AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191100 MtrunA17_Chr2g0280641 97.044 203 6 0 1 203 1 203 8.33e-145 401
Msa0191100 MtrunA17_Chr2g0318961 75.000 200 50 0 1 200 1 200 4.82e-110 313
Msa0191100 MtrunA17_Chr4g0048841 76.263 198 47 0 6 203 41 238 9.44e-109 311
Msa0191100 MtrunA17_Chr8g0361451 73.000 200 54 0 1 200 1 200 6.90e-107 305
Msa0191100 MtrunA17_Chr5g0429671 66.332 199 66 1 3 200 4 202 1.37e-96 279
Msa0191100 MtrunA17_Chr5g0403681 61.000 200 77 1 4 202 53 252 2.42e-84 250
Msa0191100 MtrunA17_Chr4g0034601 60.406 197 77 1 4 199 52 248 1.87e-82 245
Msa0191100 MtrunA17_Chr4g0048831 75.833 120 25 1 84 203 1 116 1.23e-59 182
Msa0191100 MtrunA17_Chr8g0361461 69.231 117 36 0 84 200 1 117 4.69e-53 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191100 AT5G54500.1 76.238 202 48 0 1 202 1 202 6.19e-112 318
Msa0191100 AT4G27270.1 74.627 201 51 0 1 201 1 201 5.93e-111 316
Msa0191100 AT4G27270.3 74.211 190 49 0 12 201 1 190 3.44e-103 296
Msa0191100 AT4G27270.2 74.211 190 49 0 12 201 1 190 3.44e-103 296
Msa0191100 AT5G58800.1 63.500 200 72 1 2 200 3 202 3.21e-92 268
Msa0191100 AT5G58800.2 63.500 200 72 1 2 200 3 202 3.21e-92 268
Msa0191100 AT5G54500.2 77.160 162 37 0 1 162 1 162 1.49e-89 263
Msa0191100 AT4G36750.1 61.929 197 74 1 4 199 74 270 4.82e-89 263
Msa0191100 AT4G27270.4 74.000 150 39 0 52 201 1 150 3.02e-79 234

Find 43 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTCAGACAATATTTC+TGG 0.196797 2_1:-6630664 None:intergenic
CCATATGGTTCAGGAACTTT+TGG 0.217112 2_1:+6632424 Msa0191100:CDS
TTGATGCAACTGGAAGTTTA+TGG 0.219786 2_1:+6630821 Msa0191100:CDS
TCAGCTTCAGCAAGCTGTTT+AGG 0.310193 2_1:-6630736 None:intergenic
CATCAGGGAAAATACTTTGC+TGG 0.334949 2_1:+6632496 Msa0191100:CDS
GTACCTATTGGATACACATT+TGG 0.364946 2_1:+6632361 Msa0191100:CDS
TGGAACAAACAAACACTTGC+AGG 0.373618 2_1:+6630841 Msa0191100:CDS
TTACATGATGTAAACTTTAG+TGG 0.377965 2_1:-6629961 None:intergenic
GAGGTGCTTTCATCTTCCTT+AGG 0.379219 2_1:-6630687 None:intergenic
GACATCATTCCATATCTTGC+TGG 0.429420 2_1:-6630778 None:intergenic
GGTGGATCACCATATGGTTC+AGG 0.438436 2_1:+6632415 Msa0191100:CDS
AGAACCTAGTGAGTTAGAAT+TGG 0.452588 2_1:+6632462 Msa0191100:CDS
GCACCAAATGTGTATCCAAT+AGG 0.462098 2_1:-6632364 None:intergenic
TGACTAACGGTGTTTCCTCT+TGG 0.462284 2_1:-6630909 None:intergenic
CTAGCTGAAGAGATTCTAAA+GGG 0.480491 2_1:+6630359 Msa0191100:CDS
TCCACTGCTTCTCAAGGAAG+TGG 0.481946 2_1:+6630886 Msa0191100:CDS
CCAAAAGTTCCTGAACCATA+TGG 0.483267 2_1:-6632424 None:intergenic
GCTAGCTGAAGAGATTCTAA+AGG 0.492200 2_1:+6630358 Msa0191100:CDS
