Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36154.t1 | XP_003622604.2 | 92.9 | 877 | 62 | 0 | 1 | 877 | 1 | 877 | 0.00E+00 | 1384.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36154.t1 | Q8RXD6 | 44.8 | 880 | 481 | 4 | 1 | 877 | 1 | 878 | 1.3e-189 | 664.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36154.t1 | G7KUW6 | 92.9 | 877 | 62 | 0 | 1 | 877 | 1 | 877 | 0.0e+00 | 1384.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36154 | 0.831711 | 1.43E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene36154 | 0.836194 | 1.08E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene36154 | 0.829728 | 4.38E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene36154 | 0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene36154 | 0.814366 | 1.60E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene36154 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene36154 | 0.819576 | 1.08E-52 | -1.69E-46 |
| MS.gene049419 | MS.gene36154 | -0.839963 | 1.16E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene36154 | 0.823657 | 1.23E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene36154 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene36154 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene36154 | 0.804941 | 1.70E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene36154 | 0.824073 | 9.84E-54 | -1.69E-46 |
| MS.gene049958 | MS.gene36154 | 0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene36154 | 0.869259 | 3.54E-66 | -1.69E-46 |
| MS.gene050105 | MS.gene36154 | 0.868208 | 7.75E-66 | -1.69E-46 |
| MS.gene050361 | MS.gene36154 | 0.822367 | 2.46E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene36154 | 0.8387 | 2.46E-57 | -1.69E-46 |
| MS.gene050556 | MS.gene36154 | 0.800535 | 1.38E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene36154 | -0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene36154 | 0.869755 | 2.44E-66 | -1.69E-46 |
| MS.gene050737 | MS.gene36154 | 0.837827 | 4.13E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene36154 | 0.824505 | 7.78E-54 | -1.69E-46 |
| MS.gene050826 | MS.gene36154 | 0.809731 | 1.64E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene36154 | 0.847919 | 8.52E-60 | -1.69E-46 |
| MS.gene050962 | MS.gene36154 | 0.812104 | 5.02E-51 | -1.69E-46 |
| MS.gene051066 | MS.gene36154 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene051122 | MS.gene36154 | 0.870524 | 1.37E-66 | -1.69E-46 |
| MS.gene051147 | MS.gene36154 | 0.828769 | 7.48E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene36154 | 0.814133 | 1.80E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene36154 | 0.814862 | 1.24E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene36154 | 0.813774 | 2.16E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene36154 | 0.815001 | 1.16E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene36154 | 0.830405 | 2.99E-55 | -1.69E-46 |
| MS.gene051490 | MS.gene36154 | 0.814622 | 1.40E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene36154 | 0.827851 | 1.24E-54 | -1.69E-46 |
| MS.gene051655 | MS.gene36154 | 0.807205 | 5.66E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene36154 | 0.840505 | 8.35E-58 | -1.69E-46 |
| MS.gene051924 | MS.gene36154 | -0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene051935 | MS.gene36154 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene36154 | 0.814756 | 1.31E-51 | -1.69E-46 |
