa1432390-mRNA-1 |
| tig0027086 | CDS | 58363 | 58809 | 58363 | ID=Msa1432390-mRNA-1:cds;Parent=Msa1432390-mRNA-1 |
| tig0027086 | CDS | 60676 | 60910 | 60676 | ID=Msa1432390-mRNA-1:cds;Parent=Msa1432390-mRNA-1 |
| tig0027086 | CDS | 61390 | 61448 | 61390 | ID=Msa1432390-mRNA-1:cds;Parent=Msa1432390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
