AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026490 MtrunA17_Chr7g0244961 81.298 262 5 2 1 218 1 262 2.04e-126 357
Msa1026490 MtrunA17_Chr3g0139261 35.407 209 97 2 34 204 7 215 5.99e-33 118
Msa1026490 MtrunA17_Chr1g0147511 33.953 215 104 2 34 210 7 221 2.61e-32 117
Msa1026490 MtrunA17_Chr1g0188581 37.107 159 95 1 51 204 59 217 5.26e-28 105
Msa1026490 MtrunA17_Chr6g0477471 35.032 157 99 1 51 204 59 215 7.22e-24 95.1
Msa1026490 MtrunA17_Chr6g0477681 33.758 157 101 1 51 204 59 215 7.41e-23 92.4
Msa1026490 MtrunA17_Chr6g0477661 30.994 171 110 2 51 218 59 224 7.21e-21 87.0
Msa1026490 MtrunA17_Chr5g0428761 25.926 162 110 2 52 204 58 218 2.61e-13 67.0
Msa1026490 MtrunA17_Chr8g0392461 27.907 172 112 3 43 209 49 213 9.16e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026490 AT5G43180.1 48.864 176 72 2 46 203 53 228 5.90e-42 142
Msa1026490 AT5G10580.3 36.207 174 100 1 50 212 58 231 6.06e-28 106
Msa1026490 AT4G31330.1 38.037 163 92 2 50 203 58 220 8.62e-28 105
Msa1026490 AT5G10580.1 36.207 174 100 1 50 212 58 231 9.53e-28 105
Msa1026490 AT5G10580.4 36.207 174 100 1 50 212 58 231 9.53e-28 105
Msa1026490 AT5G24790.1 30.939 181 115 3 48 218 55 235 2.91e-15 72.8
Msa1026490 AT5G24600.2 30.357 168 100 3 50 202 56 221 1.58e-14 70.5
Msa1026490 AT5G24600.1 30.357 168 100 3 50 202 56 221 1.62e-14 70.5
Msa1026490 AT5G10580.2 32.000 125 74 1 50 163 58 182 1.57e-11 61.6

Find 49 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAAAGTGTATTGGAAAA+AGG 0.170764 7_1:+58441257 Msa1026490:CDS
GATGGGAGAAGGTATTTATT+TGG 0.189582 7_1:+58440264 Msa1026490:CDS
TTGCTATTCCTTTGATGCTT+TGG 0.254308 7_1:+58441318 Msa1026490:CDS
AACCCCTAAGGCCAAAATTT+AGG 0.268543 7_1:+58440210 Msa1026490:CDS
GCCTTAGGGGTTGGTTTGGT+TGG 0.308087 7_1:-58440199 None:intergenic
TTTGTGACCCTGTGGTAATT+TGG 0.309974 7_1:-58441414 None:intergenic
TTGTGACCCTGTGGTAATTT+GGG 0.317101 7_1:-58441413 None:intergenic
GATGCAGGGTGATGATAAAA+AGG 0.334165 7_1:+58440938 Msa1026490:intron
CCTTTGATGCTTTGGATGTT+GGG 0.346934 7_1:+58441326 Msa1026490:CDS
TCCTTTGATGCTTTGGATGT+TGG 0.347676 7_1:+58441325 Msa1026490:CDS
TTTGGCCTTAGGGGTTGGTT+TGG 0.368270 7_1:-58440203 None:intergenic
AATGTGATGGCTTCTTATAA+TGG 0.389107 7_1:-58440163 None:intergenic
GAAGTGTTCCATGTGTGAAT+TGG 0.394861 7_1:+58441525 Msa1026490:three_prime_UTR
AAGCCATCACATTTCATTCA+AGG 0.399299 7_1:+58440173 Msa1026490:CDS
AAGGCTCAAAGGGACTAATA+TGG 0.413031 7_1:-58440290 None:intergenic
ATTGGGATTACACAGTATAT+TGG 0.414048 7_1:+58441543 Msa1026490:three_prime_UTR
CTAATCAACAAACAAATTGA+TGG 0.416486 7_1:-58441146 None:intergenic
TGCTTCATCACTAAGGAAGA+TGG 0.429291 7_1:+58440246 Msa1026490:intron
GTTTACAAGAATTGTTATAG+TGG 0.442990 7_1:-58441015 None:intergenic
AAGTGTTCCATGTGTGAATT+GGG 0.444471 7_1:+58441526 Msa1026490:three_prime_UTR
TGCATCAATTAGAAATCCTA+TGG 0.457940 7_1:-58441189 None:intergenic
TTGTAATGAAAAGGCTCAAA+GGG 0.468311 7_1:-58440300 None:intergenic
GGTAAACTATTGTAATGAAA+AGG 0.473865 7_1:-58440309 None:intergenic
ATGGTGAACCATACTTCAAA+AGG 0.478925 7_1:-58441127 None:intergenic
TAGTTTCTTATGCAGCTCAA+TGG 0.486320 7_1:+58441166 Msa1026490:CDS
CCCAACATCCAAAGCATCAA+AGG 0.490638 7_1:-58441326 None:intergenic
TAAAATAACCAACCTAGCTA+TGG 0.509365 7_1:+58441450 Msa1026490:exon
AGTATATTGGTGGTTGAAAG+TGG 0.527619 7_1:+58441556 Msa1026490:three_prime_UTR
TTATGCAGCTCAATGGCCAT+AGG 0.528060 7_1:+58441173 Msa1026490:CDS
GGGATTACACAGTATATTGG+TGG 0.538985 7_1:+58441546 Msa1026490:three_prime_UTR
CAACAAACAAACCAAAGCTA+TGG 0.541351 7_1:-58441372 None:intergenic
GGGTTACACACAAAGTGTAT+TGG 0.547539 7_1:+58441250 Msa1026490:CDS
TTATGTCCCCAAATTACCAC+AGG 0.550867 7_1:+58441406 Msa1026490:CDS
GCTTCATCACTAAGGAAGAT+GGG 0.552849 7_1:+58440247 Msa1026490:intron
ATTGTAATGAAAAGGCTCAA+AGG 0.570402 7_1:-58440301 None:intergenic
TCTATTACCAACAAAAGCTA+AGG 0.570747 7_1:-58441285 None:intergenic
ACCAACCAAACCAACCCCTA+AGG 0.573569 7_1:+58440198 Msa1026490:CDS
TATAACAATTCTTGTAAACA+TGG 0.574398 7_1:+58441019 Msa1026490:CDS
CAAACAAACCAAAGCTATGG+AGG 0.579997 7_1:-58441369 None:intergenic
GGTCATAAGAGTGTTCCTCA+TGG 0.580413 7_1:-58440979 None:intergenic
TATAGTGGCTGTGAGTATTG+TGG 0.587578 7_1:-58441000 None:intergenic
TCACTAAGGAAGATGGGAGA+AGG 0.612483 7_1:+58440253 Msa1026490:intron
ACTCTTCTCATATAGTGCAA+TGG 0.614939 7_1:-58440140 None:intergenic
TAACCTTGAATGAAATGTGA+TGG 0.621540 7_1:-58440176 None:intergenic
TGTGACCCTGTGGTAATTTG+GGG 0.624411 7_1:-58441412 None:intergenic
GTGTAATCCCAATTCACACA+TGG 0.668299 7_1:-58441533 None:intergenic
TGCTATGTGTACAAACCATG+AGG 0.692474 7_1:+58440964 Msa1026490:CDS
TATGTCCCCAAATTACCACA+GGG 0.750957 7_1:+58441407 Msa1026490:CDS
GTACATCGTTTGTGACCCTG+TGG 0.751188 7_1:-58441422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_1:58440224-58440243 None:intergenic 10.0%