| MS.gene052052 | MS.gene36154 | 0.806633 | 7.48E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene36154 | 0.803468 | 3.44E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene36154 | 0.810383 | 1.18E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene36154 | 0.851742 | 7.28E-61 | -1.69E-46 |
| MS.gene052333 | MS.gene36154 | 0.816477 | 5.42E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene36154 | 0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene36154 | 0.82699 | 2.00E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene36154 | 0.817091 | 3.95E-52 | -1.69E-46 |
| MS.gene052493 | MS.gene36154 | 0.811822 | 5.78E-51 | -1.69E-46 |
| MS.gene052518 | MS.gene36154 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene36154 | 0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene36154 | 0.808754 | 2.65E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene36154 | 0.894128 | 3.30E-75 | -1.69E-46 |
| MS.gene052675 | MS.gene36154 | 0.891104 | 5.39E-74 | -1.69E-46 |
| MS.gene052677 | MS.gene36154 | 0.895434 | 9.62E-76 | -1.69E-46 |
| MS.gene052775 | MS.gene36154 | 0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene36154 | 0.811516 | 6.73E-51 | -1.69E-46 |
| MS.gene052932 | MS.gene36154 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene36154 | 0.821383 | 4.16E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene36154 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene05308 | MS.gene36154 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene36154 | 0.815485 | 9.02E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene36154 | 0.801375 | 9.28E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene36154 | 0.850912 | 1.25E-60 | -1.69E-46 |
| MS.gene053726 | MS.gene36154 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene36154 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene36154 | 0.820552 | 6.46E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene36154 | 0.813755 | 2.18E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene36154 | -0.805818 | 1.11E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene36154 | 0.800689 | 1.28E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene36154 | 0.814438 | 1.54E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene36154 | 0.958107 | 5.33E-116 | -1.69E-46 |
| MS.gene054489 | MS.gene36154 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene36154 | 0.809616 | 1.73E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene36154 | 0.800796 | 1.22E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene36154 | 0.816537 | 5.25E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene36154 | 0.816799 | 4.59E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene36154 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene05510 | MS.gene36154 | 0.823096 | 1.66E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene36154 | 0.804092 | 2.55E-49 | -1.69E-46 |
| MS.gene055222 | MS.gene36154 | 0.804568 | 2.03E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene36154 | 0.818796 | 1.63E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene36154 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene36154 | 0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene36154 | 0.825177 | 5.40E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene36154 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene36154 | 0.812551 | 4.00E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene36154 | 0.826772 | 2.26E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene36154 | 0.865916 | 4.17E-65 | -1.69E-46 |
