Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09008.t1 | KEH20621.1 | 97.6 | 82 | 2 | 0 | 31 | 112 | 1 | 82 | 5.50E-36 | 160.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09008.t1 | A0A1P8B760 | 58.3 | 72 | 29 | 1 | 30 | 100 | 436 | 507 | 4.7e-12 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09008.t1 | A0A072TTV0 | 97.6 | 82 | 2 | 0 | 31 | 112 | 1 | 82 | 3.9e-36 | 160.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09008 | 0.816239 | 6.13E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene09008 | 0.85308 | 3.03E-61 | -1.69E-46 |
| MS.gene049254 | MS.gene09008 | 0.833555 | 4.99E-56 | -1.69E-46 |
| MS.gene049343 | MS.gene09008 | 0.805271 | 1.45E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene09008 | 0.813041 | 3.13E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene09008 | 0.861041 | 1.36E-63 | -1.69E-46 |
| MS.gene049501 | MS.gene09008 | 0.822419 | 2.39E-53 | -1.69E-46 |
| MS.gene049530 | MS.gene09008 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene049669 | MS.gene09008 | 0.812994 | 3.20E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene09008 | 0.825106 | 5.62E-54 | -1.69E-46 |
| MS.gene050026 | MS.gene09008 | 0.821176 | 4.64E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene09008 | 0.82127 | 4.41E-53 | -1.69E-46 |
| MS.gene050273 | MS.gene09008 | 0.812229 | 4.71E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene09008 | 0.853851 | 1.82E-61 | -1.69E-46 |
| MS.gene050561 | MS.gene09008 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene09008 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene050780 | MS.gene09008 | 0.808441 | 3.09E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene09008 | 0.821524 | 3.86E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene09008 | 0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene050953 | MS.gene09008 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene050962 | MS.gene09008 | 0.832911 | 7.22E-56 | -1.69E-46 |
| MS.gene051147 | MS.gene09008 | 0.825183 | 5.39E-54 | -1.69E-46 |
| MS.gene051180 | MS.gene09008 | 0.81867 | 1.74E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene09008 | 0.815843 | 7.51E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene09008 | 0.828642 | 8.02E-55 | -1.69E-46 |
| MS.gene051265 | MS.gene09008 | 0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene09008 | 0.820701 | 5.97E-53 | -1.69E-46 |
| MS.gene05132 | MS.gene09008 | 0.815166 | 1.06E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene09008 | 0.801488 | 8.80E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene09008 | 0.80121 | 1.00E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene09008 | 0.817158 | 3.81E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene09008 | 0.831625 | 1.50E-55 | -1.69E-46 |
| MS.gene051800 | MS.gene09008 | 0.843559 | 1.30E-58 | -1.69E-46 |
| MS.gene052020 | MS.gene09008 | 0.831662 | 1.47E-55 | -1.69E-46 |
| MS.gene052056 | MS.gene09008 | -0.817684 | 2.90E-52 | -1.69E-46 |
| MS.gene052108 | MS.gene09008 | 0.804121 | 2.52E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene09008 | 0.806863 | 6.69E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene09008 | 0.821499 | 3.91E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene09008 | 0.843559 | 1.30E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene09008 | 0.829864 | 4.05E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene09008 | 0.823699 | 1.20E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene09008 | 0.822547 | 2.23E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene09008 | 0.825037 | 5.83E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene09008 | 0.839928 | 1.18E-57 | -1.69E-46 |
| MS.gene052867 | MS.gene09008 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene09008 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene09008 | 0.819526 | 1.11E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene09008 | 0.81041 | 1.17E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene09008 | 0.829178 | 5.95E-55 | -1.69E-46 |
| MS.gene053201 | MS.gene09008 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene09008 | 0.841042 | 6.04E-58 | -1.69E-46 |
