Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061886.t1 | XP_003625490.1 | 98.8 | 241 | 3 | 0 | 1 | 241 | 1 | 241 | 1.30E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061886.t1 | Q2HT93 | 98.8 | 241 | 3 | 0 | 1 | 241 | 1 | 241 | 9.1e-123 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene061886 | 0.81049 | 1.12E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene061886 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene061886 | 0.876586 | 1.24E-68 | -1.69E-46 |
| MS.gene049285 | MS.gene061886 | 0.829944 | 3.88E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene061886 | 0.832477 | 9.24E-56 | -1.69E-46 |
| MS.gene049600 | MS.gene061886 | 0.804392 | 2.21E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene061886 | 0.836976 | 6.82E-57 | -1.69E-46 |
| MS.gene049657 | MS.gene061886 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene05010 | MS.gene061886 | 0.852642 | 4.04E-61 | -1.69E-46 |
| MS.gene050170 | MS.gene061886 | 0.889297 | 2.75E-73 | -1.69E-46 |
| MS.gene050216 | MS.gene061886 | 0.843246 | 1.58E-58 | -1.69E-46 |
| MS.gene050323 | MS.gene061886 | 0.897816 | 9.74E-77 | -1.69E-46 |
| MS.gene050496 | MS.gene061886 | 0.892147 | 2.07E-74 | -1.69E-46 |
| MS.gene050502 | MS.gene061886 | 0.833533 | 5.05E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene061886 | 0.850284 | 1.88E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene061886 | 0.829429 | 5.17E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene061886 | 0.830977 | 2.17E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene061886 | 0.846618 | 1.94E-59 | -1.69E-46 |
| MS.gene050662 | MS.gene061886 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene061886 | 0.841563 | 4.40E-58 | -1.69E-46 |
| MS.gene050697 | MS.gene061886 | 0.872004 | 4.43E-67 | -1.69E-46 |
| MS.gene050699 | MS.gene061886 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene061886 | 0.813225 | 2.85E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene061886 | 0.827014 | 1.98E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene061886 | 0.882456 | 1.03E-70 | -1.69E-46 |
| MS.gene050871 | MS.gene061886 | 0.884463 | 1.88E-71 | -1.69E-46 |
| MS.gene050876 | MS.gene061886 | 0.829612 | 4.67E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene061886 | 0.847712 | 9.72E-60 | -1.69E-46 |
| MS.gene050986 | MS.gene061886 | 0.843233 | 1.59E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene061886 | 0.873402 | 1.51E-67 | -1.69E-46 |
| MS.gene051317 | MS.gene061886 | 0.827493 | 1.52E-54 | -1.69E-46 |
| MS.gene051509 | MS.gene061886 | 0.815661 | 8.25E-52 | -1.69E-46 |
| MS.gene051941 | MS.gene061886 | 0.817229 | 3.68E-52 | -1.69E-46 |
| MS.gene052066 | MS.gene061886 | 0.83901 | 2.05E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene061886 | 0.851484 | 8.62E-61 | -1.69E-46 |
| MS.gene052482 | MS.gene061886 | 0.839558 | 1.47E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene061886 | 0.84557 | 3.74E-59 | -1.69E-46 |
| MS.gene052503 | MS.gene061886 | 0.818588 | 1.81E-52 | -1.69E-46 |
| MS.gene052504 | MS.gene061886 | 0.821487 | 3.93E-53 | -1.69E-46 |
| MS.gene052506 | MS.gene061886 | 0.838065 | 3.59E-57 | -1.69E-46 |
| MS.gene052822 | MS.gene061886 | 0.845914 | 3.02E-59 | -1.69E-46 |
| MS.gene052823 | MS.gene061886 | 0.814026 | 1.90E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene061886 | 0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene061886 | 0.844327 | 8.10E-59 | -1.69E-46 |
| MS.gene052987 | MS.gene061886 | 0.810551 | 1.09E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene061886 | 0.827806 | 1.28E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene061886 | 0.801299 | 9.62E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene061886 | -0.808157 | 3.55E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene061886 | 0.813737 | 2.20E-51 | -1.69E-46 |