TTTAGTTACCATTCTGTGTA+CGG 0.493434 2_1:+6630323 Msa0191100:intron
ATTGGATACACATTTGGTGC+TGG 0.493510 2_1:+6632367 Msa0191100:CDS
ATGTCTGGAACTTCACTCCT+TGG 0.507106 2_1:-6630709 None:intergenic
AGCTGTTTAGGTGAAATGTC+TGG 0.522083 2_1:-6630724 None:intergenic
GTGAAGGGTGGATCACCATA+TGG 0.524280 2_1:+6632409 Msa0191100:CDS
GCCACTTCCTTGAGAAGCAG+TGG 0.524631 2_1:-6630887 None:intergenic
CAACATGTCCGTACACAGAA+TGG 0.533687 2_1:-6630331 None:intergenic
TCTGGAACTTCACTCCTTGG+AGG 0.536604 2_1:-6630706 None:intergenic
AGTAGAAGCAAAACTCTGGC+AGG 0.554251 2_1:+6630400 Msa0191100:CDS
ACACTTGCAGGAAAGCCTGC+TGG 0.566808 2_1:+6630853 Msa0191100:CDS
AAGGAGTAGAAGCAAAACTC+TGG 0.567226 2_1:+6630396 Msa0191100:CDS
GAGATGGAAAAGGTGAAGGG+TGG 0.571043 2_1:+6632397 Msa0191100:CDS
AAACAGCTTGCTGAAGCTGA+TGG 0.579655 2_1:+6630739 Msa0191100:CDS
TATTGTCTGAAGAAATCCTA+AGG 0.587507 2_1:+6630671 Msa0191100:CDS
TGAGCCAATTCTAACTCACT+AGG 0.588519 2_1:-6632466 None:intergenic
TGGTGCTGGAATGTTTGAGA+TGG 0.592919 2_1:+6632381 Msa0191100:CDS
GTTTGAGATGGAAAAGGTGA+AGG 0.593131 2_1:+6632393 Msa0191100:CDS
TGGAATGTTTGAGATGGAAA+AGG 0.598335 2_1:+6632387 Msa0191100:CDS
GGAAGATGAAAGCACCTCCA+AGG 0.601210 2_1:+6630692 Msa0191100:CDS
GGAATTGCAAAGAAGCTCAA+AGG 0.612793 2_1:+6632517 Msa0191100:CDS
TTCTCAAGGAAGTGGCCAAG+AGG 0.636619 2_1:+6630894 Msa0191100:CDS
AGCTGAAGAGATTCTAAAGG+GGG 0.639484 2_1:+6630361 Msa0191100:CDS
ATTACTCAGCTTGTTCACCA+TGG 0.640802 2_1:+6632328 Msa0191100:CDS
TAGCTGAAGAGATTCTAAAG+GGG 0.681515 2_1:+6630360 Msa0191100:CDS
TTTGAGATGGAAAAGGTGAA+GGG 0.701314 2_1:+6632394 Msa0191100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATATATATCATTAG+TGG - chr2_1:6630629-6630648 None:intergenic 10.0%
!! TTTATTGAGAAAAAAAATAA+AGG + chr2_1:6631215-6631234 Msa0191100:intron 10.0%
!!! AATTAGATCATTTTTTTTTT+TGG + chr2_1:6631562-6631581 Msa0191100:intron 10.0%
!!! GATATATTTTTTTTTTTTGT+CGG - chr2_1:6631682-6631701 None:intergenic 10.0%
!!! ATATAAATTTATTCTAAAAG+AGG + chr2_1:6632076-6632095 Msa0191100:intron 10.0%
!!! TATAAATTTATTCTAAAAGA+GGG + chr2_1:6632077-6632096 Msa0191100:intron 10.0%
!! CAAAAAATTAACATATTTAT+AGG + chr2_1:6632167-6632186 Msa0191100:intron 10.0%
!!! TTTTTTTTTACTGTTTTTGT+TGG + chr2_1:6630090-6630109 Msa0191100:intron 15.0%
!! AAGTATAAATGAATTACAAT+TGG + chr2_1:6630488-6630507 Msa0191100:intron 15.0%
!!! ATTTTTACAATACACTAAAA+TGG - chr2_1:6631291-6631310 None:intergenic 15.0%
!! TGTATTGTAAAAATAGTAAA+AGG + chr2_1:6631297-6631316 Msa0191100:intron 15.0%
!! TAAATTTCATATGAGGATAT+AGG - chr2_1:6630294-6630313 None:intergenic 20.0%
