Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76043.t1 | XP_024642059.1 | 99.3 | 431 | 3 | 0 | 1 | 431 | 1 | 431 | 6.80E-252 | 879.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76043.t1 | Q75HX5 | 74.0 | 450 | 93 | 6 | 1 | 431 | 1 | 445 | 8.9e-184 | 644.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76043.t1 | G7ICY3 | 99.3 | 431 | 3 | 0 | 1 | 431 | 1 | 431 | 4.9e-252 | 879.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76043.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene76043 | -0.809548 | 1.79E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene76043 | -0.828791 | 7.39E-55 | -1.69E-46 |
| MS.gene049297 | MS.gene76043 | -0.864727 | 9.88E-65 | -1.69E-46 |
| MS.gene04933 | MS.gene76043 | -0.820505 | 6.62E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene76043 | -0.813396 | 2.61E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene76043 | -0.867953 | 9.36E-66 | -1.69E-46 |
| MS.gene049491 | MS.gene76043 | -0.813866 | 2.06E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene76043 | 0.817302 | 3.54E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene76043 | -0.887223 | 1.72E-72 | -1.69E-46 |
| MS.gene049910 | MS.gene76043 | -0.819951 | 8.87E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene76043 | -0.840053 | 1.10E-57 | -1.69E-46 |
| MS.gene050099 | MS.gene76043 | -0.85301 | 3.17E-61 | -1.69E-46 |
| MS.gene050226 | MS.gene76043 | -0.811891 | 5.58E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene76043 | -0.821626 | 3.65E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene76043 | -0.815485 | 9.03E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene76043 | -0.822317 | 2.53E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene76043 | -0.886275 | 3.94E-72 | -1.69E-46 |
| MS.gene050319 | MS.gene76043 | 0.826265 | 2.98E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene76043 | 0.846664 | 1.88E-59 | -1.69E-46 |
| MS.gene050335 | MS.gene76043 | 0.814075 | 1.85E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene76043 | -0.832631 | 8.47E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene76043 | -0.808481 | 3.03E-50 | -1.69E-46 |
| MS.gene050516 | MS.gene76043 | -0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene76043 | -0.826941 | 2.06E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene76043 | -0.843625 | 1.25E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene76043 | 0.828486 | 8.76E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene76043 | -0.857956 | 1.15E-62 | -1.69E-46 |
| MS.gene05101 | MS.gene76043 | -0.844712 | 6.38E-59 | -1.69E-46 |
| MS.gene051171 | MS.gene76043 | -0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene76043 | 0.844718 | 6.36E-59 | -1.69E-46 |
| MS.gene051257 | MS.gene76043 | -0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene76043 | -0.859537 | 3.86E-63 | -1.69E-46 |
| MS.gene051582 | MS.gene76043 | -0.842699 | 2.20E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene76043 | -0.857151 | 1.98E-62 | -1.69E-46 |
| MS.gene051663 | MS.gene76043 | -0.848388 | 6.33E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene76043 | -0.853981 | 1.67E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene76043 | -0.843759 | 1.15E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene76043 | 0.827192 | 1.79E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene76043 | -0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene76043 | -0.879273 | 1.43E-69 | -1.69E-46 |
| MS.gene052178 | MS.gene76043 | -0.844833 | 5.92E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene76043 | -0.822782 | 1.97E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene76043 | -0.826665 | 2.40E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene76043 | -0.832417 | 9.57E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene76043 | -0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene052287 | MS.gene76043 | -0.808059 | 3.73E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene76043 | 0.823296 | 1.50E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene76043 | -0.829907 | 3.96E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene76043 | -0.839534 | 1.50E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene76043 | -0.834292 | 3.26E-56 | -1.69E-46 |
| MS.gene052344 | MS.gene76043 | 0.80792 | 3.99E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene76043 | -0.80612 | 9.60E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene76043 | -0.828514 | 8.62E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene76043 | -0.827568 | 1.46E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene76043 | -0.831285 | 1.82E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene76043 | -0.911766 | 4.19E-83 | -1.69E-46 |
| MS.gene053907 | MS.gene76043 | -0.854301 | 1.35E-61 | -1.69E-46 |
| MS.gene053928 | MS.gene76043 | -0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene053971 | MS.gene76043 | -0.832534 | 8.95E-56 | -1.69E-46 |
| MS.gene054011 | MS.gene76043 | -0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene76043 | -0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene76043 | -0.800097 | 1.69E-48 | -1.69E-46 |
| MS.gene054473 | MS.gene76043 | -0.875569 | 2.78E-68 | -1.69E-46 |