| MS.gene053966 | MS.gene09008 | 0.820471 | 6.74E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene09008 | 0.806451 | 8.18E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene09008 | 0.83531 | 1.81E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene09008 | 0.85505 | 8.18E-62 | -1.69E-46 |
| MS.gene054236 | MS.gene09008 | 0.860237 | 2.38E-63 | -1.69E-46 |
| MS.gene05423 | MS.gene09008 | 0.823287 | 1.50E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene09008 | -0.832445 | 9.42E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene09008 | 0.831473 | 1.64E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene09008 | 0.820412 | 6.95E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene09008 | 0.822432 | 2.38E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene09008 | 0.816061 | 6.71E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene09008 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene09008 | 0.843328 | 1.50E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene09008 | 0.834039 | 3.77E-56 | -1.69E-46 |
| MS.gene05517 | MS.gene09008 | 0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene09008 | 0.847185 | 1.36E-59 | -1.69E-46 |
| MS.gene055228 | MS.gene09008 | 0.839767 | 1.30E-57 | -1.69E-46 |
| MS.gene055356 | MS.gene09008 | 0.802571 | 5.27E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene09008 | 0.809432 | 1.90E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene09008 | 0.807954 | 3.93E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene09008 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene09008 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene09008 | 0.812848 | 3.45E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene09008 | 0.867961 | 9.30E-66 | -1.69E-46 |
| MS.gene055926 | MS.gene09008 | 0.843903 | 1.05E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene09008 | 0.840796 | 7.01E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene09008 | 0.815355 | 9.65E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene09008 | 0.816674 | 4.90E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene09008 | 0.856168 | 3.86E-62 | -1.69E-46 |
| MS.gene056174 | MS.gene09008 | 0.852083 | 5.83E-61 | -1.69E-46 |
| MS.gene056252 | MS.gene09008 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene09008 | 0.821953 | 3.07E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene09008 | 0.815513 | 8.90E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene09008 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene09008 | 0.824844 | 6.48E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene09008 | 0.803392 | 3.56E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene09008 | 0.820653 | 6.12E-53 | -1.69E-46 |
| MS.gene056873 | MS.gene09008 | 0.802696 | 4.96E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene09008 | 0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene057012 | MS.gene09008 | 0.807902 | 4.03E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene09008 | 0.823658 | 1.23E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene09008 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene09008 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene09008 | 0.807829 | 4.17E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene09008 | 0.811522 | 6.71E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene09008 | 0.840542 | 8.17E-58 | -1.69E-46 |
| MS.gene057598 | MS.gene09008 | 0.815085 | 1.11E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene09008 | 0.838564 | 2.67E-57 | -1.69E-46 |
| MS.gene057855 | MS.gene09008 | 0.843937 | 1.03E-58 | -1.69E-46 |
| MS.gene057869 | MS.gene09008 | 0.843406 | 1.43E-58 | -1.69E-46 |
| MS.gene057915 | MS.gene09008 | 0.852741 | 3.78E-61 | -1.69E-46 |
| MS.gene058010 | MS.gene09008 | 0.842188 | 3.01E-58 | -1.69E-46 |
| MS.gene058037 | MS.gene09008 | 0.822487 | 2.31E-53 | -1.69E-46 |
| MS.gene05847 | MS.gene09008 | 0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene09008 | 0.805742 | 1.15E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene09008 | 0.814567 | 1.44E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene09008 | 0.848393 | 6.31E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene09008 | 0.807293 | 5.42E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene09008 | 0.815919 | 7.22E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene09008 | 0.864936 | 8.49E-65 | -1.69E-46 |
