Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84455.t1 | XP_013448528.1 | 97.1 | 210 | 6 | 0 | 1 | 210 | 8 | 217 | 1.10E-103 | 386 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84455.t1 | Q08069 | 85.8 | 212 | 27 | 2 | 1 | 209 | 8 | 219 | 4.4e-96 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84455.t1 | B7FMW0 | 97.1 | 210 | 6 | 0 | 1 | 210 | 8 | 217 | 8.3e-104 | 386.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene84455 | 0.874915 | 4.65E-68 | -1.69E-46 |
| MS.gene049340 | MS.gene84455 | 0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene84455 | 0.847178 | 1.36E-59 | -1.69E-46 |
| MS.gene049580 | MS.gene84455 | 0.828807 | 7.32E-55 | -1.69E-46 |
| MS.gene049821 | MS.gene84455 | 0.808742 | 2.67E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene84455 | 0.820482 | 6.70E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene84455 | 0.836868 | 7.27E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene84455 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene84455 | 0.805909 | 1.06E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene84455 | 0.906888 | 9.16E-81 | -1.69E-46 |
| MS.gene050303 | MS.gene84455 | 0.84443 | 7.60E-59 | -1.69E-46 |
| MS.gene050689 | MS.gene84455 | 0.822278 | 2.58E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene84455 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene84455 | 0.818946 | 1.50E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene84455 | 0.858467 | 8.07E-63 | -1.69E-46 |
| MS.gene050916 | MS.gene84455 | 0.849706 | 2.72E-60 | -1.69E-46 |
| MS.gene050955 | MS.gene84455 | 0.802833 | 4.65E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene84455 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene84455 | 0.824138 | 9.50E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene84455 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene84455 | 0.808673 | 2.76E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene84455 | 0.846893 | 1.63E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene84455 | 0.855564 | 5.80E-62 | -1.69E-46 |
| MS.gene05134 | MS.gene84455 | 0.882009 | 1.49E-70 | -1.69E-46 |
| MS.gene051451 | MS.gene84455 | 0.833056 | 6.64E-56 | -1.69E-46 |
| MS.gene051633 | MS.gene84455 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene84455 | 0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene84455 | 0.840651 | 7.65E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene84455 | 0.830332 | 3.12E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene84455 | 0.850822 | 1.32E-60 | -1.69E-46 |
| MS.gene05188 | MS.gene84455 | 0.828596 | 8.23E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene84455 | 0.879266 | 1.43E-69 | -1.69E-46 |
| MS.gene051975 | MS.gene84455 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene84455 | 0.836223 | 1.06E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene84455 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene84455 | 0.829588 | 4.73E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene84455 | 0.825804 | 3.84E-54 | -1.69E-46 |
| MS.gene052879 | MS.gene84455 | 0.823267 | 1.52E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene84455 | 0.807888 | 4.06E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene84455 | 0.907955 | 2.89E-81 | -1.69E-46 |
| MS.gene053058 | MS.gene84455 | 0.821941 | 3.09E-53 | -1.69E-46 |
| MS.gene053080 | MS.gene84455 | 0.804103 | 2.54E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene84455 | 0.837015 | 6.67E-57 | -1.69E-46 |