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_1:58440224-58440243 None:intergenic 10.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_1:58440842-58440861 Msa1026490:intron 15.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_1:58440842-58440861 Msa1026490:intron 15.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_1:58440475-58440494 Msa1026490:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_1:58440573-58440592 Msa1026490:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_1:58440636-58440655 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_1:58440643-58440662 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_1:58440730-58440749 Msa1026490:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_1:58440838-58440857 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_1:58441019-58441038 Msa1026490:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_1:58441212-58441231 Msa1026490:CDS 20.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_1:58440475-58440494 Msa1026490:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_1:58440573-58440592 Msa1026490:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_1:58440636-58440655 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_1:58440643-58440662 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_1:58440730-58440749 Msa1026490:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_1:58440838-58440857 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_1:58441019-58441038 Msa1026490:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_1:58441212-58441231 Msa1026490:CDS 20.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_1:58440312-58440331 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_1:58440377-58440396 Msa1026490:intron 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_1:58440664-58440683 Msa1026490:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_1:58440679-58440698 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_1:58440868-58440887 Msa1026490:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_1:58441018-58441037 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_1:58441149-58441168 None:intergenic 25.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_1:58440312-58440331 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_1:58440377-58440396 Msa1026490:intron 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_1:58440664-58440683 Msa1026490:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_1:58440679-58440698 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_1:58440868-58440887 Msa1026490:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_1:58441018-58441037 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_1:58441149-58441168 None:intergenic 25.0%
AATGTGATGGCTTCTTATAA+TGG - chr7_1:58440166-58440185 None:intergenic 30.0%
TAACCTTGAATGAAATGTGA+TGG - chr7_1:58440179-58440198 None:intergenic 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_1:58440216-58440235 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_1:58440217-58440236 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_1:58440239-58440258 Msa1026490:intron 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_1:58440303-58440322 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_1:58440304-58440323 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_1:58440380-58440399 Msa1026490:intron 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_1:58440676-58440695 Msa1026490:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_1:58440698-58440717 Msa1026490:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_1:58440773-58440792 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_1:58440774-58440793 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_1:58440902-58440921 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_1:58440922-58440941 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_1:58440924-58440943 Msa1026490:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_1:58441082-58441101 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_1:58441083-58441102 Msa1026490:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_1:58441119-58441138 Msa1026490:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_1:58441192-58441211 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_1:58441228-58441247 Msa1026490:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_1:58441229-58441248 Msa1026490:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_1:58441257-58441276 Msa1026490:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_1:58441258-58441277 Msa1026490:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_1:58441288-58441307 None:intergenic 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_1:58441447-58441466 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_1:58441450-58441469 Msa1026490:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_1:58441465-58441484 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_1:58441543-58441562 Msa1026490:three_prime_UTR 30.0%
AATGTGATGGCTTCTTATAA+TGG - chr7_1:58440166-58440185 None:intergenic 30.0%