!! TAATCTGAATGAAAATGAAA+AGG - chr2_1:6630432-6630451 None:intergenic 20.0%
!! TGGGAAAAATAAGATTATTA+CGG - chr2_1:6631362-6631381 None:intergenic 20.0%
!!! TCTTTTTAAAAAAAAAGGGT+GGG - chr2_1:6631501-6631520 None:intergenic 20.0%
!!! TTCTTTTTAAAAAAAAAGGG+TGG - chr2_1:6631502-6631521 None:intergenic 20.0%
!!! AATTGAAGATGAAAAACTTT+TGG + chr2_1:6632105-6632124 Msa0191100:intron 20.0%
!! TAAATTCTACAAGGAAAAAA+GGG - chr2_1:6632212-6632231 None:intergenic 20.0%
! TTACATGATGTAAACTTTAG+TGG - chr2_1:6629964-6629983 None:intergenic 25.0%
!! ATTTTTACGCGTTTTATGTT+TGG + chr2_1:6630053-6630072 Msa0191100:intron 25.0%
! CAAAGATAAGCTTAATTTCT+CGG + chr2_1:6630210-6630229 Msa0191100:intron 25.0%
! TGCAAAGTAAATTTCATATG+AGG - chr2_1:6630301-6630320 None:intergenic 25.0%
!! TTAGTGCTTGTTTAGTATTT+TGG + chr2_1:6630520-6630539 Msa0191100:intron 25.0%
! ATTTCTTCAGACAATATTTC+TGG - chr2_1:6630667-6630686 None:intergenic 25.0%
!!! AAAGTATTTTTTGATGCAAC+TGG + chr2_1:6630811-6630830 Msa0191100:CDS 25.0%
! TAGAAATTAGAAAGATGAGA+AGG - chr2_1:6630940-6630959 None:intergenic 25.0%
!! ACATTTTAAATGTGAAGAAG+TGG + chr2_1:6631008-6631027 Msa0191100:intron 25.0%
! AACCTATATGTTTATCTTAC+AGG + chr2_1:6631129-6631148 Msa0191100:intron 25.0%
! AACCTGTAAGATAAACATAT+AGG - chr2_1:6631134-6631153 None:intergenic 25.0%
! TATATGTTTATCTTACAGGT+TGG + chr2_1:6631133-6631152 Msa0191100:intron 25.0%
! TTTACAATACACTAAAATGG+CGG - chr2_1:6631288-6631307 None:intergenic 25.0%
! GGGAAAAATAAGATTATTAC+GGG - chr2_1:6631361-6631380 None:intergenic 25.0%
!!! CTTTTTAAAAAAAAAGGGTG+GGG - chr2_1:6631500-6631519 None:intergenic 25.0%
!! TTTTATAACGAGACTTAGTT+GGG - chr2_1:6631646-6631665 None:intergenic 25.0%
!! TTTTTATAACGAGACTTAGT+TGG - chr2_1:6631647-6631666 None:intergenic 25.0%
! TAAACTAACTAACAAACTTC+CGG + chr2_1:6631767-6631786 Msa0191100:intron 25.0%
! AAATTCTACAAGGAAAAAAG+GGG - chr2_1:6632211-6632230 None:intergenic 25.0%
! CTAAATTCTACAAGGAAAAA+AGG - chr2_1:6632213-6632232 None:intergenic 25.0%
!!! CTTTTTTCCTTGTAGAATTT+AGG + chr2_1:6632211-6632230 Msa0191100:intron 25.0%
!!! CTATGGTTTTTCAAATTTTC+AGG + chr2_1:6632296-6632315 Msa0191100:intron 25.0%
!! CTTATCTTTGGTTCTATGTT+TGG - chr2_1:6630200-6630219 None:intergenic 30.0%
CGAGAAATTAAGCTTATCTT+TGG - chr2_1:6630212-6630231 None:intergenic 30.0%
TTTAGTTACCATTCTGTGTA+CGG + chr2_1:6630323-6630342 Msa0191100:intron 30.0%
TATTGTCTGAAGAAATCCTA+AGG + chr2_1:6630671-6630690 Msa0191100:CDS 30.0%
GTATTACATATTATACGCAG+AGG - chr2_1:6631057-6631076 None:intergenic 30.0%