| MS.gene053122 | MS.gene84455 | 0.823787 | 1.15E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene84455 | 0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene84455 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene84455 | 0.804 | 2.66E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene84455 | 0.815655 | 8.27E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene84455 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene84455 | 0.821132 | 4.75E-53 | -1.69E-46 |
| MS.gene054937 | MS.gene84455 | 0.819349 | 1.22E-52 | -1.69E-46 |
| MS.gene055162 | MS.gene84455 | 0.835836 | 1.33E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene84455 | 0.845929 | 2.99E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene84455 | 0.806928 | 6.48E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene84455 | 0.816326 | 5.86E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene84455 | 0.844407 | 7.71E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene84455 | -0.831008 | 2.13E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene84455 | 0.869486 | 2.99E-66 | -1.69E-46 |
| MS.gene056043 | MS.gene84455 | -0.837033 | 6.60E-57 | -1.69E-46 |
| MS.gene056075 | MS.gene84455 | 0.865229 | 6.87E-65 | -1.69E-46 |
| MS.gene056091 | MS.gene84455 | 0.854708 | 1.03E-61 | -1.69E-46 |
| MS.gene056215 | MS.gene84455 | 0.818407 | 1.99E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene84455 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene84455 | 0.82465 | 7.20E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene84455 | 0.830173 | 3.41E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene84455 | 0.898218 | 6.58E-77 | -1.69E-46 |
| MS.gene056760 | MS.gene84455 | 0.811389 | 7.17E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene84455 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene84455 | 0.842737 | 2.15E-58 | -1.69E-46 |
| MS.gene057060 | MS.gene84455 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene84455 | 0.805137 | 1.54E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene84455 | 0.868411 | 6.66E-66 | -1.69E-46 |
| MS.gene057140 | MS.gene84455 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene84455 | 0.85822 | 9.56E-63 | -1.69E-46 |
| MS.gene057555 | MS.gene84455 | 0.812022 | 5.23E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene84455 | 0.823541 | 1.31E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene84455 | 0.919815 | 2.81E-87 | -1.69E-46 |
| MS.gene05781 | MS.gene84455 | 0.818362 | 2.04E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene84455 | 0.820264 | 7.52E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene84455 | 0.848057 | 7.81E-60 | -1.69E-46 |
| MS.gene058074 | MS.gene84455 | 0.806251 | 9.01E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene84455 | 0.818292 | 2.12E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene84455 | 0.864267 | 1.37E-64 | -1.69E-46 |
| MS.gene058852 | MS.gene84455 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene84455 | 0.865192 | 7.06E-65 | -1.69E-46 |
| MS.gene059146 | MS.gene84455 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene84455 | 0.810324 | 1.22E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene84455 | 0.828415 | 9.11E-55 | -1.69E-46 |
| MS.gene059726 | MS.gene84455 | 0.806133 | 9.54E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene84455 | 0.8251 | 5.63E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene84455 | 0.823123 | 1.64E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene84455 | 0.922391 | 1.05E-88 | -1.69E-46 |