| MS.gene055818 | MS.gene36154 | 0.815792 | 7.71E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene36154 | 0.848679 | 5.26E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene36154 | 0.865512 | 5.59E-65 | -1.69E-46 |
| MS.gene056045 | MS.gene36154 | 0.856929 | 2.31E-62 | -1.69E-46 |
| MS.gene056162 | MS.gene36154 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene36154 | 0.840278 | 9.57E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene36154 | 0.800951 | 1.13E-48 | -1.69E-46 |
| MS.gene056480 | MS.gene36154 | 0.872088 | 4.16E-67 | -1.69E-46 |
| MS.gene056506 | MS.gene36154 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene05659 | MS.gene36154 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene36154 | 0.812719 | 3.68E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene36154 | 0.822864 | 1.89E-53 | -1.69E-46 |
| MS.gene056779 | MS.gene36154 | 0.821993 | 3.00E-53 | -1.69E-46 |
| MS.gene056873 | MS.gene36154 | 0.831017 | 2.12E-55 | -1.69E-46 |
| MS.gene05690 | MS.gene36154 | 0.805827 | 1.11E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene36154 | 0.821155 | 4.69E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene36154 | 0.829249 | 5.72E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene36154 | 0.838602 | 2.61E-57 | -1.69E-46 |
| MS.gene057156 | MS.gene36154 | -0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene36154 | 0.836856 | 7.32E-57 | -1.69E-46 |
| MS.gene057598 | MS.gene36154 | 0.802474 | 5.51E-49 | -1.69E-46 |
| MS.gene057600 | MS.gene36154 | 0.812804 | 3.53E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene36154 | 0.831812 | 1.35E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene36154 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene36154 | 0.850235 | 1.94E-60 | -1.69E-46 |
| MS.gene057869 | MS.gene36154 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene36154 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene36154 | 0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene36154 | 0.899769 | 1.43E-77 | -1.69E-46 |
| MS.gene058146 | MS.gene36154 | 0.834671 | 2.62E-56 | -1.69E-46 |
| MS.gene058223 | MS.gene36154 | -0.857669 | 1.39E-62 | -1.69E-46 |
| MS.gene058289 | MS.gene36154 | 0.821884 | 3.18E-53 | -1.69E-46 |
| MS.gene058427 | MS.gene36154 | 0.830534 | 2.78E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene36154 | 0.85925 | 4.71E-63 | -1.69E-46 |
| MS.gene058548 | MS.gene36154 | 0.800409 | 1.46E-48 | -1.69E-46 |
| MS.gene058595 | MS.gene36154 | 0.826272 | 2.97E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene36154 | 0.845077 | 5.09E-59 | -1.69E-46 |
| MS.gene05897 | MS.gene36154 | 0.827035 | 1.95E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene36154 | 0.851519 | 8.42E-61 | -1.69E-46 |
| MS.gene059331 | MS.gene36154 | 0.805483 | 1.31E-49 | -1.69E-46 |
| MS.gene059335 | MS.gene36154 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene36154 | 0.84426 | 8.44E-59 | -1.69E-46 |
| MS.gene059440 | MS.gene36154 | 0.831367 | 1.74E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene36154 | 0.816548 | 5.22E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene36154 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene36154 | 0.862733 | 4.11E-64 | -1.69E-46 |
| MS.gene060011 | MS.gene36154 | 0.847574 | 1.06E-59 | -1.69E-46 |
| MS.gene06010 | MS.gene36154 | 0.814798 | 1.28E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene36154 | 0.81525 | 1.02E-51 | -1.69E-46 |