!! TATCTTACAGGTTGGTATTA+AGG + chr2_1:6631141-6631160 Msa0191100:intron 30.0%
! TATTTTTCCCACTTAGTGTA+TGG + chr2_1:6631371-6631390 Msa0191100:intron 30.0%
!!! CTTTTTTCCATACACTAAGT+GGG - chr2_1:6631381-6631400 None:intergenic 30.0%
!!! TCTTTTTTCCATACACTAAG+TGG - chr2_1:6631382-6631401 None:intergenic 30.0%
ACAAATAAATCCACTTACCA+TGG + chr2_1:6631435-6631454 Msa0191100:intron 30.0%
TTTATAACGAGACTTAGTTG+GGG - chr2_1:6631645-6631664 None:intergenic 30.0%
TCTGTTAACTATACAGAGTA+CGG + chr2_1:6631800-6631819 Msa0191100:intron 30.0%
! TGAAGATGAAAAACTTTTGG+AGG + chr2_1:6632108-6632127 Msa0191100:intron 30.0%
! AAAGGGGGTAAATATGTTTT+TGG - chr2_1:6632195-6632214 None:intergenic 30.0%
AATTCTACAAGGAAAAAAGG+GGG - chr2_1:6632210-6632229 None:intergenic 30.0%
CAAAGTAACTGTTTGTTCTA+TGG + chr2_1:6632279-6632298 Msa0191100:intron 30.0%
TAGGTACAAAAATCATACCA+TGG - chr2_1:6632348-6632367 None:intergenic 30.0%
! GGTATGATTTTTGTACCTAT+TGG + chr2_1:6632349-6632368 Msa0191100:CDS 30.0%
!!! CTTACTGTCTAACTGGTTTT+TGG + chr2_1:6630003-6630022 Msa0191100:intron 35.0%
CTAGCTGAAGAGATTCTAAA+GGG + chr2_1:6630359-6630378 Msa0191100:CDS 35.0%
! TAGCTGAAGAGATTCTAAAG+GGG + chr2_1:6630360-6630379 Msa0191100:CDS 35.0%
! CGTTGACATTGACATTGATT+TGG - chr2_1:6630555-6630574 None:intergenic 35.0%
GTGCATATTTGATATCAGAG+TGG - chr2_1:6630601-6630620 None:intergenic 35.0%
!!! GAAGCTGATGGTTTTTTGTT+TGG + chr2_1:6630751-6630770 Msa0191100:CDS 35.0%
!!! TTTGGTTTTCCAGCAAGATA+TGG + chr2_1:6630769-6630788 Msa0191100:CDS 35.0%
TTGATGCAACTGGAAGTTTA+TGG + chr2_1:6630821-6630840 Msa0191100:CDS 35.0%
! TTTTGTCAAGTATAGCCTAG+TGG + chr2_1:6630974-6630993 Msa0191100:intron 35.0%
TACATATTATACGCAGAGGT+CGG - chr2_1:6631053-6631072 None:intergenic 35.0%
CAAGTTCTCATCTCTATGTT+TGG - chr2_1:6631104-6631123 None:intergenic 35.0%
TTTCTTGGACTCTACGTATA+CGG - chr2_1:6631261-6631280 None:intergenic 35.0%
! ATTACGGGTTTGAGATAATG+TGG - chr2_1:6631346-6631365 None:intergenic 35.0%
ATTACATCTTCCATGGTAAG+TGG - chr2_1:6631448-6631467 None:intergenic 35.0%
TTACCATGGAAGATGTAATC+AGG + chr2_1:6631449-6631468 Msa0191100:intron 35.0%
TACCATGGAAGATGTAATCA+GGG + chr2_1:6631450-6631469 Msa0191100:intron 35.0%
TTTCCTTGTAGAATTTAGGC+TGG + chr2_1:6632215-6632234 Msa0191100:intron 35.0%
! CTTTTAGCAAGTATATCCGA+TGG - chr2_1:6632246-6632265 None:intergenic 35.0%
GTACCTATTGGATACACATT+TGG + chr2_1:6632361-6632380 Msa0191100:CDS 35.0%
! TGGAATGTTTGAGATGGAAA+AGG + chr2_1:6632387-6632406 Msa0191100:CDS 35.0%
! TTTGAGATGGAAAAGGTGAA+GGG + chr2_1:6632394-6632413 Msa0191100:CDS 35.0%