| MS.gene06011 | MS.gene84455 | 0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene84455 | 0.890935 | 6.28E-74 | -1.69E-46 |
| MS.gene060586 | MS.gene84455 | 0.813732 | 2.21E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene84455 | 0.819942 | 8.91E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene84455 | 0.806964 | 6.37E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene84455 | 0.834427 | 3.02E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene84455 | 0.820963 | 5.20E-53 | -1.69E-46 |
| MS.gene060917 | MS.gene84455 | 0.847685 | 9.89E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013335 | MS.gene84455 | PPI |
| MS.gene23040 | MS.gene84455 | PPI |
| MS.gene30990 | MS.gene84455 | PPI |
| MS.gene06433 | MS.gene84455 | PPI |
| MS.gene049306 | MS.gene84455 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84455.t1 | MTR_7g053450 | 99.524 | 210 | 1 | 0 | 1 | 210 | 8 | 217 | 2.81e-154 | 426 |
| MS.gene84455.t1 | MTR_8g012330 | 87.500 | 208 | 26 | 0 | 3 | 210 | 81 | 288 | 1.13e-127 | 362 |
| MS.gene84455.t1 | MTR_4g016670 | 86.979 | 192 | 25 | 0 | 19 | 210 | 26 | 217 | 6.39e-122 | 344 |
| MS.gene84455.t1 | MTR_8g012325 | 90.952 | 210 | 17 | 1 | 1 | 210 | 8 | 215 | 2.91e-121 | 342 |
| MS.gene84455.t1 | MTR_4g016663 | 74.699 | 83 | 20 | 1 | 129 | 210 | 5 | 87 | 9.54e-37 | 124 |
| MS.gene84455.t1 | MTR_4g016610 | 59.524 | 84 | 18 | 1 | 127 | 210 | 1042 | 1109 | 2.44e-21 | 92.0 |
| MS.gene84455.t1 | MTR_4g016620 | 67.797 | 59 | 19 | 0 | 128 | 186 | 20 | 78 | 2.86e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84455.t1 | AT5G59240 | 84.848 | 198 | 21 | 1 | 1 | 198 | 8 | 196 | 4.94e-122 | 344 |
| MS.gene84455.t1 | AT5G20290 | 80.930 | 215 | 36 | 1 | 1 | 210 | 8 | 222 | 3.43e-105 | 302 |
Find 54 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTCTGTGGAATCCTTCT+TGG | 0.268962 | 7.4:-49635137 | None:intergenic |
| GACTCGCAAGACTCGTCTTC+TGG | 0.273540 | 7.4:+49634967 | MS.gene84455:CDS |
| CTCGCCCTGGTCAATGTGGC+AGG | 0.353391 | 7.4:+49635927 | MS.gene84455:CDS |
| GGTCAATGTGGCAGGGCTGA+TGG | 0.387861 | 7.4:+49635935 | MS.gene84455:CDS |
| TTGAGCAGCGTCAGAAAGAT+AGG | 0.420260 | 7.4:+49635843 | MS.gene84455:CDS |
| CTAGACAGCTTAGTGTTGGC+TGG | 0.421456 | 7.4:-49634845 | None:intergenic |
| GTCAATGTGGCAGGGCTGAT+GGG | 0.439498 | 7.4:+49635936 | MS.gene84455:CDS |
| GTCAGGAGGATCCGTGTTAG+AGG | 0.444512 | 7.4:+49634878 | MS.gene84455:CDS |
| TCCAACAGGTACATTCTTGA+AGG | 0.455732 | 7.4:+49636044 | MS.gene84455:intron |
| CAAGACTCGTCTTCTGGATG+TGG | 0.457895 | 7.4:+49634973 | MS.gene84455:CDS |
| ACGAACAAGCTCATTGTTTG+AGG | 0.460749 | 7.4:-49635005 | None:intergenic |
| GCCTGCATTTCATCTCGCCC+TGG | 0.462140 | 7.4:+49635914 | MS.gene84455:CDS |
| ACAGCTTAGTGTTGGCTGGC+TGG | 0.467973 | 7.4:-49634841 | None:intergenic |
| TCCCACATCGAAGAGCAGTT+TGG | 0.472868 | 7.4:+49635875 | MS.gene84455:CDS |
| TCAGCCCTGCCACATTGACC+AGG | 0.474891 | 7.4:-49635932 | None:intergenic |
| CAGGTACATTCTTGAAGGTA+AGG | 0.479114 | 7.4:+49636049 | MS.gene84455:intron |
| TGTCTAGCAACAAGACAGTC+AGG | 0.484105 | 7.4:+49634861 | MS.gene84455:CDS |
| ATGCACAAGAGGCGTGCCAC+TGG | 0.486837 | 7.4:+49633640 | MS.gene84455:CDS |
| CATTCTTGAAGGTAAGGAGT+TGG | 0.488645 | 7.4:+49636055 | MS.gene84455:CDS |
| TGAAGATACCACTGCTTGAA+TGG | 0.502756 | 7.4:-49635073 | None:intergenic |
| GCTTGTTCGTACTCAGACTC+TGG | 0.506342 | 7.4:+49635018 | MS.gene84455:CDS |
| GTTGCTAGACAGCTTAGTGT+TGG | 0.512620 | 7.4:-49634849 | None:intergenic |