| MS.gene059272 | MS.gene09008 | 0.826724 | 2.32E-54 | -1.69E-46 |
| MS.gene059331 | MS.gene09008 | 0.811528 | 6.69E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene09008 | 0.823986 | 1.03E-53 | -1.69E-46 |
| MS.gene059550 | MS.gene09008 | 0.819842 | 9.39E-53 | -1.69E-46 |
| MS.gene059570 | MS.gene09008 | 0.815595 | 8.53E-52 | -1.69E-46 |
| MS.gene059584 | MS.gene09008 | 0.818538 | 1.86E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene09008 | 0.804582 | 2.02E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene09008 | 0.84302 | 1.81E-58 | -1.69E-46 |
| MS.gene05973 | MS.gene09008 | 0.813693 | 2.25E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene09008 | 0.830723 | 2.50E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene09008 | 0.836071 | 1.16E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene09008 | -0.810941 | 8.97E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene09008 | 0.841425 | 4.79E-58 | -1.69E-46 |
| MS.gene060310 | MS.gene09008 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene060312 | MS.gene09008 | 0.807123 | 5.90E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene09008 | 0.839767 | 1.30E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene09008 | 0.808356 | 3.22E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene09008 | 0.83781 | 4.17E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene09008 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene060634 | MS.gene09008 | -0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene09008 | 0.836327 | 9.99E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene09008 | 0.843259 | 1.56E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene09008 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene09008 | 0.836089 | 1.15E-56 | -1.69E-46 |
| MS.gene060998 | MS.gene09008 | 0.826234 | 3.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09008.t1 | MTR_8g080850 | 97.561 | 82 | 2 | 0 | 31 | 112 | 1 | 82 | 1.92e-52 | 159 |
| MS.gene09008.t1 | MTR_8g080840 | 87.654 | 81 | 10 | 0 | 30 | 110 | 437 | 517 | 5.06e-42 | 144 |
| MS.gene09008.t1 | MTR_8g080870 | 86.076 | 79 | 11 | 0 | 30 | 108 | 409 | 487 | 2.06e-41 | 142 |
| MS.gene09008.t1 | MTR_8g080880 | 87.342 | 79 | 10 | 0 | 30 | 108 | 437 | 515 | 3.48e-41 | 142 |
| MS.gene09008.t1 | MTR_8g097220 | 88.095 | 84 | 9 | 1 | 30 | 112 | 434 | 517 | 6.30e-41 | 141 |
| MS.gene09008.t1 | MTR_8g080890 | 85.714 | 77 | 11 | 0 | 30 | 106 | 438 | 514 | 5.25e-37 | 130 |
| MS.gene09008.t1 | MTR_4g074030 | 69.863 | 73 | 21 | 1 | 29 | 100 | 434 | 506 | 1.10e-25 | 100 |
| MS.gene09008.t1 | MTR_4g073970 | 63.077 | 65 | 23 | 1 | 30 | 93 | 238 | 302 | 1.64e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09008.t1 | AT4G34880 | 69.444 | 72 | 21 | 1 | 30 | 100 | 390 | 461 | 3.34e-25 | 98.6 |
| MS.gene09008.t1 | AT4G34880 | 69.444 | 72 | 21 | 1 | 30 | 100 | 436 | 507 | 3.82e-25 | 98.6 |
Find 28 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTGACGGTGTGGATTCT+TGG | 0.256519 | 4.4:+15169265 | MS.gene09008:CDS |
| TTTAGTAGCATACTTGCTAT+TGG | 0.285041 | 4.4:+15169384 | MS.gene09008:CDS |
| CTTGCTATTGGAGGTTATCT+TGG | 0.307365 | 4.4:+15169396 | MS.gene09008:CDS |
| TTGGTCTTGGAAGCTTAGTT+TGG | 0.311340 | 4.4:+15169284 | MS.gene09008:CDS |
| ATGCTACTAAAGAATGAAAA+AGG | 0.327148 | 4.4:-15169372 | None:intergenic |
| CAGCCATTTGGAATTTGCTT+TGG | 0.337732 | 4.4:+15169450 | MS.gene09008:CDS |
| CCATTTGGAATTTGCTTTGG+AGG | 0.347630 | 4.4:+15169453 | MS.gene09008:CDS |
| ACGGTGTGGATTCTTGGTCT+TGG | 0.417239 | 4.4:+15169271 | MS.gene09008:CDS |
| GTTCCAGCAGGATATGAAAA+AGG | 0.427483 | 4.4:+15169426 | MS.gene09008:CDS |
| GTCTTGGAAGCTTAGTTTGG+AGG | 0.439009 | 4.4:+15169287 | MS.gene09008:CDS |
| TTGTAACTTCCAACTTCCTA+AGG | 0.444018 | 4.4:-15169554 | None:intergenic |
| TAAGCAATCTCAATCAACTT+TGG | 0.456653 | 4.4:-15169492 | None:intergenic |
| AATCCACACCGTCAGACAAC+GGG | 0.474967 | 4.4:-15169260 | None:intergenic |
| GCCATCACCCCTTAGGAAGT+TGG | 0.476560 | 4.4:+15169545 | MS.gene09008:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.485064 | 4.4:+15169462 | MS.gene09008:CDS |