! CATATGGTTCAGGAACTTTT+GGG + chr2_1:6632425-6632444 Msa0191100:CDS 35.0%
! ATATGGTTCAGGAACTTTTG+GGG + chr2_1:6632426-6632445 Msa0191100:CDS 35.0%
AGAACCTAGTGAGTTAGAAT+TGG + chr2_1:6632462-6632481 Msa0191100:CDS 35.0%
GTTAGACAGTAAGAAGAGAG+AGG - chr2_1:6629996-6630015 None:intergenic 40.0%
CTCTCTTCTTACTGTCTAAC+TGG + chr2_1:6629996-6630015 Msa0191100:intron 40.0%
! CTATGTTTGGAGTAGTTGCT+AGG - chr2_1:6630187-6630206 None:intergenic 40.0%
GCTAGCTGAAGAGATTCTAA+AGG + chr2_1:6630358-6630377 Msa0191100:CDS 40.0%
! AGCTGAAGAGATTCTAAAGG+GGG + chr2_1:6630361-6630380 Msa0191100:CDS 40.0%
AAGGAGTAGAAGCAAAACTC+TGG + chr2_1:6630396-6630415 Msa0191100:CDS 40.0%
AGCTGTTTAGGTGAAATGTC+TGG - chr2_1:6630727-6630746 None:intergenic 40.0%
GACATCATTCCATATCTTGC+TGG - chr2_1:6630781-6630800 None:intergenic 40.0%
TGGAACAAACAAACACTTGC+AGG + chr2_1:6630841-6630860 Msa0191100:CDS 40.0%
! TTTTTCTCCACTGCTTCTCA+AGG + chr2_1:6630880-6630899 Msa0191100:CDS 40.0%
TGAGAAGGATGAGTGACTAA+CGG - chr2_1:6630925-6630944 None:intergenic 40.0%
! ATGTGAAGAAGTGGAGTATC+TGG + chr2_1:6631017-6631036 Msa0191100:intron 40.0%
! TGTGAAGAAGTGGAGTATCT+GGG + chr2_1:6631018-6631037 Msa0191100:intron 40.0%
ACATATTATACGCAGAGGTC+GGG - chr2_1:6631052-6631071 None:intergenic 40.0%
TTCTTGGACTCTACGTATAC+GGG - chr2_1:6631260-6631279 None:intergenic 40.0%
!! TAAAATGGCGGACTCTTTCT+TGG - chr2_1:6631276-6631295 None:intergenic 40.0%
ACCATGGAAGATGTAATCAG+GGG + chr2_1:6631451-6631470 Msa0191100:intron 40.0%
! GTTAACAGAGAGTTTGAGAC+CGG - chr2_1:6631789-6631808 None:intergenic 40.0%
AAGCCAGCCTAAATTCTACA+AGG - chr2_1:6632221-6632240 None:intergenic 40.0%
! ATTACTCAGCTTGTTCACCA+TGG + chr2_1:6632328-6632347 Msa0191100:CDS 40.0%
GCACCAAATGTGTATCCAAT+AGG - chr2_1:6632367-6632386 None:intergenic 40.0%
!! ATTGGATACACATTTGGTGC+TGG + chr2_1:6632367-6632386 Msa0191100:CDS 40.0%
! GTTTGAGATGGAAAAGGTGA+AGG + chr2_1:6632393-6632412 Msa0191100:CDS 40.0%
CCAAAAGTTCCTGAACCATA+TGG - chr2_1:6632427-6632446 None:intergenic 40.0%
! CCATATGGTTCAGGAACTTT+TGG + chr2_1:6632424-6632443 Msa0191100:CDS 40.0%
!! ACTTTTGGGGAACATGGAAT+AGG + chr2_1:6632439-6632458 Msa0191100:CDS 40.0%
TGAGCCAATTCTAACTCACT+AGG - chr2_1:6632469-6632488 None:intergenic 40.0%
!! ATTGGCTCAAGCTTTTCATC+AGG + chr2_1:6632480-6632499 Msa0191100:CDS 40.0%
! TTGGCTCAAGCTTTTCATCA+GGG + chr2_1:6632481-6632500 Msa0191100:CDS 40.0%
CATCAGGGAAAATACTTTGC+TGG + chr2_1:6632496-6632515 Msa0191100:CDS 40.0%
GGAATTGCAAAGAAGCTCAA+AGG + chr2_1:6632517-6632536 Msa0191100:CDS 40.0%
CAACATGTCCGTACACAGAA+TGG - chr2_1:6630334-6630353 None:intergenic 45.0%