| TTAGAGGTGGCAATGTGAAA+TGG | 0.513214 | 7.4:+49634894 | MS.gene84455:CDS |
| CAGCACTACGGTGTTGAAGT+TGG | 0.523099 | 7.4:+49635094 | MS.gene84455:CDS |
| ATCGAAGAGCAGTTTGGTGG+TGG | 0.523210 | 7.4:+49635881 | MS.gene84455:CDS |
| GAAATGGAGAGCTCTTAGAT+TGG | 0.523645 | 7.4:+49634910 | MS.gene84455:CDS |
| CTGGTGGCAAGAAGAAGAGC+TGG | 0.534252 | 7.4:+49633659 | MS.gene84455:CDS |
| TGAATGGTGCAGCATCAACT+TGG | 0.539497 | 7.4:-49635057 | None:intergenic |
| GCTCTTCTTCTTGCCACCAG+TGG | 0.539638 | 7.4:-49633656 | None:intergenic |
| CACATCGAAGAGCAGTTTGG+TGG | 0.547653 | 7.4:+49635878 | MS.gene84455:CDS |
| AAAGAAAACAGCAGCCAAGA+AGG | 0.547923 | 7.4:+49635123 | MS.gene84455:CDS |
| TCGCCCTGGTCAATGTGGCA+GGG | 0.554881 | 7.4:+49635928 | MS.gene84455:CDS |
| ACCAGGGCGAGATGAAATGC+AGG | 0.557367 | 7.4:-49635915 | None:intergenic |
| AGTGGCACGCCTCTTGTGCA+TGG | 0.560948 | 7.4:-49633638 | None:intergenic |
| TGCAGCATCAACTTGGACAA+TGG | 0.565135 | 7.4:-49635050 | None:intergenic |
| ACCAAACTGCTCTTCGATGT+GGG | 0.568455 | 7.4:-49635876 | None:intergenic |
| CACCAAACTGCTCTTCGATG+TGG | 0.574855 | 7.4:-49635877 | None:intergenic |
| CACAAGAGGCGTGCCACTGG+TGG | 0.589648 | 7.4:+49633643 | MS.gene84455:CDS |
| TCACATTGCCACCTCTAACA+CGG | 0.596796 | 7.4:-49634889 | None:intergenic |
| AAATTTCTCGTGGGGTAGTG+AGG | 0.601685 | 7.4:+49634940 | MS.gene84455:CDS |
| CAGTGGTATCTTCAGCACTA+CGG | 0.606289 | 7.4:+49635082 | MS.gene84455:CDS |
| TGGACACTGGAAATTTCTCG+TGG | 0.606783 | 7.4:+49634930 | MS.gene84455:CDS |
| GGACACTGGAAATTTCTCGT+GGG | 0.613954 | 7.4:+49634931 | MS.gene84455:CDS |
| GACACTGGAAATTTCTCGTG+GGG | 0.616779 | 7.4:+49634932 | MS.gene84455:CDS |
| CAGCCCTGCCACATTGACCA+GGG | 0.623121 | 7.4:-49635931 | None:intergenic |
| AGGAGGATCCGTGTTAGAGG+TGG | 0.633660 | 7.4:+49634881 | MS.gene84455:CDS |
| CTAGGGATTCCATGCACAAG+AGG | 0.633798 | 7.4:+49633629 | None:intergenic |
| TTCCAAAACTATCACCTCTG+TGG | 0.639522 | 7.4:-49635149 | None:intergenic |
| ATGCTGCACCATTCAAGCAG+TGG | 0.644432 | 7.4:+49635065 | MS.gene84455:CDS |
| TCATCTCGCCCTGGTCAATG+TGG | 0.644879 | 7.4:+49635923 | MS.gene84455:CDS |
| ACTACGGTGTTGAAGTTGGT+AGG | 0.661832 | 7.4:+49635098 | MS.gene84455:CDS |
| AGAGCTCTTAGATTGGACAC+TGG | 0.691283 | 7.4:+49634917 | MS.gene84455:CDS |
| AGCCAAGAAGGATTCCACAG+AGG | 0.726939 | 7.4:+49635135 | MS.gene84455:CDS |
| CTAGCAACAAGACAGTCAGG+AGG | 0.730674 | 7.4:+49634864 | MS.gene84455:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAACAATTAAAATTAAT+GGG | - | chr7.4:49634774-49634793 | None:intergenic | 15.0% |
| !! | ATAACTTATTATACCATTAA+GGG | + | chr7.4:49635653-49635672 | MS.gene84455:intron | 15.0% |
| !! | TAGAGAACAATTAAAATTAA+TGG | - | chr7.4:49634775-49634794 | None:intergenic | 15.0% |
| !! | TATAACTTATTATACCATTA+AGG | + | chr7.4:49635652-49635671 | MS.gene84455:intron | 15.0% |
| !! | TATTATTCATAAGTTTGTAA+AGG | - | chr7.4:49634194-49634213 | None:intergenic | 15.0% |
| !! | TCAAAGATAAATATTTGAAA+AGG | - | chr7.4:49635280-49635299 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCTAATCAA+AGG | - | chr7.4:49634697-49634716 | None:intergenic | 15.0% |
| !! | TGATTAGATTATAATTTGAA+TGG | + | chr7.4:49634698-49634717 | MS.gene84455:intron | 15.0% |
| !!! | ATATATTTTGTGTTTCTTAA+TGG | + | chr7.4:49635360-49635379 | MS.gene84455:intron | 15.0% |
| !!! | TAATTTAAGTTTTCATTTTG+TGG | + | chr7.4:49635676-49635695 | MS.gene84455:intron | 15.0% |
| !!! | TTAATAATTTTATTAGAGAG+AGG | - | chr7.4:49633712-49633731 | None:intergenic | 15.0% |
| !! | AAAACTTAAATTACCCTTAA+TGG | - | chr7.4:49635669-49635688 | None:intergenic | 20.0% |