| MS.gene060191 | MS.gene36154 | 0.809402 | 1.93E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene36154 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene36154 | 0.826495 | 2.63E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene36154 | 0.808964 | 2.39E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene36154 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene36154 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene36154 | 0.807328 | 5.33E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene36154 | 0.836647 | 8.28E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene36154 | 0.864603 | 1.08E-64 | -1.69E-46 |
| MS.gene060683 | MS.gene36154 | 0.858368 | 8.64E-63 | -1.69E-46 |
| MS.gene060685 | MS.gene36154 | 0.862831 | 3.83E-64 | -1.69E-46 |
| MS.gene060777 | MS.gene36154 | 0.834869 | 2.34E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene36154 | 0.836553 | 8.75E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene36154 | 0.832277 | 1.04E-55 | -1.69E-46 |
| MS.gene060840 | MS.gene36154 | 0.807137 | 5.85E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene36154 | 0.874206 | 8.09E-68 | -1.69E-46 |
| MS.gene060851 | MS.gene36154 | 0.88163 | 2.05E-70 | -1.69E-46 |
| MS.gene060852 | MS.gene36154 | 0.882639 | 8.80E-71 | -1.69E-46 |
| MS.gene06089 | MS.gene36154 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene36154 | 0.866059 | 3.76E-65 | -1.69E-46 |
| MS.gene060933 | MS.gene36154 | 0.831758 | 1.39E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene36154 | 0.831787 | 1.37E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene36154 | 0.838796 | 2.32E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene36154 | 0.835449 | 1.67E-56 | -1.69E-46 |
| MS.gene06121 | MS.gene36154 | 0.863654 | 2.13E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36154 | MS.gene45755 | PPI |
| MS.gene36154 | MS.gene056175 | PPI |
| MS.gene95260 | MS.gene36154 | PPI |
| MS.gene016661 | MS.gene36154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36154.t1 | MTR_7g046250 | 96.465 | 877 | 31 | 0 | 1 | 877 | 1 | 877 | 0.0 | 1724 |
| MS.gene36154.t1 | MTR_7g046250 | 96.910 | 712 | 22 | 0 | 1 | 712 | 1 | 712 | 0.0 | 1397 |
| MS.gene36154.t1 | MTR_5g085010 | 32.609 | 828 | 552 | 4 | 54 | 877 | 55 | 880 | 6.42e-125 | 398 |
| MS.gene36154.t1 | MTR_1g068830 | 32.413 | 833 | 547 | 6 | 54 | 877 | 55 | 880 | 1.69e-109 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36154.t1 | AT2G44950 | 52.213 | 881 | 414 | 6 | 1 | 877 | 1 | 878 | 0.0 | 894 |
| MS.gene36154.t1 | AT2G44950 | 52.757 | 671 | 312 | 4 | 1 | 668 | 1 | 669 | 0.0 | 663 |
| MS.gene36154.t1 | AT1G55250 | 33.486 | 875 | 562 | 10 | 13 | 877 | 17 | 881 | 8.32e-135 | 424 |
| MS.gene36154.t1 | AT1G55250 | 33.181 | 877 | 564 | 8 | 17 | 877 | 30 | 900 | 7.61e-132 | 417 |
| MS.gene36154.t1 | AT1G55250 | 32.849 | 895 | 559 | 13 | 13 | 877 | 17 | 899 | 1.18e-127 | 406 |
| MS.gene36154.t1 | AT1G55250 | 39.529 | 382 | 228 | 3 | 497 | 877 | 4 | 383 | 1.72e-78 | 259 |
| MS.gene36154.t1 | AT1G55250 | 38.131 | 396 | 228 | 4 | 497 | 877 | 4 | 397 | 9.65e-75 | 250 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGAGCTTAAACGGTTAA+AGG | 0.219519 | 7.3:-56672043 | MS.gene36154:CDS |
| TGAGGTTTCAATGGGGAGTA+TGG | 0.222980 | 7.3:-56677086 | None:intergenic |
| CCAATTTCTGTGTAAGCTTT+TGG | 0.223175 | 7.3:+56675682 | None:intergenic |
| CCAAAAGCTTACACAGAAAT+TGG | 0.223214 | 7.3:-56675682 | MS.gene36154:CDS |
| ATCTACTTTGAAAGAGTTAT+TGG | 0.234463 | 7.3:-56668944 | MS.gene36154:intron |
| AACCTGTAGTTTCTCATATA+AGG | 0.265221 | 7.3:+56666723 | None:intergenic |
| CACAATGTGGTGCATGCTTC+GGG | 0.272037 | 7.3:-56658768 | MS.gene36154:CDS |
