AlfalfaGEDB | Msa1031760

M. sativa cultivar zhongmu-4 / Msa1031760

KEGG: -
GO: -
PFAM: PF13883.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031760	XP_013449504.1	96.960	329	9	1	1	329	1	328	0.0	654

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031760	A0A072U1J2	96.960	329	9	1	1	329	1	328	0.0	654

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021980	Msa1031760	0.841496	4.588230e-58	-8.615850e-47
Msa0025690	Msa1031760	0.856528	3.027802e-62	-8.615850e-47
Msa0030400	Msa1031760	0.834359	3.137722e-56	-8.615850e-47
Msa0034100	Msa1031760	0.819220	1.302079e-52	-8.615850e-47
Msa0036990	Msa1031760	0.815069	1.116313e-51	-8.615850e-47
Msa0040420	Msa1031760	0.832182	1.093560e-55	-8.615850e-47
Msa0041780	Msa1031760	0.844257	8.456969e-59	-8.615850e-47
Msa0045660	Msa1031760	0.831312	1.792651e-55	-8.615850e-47
Msa0053480	Msa1031760	0.818085	2.355721e-52	-8.615850e-47
Msa0053960	Msa1031760	0.853961	1.689964e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031760	MtrunA17_Chr7g0253351	96.960	329	9	1	1	329	1	328	0.0	654
Msa1031760	MtrunA17_Chr4g0002181	27.344	256	162	12	84	325	135	380	2.32e-17	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1031760	AT3G03890.1	75.969	258	62	0	68	325	62	319	3.10e-147	417
Msa1031760	AT3G03890.2	74.590	244	62	0	68	311	62	305	5.25e-137	391
Msa1031760	AT3G21140.1	27.863	262	153	11	84	325	137	382	2.27e-17	82.4
Msa1031760	AT1G51560.1	27.626	257	136	12	84	316	141	371	4.90e-17	81.6

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Find 101 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTACCCAAAACGCAT+TGG	0.512742	7_1:-66470018	None:intergenic
AAAATTGTACGATTTGTGTC+AGG	0.476032	7_1:+66470164	Msa1031760:CDS
AAACTGTTGTCGTTTCTTAA+AGG	0.161696	7_1:-66472247	None:intergenic
AAAGTTACCCAAAACGCATT+GGG	0.484421	7_1:-66470017	None:intergenic
AAATAGAGGTACCTGAGTAG+TGG	0.589705	7_1:-66467982	None:intergenic
AAATTGTCCTCCTCGGAAGG+TGG	0.590633	7_1:-66472013	None:intergenic
AACAGAAACCTTCGAGAATG+TGG	0.529578	7_1:-66468725	None:intergenic
AACTCAAATAGCGATTTCTG+TGG	0.639107	7_1:+66472093	Msa1031760:three_prime_UTR
AACTGTATTGGCACAATATC+CGG	0.381956	7_1:-66472285	None:intergenic
AAGAAAGAGATGCGTGGTTT+GGG	0.292216	7_1:-66467894	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATTAATTCAAGCTCATC+AGG	+	chr7_1:66468235-66468254	Msa1031760:CDS	30.0%
CAGAGAAGTGAATTACAAAA+TGG	-	chr7_1:66468270-66468289	None:intergenic	30.0%
CTAAATTGACAGAAGCTAAT+GGG	-	chr7_1:66468430-66468449	None:intergenic	30.0%
TTATGTTAATGGGGTTATTG+TGG	+	chr7_1:66468626-66468645	Msa1031760:intron	30.0%
AGCTATACAAATCAGTGTAA+GGG	-	chr7_1:66468758-66468777	None:intergenic	30.0%
TGTAAACTTCACATAAGATG+GGG	-	chr7_1:66468799-66468818	None:intergenic	30.0%
CATGTAAACTTCACATAAGA+TGG	-	chr7_1:66468801-66468820	None:intergenic	30.0%
TCTTTGAACATTACAAATGC+TGG	+	chr7_1:66468963-66468982	Msa1031760:intron	30.0%
CTTTGAACATTACAAATGCT+GGG	+	chr7_1:66468964-66468983	Msa1031760:intron	30.0%
TTATAACTGTTAAGATGACC+GGG	-	chr7_1:66469601-66469620	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	66467756	66472356	66467756	ID=Msa1031760;Name=Msa1031760
chr7_1	mRNA	66467756	66472356	66467756	ID=Msa1031760-mRNA-1;Parent=Msa1031760;Name=Msa1031760-mRNA-1;_AED=0.12;_eAED=0.12;_QI=60\|1\|1\|1\|0.91\|0.92\|13\|388\|329
chr7_1	exon	66467756	66467992	66467756	ID=Msa1031760-mRNA-1:exon:14940;Parent=Msa1031760-mRNA-1
chr7_1	exon	66468191	66468256	66468191	ID=Msa1031760-mRNA-1:exon:14941;Parent=Msa1031760-mRNA-1
chr7_1	exon	66468652	66468738	66468652	ID=Msa1031760-mRNA-1:exon:14942;Parent=Msa1031760-mRNA-1
chr7_1	exon	66469282	66469380	66469282	ID=Msa1031760-mRNA-1:exon:14943;Parent=Msa1031760-mRNA-1
chr7_1	exon	66469701	66469796	66469701	ID=Msa1031760-mRNA-1:exon:14944;Parent=Msa1031760-mRNA-1
chr7_1	exon	66469966	66470031	66469966	ID=Msa1031760-mRNA-1:exon:14945;Parent=Msa1031760-mRNA-1
chr7_1	exon	66470125	66470215	66470125	ID=Msa1031760-mRNA-1:exon:14946;Parent=Msa1031760-mRNA-1
chr7_1	exon	66470868	66470935	66470868	ID=Msa1031760-mRNA-1:exon:14947;Parent=Msa1031760-mRNA-1
chr7_1	exon	66471035	66471100	66471035	ID=Msa1031760-mRNA-1:exon:14948;Parent=Msa1031760-mRNA-1
chr7_1	exon	66471194	66471244	66471194	ID=Msa1031760-mRNA-1:exon:14949;Parent=Msa1031760-mRNA-1
chr7_1	exon	66471498	66471562	66471498	ID=Msa1031760-mRNA-1:exon:14950;Parent=Msa1031760-mRNA-1
chr7_1	exon	66471671	66471757	66471671	ID=Msa1031760-mRNA-1:exon:14951;Parent=Msa1031760-mRNA-1
chr7_1	exon	66471998	66472356	66471998	ID=Msa1031760-mRNA-1:exon:14952;Parent=Msa1031760-mRNA-1
chr7_1	five_prime_UTR	66467756	66467815	66467756	ID=Msa1031760-mRNA-1:five_prime_utr;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66467816	66467992	66467816	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66468191	66468256	66468191	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66468652	66468738	66468652	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66469282	66469380	66469282	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66469701	66469796	66469701	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66469966	66470031	66469966	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66470125	66470215	66470125	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66470868	66470935	66470868	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66471035	66471100	66471035	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66471194	66471244	66471194	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66471498	66471562	66471498	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	CDS	66471671	66471728	66471671	ID=Msa1031760-mRNA-1:cds;Parent=Msa1031760-mRNA-1
chr7_1	three_prime_UTR	66471729	66471757	66471729	ID=Msa1031760-mRNA-1:three_prime_utr;Parent=Msa1031760-mRNA-1
chr7_1	three_prime_UTR	66471998	66472356	66471998	ID=Msa1031760-mRNA-1:three_prime_utr;Parent=Msa1031760-mRNA-1