| MS.gene053480 | MS.gene061886 | 0.806717 | 7.18E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene061886 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene061886 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene053633 | MS.gene061886 | 0.868334 | 7.05E-66 | -1.69E-46 |
| MS.gene053824 | MS.gene061886 | 0.835102 | 2.04E-56 | -1.69E-46 |
| MS.gene053916 | MS.gene061886 | 0.807608 | 4.65E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene061886 | 0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene054595 | MS.gene061886 | 0.835202 | 1.92E-56 | -1.69E-46 |
| MS.gene054706 | MS.gene061886 | -0.817252 | 3.63E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene061886 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene061886 | 0.86612 | 3.60E-65 | -1.69E-46 |
| MS.gene055362 | MS.gene061886 | 0.823623 | 1.25E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene061886 | 0.830403 | 2.99E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene061886 | 0.835505 | 1.61E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene061886 | 0.836289 | 1.02E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene061886 | 0.852106 | 5.74E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene061886 | 0.853351 | 2.53E-61 | -1.69E-46 |
| MS.gene055776 | MS.gene061886 | 0.866505 | 2.71E-65 | -1.69E-46 |
| MS.gene05589 | MS.gene061886 | 0.887474 | 1.38E-72 | -1.69E-46 |
| MS.gene056046 | MS.gene061886 | 0.875821 | 2.28E-68 | -1.69E-46 |
| MS.gene056387 | MS.gene061886 | 0.873632 | 1.27E-67 | -1.69E-46 |
| MS.gene056446 | MS.gene061886 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene061886 | 0.908209 | 2.19E-81 | -1.69E-46 |
| MS.gene056510 | MS.gene061886 | 0.871175 | 8.35E-67 | -1.69E-46 |
| MS.gene056657 | MS.gene061886 | 0.843283 | 1.54E-58 | -1.69E-46 |
| MS.gene056878 | MS.gene061886 | 0.81384 | 2.09E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene061886 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene061886 | 0.822928 | 1.82E-53 | -1.69E-46 |
| MS.gene057687 | MS.gene061886 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene057857 | MS.gene061886 | 0.803066 | 4.16E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene061886 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene05787 | MS.gene061886 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene061886 | 0.837416 | 5.27E-57 | -1.69E-46 |
| MS.gene058171 | MS.gene061886 | -0.811075 | 8.39E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene061886 | -0.804076 | 2.57E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene061886 | -0.813749 | 2.19E-51 | -1.69E-46 |
| MS.gene058268 | MS.gene061886 | -0.801906 | 7.22E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene061886 | -0.811816 | 5.79E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene061886 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene061886 | 0.816908 | 4.34E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene061886 | 0.813917 | 2.01E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene061886 | 0.806897 | 6.58E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene061886 | 0.838313 | 3.10E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene061886 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene061886 | 0.830061 | 3.63E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene061886 | 0.840719 | 7.34E-58 | -1.69E-46 |
| MS.gene059667 | MS.gene061886 | 0.807046 | 6.12E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene061886 | 0.814786 | 1.29E-51 | -1.69E-46 |