| MS.gene05455 | MS.gene76043 | -0.807903 | 4.03E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene76043 | -0.818967 | 1.49E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene76043 | -0.877957 | 4.14E-69 | -1.69E-46 |
| MS.gene054983 | MS.gene76043 | -0.832287 | 1.03E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene76043 | -0.893743 | 4.73E-75 | -1.69E-46 |
| MS.gene055303 | MS.gene76043 | -0.813619 | 2.34E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene76043 | -0.851279 | 9.84E-61 | -1.69E-46 |
| MS.gene055422 | MS.gene76043 | -0.898186 | 6.79E-77 | -1.69E-46 |
| MS.gene055428 | MS.gene76043 | -0.910369 | 2.02E-82 | -1.69E-46 |
| MS.gene05553 | MS.gene76043 | -0.8204 | 7.00E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene76043 | -0.834256 | 3.33E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene76043 | -0.82983 | 4.13E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene76043 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene056314 | MS.gene76043 | -0.832564 | 8.80E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene76043 | -0.841936 | 3.51E-58 | -1.69E-46 |
| MS.gene056451 | MS.gene76043 | -0.809595 | 1.75E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene76043 | -0.855834 | 4.83E-62 | -1.69E-46 |
| MS.gene056659 | MS.gene76043 | -0.805005 | 1.65E-49 | -1.69E-46 |
| MS.gene056772 | MS.gene76043 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene76043 | -0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene76043 | 0.808981 | 2.37E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene76043 | -0.844341 | 8.03E-59 | -1.69E-46 |
| MS.gene05702 | MS.gene76043 | -0.850114 | 2.09E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene76043 | -0.883936 | 2.94E-71 | -1.69E-46 |
| MS.gene057245 | MS.gene76043 | -0.854615 | 1.09E-61 | -1.69E-46 |
| MS.gene05733 | MS.gene76043 | -0.806238 | 9.07E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene76043 | -0.874301 | 7.52E-68 | -1.69E-46 |
| MS.gene057448 | MS.gene76043 | -0.801654 | 8.13E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene76043 | -0.813382 | 2.63E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene76043 | -0.839703 | 1.35E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene76043 | -0.878161 | 3.51E-69 | -1.69E-46 |
| MS.gene058082 | MS.gene76043 | -0.815585 | 8.57E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene76043 | -0.890763 | 7.34E-74 | -1.69E-46 |
| MS.gene058142 | MS.gene76043 | -0.853337 | 2.55E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene76043 | -0.831586 | 1.53E-55 | -1.69E-46 |
| MS.gene058276 | MS.gene76043 | -0.850608 | 1.52E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene76043 | -0.834179 | 3.48E-56 | -1.69E-46 |
| MS.gene058365 | MS.gene76043 | -0.802665 | 5.04E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene76043 | -0.854636 | 1.08E-61 | -1.69E-46 |
| MS.gene058710 | MS.gene76043 | -0.835501 | 1.62E-56 | -1.69E-46 |
| MS.gene058749 | MS.gene76043 | -0.815881 | 7.36E-52 | -1.69E-46 |
| MS.gene058833 | MS.gene76043 | -0.819924 | 8.99E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene76043 | -0.810678 | 1.02E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene76043 | -0.834821 | 2.40E-56 | -1.69E-46 |
| MS.gene059033 | MS.gene76043 | 0.837953 | 3.83E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene76043 | -0.874851 | 4.89E-68 | -1.69E-46 |
| MS.gene059285 | MS.gene76043 | -0.811626 | 6.37E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene76043 | -0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene76043 | -0.893967 | 3.84E-75 | -1.69E-46 |
| MS.gene059597 | MS.gene76043 | -0.847686 | 9.88E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene76043 | -0.840826 | 6.88E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene76043 | -0.813698 | 2.24E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene76043 | -0.832716 | 8.07E-56 | -1.69E-46 |
| MS.gene059695 | MS.gene76043 | -0.83147 | 1.64E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene76043 | -0.901584 | 2.31E-78 | -1.69E-46 |
| MS.gene059894 | MS.gene76043 | -0.880532 | 5.08E-70 | -1.69E-46 |
| MS.gene059899 | MS.gene76043 | -0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene76043 | -0.820567 | 6.41E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene76043 | -0.836376 | 9.70E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene76043 | -0.837061 | 6.49E-57 | -1.69E-46 |
| MS.gene060559 | MS.gene76043 | -0.81834 | 2.06E-52 | -1.69E-46 |
| MS.gene06090 | MS.gene76043 | -0.831976 | 1.23E-55 | -1.69E-46 |
| MS.gene060994 | MS.gene76043 | -0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene76043 | -0.878403 | 2.89E-69 | -1.69E-46 |
| MS.gene061112 | MS.gene76043 | -0.805688 | 1.18E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene76043 | 0.813056 | 3.10E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene76043 | -0.809125 | 2.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76043.t1 | MTR_1g098790 | 99.304 | 431 | 3 | 0 | 1 | 431 | 1 | 431 | 0.0 | 894 |
| MS.gene76043.t1 | MTR_2g007930 | 80.460 | 435 | 73 | 5 | 1 | 431 | 1 | 427 | 0.0 | 703 |
| MS.gene76043.t1 | MTR_2g020280 | 58.073 | 384 | 137 | 5 | 48 | 431 | 34 | 393 | 1.38e-157 | 451 |
| MS.gene76043.t1 | MTR_5g020580 | 53.636 | 440 | 171 | 11 | 1 | 431 | 1 | 416 | 1.77e-154 | 444 |
| MS.gene76043.t1 | MTR_8g077195 | 51.708 | 439 | 177 | 12 | 1 | 431 | 1 | 412 | 9.05e-146 | 421 |