| TTCTTCATTTCCTGAGGAAA+TGG | 0.273372 | 7.3:-56666282 | MS.gene36154:CDS |
| AGTCATGTTCTGAACGTATA+AGG | 0.288036 | 7.3:-56675412 | MS.gene36154:CDS |
| GCCAGTTTCTGAGGACAAAA+AGG | 0.293476 | 7.3:-56676990 | MS.gene36154:intron |
| AATTATTTGCTTAGGGGAAC+TGG | 0.307765 | 7.3:-56669130 | MS.gene36154:intron |
| ATAACTTAGATGATTCTAAA+AGG | 0.312616 | 7.3:-56664318 | MS.gene36154:intron |
| GATGCAACAGATGTTGGTTT+TGG | 0.319522 | 7.3:+56662109 | None:intergenic |
| TCTTCATTTCCTGAGGAAAT+GGG | 0.330958 | 7.3:-56666281 | MS.gene36154:CDS |
| ACAAAAGGATTTGCAAGATA+TGG | 0.334252 | 7.3:-56668968 | MS.gene36154:CDS |
| ATCTGTGCTTGATGCAAATC+TGG | 0.350059 | 7.3:+56675367 | None:intergenic |
| TTGTCTTTGATCTTATCATT+AGG | 0.353984 | 7.3:+56668991 | None:intergenic |
| GACCGTCATCGGAACAGGTT+AGG | 0.362015 | 7.3:-56661187 | MS.gene36154:CDS |
| ATCGGAAGTGCAGGAGTATC+AGG | 0.362783 | 7.3:-56666746 | MS.gene36154:CDS |
| ACTTCAAAGTTCTGTCGGTT+TGG | 0.365422 | 7.3:-56661240 | MS.gene36154:CDS |
| CTATCTGATCTCTAACCAAT+TGG | 0.380571 | 7.3:+56666779 | None:intergenic |
| CTCTAACCAATTGGAATGCA+TGG | 0.382821 | 7.3:+56666788 | None:intergenic |
| CCACAATGTGGTGCATGCTT+CGG | 0.386526 | 7.3:-56658769 | MS.gene36154:CDS |
| AACCTTCCGATCGAGATTAC+TGG | 0.386745 | 7.3:+56666178 | None:intergenic |
| AAAATAAAGCTGAGCTTAAA+CGG | 0.394406 | 7.3:-56672050 | MS.gene36154:CDS |
| TACTGGGAGAACTGCCCCTT+TGG | 0.399859 | 7.3:+56669038 | None:intergenic |
| TCATGTATCCAGAAAATTGC+TGG | 0.400084 | 7.3:-56658811 | MS.gene36154:CDS |
| ATCTTCATGAGGAAAGAATA+AGG | 0.400478 | 7.3:-56668813 | MS.gene36154:CDS |
| CTTAGCCGACTCTTGCAAAC+TGG | 0.403238 | 7.3:-56672477 | MS.gene36154:CDS |
| GTATTCCCGACAGCTAATAC+TGG | 0.403775 | 7.3:+56669021 | None:intergenic |
| AATGCGATGCATTATCTGTT+AGG | 0.404784 | 7.3:-56666070 | MS.gene36154:CDS |
| CTCTTCCCATGCATTCCAAT+TGG | 0.405606 | 7.3:-56666794 | MS.gene36154:CDS |
| TCAGAAACTTGCAACTCTTA+AGG | 0.406280 | 7.3:-56669076 | MS.gene36154:CDS |
| TATTAGACCGTCATCGGAAC+AGG | 0.409184 | 7.3:-56661192 | MS.gene36154:CDS |
| ATTGTGGACATTTGCGCTGC+CGG | 0.410970 | 7.3:+56658785 | None:intergenic |
| TATCATGGAGAAGCGATTGA+TGG | 0.412933 | 7.3:-56661450 | MS.gene36154:CDS |
| GCTGAGCTTAAACGGTTAAA+GGG | 0.418385 | 7.3:-56672042 | MS.gene36154:intron |
| AACTTTCAGTGTCTGAAAGA+TGG | 0.420796 | 7.3:-56672342 | MS.gene36154:CDS |
| ACAGCAATTGTGCGATCTAC+AGG | 0.424577 | 7.3:-56668785 | MS.gene36154:intron |
| CTTACTTAGTTGACTTTGCA+TGG | 0.431084 | 7.3:+56666256 | None:intergenic |
| GACATGAGACCATTGATTCA+AGG | 0.431089 | 7.3:-56664783 | MS.gene36154:intron |
| CAGTAGTCGGGTGACTCATA+TGG | 0.437649 | 7.3:-56661132 | MS.gene36154:CDS |
| CATCTAAATCCCTGTGAGTT+CGG | 0.440157 | 7.3:+56672076 | None:intergenic |
| AGGAAGATCTAGAGGTTGCT+AGG | 0.451540 | 7.3:-56660973 | MS.gene36154:CDS |
| TAGCAGTGGTCAAGAAGTCT+TGG | 0.452373 | 7.3:-56675578 | MS.gene36154:CDS |
| CTGATATACGCGCTGAGATA+CGG | 0.455668 | 7.3:-56666490 | MS.gene36154:CDS |
| TGCATGGACCCCATTTCCTC+AGG | 0.455701 | 7.3:+56666272 | None:intergenic |
| AGAAACTGATAAGCTTCAAC+AGG | 0.457621 | 7.3:-56660909 | MS.gene36154:CDS |
| CCACTGCTCGTGTTGAAGCT+TGG | 0.457812 | 7.3:+56668845 | None:intergenic |
| GAACGTAGTTACAAATAAAC+CGG | 0.459326 | 7.3:+56658730 | None:intergenic |
| GGAAAGCACGGTTGCAGAGT+TGG | 0.459341 | 7.3:-56669109 | MS.gene36154:CDS |
| GTCATGTTCTGAACGTATAA+GGG | 0.469038 | 7.3:-56675411 | MS.gene36154:CDS |
| GCACATCTGCACGCAAAGAA+TGG | 0.469686 | 7.3:+56666210 | None:intergenic |
| TCATACAAACCTTGAATCAA+TGG | 0.472475 | 7.3:+56664774 | None:intergenic |