TAACCTTGAATGAAATGTGA+TGG - chr7_1:58440179-58440198 None:intergenic 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_1:58440216-58440235 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_1:58440217-58440236 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_1:58440239-58440258 Msa1026490:intron 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_1:58440303-58440322 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_1:58440304-58440323 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_1:58440380-58440399 Msa1026490:intron 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_1:58440676-58440695 Msa1026490:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_1:58440698-58440717 Msa1026490:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_1:58440773-58440792 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_1:58440774-58440793 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_1:58440902-58440921 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_1:58440922-58440941 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_1:58440924-58440943 Msa1026490:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_1:58441082-58441101 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_1:58441083-58441102 Msa1026490:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_1:58441119-58441138 Msa1026490:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_1:58441192-58441211 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_1:58441228-58441247 Msa1026490:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_1:58441229-58441248 Msa1026490:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_1:58441257-58441276 Msa1026490:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_1:58441258-58441277 Msa1026490:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_1:58441288-58441307 None:intergenic 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_1:58441447-58441466 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_1:58441450-58441469 Msa1026490:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_1:58441465-58441484 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_1:58441543-58441562 Msa1026490:three_prime_UTR 30.0%
ACTCTTCTCATATAGTGCAA+TGG - chr7_1:58440143-58440162 None:intergenic 35.0%
AAGCCATCACATTTCATTCA+AGG + chr7_1:58440173-58440192 Msa1026490:CDS 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_1:58440215-58440234 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_1:58440264-58440283 Msa1026490:CDS 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_1:58440389-58440408 Msa1026490:intron 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_1:58440390-58440409 Msa1026490:intron 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_1:58440537-58440556 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_1:58440778-58440797 Msa1026490:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_1:58440779-58440798 Msa1026490:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_1:58440806-58440825 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_1:58440875-58440894 Msa1026490:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_1:58440907-58440926 Msa1026490:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_1:58440923-58440942 Msa1026490:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_1:58441130-58441149 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_1:58441166-58441185 Msa1026490:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_1:58441227-58441246 Msa1026490:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_1:58441230-58441249 Msa1026490:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_1:58441318-58441337 Msa1026490:CDS 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_1:58441361-58441380 Msa1026490:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_1:58441375-58441394 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_1:58441526-58441545 Msa1026490:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_1:58441556-58441575 Msa1026490:three_prime_UTR 35.0%
ACTCTTCTCATATAGTGCAA+TGG - chr7_1:58440143-58440162 None:intergenic 35.0%
AAGCCATCACATTTCATTCA+AGG + chr7_1:58440173-58440192 Msa1026490:CDS 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_1:58440215-58440234 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_1:58440264-58440283 Msa1026490:CDS 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_1:58440389-58440408 Msa1026490:intron 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_1:58440390-58440409 Msa1026490:intron 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_1:58440537-58440556 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_1:58440778-58440797 Msa1026490:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_1:58440779-58440798 Msa1026490:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_1:58440806-58440825 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_1:58440875-58440894 Msa1026490:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_1:58440907-58440926 Msa1026490:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_1:58440923-58440942 Msa1026490:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_1:58441130-58441149 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_1:58441166-58441185 Msa1026490:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_1:58441227-58441246 Msa1026490:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_1:58441230-58441249 Msa1026490:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_1:58441318-58441337 Msa1026490:CDS 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_1:58441361-58441380 Msa1026490:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_1:58441375-58441394 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_1:58441526-58441545 Msa1026490:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_1:58441556-58441575 Msa1026490:three_prime_UTR 35.