| MS.gene76043.t1 | MTR_1g022370 | 48.690 | 458 | 172 | 9 | 1 | 431 | 1 | 422 | 1.06e-145 | 421 |
| MS.gene76043.t1 | MTR_1g088960 | 50.801 | 437 | 174 | 10 | 1 | 431 | 1 | 402 | 6.86e-145 | 419 |
| MS.gene76043.t1 | MTR_2g020280 | 57.547 | 318 | 111 | 5 | 114 | 431 | 1 | 294 | 2.86e-125 | 365 |
| MS.gene76043.t1 | MTR_2g076200 | 47.781 | 383 | 149 | 6 | 50 | 431 | 39 | 371 | 1.12e-119 | 353 |
| MS.gene76043.t1 | MTR_2g076210 | 43.377 | 385 | 162 | 10 | 51 | 431 | 35 | 367 | 7.39e-96 | 292 |
| MS.gene76043.t1 | MTR_8g077675 | 42.431 | 436 | 198 | 15 | 1 | 424 | 1 | 395 | 2.04e-93 | 287 |
| MS.gene76043.t1 | MTR_8g077620 | 39.492 | 433 | 202 | 17 | 1 | 422 | 1 | 384 | 2.62e-90 | 279 |
| MS.gene76043.t1 | MTR_8g077650 | 38.601 | 386 | 156 | 16 | 48 | 423 | 14 | 328 | 1.44e-62 | 205 |
| MS.gene76043.t1 | MTR_1g023800 | 50.649 | 154 | 61 | 4 | 1 | 147 | 1 | 146 | 7.71e-44 | 150 |
| MS.gene76043.t1 | MTR_8g077640 | 38.783 | 263 | 122 | 6 | 1 | 235 | 46 | 297 | 9.24e-42 | 152 |
| MS.gene76043.t1 | MTR_8g077640 | 45.098 | 102 | 41 | 3 | 322 | 421 | 295 | 383 | 1.86e-16 | 81.3 |
| MS.gene76043.t1 | MTR_0210s0010 | 40.404 | 99 | 52 | 2 | 95 | 193 | 8 | 99 | 4.96e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76043.t1 | AT1G76900 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| MS.gene76043.t1 | AT1G76900 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| MS.gene76043.t1 | AT1G76900 | 70.330 | 455 | 111 | 9 | 1 | 431 | 1 | 455 | 0.0 | 610 |
| MS.gene76043.t1 | AT1G43640 | 68.027 | 441 | 119 | 6 | 1 | 431 | 1 | 429 | 0.0 | 600 |
| MS.gene76043.t1 | AT1G25280 | 70.179 | 446 | 117 | 7 | 1 | 431 | 1 | 445 | 0.0 | 596 |
| MS.gene76043.t1 | AT1G43640 | 70.053 | 374 | 94 | 4 | 65 | 431 | 1 | 363 | 0.0 | 536 |
| MS.gene76043.t1 | AT2G47900 | 53.596 | 431 | 175 | 4 | 1 | 431 | 1 | 406 | 2.47e-165 | 471 |
| MS.gene76043.t1 | AT2G47900 | 53.596 | 431 | 175 | 4 | 1 | 431 | 1 | 406 | 2.47e-165 | 471 |
| MS.gene76043.t1 | AT2G47900 | 53.472 | 432 | 175 | 5 | 1 | 431 | 1 | 407 | 8.33e-164 | 467 |
| MS.gene76043.t1 | AT2G18280 | 53.288 | 441 | 148 | 12 | 1 | 431 | 1 | 393 | 3.53e-150 | 432 |
| MS.gene76043.t1 | AT2G18280 | 53.288 | 441 | 148 | 12 | 1 | 431 | 1 | 393 | 3.53e-150 | 432 |
| MS.gene76043.t1 | AT1G47270 | 55.181 | 386 | 135 | 5 | 48 | 431 | 39 | 388 | 4.18e-142 | 411 |
| MS.gene76043.t1 | AT1G47270 | 55.181 | 386 | 135 | 5 | 48 | 431 | 64 | 413 | 8.12e-142 | 411 |
| MS.gene76043.t1 | AT1G47270 | 55.181 | 386 | 135 | 5 | 48 | 431 | 63 | 412 | 9.87e-142 | 411 |
| MS.gene76043.t1 | AT5G18680 | 50.777 | 386 | 156 | 7 | 49 | 431 | 35 | 389 | 1.46e-130 | 382 |
| MS.gene76043.t1 | AT3G06380 | 51.706 | 381 | 149 | 9 | 53 | 431 | 33 | 380 | 5.01e-127 | 372 |
| MS.gene76043.t1 | AT1G25280 | 69.776 | 268 | 71 | 6 | 173 | 431 | 1 | 267 | 3.46e-123 | 358 |
| MS.gene76043.t1 | AT1G25280 | 69.776 | 268 | 71 | 6 | 173 | 431 | 1 | 267 | 3.46e-123 | 358 |
| MS.gene76043.t1 | AT1G53320 | 47.520 | 383 | 156 | 5 | 50 | 431 | 41 | 379 | 2.22e-118 | 350 |
| MS.gene76043.t1 | AT5G18680 | 51.227 | 326 | 126 | 6 | 108 | 431 | 3 | 297 | 3.45e-106 | 316 |
| MS.gene76043.t1 | AT3G06380 | 51.420 | 317 | 120 | 8 | 116 | 431 | 5 | 288 | 4.02e-99 | 298 |
| MS.gene76043.t1 | AT1G61940 | 55.814 | 86 | 38 | 0 | 56 | 141 | 1 | 86 | 2.75e-28 | 112 |
| MS.gene76043.t1 | AT1G61940 | 59.375 | 64 | 26 | 0 | 56 | 119 | 1 | 64 | 8.67e-20 | 88.6 |
Find 124 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATGAGCTCTGGCTGGCC+TGG | 0.187108 | 1.1:+71045099 | None:intergenic |
| ATACCCTCTCTCGGCCTTTC+AGG | 0.201509 | 1.1:-71044695 | MS.gene76043:CDS |
| GCAGCATTGCTTGTTGAAAA+TGG | 0.220754 | 1.1:-71045895 | MS.gene76043:intron |
| ATGTTGGTGCCTTAACTTTA+GGG | 0.281753 | 1.1:-71044896 | MS.gene76043:CDS |
| AATGTTGGTGCCTTAACTTT+AGG | 0.285851 | 1.1:-71044897 | MS.gene76043:CDS |
| CTTTCCGATGTAAGTGTTAC+TGG | 0.296608 | 1.1:+71045786 | None:intergenic |
| CTGTAGGTTCTCAGATATAA+TGG | 0.306980 | 1.1:-71045004 | MS.gene76043:CDS |
| CTCACCTGCTTCAGAGAAAC+AGG | 0.315099 | 1.1:+71046730 | None:intergenic |
| GAATGAGCTCTGGCTGGCCT+GGG | 0.345465 | 1.1:+71045100 | None:intergenic |
| GCCAGCTGAGCATTGTTATA+GGG | 0.349030 | 1.1:+71045303 | None:intergenic |
| CATGGGCTGTTCTGTATAAC+TGG | 0.352285 | 1.1:+71046925 | None:intergenic |
| AGCCAGCTGAGCATTGTTAT+AGG | 0.353413 | 1.1:+71045302 | None:intergenic |
| GTCGCTCCTCATGCCGCAAC+AGG | 0.364636 | 1.1:-71044811 | MS.gene76043:CDS |
| CGTGATGTGAGGGATGGATT+TGG | 0.379788 | 1.1:-71047039 | MS.gene76043:CDS |
| CTCTTCCTTTGCCTCAGTCC+TGG | 0.393245 | 1.1:-71046349 | MS.gene76043:intron |
| GAAAGAATCCTCAAGATTGC+GGG | 0.410283 | 1.1:+71045077 | None:intergenic |
| CTCTGTGCAAGTCGTTCTTC+TGG | 0.410800 | 1.1:+71045846 | None:intergenic |
| GCATGAGGAGCGACAGGTGC+AGG | 0.424142 | 1.1:+71044820 | None:intergenic |
| TAACTGCCACTAGGGACCTT+TGG | 0.430993 | 1.1:+71045237 | None:intergenic |
| TCGTGATGTTATTAAGAGAT+TGG | 0.435663 | 1.1:-71046878 | MS.gene76043:CDS |
| TTTCCCTGTTTCTCTGAAGC+AGG | 0.440467 | 1.1:-71046734 | MS.gene76043:intron |
| TGCAGTTGTTCATGCCATCT+AGG | 0.445754 | 1.1:+71044919 | None:intergenic |
| GACAAGATTATTCTTCAGTT+CGG | 0.446887 | 1.1:-71044754 | MS.gene76043:CDS |
| AATGCTCAGCTGGCTCCTCC+TGG | 0.452432 | 1.1:-71045294 | MS.gene76043:CDS |
| CCCGCTTCATCCCTCGAGCC+TGG | 0.453190 | 1.1:-71045132 | MS.gene76043:CDS |