| !! | AAATCCTAATCATATTTAAC+AGG | - | chr7.4:49634663-49634682 | None:intergenic | 20.0% |
| !! | AAGAAATTACAGAAAAAGAA+GGG | + | chr7.4:49636089-49636108 | MS.gene84455:CDS | 20.0% |
| !! | ATATTGATCAAAATACATAG+AGG | + | chr7.4:49634553-49634572 | MS.gene84455:intron | 20.0% |
| !! | ATCTTTATATGAATAACCTA+TGG | + | chr7.4:49635532-49635551 | MS.gene84455:intron | 20.0% |
| !! | ATTTATGTCTTTCAGTATTA+AGG | + | chr7.4:49633850-49633869 | MS.gene84455:intron | 20.0% |
| !! | GAGAACAATTAAAATTAATG+GGG | - | chr7.4:49634773-49634792 | None:intergenic | 20.0% |
| !! | TAGGTTATTCATATAAAGAT+TGG | - | chr7.4:49635532-49635551 | None:intergenic | 20.0% |
| !! | TTTGTACTTCATTATTCAAA+TGG | + | chr7.4:49633778-49633797 | MS.gene84455:intron | 20.0% |
| !!! | CTTTAAGTTATCACTTTAAT+TGG | + | chr7.4:49635456-49635475 | MS.gene84455:intron | 20.0% |
| !!! | TAGGCTTATTGTTTTTTTAT+TGG | + | chr7.4:49635337-49635356 | MS.gene84455:intron | 20.0% |
| !!! | TATGTTTAGTTTACCATTAA+GGG | + | chr7.4:49635430-49635449 | MS.gene84455:intron | 20.0% |
| !!! | TTTCATTTTGTGGATTAAAT+TGG | + | chr7.4:49635686-49635705 | MS.gene84455:intron | 20.0% |
| ! | AAAAATTAAGACAGTCCATA+CGG | - | chr7.4:49634065-49634084 | None:intergenic | 25.0% |
| ! | AAAATAAAAAAACCATCCAC+AGG | - | chr7.4:49635229-49635248 | None:intergenic | 25.0% |
| ! | AAAGAATGACAACTTGAAAA+CGG | - | chr7.4:49634640-49634659 | None:intergenic | 25.0% |
| ! | AAATGATAATTTCCCCTTAA+TGG | - | chr7.4:49635561-49635580 | None:intergenic | 25.0% |
| ! | ACAACACAAACATATATAAC+AGG | - | chr7.4:49635180-49635199 | None:intergenic | 25.0% |
| ! | ATGATATATGCTTTCAGTTA+TGG | + | chr7.4:49635200-49635219 | MS.gene84455:intron | 25.0% |
| ! | CGATATATAATCATCTCAAT+AGG | - | chr7.4:49634586-49634605 | None:intergenic | 25.0% |
| ! | CTTAATGGTAAACTAAACAT+AGG | - | chr7.4:49635431-49635450 | None:intergenic | 25.0% |
| ! | CTTTCCTGTTAAATATGATT+AGG | + | chr7.4:49634656-49634675 | MS.gene84455:intron | 25.0% |
| ! | GAAGAAATTACAGAAAAAGA+AGG | + | chr7.4:49636088-49636107 | MS.gene84455:CDS | 25.0% |
| ! | GGAGTTTACTAAAATATAAG+CGG | - | chr7.4:49635983-49636002 | None:intergenic | 25.0% |
| !! | AATAAGCTTTTTATCCAAAC+AGG | - | chr7.4:49633877-49633896 | None:intergenic | 25.0% |
| !! | AGCTTATGAAGATACAATTT+TGG | - | chr7.4:49634155-49634174 | None:intergenic | 25.0% |
| !! | ATAAGCTTTTTATCCAAACA+GGG | - | chr7.4:49633876-49633895 | None:intergenic | 25.0% |
| !! | ATGTTTAGTTTACCATTAAG+GGG | + | chr7.4:49635431-49635450 | MS.gene84455:intron | 25.0% |
| !! | CTATGTTTAGTTTACCATTA+AGG | + | chr7.4:49635429-49635448 | MS.gene84455:intron | 25.0% |
| !! | CTTTTCAAAACATACCATTA+AGG | - | chr7.4:49635496-49635515 | None:intergenic | 25.0% |
| !! | TAATCTGTTTGTTAAAACTC+AGG | + | chr7.4:49634336-49634355 | MS.gene84455:intron | 25.0% |
| !!! | AGTTTTAACAAACAGATTAG+GGG | - | chr7.4:49634335-49634354 | None:intergenic | 25.0% |
| !!! | GAGTTTTAACAAACAGATTA+GGG | - | chr7.4:49634336-49634355 | None:intergenic | 25.0% |
| !!! | GGGGAAATTATCATTTTTAT+TGG | + | chr7.4:49635565-49635584 | MS.gene84455:intron | 25.0% |
| !!! | TAAGTTTAAGTTGTTTTCGT+TGG | + | chr7.4:49634793-49634812 | MS.gene84455:intron | 25.0% |
| !!! | TAATTTGTTCCACTCTTTAT+AGG | + | chr7.4:49635401-49635420 | MS.gene84455:intron | 25.0% |
| !!! | TGAGTTTTAACAAACAGATT+AGG | - | chr7.4:49634337-49634356 | None:intergenic | 25.0% |
| !!! | TGCTATAAGTTGTTTTCAAA+TGG | + | chr7.4:49633957-49633976 | MS.gene84455:intron | 25.0% |