| GCAGATGTTATCCAGTGATC+TGG | 0.472598 | 7.3:-56672172 | MS.gene36154:CDS |
| ATCTAAAATAACCAGTAGTC+GGG | 0.474106 | 7.3:-56661144 | MS.gene36154:CDS |
| CATATGAGTCACCCGACTAC+TGG | 0.479992 | 7.3:+56661133 | None:intergenic |
| TCCAGAAAATTGCTGGGAGC+CGG | 0.480704 | 7.3:-56658804 | MS.gene36154:CDS |
| AACCTCTATTTCAGATAAGT+AGG | 0.484263 | 7.3:+56662256 | None:intergenic |
| AGCCTACTTATCTGAAATAG+AGG | 0.484505 | 7.3:-56662258 | MS.gene36154:intron |
| TTCTCCCAGTATTAGCTGTC+GGG | 0.487388 | 7.3:-56669026 | MS.gene36154:CDS |
| AAAATCAAAATCGGAAGTGC+AGG | 0.488875 | 7.3:-56666755 | MS.gene36154:CDS |
| TAGAGAAAGACGCAGCCAAA+GGG | 0.493254 | 7.3:-56669053 | MS.gene36154:CDS |
| AGCAGTGGTCAAGAAGTCTT+GGG | 0.499654 | 7.3:-56675577 | MS.gene36154:CDS |
| ACTTTCGACCTCCAGATCAC+TGG | 0.500719 | 7.3:+56672161 | None:intergenic |
| AAGTAGAACTTGAGAAAGAA+AGG | 0.500774 | 7.3:-56661103 | MS.gene36154:intron |
| AATCTAAAATAACCAGTAGT+CGG | 0.501244 | 7.3:-56661145 | MS.gene36154:CDS |
| CTTCATTTCCTGAGGAAATG+GGG | 0.504975 | 7.3:-56666280 | MS.gene36154:CDS |
| CGGGGCTAATGATGTTAAGC+CGG | 0.506978 | 7.3:-56658749 | MS.gene36154:CDS |
| GATAAGCTTCAACAGGAACT+AGG | 0.508052 | 7.3:-56660902 | MS.gene36154:CDS |
| GTCCTCAGAAACTGGCAAGA+AGG | 0.508436 | 7.3:+56676997 | None:intergenic |
| TGTAAGGGCTAGACAAAAGC+AGG | 0.508833 | 7.3:-56661480 | MS.gene36154:CDS |
| TAATCTGATGCAACAGATGT+TGG | 0.509959 | 7.3:+56662103 | None:intergenic |
| ATAGTCTTACATGGAGGGAG+AGG | 0.511376 | 7.3:-56666583 | MS.gene36154:CDS |
| TATATACTTGTAGGCTGAGA+AGG | 0.511456 | 7.3:-56666606 | MS.gene36154:intron |
| TAAGTATAAAGAATCAGCTT+CGG | 0.513406 | 7.3:-56666237 | MS.gene36154:CDS |
| AGTGCAGTATCTGCCGAGAC+AGG | 0.513971 | 7.3:-56660859 | MS.gene36154:CDS |
| CTGAGAAGGATAGTCTTACA+TGG | 0.515724 | 7.3:-56666592 | MS.gene36154:CDS |
| AATAAACTTCAAAGTTCTGT+CGG | 0.516407 | 7.3:-56661245 | MS.gene36154:CDS |
| ACCCTTCTTGCCAGTTTCTG+AGG | 0.517685 | 7.3:-56676999 | MS.gene36154:CDS |
| AAAGAGGAAGCAAGAGAACC+AGG | 0.518632 | 7.3:-56666428 | MS.gene36154:intron |
| GAGGTTTCAATGGGGAGTAT+GGG | 0.518669 | 7.3:-56677085 | None:intergenic |
| ACCGTCATCGGAACAGGTTA+GGG | 0.519061 | 7.3:-56661186 | MS.gene36154:CDS |
| TCCTCAGAAACTGGCAAGAA+GGG | 0.522089 | 7.3:+56676998 | None:intergenic |
| AACAGGAACTAGGAGAGTAC+AGG | 0.522747 | 7.3:-56660892 | MS.gene36154:CDS |
| TGGGTGAACATGATAGAAAA+CGG | 0.532033 | 7.3:-56677066 | MS.gene36154:CDS |
| TTACATGGAGGGAGAGGGAG+TGG | 0.533023 | 7.3:-56666577 | MS.gene36154:CDS |
| AAAAGTAGAGGAAGATCTAG+AGG | 0.533675 | 7.3:-56660981 | MS.gene36154:CDS |
| GGTAGCTTCTTAGCAGTGGC+AGG | 0.535647 | 7.3:+56677019 | None:intergenic |
| GGTCAAGAAGTCTTGGGAGC+AGG | 0.543896 | 7.3:-56675571 | MS.gene36154:intron |
| TAAGATCAAAGACAAACAAA+AGG | 0.545494 | 7.3:-56668983 | MS.gene36154:CDS |
| TTATCACTTTGCCAACGAGA+TGG | 0.547267 | 7.3:-56672433 | MS.gene36154:CDS |
| TTCCAGTAATCTCGATCGGA+AGG | 0.547498 | 7.3:-56666180 | MS.gene36154:intron |
| TCCCTAACCTGTTCCGATGA+CGG | 0.549576 | 7.3:+56661185 | None:intergenic |
| GGGAAGCAGAATACATAGCA+TGG | 0.551279 | 7.3:-56664474 | MS.gene36154:CDS |
| GGCTGTTTATAGTTTCATGT+GGG | 0.553565 | 7.3:-56672194 | MS.gene36154:intron |
| GATTGAAAATAAGCTGAAAG+AGG | 0.553675 | 7.3:-56666444 | MS.gene36154:CDS |
| CTCGTTGGCAAAGTGATAAG+AGG | 0.553920 | 7.3:+56672437 | None:intergenic |
| TGGCTGTTTATAGTTTCATG+TGG | 0.554471 | 7.3:-56672195 | MS.gene36154:intron |
| CTATTTCCAGTAATCTCGAT+CGG | 0.554707 | 7.3:-56666184 | MS.gene36154:CDS |