| AAGGCTTCCTGGACATCAAA+GGG | 0.458001 | 1.1:-71046989 | MS.gene76043:CDS |
| CACAGAGTATGTTATATCAA+TGG | 0.458685 | 1.1:-71045830 | MS.gene76043:CDS |
| GAGCCTGGTGGTGTTGTCCC+AGG | 0.458781 | 1.1:-71045117 | MS.gene76043:CDS |
| TGTGCTGGCTGCGACGGAGC+AGG | 0.465017 | 1.1:+71044787 | None:intergenic |
| TGGAAGCAACTGAGAGTACT+TGG | 0.468061 | 1.1:-71046858 | MS.gene76043:CDS |
| TGTAGGTTCTCAGATATAAT+GGG | 0.470818 | 1.1:-71045003 | MS.gene76043:CDS |
| AGATTGCGGGGAATGAGCTC+TGG | 0.475959 | 1.1:+71045090 | None:intergenic |
| TGTATCATAAATTATGAACT+TGG | 0.479777 | 1.1:+71045332 | None:intergenic |
| TCCCTATAACAATGCTCAGC+TGG | 0.484175 | 1.1:-71045304 | MS.gene76043:CDS |
| AAGGGGCAAGTCGCGTAGTT+CGG | 0.484348 | 1.1:-71046971 | MS.gene76043:CDS |
| TGCGGGGAATGAGCTCTGGC+TGG | 0.484831 | 1.1:+71045094 | None:intergenic |
| GACTTGCCCCTTTGATGTCC+AGG | 0.489493 | 1.1:+71046982 | None:intergenic |
| ACCTATGAGTTGAATGTCCT+TGG | 0.490286 | 1.1:-71045198 | MS.gene76043:CDS |
| TTGTCATGGTCTGACTGTGC+TGG | 0.490534 | 1.1:+71044772 | None:intergenic |
| CCAGGCTCGAGGGATGAAGC+GGG | 0.492821 | 1.1:+71045132 | None:intergenic |
| TGAAGACGAGGAGGAGGGGA+AGG | 0.493522 | 1.1:-71044971 | MS.gene76043:CDS |
| TCACACGTCCCCTAAAGTTA+AGG | 0.494461 | 1.1:+71044887 | None:intergenic |
| TGGCAATGAAGACGAGGAGG+AGG | 0.494605 | 1.1:-71044977 | MS.gene76043:CDS |
| ACCAAGGACATTCAACTCAT+AGG | 0.504041 | 1.1:+71045197 | None:intergenic |
| TTGAATCTACGGCTGCGTCC+AGG | 0.511465 | 1.1:+71045276 | None:intergenic |
| TTAAGAACAAGTCTCCTAGA+TGG | 0.514190 | 1.1:-71044933 | MS.gene76043:CDS |
| GTTGCGGCATGAGGAGCGAC+AGG | 0.514556 | 1.1:+71044814 | None:intergenic |
| TCTGACTGTGCTGGCTGCGA+CGG | 0.514689 | 1.1:+71044781 | None:intergenic |
| GCAGGTCCTGTTGCGGCATG+AGG | 0.520662 | 1.1:+71044805 | None:intergenic |
| CATTCAACTCATAGGTGACC+TGG | 0.520911 | 1.1:+71045205 | None:intergenic |
| TGGCCTGGGACAACACCACC+AGG | 0.526446 | 1.1:+71045114 | None:intergenic |
| GAGGTTGATCATGCAACTCA+TGG | 0.527376 | 1.1:+71046947 | None:intergenic |
| CAGGACTGAGGCAAAGGAAG+AGG | 0.529546 | 1.1:+71046350 | None:intergenic |
| TTCTCAGATATAATGGGAGC+TGG | 0.533677 | 1.1:-71044997 | MS.gene76043:CDS |
| CCCATGGGCTAGCCTTCCAC+CGG | 0.534682 | 1.1:-71046908 | MS.gene76043:CDS |
| ACACTTACATCGGAAAGCTT+AGG | 0.535916 | 1.1:-71045780 | MS.gene76043:intron |
| GCGATGTTGTAACTGCCACT+AGG | 0.538385 | 1.1:+71045228 | None:intergenic |
| GTAGTATTGTTCGTGATGTG+AGG | 0.542989 | 1.1:-71047050 | MS.gene76043:CDS |
| CACGAAGAAGCTCCGGTGGA+AGG | 0.548406 | 1.1:+71046896 | None:intergenic |
| ACCAGGCTCGAGGGATGAAG+CGG | 0.552625 | 1.1:+71045131 | None:intergenic |
| TCCGGTGGAAGGCTAGCCCA+TGG | 0.553438 | 1.1:+71046907 | None:intergenic |
| TAAGGCTTCCTGGACATCAA+AGG | 0.555010 | 1.1:-71046990 | MS.gene76043:CDS |
| ATTCTTCAGTTCGGTAAAGT+CGG | 0.555879 | 1.1:-71044745 | MS.gene76043:CDS |
| TTCGTGGGCCTCTAGTACCA+AGG | 0.556399 | 1.1:+71045181 | None:intergenic |
| GCTTACCAGGACTGAGGCAA+AGG | 0.556568 | 1.1:+71046344 | None:intergenic |
| GCTCATTCCCCGCAATCTTG+AGG | 0.558110 | 1.1:-71045085 | MS.gene76043:CDS |
| TTACAGCCGGGGTATAGGGA+TGG | 0.560354 | 1.1:-71046421 | MS.gene76043:intron |
| ATAGTGCAATTCATCCTTCG+TGG | 0.560544 | 1.1:+71045165 | None:intergenic |
| ACATATCGCAAAAGCCTGAA+AGG | 0.562316 | 1.1:+71044681 | None:intergenic |
| ATAACATCACGAAGAAGCTC+CGG | 0.562691 | 1.1:+71046889 | None:intergenic |
| GGACAACACCACCAGGCTCG+AGG | 0.563929 | 1.1:+71045121 | None:intergenic |
| CGATGTTGTAACTGCCACTA+GGG | 0.565087 | 1.1:+71045229 | None:intergenic |
| GTGCTGCGGTCTGCAAGTCG+TGG | 0.571719 | 1.1:-71046810 | MS.gene76043:CDS |
| GCAACTGAGAGTACTTGGCC+TGG | 0.572741 | 1.1:-71046853 | MS.gene76043:CDS |
| ATTGTTCGTGATGTGAGGGA+TGG | 0.573863 | 1.1:-71047045 | MS.gene76043:CDS |
| CCGGTGGAAGGCTAGCCCAT+GGG | 0.574926 | 1.1:+71046908 | None:intergenic |
| TTGAATGTCCTTGGTACTAG+AGG | 0.577348 | 1.1:-71045189 | MS.gene76043:CDS |
| GGCAATGAAGACGAGGAGGA+GGG | 0.579076 | 1.1:-71044976 | MS.gene76043:CDS |
| ACTGAAGAATAATCTTGTCA+TGG | 0.579174 | 1.1:+71044758 | None:intergenic |
| GGCATGAACAACTGCAATGT+TGG | 0.579920 | 1.1:-71044912 | MS.gene76043:CDS |
| GCAATGAAGACGAGGAGGAG+GGG | 0.583215 | 1.1:-71044975 | MS.gene76043:CDS |
| GACTTGTTCTTAAGAACTAG+AGG | 0.583735 | 1.1:+71044943 | None:intergenic |
| GACTGAGGCAAAGGAAGAGG+TGG | 0.586469 | 1.1:+71046353 | None:intergenic |
| TCAACACTCTTGAATACTGT+GGG | 0.587893 | 1.1:-71046765 | MS.gene76043:CDS |
| CAGTTATACAGAACAGCCCA+TGG | 0.589286 | 1.1:-71046924 | MS.gene76043:CDS |
| CGACGGAGCAGGTCCTGTTG+CGG | 0.591288 | 1.1:+71044798 | None:intergenic |
| GGAAAGAATCCTCAAGATTG+CGG | 0.599386 | 1.1:+71045076 | None:intergenic |
| TAGTGCAATTCATCCTTCGT+GGG | 0.600652 | 1.1:+71045166 | None:intergenic |
| TGTTGGTGCCTTAACTTTAG+GGG | 0.601599 | 1.1:-71044895 | MS.gene76043:CDS |
| CAACTGAGTTTAGCAGCTGT+AGG | 0.602372 | 1.1:-71045020 | MS.gene76043:CDS |
| GTTATCGATCGATCGTGCAA+AGG | 0.614484 | 1.1:+71045044 | None:intergenic |
| GACAACACCACCAGGCTCGA+GGG | 0.616356 | 1.1:+71045122 | None:intergenic |
| GTCAACACTCTTGAATACTG+TGG | 0.616544 | 1.1:-71046766 | MS.gene76043:CDS |
| TAGTATTGTTCGTGATGTGA+GGG | 0.622920 | 1.1:-71047049 | MS.gene76043:CDS |
| GGACTATCGATACCCTCTCT+CGG | 0.623014 | 1.1:-71044704 | MS.gene76043:CDS |
| AAAGCCTGAAAGGCCGAGAG+AGG | 0.624015 | 1.1:+71044691 | None:intergenic |