| !!! | TTGTTTGCTATTGTAGATTA+TGG | + | chr7.4:49633810-49633829 | MS.gene84455:intron | 25.0% |
| !!! | TTTTTCTTTTGATTTCCAAC+AGG | + | chr7.4:49636030-49636049 | MS.gene84455:intron | 25.0% |
| AAAATTAAGACAGTCCATAC+GGG | - | chr7.4:49634064-49634083 | None:intergenic | 30.0% | |
| ATAACCTATGGTTACCATTA+AGG | + | chr7.4:49635544-49635563 | MS.gene84455:intron | 30.0% | |
| ATACACCAGAAAACTAATTC+AGG | - | chr7.4:49634435-49634454 | None:intergenic | 30.0% | |
| ATAGGTTATCCTATAAAGAG+TGG | - | chr7.4:49635413-49635432 | None:intergenic | 30.0% | |
| ATATATGCTTTCAGTTATGG+TGG | + | chr7.4:49635203-49635222 | MS.gene84455:intron | 30.0% | |
| ATGTATTCTGTGTTCCTTAA+TGG | + | chr7.4:49635479-49635498 | MS.gene84455:intron | 30.0% | |
| GTGAACACTAAAAACAAAGA+TGG | - | chr7.4:49636004-49636023 | None:intergenic | 30.0% | |
| TAACCTATGGTTACCATTAA+GGG | + | chr7.4:49635545-49635564 | MS.gene84455:intron | 30.0% | |
| TACACCAGAAAACTAATTCA+GGG | - | chr7.4:49634434-49634453 | None:intergenic | 30.0% | |
| TCGAAAAACAAAAAACAAGC+TGG | - | chr7.4:49633756-49633775 | None:intergenic | 30.0% | |
| TGTATGTCATTATTCATTCC+TGG | + | chr7.4:49634450-49634469 | MS.gene84455:intron | 30.0% | |
| TTCATTCCTGGAATTATGTA+TGG | + | chr7.4:49634462-49634481 | MS.gene84455:intron | 30.0% | |
| ! | ATCTTTTGAATTGAACATCC+AGG | + | chr7.4:49635766-49635785 | MS.gene84455:intron | 30.0% |
| ! | TAACTTAAAGTACCCCTTAA+TGG | - | chr7.4:49635446-49635465 | None:intergenic | 30.0% |
| ! | TAATCTAATCAAAGGTACGA+TGG | - | chr7.4:49634689-49634708 | None:intergenic | 30.0% |
| ! | TAGTTTGCATAAGTTCACAT+AGG | + | chr7.4:49634038-49634057 | MS.gene84455:intron | 30.0% |
| ! | TTGCTATTGTAGATTATGGA+TGG | + | chr7.4:49633814-49633833 | MS.gene84455:intron | 30.0% |
| !! | GTTGTTTTCAAATGGTATCT+CGG | + | chr7.4:49633965-49633984 | MS.gene84455:intron | 30.0% |
| !!! | TGTTTTCGTTGGTTTTGTAT+AGG | + | chr7.4:49634804-49634823 | MS.gene84455:intron | 30.0% |
| AACCTATGGTTACCATTAAG+GGG | + | chr7.4:49635546-49635565 | MS.gene84455:intron | 35.0% | |
| ACTACTACATAGTAGAATGC+AGG | - | chr7.4:49635712-49635731 | None:intergenic | 35.0% | |
| ACTATGCCATACATAATTCC+AGG | - | chr7.4:49634471-49634490 | None:intergenic | 35.0% | |
| CTAAAATATAAGCGGAGACA+AGG | - | chr7.4:49635975-49635994 | None:intergenic | 35.0% | |
| TGAAATTGTAAGTCTGTGCT+AGG | + | chr7.4:49635318-49635337 | MS.gene84455:intron | 35.0% | |
| ! | TTTTGAATTGAACATCCAGG+AGG | + | chr7.4:49635769-49635788 | MS.gene84455:intron | 35.0% |
| !! | CTGTTTGGATTGGCTTATTT+GGG | - | chr7.4:49634311-49634330 | None:intergenic | 35.0% |
| AAAGAAAACAGCAGCCAAGA+AGG | + | chr7.4:49635123-49635142 | MS.gene84455:CDS | 40.0% | |
| ACCAGAAAACTAATTCAGGG+TGG | - | chr7.4:49634431-49634450 | None:intergenic | 40.0% | |
| ACCTTCAAGAATGTACCTGT+TGG | - | chr7.4:49636048-49636067 | None:intergenic | 40.0% | |
| ACGAACAAGCTCATTGTTTG+AGG | - | chr7.4:49635008-49635027 | None:intergenic | 40.0% | |
| ACGTTATGTGAGACTGTTTG+AGG | - | chr7.4:49634273-49634292 | None:intergenic | 40.0% | |
| CAGGTACATTCTTGAAGGTA+AGG | + | chr7.4:49636049-49636068 | MS.gene84455:intron | 40.0% | |
| CATTCTTGAAGGTAAGGAGT+TGG | + | chr7.4:49636055-49636074 | MS.gene84455:CDS | 40.0% | |
| CCAAATAAGCCAATCCAAAC+AGG | + | chr7.4:49634309-49634328 | MS.gene84455:intron | 40.0% | |
| CGTTATGTGAGACTGTTTGA+GGG | - | chr7.4:49634272-49634291 | None:intergenic | 40.0% | |
| GAAATGGAGAGCTCTTAGAT+TGG | + | chr7.4:49634910-49634929 | MS.gene84455:CDS | 40.0% | |
| TCCAACAGGTACATTCTTGA+AGG | + | chr7.4:49636044-49636063 | MS.gene84455:intron | 40.0% | |