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_1:58440211-58440230 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_1:58440210-58440229 Msa1026490:CDS 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_1:58440246-58440265 Msa1026490:intron 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_1:58440247-58440266 Msa1026490:intron 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_1:58440293-58440312 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_1:58440361-58440380 Msa1026490:intron 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_1:58440367-58440386 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_1:58440391-58440410 Msa1026490:intron 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_1:58440408-58440427 Msa1026490:intron 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_1:58440532-58440551 Msa1026490:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_1:58440538-58440557 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_1:58440756-58440775 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_1:58440757-58440776 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_1:58440938-58440957 Msa1026490:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_1:58440964-58440983 Msa1026490:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_1:58441003-58441022 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_1:58441250-58441269 Msa1026490:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_1:58441278-58441297 Msa1026490:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_1:58441325-58441344 Msa1026490:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_1:58441326-58441345 Msa1026490:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_1:58441353-58441372 None:intergenic 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_1:58441372-58441391 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_1:58441406-58441425 Msa1026490:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_1:58441407-58441426 Msa1026490:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_1:58441416-58441435 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_1:58441417-58441436 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_1:58441461-58441480 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_1:58441525-58441544 Msa1026490:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_1:58441536-58441555 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_1:58441546-58441565 Msa1026490:three_prime_UTR 40.0%
CAATGGAAAGCTAGCATAAC+TGG - chr7_1:58440126-58440145 None:intergenic 40.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_1:58440211-58440230 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_1:58440210-58440229 Msa1026490:CDS 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_1:58440246-58440265 Msa1026490:intron 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_1:58440247-58440266 Msa1026490:intron 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_1:58440293-58440312 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_1:58440361-58440380 Msa1026490:intron 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_1:58440367-58440386 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_1:58440391-58440410 Msa1026490:intron 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_1:58440408-58440427 Msa1026490:intron 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_1:58440532-58440551 Msa1026490:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_1:58440538-58440557 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_1:58440756-58440775 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_1:58440757-58440776 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_1:58440938-58440957 Msa1026490:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_1:58440964-58440983 Msa1026490:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_1:58441003-58441022 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_1:58441250-58441269 Msa1026490:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_1:58441278-58441297 Msa1026490:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_1:58441325-58441344 Msa1026490:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_1:58441326-58441345 Msa1026490:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_1:58441353-58441372 None:intergenic 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_1:58441372-58441391 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_1:58441406-58441425 Msa1026490:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_1:58441407-58441426 Msa1026490:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_1:58441416-58441435 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_1:58441417-58441436 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_1:58441461-58441480 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_1:58441525-58441544 Msa1026490:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_1:58441536-58441555 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_1:58441546-58441565 Msa1026490:three_prime_UTR 40.