| TCAGTTCGGTAAAGTCGGCA+AGG | 0.626177 | 1.1:-71044740 | MS.gene76043:CDS |
| AGCTGAGCATTGTTATAGGG+AGG | 0.628040 | 1.1:+71045306 | None:intergenic |
| GCAACCACATGCTTACGACC+AGG | 0.629724 | 1.1:+71046835 | None:intergenic |
| AGATCCAGTAACACTTACAT+CGG | 0.632514 | 1.1:-71045790 | MS.gene76043:CDS |
| CAGGCTCGAGGGATGAAGCG+GGG | 0.635955 | 1.1:+71045133 | None:intergenic |
| GCATGTGGTTGCTTGTGCTG+CGG | 0.636839 | 1.1:-71046824 | MS.gene76043:CDS |
| TGGCAGTTACAACATCGCCC+AGG | 0.640405 | 1.1:-71045223 | MS.gene76043:CDS |
| ATCGTGCAAAGGATAAACTA+CGG | 0.641987 | 1.1:+71045055 | None:intergenic |
| ACATCACGAAGAAGCTCCGG+TGG | 0.646205 | 1.1:+71046892 | None:intergenic |
| ATTCAACTCATAGGTGACCT+GGG | 0.649004 | 1.1:+71045206 | None:intergenic |
| AAGCCTGAAAGGCCGAGAGA+GGG | 0.649007 | 1.1:+71044692 | None:intergenic |
| CGGCAAGGATATGTTTACGA+TGG | 0.649091 | 1.1:-71044725 | MS.gene76043:CDS |
| GCTTCATCCCTCGAGCCTGG+TGG | 0.650835 | 1.1:-71045129 | MS.gene76043:CDS |
| AGCTGGCAATGAAGACGAGG+AGG | 0.651988 | 1.1:-71044980 | MS.gene76043:CDS |
| ATGGATTTGGAAGCTTATCG+AGG | 0.653763 | 1.1:-71047026 | MS.gene76043:CDS |
| GGGAGCTGGCAATGAAGACG+AGG | 0.656703 | 1.1:-71044983 | MS.gene76043:CDS |
| GGGCTGTTCTGTATAACTGG+AGG | 0.657426 | 1.1:+71046928 | None:intergenic |
| AAAGAATCCTCAAGATTGCG+GGG | 0.658101 | 1.1:+71045078 | None:intergenic |
| AGTTATACAGAACAGCCCAT+GGG | 0.669811 | 1.1:-71046923 | MS.gene76043:CDS |
| TTGGCCTGGTCGTAAGCATG+TGG | 0.677764 | 1.1:-71046839 | MS.gene76043:CDS |
| AATCTACGGCTGCGTCCAGG+AGG | 0.679597 | 1.1:+71045279 | None:intergenic |
| GTTTCACCAAAGGTCCCTAG+TGG | 0.689726 | 1.1:-71045243 | MS.gene76043:CDS |
| GATTTGGAAGCTTATCGAGG+CGG | 0.694204 | 1.1:-71047023 | MS.gene76043:CDS |
| ATGGGTCCATCCCTATACCC+CGG | 0.704486 | 1.1:+71046415 | None:intergenic |
| AGGCTTCCTGGACATCAAAG+GGG | 0.710405 | 1.1:-71046988 | MS.gene76043:CDS |
| AGTAAAGCTTACCAGGACTG+AGG | 0.714219 | 1.1:+71046338 | None:intergenic |
| TCACCTGCTTCAGAGAAACA+GGG | 0.717293 | 1.1:+71046731 | None:intergenic |
| TTGGTACTAGAGGCCCACGA+AGG | 0.736988 | 1.1:-71045179 | MS.gene76043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATGTTAAAAAACAAG+TGG | - | chr1.1:71045022-71045041 | MS.gene76043:CDS | 20.0% |
| !! | AAGCACATAAATGAAAAATT+AGG | + | chr1.1:71045251-71045270 | None:intergenic | 20.0% |
| !! | ATCAAATCAAATAGTGTATT+AGG | + | chr1.1:71045402-71045421 | None:intergenic | 20.0% |
| !! | CGTTAAATTCATATTTATGA+GGG | + | chr1.1:71045742-71045761 | None:intergenic | 20.0% |
| !! | TCGTTAAATTCATATTTATG+AGG | + | chr1.1:71045743-71045762 | None:intergenic | 20.0% |
| !! | TGTATCATAAATTATGAACT+TGG | + | chr1.1:71046376-71046395 | None:intergenic | 20.0% |
| !! | TTAAATAGTGAGATCTAATT+GGG | - | chr1.1:71046182-71046201 | MS.gene76043:intron | 20.0% |
| !! | TTATAATATTTAGTGTGCAA+CGG | + | chr1.1:71045214-71045233 | None:intergenic | 20.0% |
| !! | TTTAAATAGTGAGATCTAAT+TGG | - | chr1.1:71046181-71046200 | MS.gene76043:intron | 20.0% |
| !!! | AGAAACTTTTCATTTTCATA+TGG | + | chr1.1:71045641-71045660 | None:intergenic | 20.0% |
| !!! | ATATTATAAAATTTAGAGCC+TGG | - | chr1.1:71045225-71045244 | MS.gene76043:CDS | 20.0% |
| !!! | ATTTAACGAATTTTTAGATC+TGG | - | chr1.1:71045754-71045773 | MS.gene76043:intron | 20.0% |
| !!! | ATTTTTCGTAAAGTAATTCT+TGG | + | chr1.1:71046274-71046293 | None:intergenic | 20.0% |
| !!! | TGAATTTAATTTGTATGCAT+TGG | - | chr1.1:71046072-71046091 | MS.gene76043:intron | 20.0% |
| !!! | TTTTTCGTAAAGTAATTCTT+GGG | + | chr1.1:71046273-71046292 | None:intergenic | 20.0% |
| ! | ATTGTCTTGTAAAAAGTTGA+TGG | - | chr1.1:71046034-71046053 | MS.gene76043:intron | 25.0% |
| !! | TGTGTAAAATTGGTTTACAT+TGG | - | chr1.1:71046209-71046228 | MS.gene76043:intron | 25.0% |
| !!! | AATTTTTAGATCTGGTTTGT+CGG | - | chr1.1:71045762-71045781 | MS.gene76043:intron | 25.0% |
| !!! | ATATGGACTCTATTTGTTTT+AGG | - | chr1.1:71045580-71045599 | MS.gene76043:intron | 25.0% |
| AAAGAGAAAGATGAATTGCT+TGG | + | chr1.1:71045526-71045545 | None:intergenic | 30.0% | |
| AAGAAAATTAGACCTGAAAG+AGG | + | chr1.1:71046349-71046368 | None:intergenic | 30.0% | |
| ACTGAAGAATAATCTTGTCA+TGG | + | chr1.1:71046950-71046969 | None:intergenic | 30.0% | |
| CACAGAGTATGTTATATCAA+TGG | - | chr1.1:71045875-71045894 | MS.gene76043:CDS | 30.0% | |
| CACATGCACAAATATCTAAT+TGG | + | chr1.1:71046139-71046158 | None:intergenic | 30.0% | |
| CATAAATGAAAAATTAGGCC+AGG | + | chr1.1:71045246-71045265 | None:intergenic | 30.0% | |
| GACAAGATTATTCTTCAGTT+CGG | - | chr1.1:71046951-71046970 | MS.gene76043:CDS | 30.0% | |
| TAGATATTTGTGCATGTGTA+GGG | - | chr1.1:71046141-71046160 | MS.gene76043:intron | 30.0% | |
| TATTAACTTTCTCCTCTTTC+AGG | - | chr1.1:71046334-71046353 | MS.gene76043:intron | 30.0% | |
| TCGTGATGTTATTAAGAGAT+TGG | - | chr1.1:71044827-71044846 | MS.gene76043:CDS | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | - | chr1.1:71045042-71045061 | MS.gene76043:CDS | 30.0% | |
| TGTAGGTTCTCAGATATAAT+GGG | - | chr1.1:71046702-71046721 | MS.gene76043:intron | 30.0% | |
| TTAGATATTTGTGCATGTGT+AGG | - | chr1.1:71046140-71046159 | MS.gene76043:intron | 30.0% | |
| ! | CTTTTCATTTTCATATGGCA+TGG | + | chr1.1:71045636-71045655 | None:intergenic | 30.0% |
| !! | TCTTTCAGGTCTAATTTTCT+TGG | - | chr1.1:71046348-71046367 | MS.gene76043:intron | 30.0% |