| TGAAGATACCACTGCTTGAA+TGG | - | chr7.4:49635076-49635095 | None:intergenic | 40.0% | |
| TTAGAGGTGGCAATGTGAAA+TGG | + | chr7.4:49634894-49634913 | MS.gene84455:CDS | 40.0% | |
| TTCAGTATTAAGGCCCTGTT+TGG | + | chr7.4:49633860-49633879 | MS.gene84455:intron | 40.0% | |
| TTCCAAAACTATCACCTCTG+TGG | - | chr7.4:49635152-49635171 | None:intergenic | 40.0% | |
| TTCCCCTTAATGGTAACCAT+AGG | - | chr7.4:49635551-49635570 | None:intergenic | 40.0% | |
| ! | GTTTTGTATAGGTACGAGCT+TGG | + | chr7.4:49634815-49634834 | MS.gene84455:intron | 40.0% |
| ! | TTCCACAGAGGTGATAGTTT+TGG | + | chr7.4:49635147-49635166 | MS.gene84455:intron | 40.0% |
| !! | CCTGTTTGGATTGGCTTATT+TGG | - | chr7.4:49634312-49634331 | None:intergenic | 40.0% |
| AAACAGATTAGGGGCCTGTT+TGG | - | chr7.4:49634326-49634345 | None:intergenic | 45.0% | |
| AAATTTCTCGTGGGGTAGTG+AGG | + | chr7.4:49634940-49634959 | MS.gene84455:CDS | 45.0% | |
| ACCAAACTGCTCTTCGATGT+GGG | - | chr7.4:49635879-49635898 | None:intergenic | 45.0% | |
| AGAGCTCTTAGATTGGACAC+TGG | + | chr7.4:49634917-49634936 | MS.gene84455:CDS | 45.0% | |
| CAGTGGTATCTTCAGCACTA+CGG | + | chr7.4:49635082-49635101 | MS.gene84455:CDS | 45.0% | |
| GACACTGGAAATTTCTCGTG+GGG | + | chr7.4:49634932-49634951 | MS.gene84455:CDS | 45.0% | |
| GGACACTGGAAATTTCTCGT+GGG | + | chr7.4:49634931-49634950 | MS.gene84455:CDS | 45.0% | |
| GTTGCTAGACAGCTTAGTGT+TGG | - | chr7.4:49634852-49634871 | None:intergenic | 45.0% | |
| TAAGTTCACATAGGCCCGTA+TGG | + | chr7.4:49634047-49634066 | MS.gene84455:intron | 45.0% | |
| TCACATTGCCACCTCTAACA+CGG | - | chr7.4:49634892-49634911 | None:intergenic | 45.0% | |
| TGAATGGTGCAGCATCAACT+TGG | - | chr7.4:49635060-49635079 | None:intergenic | 45.0% | |
| TGCAGCATCAACTTGGACAA+TGG | - | chr7.4:49635053-49635072 | None:intergenic | 45.0% | |
| TGGACACTGGAAATTTCTCG+TGG | + | chr7.4:49634930-49634949 | MS.gene84455:CDS | 45.0% | |
| TGTCTAGCAACAAGACAGTC+AGG | + | chr7.4:49634861-49634880 | MS.gene84455:CDS | 45.0% | |
| TTGAGCAGCGTCAGAAAGAT+AGG | + | chr7.4:49635843-49635862 | MS.gene84455:CDS | 45.0% | |
| TTGTTCTCATTGTGCTCCCT+TGG | + | chr7.4:49634379-49634398 | MS.gene84455:intron | 45.0% | |
| ! | ACTACGGTGTTGAAGTTGGT+AGG | + | chr7.4:49635098-49635117 | MS.gene84455:CDS | 45.0% |
| !!! | GCCACCCTGAATTAGTTTTC+TGG | + | chr7.4:49634427-49634446 | MS.gene84455:intron | 45.0% |
| AAGACAAGCTCGTCCAACCA+AGG | - | chr7.4:49634399-49634418 | None:intergenic | 50.0% | |
| AGACAAGCTCGTCCAACCAA+GGG | - | chr7.4:49634398-49634417 | None:intergenic | 50.0% | |
| AGCCAAGAAGGATTCCACAG+AGG | + | chr7.4:49635135-49635154 | MS.gene84455:CDS | 50.0% | |
| ATGCTGCACCATTCAAGCAG+TGG | + | chr7.4:49635065-49635084 | MS.gene84455:CDS | 50.0% | |
| CAAGACTCGTCTTCTGGATG+TGG | + | chr7.4:49634973-49634992 | MS.gene84455:CDS | 50.0% | |
| CACATCGAAGAGCAGTTTGG+TGG | + | chr7.4:49635878-49635897 | MS.gene84455:CDS | 50.0% | |
| CACCAAACTGCTCTTCGATG+TGG | - | chr7.4:49635880-49635899 | None:intergenic | 50.0% | |
| CACCTCTGTGGAATCCTTCT+TGG | - | chr7.4:49635140-49635159 | None:intergenic | 50.0% | |
| CTAGCAACAAGACAGTCAGG+AGG | + | chr7.4:49634864-49634883 | MS.gene84455:CDS | 50.0% | |
| CTTTCAGTTATGGTGGCCTG+TGG | + | chr7.4:49635210-49635229 | MS.gene84455:intron | 50.0% | |
| GAGACTGTTTGAGGGCCTTT+CGG | - | chr7.4:49634264-49634283 | None:intergenic | 50.0% | |
| GATTAGGGGCCTGTTTGGAT+TGG | - | chr7.4:49634321-49634340 | None:intergenic | 50.0% | |
| GCTTGTTCGTACTCAGACTC+TGG | + | chr7.4:49635018-49635037 | MS.gene84455:CDS | 50.0% | |