Gene Sequence

>Msa1031760

ATGAAGACTATGGTGACGCCATTGACAAGAGTCTCTACATTTTTTCGTCCAATTCCCCATAATGCCCTTCCCTTCTCCCCCAAACCACGCATCTCTTTCTTACCAAACTCTTTCACCTTCACTTCTCTCACTCCCTCTCTTTCAATGGCTTCTTCTTCTTCCCAATCCACTACTCAGGTTGTTTCCTCTGGTGATGTTAAAAATAAAAAAGATGATGTCTTTCAATTAATTCAAGCTCATCAGGAAAAAGCTGCAAGACTTCCACCAGTTGAAGAAATTCGAACTGTCCTTGATCGTAGTCTACGTGGGACGCTCTCCACATTCTCGAAGAAGTATGACGGTTATCCATCAGGATCTATGGTTGACTTTGCATGTGATGCAAATGGATGTCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGACTTAGCGGCTAATCCTAAATGTTCAGTGCTTTTGGCTAGAGATCCTGAAGATAGGACTGATTTGGTGATCACTATCCACGGTGACGCTATCTTTGTACCTGAAAAGGATAAAGAGGCCATACGAGCTGCATATTTGGCGAGACATCCCAATGCGTTTTGGGTTGACTTTGGAGACTTCCGATTTGTACGCATTGAACCAAAAATTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGAGTTTACCGGAGATGAGTACAAATCAGCAAAAGTTGACCCCATTGCTCAGTTTTCCAAGCCAGTAGCGTCGCACATGAACAAAGATCACGGTGAAGATACTAAAGCGATTGTGCAGCACTGGACCTCAGTTCCGGTGGACTTTGCTGACATAATAGATTTGGATCGTCTAGGTTTCAATGTTAAGGCTGGTTATCAGGGAGATAAATTCAAGCTCCGTGTGCCTTTCCCTCGACCTGCAGAAGATAGAAAGGATGTTAAGACTCTCATTGTTGAGATGCTCCAAGCTGCCAAGCCTCAAGTTGATTGA

Protein sequence

>Msa1031760

MKTMVTPLTRVSTFFRPIPHNALPFSPKPRISFLPNSFTFTSLTPSLSMASSSSQSTTQVVSSGDVKNKKDDVFQLIQAHQEKAARLPPVEEIRTVLDRSLRGTLSTFSKKYDGYPSGSMVDFACDANGCPILAVSDLAVHSKDLAANPKCSVLLARDPEDRTDLVITIHGDAIFVPEKDKEAIRAAYLARHPNAFWVDFGDFRFVRIEPKIVRFVSGVATALLGSGEFTGDEYKSAKVDPIAQFSKPVASHMNKDHGEDTKAIVQHWTSVPVDFADIIDLDRLGFNVKAGYQGDKFKLRVPFPRPAEDRKDVKTLIVEMLQAAKPQVD*