| !!! | CATTTTGTTTTCGATCTGTT+TGG | - | chr1.1:71045963-71045982 | MS.gene76043:intron | 30.0% |
| !!! | CTTTTTTCGAGTTGAATCTA+CGG | + | chr1.1:71046443-71046462 | None:intergenic | 30.0% |
| !!! | TGTTGATTTTGTTTTACAGC+CGG | - | chr1.1:71045271-71045290 | MS.gene76043:CDS | 30.0% |
| ACCCTAACTGTAACAATCAT+TGG | - | chr1.1:71045094-71045113 | MS.gene76043:CDS | 35.0% | |
| AGATCCAGTAACACTTACAT+CGG | - | chr1.1:71045915-71045934 | MS.gene76043:intron | 35.0% | |
| ATCGTGCAAAGGATAAACTA+CGG | + | chr1.1:71046653-71046672 | None:intergenic | 35.0% | |
| ATTCTTCAGTTCGGTAAAGT+CGG | - | chr1.1:71046960-71046979 | MS.gene76043:CDS | 35.0% | |
| CTCGAAAAAAGTTTCACCAA+AGG | - | chr1.1:71046452-71046471 | MS.gene76043:intron | 35.0% | |
| CTGTAGGTTCTCAGATATAA+TGG | - | chr1.1:71046701-71046720 | MS.gene76043:intron | 35.0% | |
| GAATTGCTTGGATTGACAAA+GGG | + | chr1.1:71045514-71045533 | None:intergenic | 35.0% | |
| GCATGGACAACAAGAAATAT+TGG | + | chr1.1:71045619-71045638 | None:intergenic | 35.0% | |
| GCCAATGATTGTTACAGTTA+GGG | + | chr1.1:71045098-71045117 | None:intergenic | 35.0% | |
| GTAAAGTAATTCTTGGGTGA+TGG | + | chr1.1:71046267-71046286 | None:intergenic | 35.0% | |
| GTTATGAGATACTCTGTCTA+TGG | + | chr1.1:71046003-71046022 | None:intergenic | 35.0% | |
| TAATTCTGCTGAACTGCATA+TGG | - | chr1.1:71045563-71045582 | MS.gene76043:intron | 35.0% | |
| TAGTATTGTTCGTGATGTGA+GGG | - | chr1.1:71044656-71044675 | MS.gene76043:CDS | 35.0% | |
| TCAACAAAGTAAAGCTTACC+AGG | + | chr1.1:71045377-71045396 | None:intergenic | 35.0% | |
| TCAACACTCTTGAATACTGT+GGG | - | chr1.1:71044940-71044959 | MS.gene76043:CDS | 35.0% | |
| TCAGGAGATTAGTAGAAGTT+TGG | + | chr1.1:71045120-71045139 | None:intergenic | 35.0% | |
| TGAATTGCTTGGATTGACAA+AGG | + | chr1.1:71045515-71045534 | None:intergenic | 35.0% | |
| TTAAGAACAAGTCTCCTAGA+TGG | - | chr1.1:71046772-71046791 | MS.gene76043:CDS | 35.0% | |
| TTACAGTTAGGGTTCAAAGT+CGG | + | chr1.1:71045087-71045106 | None:intergenic | 35.0% | |
| TTATGAGTTATCGCATTTCG+TGG | - | chr1.1:71045472-71045491 | MS.gene76043:intron | 35.0% | |
| ! | AATGTTGGTGCCTTAACTTT+AGG | - | chr1.1:71046808-71046827 | MS.gene76043:CDS | 35.0% |
| ! | ATGTTGGTGCCTTAACTTTA+GGG | - | chr1.1:71046809-71046828 | MS.gene76043:CDS | 35.0% |
| ! | CTTTTGATGAAACACTGGAT+GGG | + | chr1.1:71045311-71045330 | None:intergenic | 35.0% |
| ! | GACTTGTTCTTAAGAACTAG+AGG | + | chr1.1:71046765-71046784 | None:intergenic | 35.0% |
| ! | TCTTTTGATGAAACACTGGA+TGG | + | chr1.1:71045312-71045331 | None:intergenic | 35.0% |
| ! | TGTCTCTTTTGATGAAACAC+TGG | + | chr1.1:71045316-71045335 | None:intergenic | 35.0% |
| !!! | GGTTCAATTTTTTGCTATGC+TGG | - | chr1.1:71045678-71045697 | MS.gene76043:intron | 35.0% |
| !!! | GTTGATTTTGTTTTACAGCC+GGG | - | chr1.1:71045272-71045291 | MS.gene76043:CDS | 35.0% |
| !!! | TTGATTTTGTTTTACAGCCG+GGG | - | chr1.1:71045273-71045292 | MS.gene76043:CDS | 35.0% |
| AAAGAATCCTCAAGATTGCG+GGG | + | chr1.1:71046630-71046649 | None:intergenic | 40.0% | |
| AACGACAGGGTTAAGACAAA+AGG | - | chr1.1:71045167-71045186 | MS.gene76043:CDS | 40.0% | |
| ACACTTACATCGGAAAGCTT+AGG | - | chr1.1:71045925-71045944 | MS.gene76043:intron | 40.0% | |
| ACATATCGCAAAAGCCTGAA+AGG | + | chr1.1:71047027-71047046 | None:intergenic | 40.0% | |
| ACCAAGGACATTCAACTCAT+AGG | + | chr1.1:71046511-71046530 | None:intergenic | 40.0% | |
| AGTTATACAGAACAGCCCAT+GGG | - | chr1.1:71044782-71044801 | MS.gene76043:CDS | 40.0% | |
| ATAACATCACGAAGAAGCTC+CGG | + | chr1.1:71044819-71044838 | None:intergenic | 40.0% | |
| ATAGTGCAATTCATCCTTCG+TGG | + | chr1.1:71046543-71046562 | None:intergenic | 40.0% | |
| ATGGATTTGGAAGCTTATCG+AGG | - | chr1.1:71044679-71044698 | MS.gene76043:CDS | 40.0% | |
| ATTCAACTCATAGGTGACCT+GGG | + | chr1.1:71046502-71046521 | None:intergenic | 40.0% | |
| ATTGAACCAACACGCAAAGT+AGG | + | chr1.1:71045666-71045685 | None:intergenic | 40.0% | |
| ATTGGGCGTCTGTGTAAAAT+TGG | - | chr1.1:71046199-71046218 | MS.gene76043:intron | 40.0% | |
| CTTTCCGATGTAAGTGTTAC+TGG | + | chr1.1:71045922-71045941 | None:intergenic | 40.0% | |
| GAAAGAATCCTCAAGATTGC+GGG | + | chr1.1:71046631-71046650 | None:intergenic | 40.0% | |
| GGAAAGAATCCTCAAGATTG+CGG | + | chr1.1:71046632-71046651 | None:intergenic | 40.0% | |
| GGCCAATGATTGTTACAGTT+AGG | + | chr1.1:71045099-71045118 | None:intergenic | 40.0% | |
| GTAGTATTGTTCGTGATGTG+AGG | - | chr1.1:71044655-71044674 | MS.gene76043:CDS | 40.0% | |
| GTCAACACTCTTGAATACTG+TGG | - | chr1.1:71044939-71044958 | MS.gene76043:CDS | 40.0% | |
| TACATCGGAAAGCTTAGGTA+TGG | - | chr1.1:71045930-71045949 | MS.gene76043:intron | 40.0% | |
| TAGTGCAATTCATCCTTCGT+GGG | + | chr1.1:71046542-71046561 | None:intergenic | 40.0% | |
| TTCTATCCTACTTTGCGTGT+TGG | - | chr1.1:71045657-71045676 | MS.gene76043:intron | 40.0% | |
| TTGAATGTCCTTGGTACTAG+AGG | - | chr1.1:71046516-71046535 | MS.gene76043:intron | 40.0% | |
| ! | ACCTATGAGTTGAATGTCCT+TGG | - | chr1.1:71046507-71046526 | MS.gene76043:intron | 40.0% |
| ! | GCAGCATTGCTTGTTGAAAA+TGG | - | chr1.1:71045810-71045829 | MS.gene76043:CDS | 40.0% |
| ! | TGTTGGTGCCTTAACTTTAG+GGG | - | chr1.1:71046810-71046829 | MS.gene76043:CDS | 40.0% |
| ! | TTCTCAGATATAATGGGAGC+TGG | - | chr1.1:71046708-71046727 | MS.gene76043:intron | 40.0% |
| ! | TTCTTGGGTGATGGCAAAAA+AGG | + | chr1.1:71046258-71046277 | None:intergenic | 40.0% |
| ! | TTTTCAACAAGCAATGCTGC+AGG | + | chr1.1:71045810-71045829 | None:intergenic | 40.0% |