AGTAGAAGCAAAACTCTGGC+AGG + chr2_1:6630400-6630419 Msa0191100:CDS 45.0%
! GAGGTGCTTTCATCTTCCTT+AGG - chr2_1:6630690-6630709 None:intergenic 45.0%
! ATGTCTGGAACTTCACTCCT+TGG - chr2_1:6630712-6630731 None:intergenic 45.0%
TCAGCTTCAGCAAGCTGTTT+AGG - chr2_1:6630739-6630758 None:intergenic 45.0%
!! AAACAGCTTGCTGAAGCTGA+TGG + chr2_1:6630739-6630758 Msa0191100:CDS 45.0%
TGACTAACGGTGTTTCCTCT+TGG - chr2_1:6630912-6630931 None:intergenic 45.0%
! ATGTGTGAGCTCTAACCACT+AGG - chr2_1:6630992-6631011 None:intergenic 45.0%
! GTGAAGAAGTGGAGTATCTG+GGG + chr2_1:6631019-6631038 Msa0191100:intron 45.0%
! CTTTAACTCTGTTGGTAGGG+GGG - chr2_1:6631079-6631098 None:intergenic 45.0%
! CCTTTAACTCTGTTGGTAGG+GGG - chr2_1:6631080-6631099 None:intergenic 45.0%
! CCCTTTAACTCTGTTGGTAG+GGG - chr2_1:6631081-6631100 None:intergenic 45.0%
CCCCTACCAACAGAGTTAAA+GGG + chr2_1:6631078-6631097 Msa0191100:intron 45.0%
GCCCTTTAACTCTGTTGGTA+GGG - chr2_1:6631082-6631101 None:intergenic 45.0%
GTTTGGCCCTTTAACTCTGT+TGG - chr2_1:6631087-6631106 None:intergenic 45.0%
CCATGGAAGATGTAATCAGG+GGG + chr2_1:6631452-6631471 Msa0191100:intron 45.0%
CATGGAAGATGTAATCAGGG+GGG + chr2_1:6631453-6631472 Msa0191100:intron 45.0%
AAGATGTAATCAGGGGGGAA+GGG + chr2_1:6631458-6631477 Msa0191100:intron 45.0%
TAACGAGACTTAGTTGGGGT+AGG - chr2_1:6631641-6631660 None:intergenic 45.0%
! TGGTGCTGGAATGTTTGAGA+TGG + chr2_1:6632381-6632400 Msa0191100:CDS 45.0%
!! TCAGGAACTTTTGGGGAACA+TGG + chr2_1:6632433-6632452 Msa0191100:CDS 45.0%
!! ATATTATAATTCATATATTA+AGG + chr2_1:6630639-6630658 Msa0191100:intron 5.0%
!!! TTTTTCTTTTTAAAAAAAAA+GGG - chr2_1:6631505-6631524 None:intergenic 5.0%
!!! ATTTTTCTTTTTAAAAAAAA+AGG - chr2_1:6631506-6631525 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG - chr2_1:6631903-6631922 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG - chr2_1:6631903-6631922 None:intergenic 5.0%
!! GGAAGATGAAAGCACCTCCA+AGG + chr2_1:6630692-6630711 Msa0191100:CDS 50.0%
! TCTGGAACTTCACTCCTTGG+AGG - chr2_1:6630709-6630728 None:intergenic 50.0%
GTGGAGAAAAAGAAGCCAGC+AGG - chr2_1:6630871-6630890 None:intergenic 50.0%
TCCACTGCTTCTCAAGGAAG+TGG + chr2_1:6630886-6630905 Msa0191100:CDS 50.0%
TTCTCAAGGAAGTGGCCAAG+AGG + chr2_1:6630894-6630913 Msa0191100:CDS 50.0%
CCCCCTACCAACAGAGTTAA+AGG + chr2_1:6631077-6631096 Msa0191100:intron 50.0%
GGCCCTTTAACTCTGTTGGT+AGG - chr2_1:6631083-6631102 None:intergenic 50.0%
CCCCCTGATTACATCTTCCA+TGG - chr2_1:6631455-6631474 None:intergenic 50.0%
GAAGATGTAATCAGGGGGGA+AGG + chr2_1:6631457-6631476 Msa0191100:intron 50.0%