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_1:58440253-58440272 Msa1026490:intron 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_1:58440333-58440352 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_1:58440353-58440372 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_1:58440881-58440900 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_1:58440982-58441001 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_1:58441074-58441093 Msa1026490:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_1:58441173-58441192 Msa1026490:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_1:58441329-58441348 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_1:58441415-58441434 None:intergenic 45.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_1:58440253-58440272 Msa1026490:intron 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_1:58440333-58440352 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_1:58440353-58440372 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_1:58440881-58440900 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_1:58440982-58441001 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_1:58441074-58441093 Msa1026490:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_1:58441173-58441192 Msa1026490:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_1:58441329-58441348 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_1:58441415-58441434 None:intergenic 45.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_1:58440198-58440217 Msa1026490:CDS 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_1:58440206-58440225 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_1:58441425-58441444 None:intergenic 50.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_1:58440198-58440217 Msa1026490:CDS 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_1:58440206-58440225 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_1:58441425-58441444 None:intergenic 50.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_1:58440202-58440221 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_1:58440742-58440761 Msa1026490:intron 55.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_1:58440202-58440221 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_1:58440742-58440761 Msa1026490:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 58440126 58441587 58440126 ID=Msa1026490;Name=Msa1026490
chr7_1 mRNA 58440126 58441587 58440126 ID=Msa1026490-mRNA-1;Parent=Msa1026490;Name=Msa1026490-mRNA-1;_AED=0.13;_eAED=0.18;_QI=26|0|0.33|1|0|0.33|3|130|218
chr7_1 exon 58440126 58440231 58440126 ID=Msa1026490-mRNA-1:exon:11679;Parent=Msa1026490-mRNA-1
chr7_1 exon 58440261 58440324 58440261 ID=Msa1026490-mRNA-1:exon:11680;Parent=Msa1026490-mRNA-1
chr7_1 exon 58440945 58441587 58440945 ID=Msa1026490-mRNA-1:exon:11681;Parent=Msa1026490-mRNA-1
chr7_1 five_prime_UTR 58440126 58440151 58440126 ID=Msa1026490-mRNA-1:five_prime_utr;Parent=Msa1026490-mRNA-1
chr7_1 CDS 58440152 58440231 58440152 ID=Msa1026490-mRNA-1:cds;Parent=Msa1026490-mRNA-1
chr7_1 CDS 58440261 58440324 58440261 ID=Msa1026490-mRNA-1:cds;Parent=Msa1026490-mRNA-1
chr7_1 CDS 58440945 58441457 58440945 ID=Msa1026490-mRNA-1:cds;Parent=Msa1026490-mRNA-1
chr7_1 three_prime_UTR 58441458 58441587 58441458 ID=Msa1026490-mRNA-1:three_prime_utr;Parent=Msa1026490-mRNA-1
Gene Sequence

>Msa1026490

ATGAGAAGAGTCCATTATAAGAAGCCATCACATTTCATTCAAGGTTACCAACCAAACCAACCCCTAAGGCCAAAATTTAGGAAGATGGGAGAAGGTATTTATTTGGATACCATATTAGTCCCTTTGAGCCTTTTCATTACAATAGGTGATGATAAAAAGGCTATGCTATGTGTACAAACCATGAGGAACACTCTTATGACCACAATACTCACAGCCACTATAACAATTCTTGTAAACATGGCTTTAGCAGCTCTAAACAATAATGCATTCAATGCAAGCCATCTTTTTAGCAGTGGATTTTTTGGTTCAAAATCAGATACAATCTTCCTTTTGAAGTATGGTTCACCATCAATTTGTTTGTTGATTAGTTTCTTATGCAGCTCAATGGCCATAGGATTTCTAATTGATGCAAATTTTTTGATGAATGCTTATGGAGATTTTTTGTCTGGGGGTTACACACAAAGTGTATTGGAAAAAGGGTTTACCTTAGCTTTTGTTGGTAATAGAGTGTTTTGTCTTGCTATTCCTTTGATGCTTTGGATGTTGGGTCCAGTGCTTGTATTTTTAGCCTCCATAGCTTTGGTTTGTTTGTTGCATGAGTTTGATTATGTCCCCAAATTACCACAGGGTCACAAACGATGTACCAATGTAAAATAA

Protein sequence

>Msa1026490

MRRVHYKKPSHFIQGYQPNQPLRPKFRKMGEGIYLDTILVPLSLFITIGDDKKAMLCVQTMRNTLMTTILTATITILVNMALAALNNNAFNASHLFSSGFFGSKSDTIFLLKYGSPSICLLISFLCSSMAIGFLIDANFLMNAYGDFLSGGYTQSVLEKGFTLAFVGNRVFCLAIPLMLWMLGPVLVFLASIALVCLLHEFDYVPKLPQGHKRCTNVK*