| AAGGCTTCCTGGACATCAAA+GGG | - | chr1.1:71044716-71044735 | MS.gene76043:CDS | 45.0% | |
| AATCTCCTGACCGATTACCA+GGG | - | chr1.1:71045130-71045149 | MS.gene76043:CDS | 45.0% | |
| AGTAAAGCTTACCAGGACTG+AGG | + | chr1.1:71045370-71045389 | None:intergenic | 45.0% | |
| ATTGTTCGTGATGTGAGGGA+TGG | - | chr1.1:71044660-71044679 | MS.gene76043:CDS | 45.0% | |
| CAACTGAGTTTAGCAGCTGT+AGG | - | chr1.1:71046685-71046704 | MS.gene76043:intron | 45.0% | |
| CAGTTATACAGAACAGCCCA+TGG | - | chr1.1:71044781-71044800 | MS.gene76043:CDS | 45.0% | |
| CATTCAACTCATAGGTGACC+TGG | + | chr1.1:71046503-71046522 | None:intergenic | 45.0% | |
| CGATGTTGTAACTGCCACTA+GGG | + | chr1.1:71046479-71046498 | None:intergenic | 45.0% | |
| CGGCAAGGATATGTTTACGA+TGG | - | chr1.1:71046980-71046999 | MS.gene76043:CDS | 45.0% | |
| GATTTGGAAGCTTATCGAGG+CGG | - | chr1.1:71044682-71044701 | MS.gene76043:CDS | 45.0% | |
| GGCATGAACAACTGCAATGT+TGG | - | chr1.1:71046793-71046812 | MS.gene76043:CDS | 45.0% | |
| GTTATCGATCGATCGTGCAA+AGG | + | chr1.1:71046664-71046683 | None:intergenic | 45.0% | |
| TAAGGCTTCCTGGACATCAA+AGG | - | chr1.1:71044715-71044734 | MS.gene76043:CDS | 45.0% | |
| TAATCTCCTGACCGATTACC+AGG | - | chr1.1:71045129-71045148 | MS.gene76043:CDS | 45.0% | |
| TCACACGTCCCCTAAAGTTA+AGG | + | chr1.1:71046821-71046840 | None:intergenic | 45.0% | |
| TCACCTGCTTCAGAGAAACA+GGG | + | chr1.1:71044977-71044996 | None:intergenic | 45.0% | |
| TCCCTATAACAATGCTCAGC+TGG | - | chr1.1:71046401-71046420 | MS.gene76043:CDS | 45.0% | |
| TGCAGTTGTTCATGCCATCT+AGG | + | chr1.1:71046789-71046808 | None:intergenic | 45.0% | |
| ! | AGCCAGCTGAGCATTGTTAT+AGG | + | chr1.1:71046406-71046425 | None:intergenic | 45.0% |
| ! | AGCTGAGCATTGTTATAGGG+AGG | + | chr1.1:71046402-71046421 | None:intergenic | 45.0% |
| ! | CATGGGCTGTTCTGTATAAC+TGG | + | chr1.1:71044783-71044802 | None:intergenic | 45.0% |
| ! | GAGGTTGATCATGCAACTCA+TGG | + | chr1.1:71044761-71044780 | None:intergenic | 45.0% |
| ! | GCCAGCTGAGCATTGTTATA+GGG | + | chr1.1:71046405-71046424 | None:intergenic | 45.0% |
| ! | TGTTTTACAGCCGGGGTATA+GGG | - | chr1.1:71045280-71045299 | MS.gene76043:CDS | 45.0% |
| !! | TGGAAGCAACTGAGAGTACT+TGG | - | chr1.1:71044847-71044866 | MS.gene76043:CDS | 45.0% |
| !! | TTGTTTTACAGCCGGGGTAT+AGG | - | chr1.1:71045279-71045298 | MS.gene76043:CDS | 45.0% |
| !! | TTTCCCTGTTTCTCTGAAGC+AGG | - | chr1.1:71044971-71044990 | MS.gene76043:CDS | 45.0% |
| !!! | AGTTTTGAGGTAAGGCTTCC+TGG | - | chr1.1:71044705-71044724 | MS.gene76043:CDS | 45.0% |
| AGGCTTCCTGGACATCAAAG+GGG | - | chr1.1:71044717-71044736 | MS.gene76043:CDS | 50.0% | |
| ATCTCCTGACCGATTACCAG+GGG | - | chr1.1:71045131-71045150 | MS.gene76043:CDS | 50.0% | |
| CTCACCTGCTTCAGAGAAAC+AGG | + | chr1.1:71044978-71044997 | None:intergenic | 50.0% | |
| CTCTGTGCAAGTCGTTCTTC+TGG | + | chr1.1:71045862-71045881 | None:intergenic | 50.0% | |
| GCGATGTTGTAACTGCCACT+AGG | + | chr1.1:71046480-71046499 | None:intergenic | 50.0% | |
| GGACTATCGATACCCTCTCT+CGG | - | chr1.1:71047001-71047020 | MS.gene76043:CDS | 50.0% | |
| GGGCTGTTCTGTATAACTGG+AGG | + | chr1.1:71044780-71044799 | None:intergenic | 50.0% | |
| GTTTCACCAAAGGTCCCTAG+TGG | - | chr1.1:71046462-71046481 | MS.gene76043:intron | 50.0% | |
| TAACTGCCACTAGGGACCTT+TGG | + | chr1.1:71046471-71046490 | None:intergenic | 50.0% | |
| TCAGTTCGGTAAAGTCGGCA+AGG | - | chr1.1:71046965-71046984 | MS.gene76043:CDS | 50.0% | |
| TCTTAACCCTGTCGTTCCCA+GGG | + | chr1.1:71045163-71045182 | None:intergenic | 50.0% | |
| TTGTCATGGTCTGACTGTGC+TGG | + | chr1.1:71046936-71046955 | None:intergenic | 50.0% | |
| ! | CGTGATGTGAGGGATGGATT+TGG | - | chr1.1:71044666-71044685 | MS.gene76043:CDS | 50.0% |
| ! | CTTATCGAGGCGGAGTTTTG+AGG | - | chr1.1:71044692-71044711 | MS.gene76043:CDS | 50.0% |
| AAAGCCTGAAAGGCCGAGAG+AGG | + | chr1.1:71047017-71047036 | None:intergenic | 55.0% | |
| AAGCCTGAAAGGCCGAGAGA+GGG | + | chr1.1:71047016-71047035 | None:intergenic | 55.0% | |
| AAGGGGCAAGTCGCGTAGTT+CGG | - | chr1.1:71044734-71044753 | MS.gene76043:CDS | 55.0% | |
| ACATCACGAAGAAGCTCCGG+TGG | + | chr1.1:71044816-71044835 | None:intergenic | 55.0% | |
| AGATTGCGGGGAATGAGCTC+TGG | + | chr1.1:71046618-71046637 | None:intergenic | 55.0% | |
| AGCTGGCAATGAAGACGAGG+AGG | - | chr1.1:71046725-71046744 | MS.gene76043:intron | 55.0% | |
| ATACCCTCTCTCGGCCTTTC+AGG | - | chr1.1:71047010-71047029 | MS.gene76043:CDS | 55.0% | |
| ATGGGTCCATCCCTATACCC+CGG | + | chr1.1:71045293-71045312 | None:intergenic | 55.0% | |
| CAGGACTGAGGCAAAGGAAG+AGG | + | chr1.1:71045358-71045377 | None:intergenic | 55.0% | |
| CTCTTCCTTTGCCTCAGTCC+TGG | - | chr1.1:71045356-71045375 | MS.gene76043:intron | 55.0% | |
| CTTAACCCTGTCGTTCCCAG+GGG | + | chr1.1:71045162-71045181 | None:intergenic | 55.0% | |
| GACTGAGGCAAAGGAAGAGG+TGG | + | chr1.1:71045355-71045374 | None:intergenic | 55.0% | |
| GACTTGCCCCTTTGATGTCC+AGG | + | chr1.1:71044726-71044745 | None:intergenic | 55.0% | |
| GCAACCACATGCTTACGACC+AGG | + | chr1.1:71044873-71044892 | None:intergenic | 55.0% | |
| GCAATGAAGACGAGGAGGAG+GGG | - | chr1.1:71046730-71046749 | MS.gene76043:intron | 55.0% | |
| GCATGTGGTTGCTTGTGCTG+CGG | - | chr1.1:71044881-71044900 | MS.gene76043:CDS | 55.0% | |
| GCTCATTCCCCGCAATCTTG+AGG | - | chr1.1:71046620-71046639 | MS.gene76043:intron | 55.0% | |