| TCTATGTTGCTCCATCTCGT+TGG | 0.559317 | 7.3:+56672422 | None:intergenic |
| GAGAGATGACTACAATATCA+AGG | 0.560051 | 7.3:-56662076 | MS.gene36154:intron |
| CAATTGGAATGCATGGGAAG+AGG | 0.560334 | 7.3:+56666795 | None:intergenic |
| CAAGTGATTTCCGAACTCAC+AGG | 0.561760 | 7.3:-56672086 | MS.gene36154:CDS |
| TCTTCTTTCTTCATTTCCTG+AGG | 0.561961 | 7.3:-56666288 | MS.gene36154:CDS |
| CTTAGGGGAACTGGAAAGCA+CGG | 0.562147 | 7.3:-56669121 | MS.gene36154:intron |
| AAGTGATTTCCGAACTCACA+GGG | 0.563386 | 7.3:-56672085 | MS.gene36154:CDS |
| TTGCACCAGTTTGCAAGAGT+CGG | 0.564442 | 7.3:+56672472 | None:intergenic |
| AGATTTGCATCAAGCACAGA+TGG | 0.565813 | 7.3:-56675365 | MS.gene36154:intron |
| AGTGGCAGGTGTAGGTGACA+AGG | 0.568880 | 7.3:+56677033 | None:intergenic |
| GTAGAGAAAGACGCAGCCAA+AGG | 0.572588 | 7.3:-56669054 | MS.gene36154:CDS |
| TTCTTAGCAGTGGCAGGTGT+AGG | 0.573175 | 7.3:+56677025 | None:intergenic |
| TCTAACCAATTGGAATGCAT+GGG | 0.573358 | 7.3:+56666789 | None:intergenic |
| GGCCTTATATGAGAAACTAC+AGG | 0.575556 | 7.3:-56666725 | MS.gene36154:intron |
| GGAAGTTTCTGATCTTAAAG+TGG | 0.575782 | 7.3:-56666513 | MS.gene36154:CDS |
| CCAAGCTTCAACACGAGCAG+TGG | 0.576413 | 7.3:-56668845 | MS.gene36154:CDS |
| TAGTCTTACATGGAGGGAGA+GGG | 0.581313 | 7.3:-56666582 | MS.gene36154:CDS |
| GAAGGGTAGCTTCTTAGCAG+TGG | 0.581458 | 7.3:+56677015 | None:intergenic |
| GCAGGGATGTCATGGAAGCA+AGG | 0.584185 | 7.3:-56664495 | MS.gene36154:intron |
| GTTCTCCCAGTATTAGCTGT+CGG | 0.584239 | 7.3:-56669027 | MS.gene36154:CDS |
| CCGAAGCATGCACCACATTG+TGG | 0.587962 | 7.3:+56658769 | None:intergenic |
| CATGTATCCAGAAAATTGCT+GGG | 0.589302 | 7.3:-56658810 | MS.gene36154:CDS |
| CTGCCGAGACAGGACAAAAG+AGG | 0.592834 | 7.3:-56660849 | MS.gene36154:intron |
| AAATACACAAAGAAGGCTGT+CGG | 0.594073 | 7.3:-56661216 | MS.gene36154:CDS |
| GTTTGGAAAATACACAAAGA+AGG | 0.595469 | 7.3:-56661223 | MS.gene36154:CDS |
| GTCGGATATTAGACCGTCAT+CGG | 0.597020 | 7.3:-56661198 | MS.gene36154:CDS |
| TACATGAGTTGCAGAACAAG+TGG | 0.609530 | 7.3:+56658827 | None:intergenic |
| GAAGGATAGTCTTACATGGA+GGG | 0.610073 | 7.3:-56666588 | MS.gene36154:CDS |
| CAGGGATGTCATGGAAGCAA+GGG | 0.610138 | 7.3:-56664494 | MS.gene36154:CDS |
| AGAGAAAGACGCAGCCAAAG+GGG | 0.616593 | 7.3:-56669052 | MS.gene36154:CDS |
| ACAGGTTAGGGATACAGTGA+TGG | 0.617186 | 7.3:-56661174 | MS.gene36154:CDS |
| TATTCCCGACAGCTAATACT+GGG | 0.622581 | 7.3:+56669022 | None:intergenic |
| GGAAGCAGAATACATAGCAT+GGG | 0.623840 | 7.3:-56664473 | MS.gene36154:CDS |
| ATATGATTCTACTTTAGCAG+TGG | 0.624102 | 7.3:-56675592 | MS.gene36154:CDS |
| TCAAGATTTACAAGTGACTG+AGG | 0.649455 | 7.3:-56664836 | MS.gene36154:CDS |
| ACAATGTGGTGCATGCTTCG+GGG | 0.650573 | 7.3:-56658767 | MS.gene36154:CDS |
| GATGTTATCCAGTGATCTGG+AGG | 0.657622 | 7.3:-56672169 | MS.gene36154:CDS |
| ACAGGAACTAGGAGAGTACA+GGG | 0.669390 | 7.3:-56660891 | MS.gene36154:CDS |
| CAGCGCAAATGTCCACAATG+TGG | 0.671136 | 7.3:-56658781 | MS.gene36154:CDS |
| GATAAATAGACTGCTTGCTG+TGG | 0.678021 | 7.3:-56666027 | MS.gene36154:intron |
| AGAAGGATAGTCTTACATGG+AGG | 0.685695 | 7.3:-56666589 | MS.gene36154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 56658738 | 56677098 | 56658738 | ID=MS.gene36154 |
| chr7.3 | mRNA | 56658738 | 56677098 | 56658738 | ID=MS.gene36154.t1;Parent=MS.gene36154 |