| AGTAGCATACTTGCTATTGG+AGG | 0.497454 | 4.4:+15169387 | MS.gene09008:CDS |
| TCAGAAAGCCATCACCCCTT+AGG | 0.498171 | 4.4:+15169538 | MS.gene09008:CDS |
| TCTTGGAAGCTTAGTTTGGA+GGG | 0.501942 | 4.4:+15169288 | MS.gene09008:CDS |
| CTTGGAGTGATTGTTCCAGC+AGG | 0.513725 | 4.4:+15169414 | MS.gene09008:CDS |
| TCCAACTTCCTAAGGGGTGA+TGG | 0.529966 | 4.4:-15169546 | None:intergenic |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.542753 | 4.4:-15169453 | None:intergenic |
| GGCGAGTGCCCGTTGTCTGA+CGG | 0.543749 | 4.4:+15169252 | MS.gene09008:CDS |
| TGTAACTTCCAACTTCCTAA+GGG | 0.549765 | 4.4:-15169553 | None:intergenic |
| TTTGCTTTGGAGGTTTGAAA+GGG | 0.567329 | 4.4:+15169463 | MS.gene09008:CDS |
| AATAAATAAACTTGATGCTG+TGG | 0.588874 | 4.4:+15169344 | MS.gene09008:CDS |
| GAATCCACACCGTCAGACAA+CGG | 0.634170 | 4.4:-15169261 | None:intergenic |
| GTGCCCGTTGTCTGACGGTG+TGG | 0.634476 | 4.4:+15169257 | MS.gene09008:CDS |
| GTAACTTCCAACTTCCTAAG+GGG | 0.639313 | 4.4:-15169552 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAAATAAACTTGATGCTG+TGG | + | chr4.4:15169344-15169363 | MS.gene09008:CDS | 25.0% |
| ! | ATGCTACTAAAGAATGAAAA+AGG | - | chr4.4:15169375-15169394 | None:intergenic | 25.0% |
| TAAGCAATCTCAATCAACTT+TGG | - | chr4.4:15169495-15169514 | None:intergenic | 30.0% | |
| !! | TTTAGTAGCATACTTGCTAT+TGG | + | chr4.4:15169384-15169403 | MS.gene09008:CDS | 30.0% |
| TATGAAAAAGGTCAGCCATT+TGG | + | chr4.4:15169438-15169457 | MS.gene09008:CDS | 35.0% | |
| TGTAACTTCCAACTTCCTAA+GGG | - | chr4.4:15169556-15169575 | None:intergenic | 35.0% | |
| TTGTAACTTCCAACTTCCTA+AGG | - | chr4.4:15169557-15169576 | None:intergenic | 35.0% | |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | + | chr4.4:15169462-15169481 | MS.gene09008:CDS | 35.0% |
| !! | TTTGCTTTGGAGGTTTGAAA+GGG | + | chr4.4:15169463-15169482 | MS.gene09008:CDS | 35.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | - | chr4.4:15169456-15169475 | None:intergenic | 40.0% | |
| GTAACTTCCAACTTCCTAAG+GGG | - | chr4.4:15169555-15169574 | None:intergenic | 40.0% | |
| GTTCCAGCAGGATATGAAAA+AGG | + | chr4.4:15169426-15169445 | MS.gene09008:CDS | 40.0% | |
| ! | CAGCCATTTGGAATTTGCTT+TGG | + | chr4.4:15169450-15169469 | MS.gene09008:CDS | 40.0% |
| ! | CCATTTGGAATTTGCTTTGG+AGG | + | chr4.4:15169453-15169472 | MS.gene09008:CDS | 40.0% |
| ! | TCTTGGAAGCTTAGTTTGGA+GGG | + | chr4.4:15169288-15169307 | MS.gene09008:CDS | 40.0% |
| !! | AGTAGCATACTTGCTATTGG+AGG | + | chr4.4:15169387-15169406 | MS.gene09008:CDS | 40.0% |
| !! | CTTGCTATTGGAGGTTATCT+TGG | + | chr4.4:15169396-15169415 | MS.gene09008:CDS | 40.0% |
| !! | TGACCTTTTTCATATCCTGC+TGG | - | chr4.4:15169432-15169451 | None:intergenic | 40.0% |
| !! | TTGGTCTTGGAAGCTTAGTT+TGG | + | chr4.4:15169284-15169303 | MS.gene09008:CDS | 40.0% |
| ! | GTCTTGGAAGCTTAGTTTGG+AGG | + | chr4.4:15169287-15169306 | MS.gene09008:CDS | 45.0% |
| AATCCACACCGTCAGACAAC+GGG | - | chr4.4:15169263-15169282 | None:intergenic | 50.0% | |
| ACGGTGTGGATTCTTGGTCT+TGG | + | chr4.4:15169271-15169290 | MS.gene09008:CDS | 50.0% | |
| CTTGGAGTGATTGTTCCAGC+AGG | + | chr4.4:15169414-15169433 | MS.gene09008:CDS | 50.0% | |
| GAATCCACACCGTCAGACAA+CGG | - | chr4.4:15169264-15169283 | None:intergenic | 50.0% | |
| TCAGAAAGCCATCACCCCTT+AGG | + | chr4.4:15169538-15169557 | MS.gene09008:CDS | 50.0% | |
| TCCAACTTCCTAAGGGGTGA+TGG | - | chr4.4:15169549-15169568 | None:intergenic | 50.0% | |
| TGTCTGACGGTGTGGATTCT+TGG | + | chr4.4:15169265-15169284 | MS.gene09008:CDS | 50.0% | |
| GCCATCACCCCTTAGGAAGT+TGG | + | chr4.4:15169545-15169564 | MS.gene09008:CDS | 55.0% | |
| GGCGAGTGCCCGTTGTCTGA+CGG | + | chr4.4:15169252-15169271 | MS.gene09008:CDS | 65.0% | |
| GTGCCCGTTGTCTGACGGTG+TGG | + | chr4.4:15169257-15169276 | MS.gene09008:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15169249 | 15169587 | 15169249 | ID=MS.gene09008 |
| chr4.4 | mRNA | 15169249 | 15169587 | 15169249 | ID=MS.gene09008.t1;Parent=MS.gene09008 |
| chr4.4 | exon | 15169249 | 15169587 | 15169249 | ID=MS.gene09008.t1.exon1;Parent=MS.gene09008.t1 |
| chr4.4 | CDS | 15169249 | 15169587 | 15169249 | ID=cds.MS.gene09008.t1;Parent=MS.gene09008.t1 |
| Gene Sequence |
| Protein sequence |