| GCTTACCAGGACTGAGGCAA+AGG | + | chr1.1:71045364-71045383 | None:intergenic | 55.0% | |
| GGCAATGAAGACGAGGAGGA+GGG | - | chr1.1:71046729-71046748 | MS.gene76043:intron | 55.0% | |
| GTCTTAACCCTGTCGTTCCC+AGG | + | chr1.1:71045164-71045183 | None:intergenic | 55.0% | |
| TGGCAATGAAGACGAGGAGG+AGG | - | chr1.1:71046728-71046747 | MS.gene76043:intron | 55.0% | |
| TGGCAGTTACAACATCGCCC+AGG | - | chr1.1:71046482-71046501 | MS.gene76043:intron | 55.0% | |
| TTACAGCCGGGGTATAGGGA+TGG | - | chr1.1:71045284-71045303 | MS.gene76043:CDS | 55.0% | |
| TTCGTGGGCCTCTAGTACCA+AGG | + | chr1.1:71046527-71046546 | None:intergenic | 55.0% | |
| TTGAATCTACGGCTGCGTCC+AGG | + | chr1.1:71046432-71046451 | None:intergenic | 55.0% | |
| TTGGCCTGGTCGTAAGCATG+TGG | - | chr1.1:71044866-71044885 | MS.gene76043:CDS | 55.0% | |
| TTGGTACTAGAGGCCCACGA+AGG | - | chr1.1:71046526-71046545 | MS.gene76043:intron | 55.0% | |
| !! | GCAACTGAGAGTACTTGGCC+TGG | - | chr1.1:71044852-71044871 | MS.gene76043:CDS | 55.0% |
| !!! | CGAGGCGGAGTTTTGAGGTA+AGG | - | chr1.1:71044697-71044716 | MS.gene76043:CDS | 55.0% |
| AAGGCCCCTGGTAATCGGTC+AGG | + | chr1.1:71045138-71045157 | None:intergenic | 60.0% | |
| AATCTACGGCTGCGTCCAGG+AGG | + | chr1.1:71046429-71046448 | None:intergenic | 60.0% | |
| ACCAGGCTCGAGGGATGAAG+CGG | + | chr1.1:71046577-71046596 | None:intergenic | 60.0% | |
| ATTACCAGGGGCCTTTCCCC+TGG | - | chr1.1:71045143-71045162 | MS.gene76043:CDS | 60.0% | |
| CACGAAGAAGCTCCGGTGGA+AGG | + | chr1.1:71044812-71044831 | None:intergenic | 60.0% | |
| CCTTTCCCCTGGGAACGACA+GGG | - | chr1.1:71045154-71045173 | MS.gene76043:CDS | 60.0% | |
| GACAACACCACCAGGCTCGA+GGG | + | chr1.1:71046586-71046605 | None:intergenic | 60.0% | |
| GGGAGCTGGCAATGAAGACG+AGG | - | chr1.1:71046722-71046741 | MS.gene76043:intron | 60.0% | |
| GGGGAAAGGCCCCTGGTAAT+CGG | + | chr1.1:71045143-71045162 | None:intergenic | 60.0% | |
| TGAAGACGAGGAGGAGGGGA+AGG | - | chr1.1:71046734-71046753 | MS.gene76043:intron | 60.0% | |
| TTACCAGGGGCCTTTCCCCT+GGG | - | chr1.1:71045144-71045163 | MS.gene76043:CDS | 60.0% | |
| ! | AATGCTCAGCTGGCTCCTCC+TGG | - | chr1.1:71046411-71046430 | MS.gene76043:CDS | 60.0% |
| !! | GAATGAGCTCTGGCTGGCCT+GGG | + | chr1.1:71046608-71046627 | None:intergenic | 60.0% |
| !! | TCTGACTGTGCTGGCTGCGA+CGG | + | chr1.1:71046927-71046946 | None:intergenic | 60.0% |
| CAGGCTCGAGGGATGAAGCG+GGG | + | chr1.1:71046575-71046594 | None:intergenic | 65.0% | |
| CCAGGCTCGAGGGATGAAGC+GGG | + | chr1.1:71046576-71046595 | None:intergenic | 65.0% | |
| CCCTGTCGTTCCCAGGGGAA+AGG | + | chr1.1:71045157-71045176 | None:intergenic | 65.0% | |
| CGACGGAGCAGGTCCTGTTG+CGG | + | chr1.1:71046910-71046929 | None:intergenic | 65.0% | |
| GCAGGTCCTGTTGCGGCATG+AGG | + | chr1.1:71046903-71046922 | None:intergenic | 65.0% | |
| GCATGAGGAGCGACAGGTGC+AGG | + | chr1.1:71046888-71046907 | None:intergenic | 65.0% | |
| GCCTTTCCCCTGGGAACGAC+AGG | - | chr1.1:71045153-71045172 | MS.gene76043:CDS | 65.0% | |
| GCTTCATCCCTCGAGCCTGG+TGG | - | chr1.1:71046576-71046595 | MS.gene76043:intron | 65.0% | |
| GGACAACACCACCAGGCTCG+AGG | + | chr1.1:71046587-71046606 | None:intergenic | 65.0% | |
| GTCGCTCCTCATGCCGCAAC+AGG | - | chr1.1:71046894-71046913 | MS.gene76043:CDS | 65.0% | |
| GTGCTGCGGTCTGCAAGTCG+TGG | - | chr1.1:71044895-71044914 | MS.gene76043:CDS | 65.0% | |
| GTTGCGGCATGAGGAGCGAC+AGG | + | chr1.1:71046894-71046913 | None:intergenic | 65.0% | |
| TGGCCTGGGACAACACCACC+AGG | + | chr1.1:71046594-71046613 | None:intergenic | 65.0% | |
| ! | CCGGTGGAAGGCTAGCCCAT+GGG | + | chr1.1:71044800-71044819 | None:intergenic | 65.0% |
| ! | GGAATGAGCTCTGGCTGGCC+TGG | + | chr1.1:71046609-71046628 | None:intergenic | 65.0% |
| ! | TCCGGTGGAAGGCTAGCCCA+TGG | + | chr1.1:71044801-71044820 | None:intergenic | 65.0% |
| ! | TGCGGGGAATGAGCTCTGGC+TGG | + | chr1.1:71046614-71046633 | None:intergenic | 65.0% |
| !! | CCCATGGGCTAGCCTTCCAC+CGG | - | chr1.1:71044797-71044816 | MS.gene76043:CDS | 65.0% |
| !! | GAGCCTGGTGGTGTTGTCCC+AGG | - | chr1.1:71046588-71046607 | MS.gene76043:intron | 65.0% |
| CCCGCTTCATCCCTCGAGCC+TGG | - | chr1.1:71046573-71046592 | MS.gene76043:intron | 70.0% | |
| GTTCCCAGGGGAAAGGCCCC+TGG | + | chr1.1:71045150-71045169 | None:intergenic | 70.0% | |
| !! | TGTGCTGGCTGCGACGGAGC+AGG | + | chr1.1:71046921-71046940 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 71044645 | 71047082 | 71044645 | ID=MS.gene76043 |
| chr1.1 | mRNA | 71044645 | 71047082 | 71044645 | ID=MS.gene76043.t1;Parent=MS.gene76043 |
| chr1.1 | exon | 71046735 | 71047082 | 71046735 | ID=MS.gene76043.t1.exon1;Parent=MS.gene76043.t1 |
| chr1.1 | CDS | 71046735 | 71047082 | 71046735 | ID=cds.MS.gene76043.t1;Parent=MS.gene76043.t1 |
| chr1.1 | exon | 71046350 | 71046437 | 71046350 | ID=MS.gene76043.t1.exon2;Parent=MS.gene76043.t1 |
| chr1.1 | CDS | 71046350 | 71046437 | 71046350 | ID=cds.MS.gene76043.t1;Parent=MS.gene76043.t1 |
| chr1.1 | exon | 71045781 | 71045913 | 71045781 | ID=MS.gene76043.t1.exon3;Parent=MS.gene76043.t1 |
| chr1.1 | CDS | 71045781 | 71045913 | 71045781 | ID=cds.MS.gene76043.t1;Parent=MS.gene76043.t1 |
| chr1.1 | exon | 71044645 | 71045371 | 71044645 | ID=MS.gene76043.t1.exon4;Parent=MS.gene76043.t1 |
| chr1.1 | CDS | 71044645 | 71045371 | 71044645 | ID=cds.MS.gene76043.t1;Parent=MS.gene76043.t1 |
| Gene Sequence |
| Protein sequence |