| chr7.3 | exon | 56676991 | 56677098 | 56676991 | ID=MS.gene36154.t1.exon1;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56676991 | 56677098 | 56676991 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56675572 | 56675733 | 56675572 | ID=MS.gene36154.t1.exon2;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56675572 | 56675733 | 56675572 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56675366 | 56675450 | 56675366 | ID=MS.gene36154.t1.exon3;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56675366 | 56675450 | 56675366 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56672304 | 56672531 | 56672304 | ID=MS.gene36154.t1.exon4;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56672304 | 56672531 | 56672304 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56672043 | 56672204 | 56672043 | ID=MS.gene36154.t1.exon5;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56672043 | 56672204 | 56672043 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56668945 | 56669138 | 56668945 | ID=MS.gene36154.t1.exon6;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56668945 | 56669138 | 56668945 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56668786 | 56668869 | 56668786 | ID=MS.gene36154.t1.exon7;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56668786 | 56668869 | 56668786 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56666726 | 56666845 | 56666726 | ID=MS.gene36154.t1.exon8;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56666726 | 56666845 | 56666726 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56666429 | 56666615 | 56666429 | ID=MS.gene36154.t1.exon9;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56666429 | 56666615 | 56666429 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56666181 | 56666341 | 56666181 | ID=MS.gene36154.t1.exon10;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56666181 | 56666341 | 56666181 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56666028 | 56666099 | 56666028 | ID=MS.gene36154.t1.exon11;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56666028 | 56666099 | 56666028 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56664784 | 56664860 | 56664784 | ID=MS.gene36154.t1.exon12;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56664784 | 56664860 | 56664784 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56664319 | 56664513 | 56664319 | ID=MS.gene36154.t1.exon13;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56664319 | 56664513 | 56664319 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56662259 | 56662331 | 56662259 | ID=MS.gene36154.t1.exon14;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56662259 | 56662331 | 56662259 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56662077 | 56662163 | 56662077 | ID=MS.gene36154.t1.exon15;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56662077 | 56662163 | 56662077 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56661379 | 56661516 | 56661379 | ID=MS.gene36154.t1.exon16;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56661379 | 56661516 | 56661379 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56661104 | 56661306 | 56661104 | ID=MS.gene36154.t1.exon17;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56661104 | 56661306 | 56661104 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56660850 | 56661015 | 56660850 | ID=MS.gene36154.t1.exon18;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56660850 | 56661015 | 56660850 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| chr7.3 | exon | 56658738 | 56658869 | 56658738 | ID=MS.gene36154.t1.exon19;Parent=MS.gene36154.t1 |
| chr7.3 | CDS | 56658738 | 56658869 | 56658738 | ID=cds.MS.gene36154.t1;Parent=MS.gene36154.t1 |
| Gene Sequence |
| Protein sequence |