AAAAAAGGGTGGGGTAGCCT+TGG - chr2_1:6631491-6631510 None:intergenic 50.0%
!! ATTTAGGCTGGCTTCGCCAT+CGG + chr2_1:6632227-6632246 Msa0191100:intron 50.0%
GAGATGGAAAAGGTGAAGGG+TGG + chr2_1:6632397-6632416 Msa0191100:CDS 50.0%
GTGAAGGGTGGATCACCATA+TGG + chr2_1:6632409-6632428 Msa0191100:CDS 50.0%
GGTGGATCACCATATGGTTC+AGG + chr2_1:6632415-6632434 Msa0191100:CDS 50.0%
AAGGGGGCTGCATCTGTAGA+AGG + chr2_1:6630377-6630396 Msa0191100:CDS 55.0%
ACACTTGCAGGAAAGCCTGC+TGG + chr2_1:6630853-6630872 Msa0191100:CDS 55.0%
GCCACTTCCTTGAGAAGCAG+TGG - chr2_1:6630890-6630909 None:intergenic 55.0%
GGGGGAAGGGTAGTGTGCCA+AGG + chr2_1:6631471-6631490 Msa0191100:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6629957 6632549 6629957 ID=Msa0191100;Name=Msa0191100
chr2_1 mRNA 6629957 6632549 6629957 ID=Msa0191100-mRNA-1;Parent=Msa0191100;Name=Msa0191100-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|203
chr2_1 exon 6629957 6629979 6629957 ID=Msa0191100-mRNA-1:exon:3017;Parent=Msa0191100-mRNA-1
chr2_1 exon 6630328 6630421 6630328 ID=Msa0191100-mRNA-1:exon:3018;Parent=Msa0191100-mRNA-1
chr2_1 exon 6630661 6630923 6630661 ID=Msa0191100-mRNA-1:exon:3019;Parent=Msa0191100-mRNA-1
chr2_1 exon 6632318 6632549 6632318 ID=Msa0191100-mRNA-1:exon:3020;Parent=Msa0191100-mRNA-1
chr2_1 CDS 6629957 6629979 6629957 ID=Msa0191100-mRNA-1:cds;Parent=Msa0191100-mRNA-1
chr2_1 CDS 6630328 6630421 6630328 ID=Msa0191100-mRNA-1:cds;Parent=Msa0191100-mRNA-1
chr2_1 CDS 6630661 6630923 6630661 ID=Msa0191100-mRNA-1:cds;Parent=Msa0191100-mRNA-1
chr2_1 CDS 6632318 6632549 6632318 ID=Msa0191100-mRNA-1:cds;Parent=Msa0191100-mRNA-1
Gene Sequence

>Msa0191100

ATGGCCACTAAAGTTTACATCATTTACCATTCTGTGTACGGACATGTTGAGAAGCTAGCTGAAGAGATTCTAAAGGGGGCTGCATCTGTAGAAGGAGTAGAAGCAAAACTCTGGCAGGTACCAGAAATATTGTCTGAAGAAATCCTAAGGAAGATGAAAGCACCTCCAAGGAGTGAAGTTCCAGACATTTCACCTAAACAGCTTGCTGAAGCTGATGGTTTTTTGTTTGGTTTTCCAGCAAGATATGGAATGATGTCTGCTCAATTCAAAGTATTTTTTGATGCAACTGGAAGTTTATGGAACAAACAAACACTTGCAGGAAAGCCTGCTGGCTTCTTTTTCTCCACTGCTTCTCAAGGAAGTGGCCAAGAGGAAACACCGTTTACATCTATTACTCAGCTTGTTCACCATGGTATGATTTTTGTACCTATTGGATACACATTTGGTGCTGGAATGTTTGAGATGGAAAAGGTGAAGGGTGGATCACCATATGGTTCAGGAACTTTTGGGGAACATGGAATAGGAGAACCTAGTGAGTTAGAATTGGCTCAAGCTTTTCATCAGGGAAAATACTTTGCTGGAATTGCAAAGAAGCTCAAAGGATCACAATGA

Protein sequence

>Msa0191100

MATKVYIIYHSVYGHVEKLAEEILKGAASVEGVEAKLWQVPEILSEEILRKMKAPPRSEVPDISPKQLAEADGFLFGFPARYGMMSAQFKVFFDATGSLWNKQTLAGKPAGFFFSTASQGSGQEETPFTSITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGSGTFGEHGIGEPSELELAQAFHQGKYFAGIAKKLKGSQ*