| TCCCACATCGAAGAGCAGTT+TGG | + | chr7.4:49635875-49635894 | MS.gene84455:CDS | 50.0% | |
| TCTCATTGTGCTCCCTTGGT+TGG | + | chr7.4:49634383-49634402 | MS.gene84455:intron | 50.0% | |
| TGTTTGAGGGCCTTTCGGAT+TGG | - | chr7.4:49634259-49634278 | None:intergenic | 50.0% | |
| ! | ATCGAAGAGCAGTTTGGTGG+TGG | + | chr7.4:49635881-49635900 | MS.gene84455:CDS | 50.0% |
| ! | CAGCACTACGGTGTTGAAGT+TGG | + | chr7.4:49635094-49635113 | MS.gene84455:CDS | 50.0% |
| ! | GCTCAAGTTTTCTCTGCACG+TGG | - | chr7.4:49635829-49635848 | None:intergenic | 50.0% |
| !! | CTAGACAGCTTAGTGTTGGC+TGG | - | chr7.4:49634848-49634867 | None:intergenic | 50.0% |
| ACCAGGGCGAGATGAAATGC+AGG | - | chr7.4:49635918-49635937 | None:intergenic | 55.0% | |
| AGGAGGATCCGTGTTAGAGG+TGG | + | chr7.4:49634881-49634900 | MS.gene84455:CDS | 55.0% | |
| CAGCAACAACTTCAGCCTCC+TGG | - | chr7.4:49635787-49635806 | None:intergenic | 55.0% | |
| CAGTTATGGTGGCCTGTGGA+TGG | + | chr7.4:49635214-49635233 | MS.gene84455:intron | 55.0% | |
| CTGGTGGCAAGAAGAAGAGC+TGG | + | chr7.4:49633659-49633678 | MS.gene84455:CDS | 55.0% | |
| GACTCGCAAGACTCGTCTTC+TGG | + | chr7.4:49634967-49634986 | MS.gene84455:CDS | 55.0% | |
| GCTCTTCTTCTTGCCACCAG+TGG | - | chr7.4:49633659-49633678 | None:intergenic | 55.0% | |
| GTCAATGTGGCAGGGCTGAT+GGG | + | chr7.4:49635936-49635955 | MS.gene84455:CDS | 55.0% | |
| GTCAGGAGGATCCGTGTTAG+AGG | + | chr7.4:49634878-49634897 | MS.gene84455:CDS | 55.0% | |
| TCATCTCGCCCTGGTCAATG+TGG | + | chr7.4:49635923-49635942 | MS.gene84455:CDS | 55.0% | |
| TGCCTAAGCGCCAATCCGAA+AGG | + | chr7.4:49634246-49634265 | MS.gene84455:intron | 55.0% | |
| !! | ACAGCTTAGTGTTGGCTGGC+TGG | - | chr7.4:49634844-49634863 | None:intergenic | 55.0% |
| CAGCCCTGCCACATTGACCA+GGG | - | chr7.4:49635934-49635953 | None:intergenic | 60.0% | |
| GCCTGCATTTCATCTCGCCC+TGG | + | chr7.4:49635914-49635933 | MS.gene84455:CDS | 60.0% | |
| GGTCAATGTGGCAGGGCTGA+TGG | + | chr7.4:49635935-49635954 | MS.gene84455:CDS | 60.0% | |
| TCAGCCCTGCCACATTGACC+AGG | - | chr7.4:49635935-49635954 | None:intergenic | 60.0% | |
| TCGCCCTGGTCAATGTGGCA+GGG | + | chr7.4:49635928-49635947 | MS.gene84455:CDS | 60.0% | |
| ! | ATGCACAAGAGGCGTGCCAC+TGG | + | chr7.4:49633640-49633659 | MS.gene84455:CDS | 60.0% |
| !! | GGCCTTTCGGATTGGCGCTT+AGG | - | chr7.4:49634251-49634270 | None:intergenic | 60.0% |
| CTCGCCCTGGTCAATGTGGC+AGG | + | chr7.4:49635927-49635946 | MS.gene84455:CDS | 65.0% | |
| ! | CACAAGAGGCGTGCCACTGG+TGG | + | chr7.4:49633643-49633662 | MS.gene84455:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 49633640 | 49636127 | 49633640 | ID=MS.gene84455 |
| chr7.4 | mRNA | 49633640 | 49636127 | 49633640 | ID=MS.gene84455.t1;Parent=MS.gene84455 |
| chr7.4 | exon | 49633640 | 49633695 | 49633640 | ID=MS.gene84455.t1.exon1;Parent=MS.gene84455.t1 |
| chr7.4 | CDS | 49633640 | 49633695 | 49633640 | ID=cds.MS.gene84455.t1;Parent=MS.gene84455.t1 |
| chr7.4 | exon | 49634826 | 49635156 | 49634826 | ID=MS.gene84455.t1.exon2;Parent=MS.gene84455.t1 |
| chr7.4 | CDS | 49634826 | 49635156 | 49634826 | ID=cds.MS.gene84455.t1;Parent=MS.gene84455.t1 |
| chr7.4 | exon | 49635788 | 49635957 | 49635788 | ID=MS.gene84455.t1.exon3;Parent=MS.gene84455.t1 |
| chr7.4 | CDS | 49635788 | 49635957 | 49635788 | ID=cds.MS.gene84455.t1;Parent=MS.gene84455.t1 |
| chr7.4 | exon | 49636052 | 49636127 | 49636052 | ID=MS.gene84455.t1.exon4;Parent=MS.gene84455.t1 |
| chr7.4 | CDS | 49636052 | 49636127 | 49636052 | ID=cds.MS.gene84455.t1;Parent=MS.gene84455.t1 |
| Gene Sequence |
| Protein sequence |