| MS.gene059699 | MS.gene061886 | -0.823757 | 1.17E-53 | -1.69E-46 |
| MS.gene059701 | MS.gene061886 | -0.813967 | 1.96E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene061886 | -0.838987 | 2.07E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene061886 | 0.819222 | 1.30E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene061886 | 0.84081 | 6.95E-58 | -1.69E-46 |
| MS.gene059865 | MS.gene061886 | 0.886948 | 2.19E-72 | -1.69E-46 |
| MS.gene06000 | MS.gene061886 | 0.871405 | 7.01E-67 | -1.69E-46 |
| MS.gene060482 | MS.gene061886 | 0.813744 | 2.19E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene061886 | -0.836821 | 7.48E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene061886 | 0.848345 | 6.50E-60 | -1.69E-46 |
| MS.gene060762 | MS.gene061886 | 0.84954 | 3.03E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene061886 | 0.899494 | 1.87E-77 | -1.69E-46 |
| MS.gene06077 | MS.gene061886 | 0.843594 | 1.27E-58 | -1.69E-46 |
| MS.gene06097 | MS.gene061886 | 0.826219 | 3.06E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene061886 | 0.895584 | 8.34E-76 | -1.69E-46 |
| MS.gene061044 | MS.gene061886 | -0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene061218 | MS.gene061886 | 0.840736 | 7.26E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061886.t1 | MTR_7g099710 | 98.755 | 241 | 3 | 0 | 1 | 241 | 1 | 241 | 1.93e-167 | 482 |
| MS.gene061886.t1 | MTR_7g073075 | 86.869 | 99 | 10 | 1 | 74 | 169 | 9 | 107 | 4.05e-53 | 167 |
| MS.gene061886.t1 | MTR_2g096670 | 48.908 | 229 | 114 | 2 | 14 | 241 | 18 | 244 | 1.98e-52 | 181 |
| MS.gene061886.t1 | MTR_7g063050 | 84.848 | 99 | 12 | 1 | 74 | 169 | 9 | 107 | 1.98e-50 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061886.t1 | AT2G28780 | 43.111 | 225 | 124 | 3 | 14 | 237 | 10 | 231 | 1.29e-46 | 165 |
| MS.gene061886.t1 | AT3G09450 | 47.143 | 210 | 105 | 4 | 11 | 216 | 2 | 209 | 5.91e-45 | 160 |
Find 61 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAATGTAACCCTTTAT+AGG | 0.227954 | 7.4:-10627283 | None:intergenic |
| CGTCAACAAGTGTGTCGATT+TGG | 0.272339 | 7.4:-10627515 | None:intergenic |
| ATATAGCCCTCAACCTATAA+AGG | 0.287495 | 7.4:+10627270 | MS.gene061886:CDS |
| TTATAGGTTGAGGGCTATAT+AGG | 0.300994 | 7.4:-10627267 | None:intergenic |
| TGGAGCTATAGCTTCTGTTC+TGG | 0.352610 | 7.4:+10627648 | MS.gene061886:CDS |
| GCTGCGCTGGCAGTGGCTAC+CGG | 0.363670 | 7.4:+10627472 | MS.gene061886:CDS |
| CATACAGTTGCCGAAGTTAT+CGG | 0.375339 | 7.4:-10627449 | None:intergenic |
| TCCTGTTGTGGAGAGGTACT+TGG | 0.379008 | 7.4:-10629864 | None:intergenic |
| GTCAACAAGTGTGTCGATTT+GGG | 0.380204 | 7.4:-10627514 | None:intergenic |
| CCAGTGTAGTTGTGATACTA+TGG | 0.386508 | 7.4:-10629898 | None:intergenic |
| ACCTTAGCATGCAGCATAGT+TGG | 0.394869 | 7.4:+10627235 | MS.gene061886:CDS |
| CTGTATGGCTGCGCTGGCAG+TGG | 0.396194 | 7.4:+10627465 | MS.gene061886:CDS |
| TATAGGTTGAGGGCTATATA+GGG | 0.405330 | 7.4:-10627266 | None:intergenic |
| ATGTAACCCTTTATAGGTTG+AGG | 0.416760 | 7.4:-10627277 | None:intergenic |
| GTGACGCCGTTAGAGGTTGT+TGG | 0.421688 | 7.4:+10627362 | MS.gene061886:CDS |
| ACCACCTTCTTTAAAATGTC+AGG | 0.424833 | 7.4:+10627145 | None:intergenic |
| ACACTTGGTGACGCCGTTAG+AGG | 0.424878 | 7.4:+10627355 | MS.gene061886:CDS |
| ATACAGTTGCCGAAGTTATC+GGG | 0.436138 | 7.4:-10627448 | None:intergenic |
| CGACACACTTGTTGACGAAA+AGG | 0.437706 | 7.4:+10627521 | MS.gene061886:CDS |
| GCCAAGTACCTCTCCACAAC+AGG | 0.438296 | 7.4:+10629863 | MS.gene061886:CDS |
| TGTAACCCTTTATAGGTTGA+GGG | 0.455045 | 7.4:-10627276 | None:intergenic |
| CGATAACTTCGGCAACTGTA+TGG | 0.455133 | 7.4:+10627450 | MS.gene061886:CDS |
| TGCTGCCCCTGCCCTATCCT+CGG | 0.456066 | 7.4:+10627677 | MS.gene061886:CDS |
| TTGACGAAAAGGATTGCATA+TGG | 0.458789 | 7.4:+10627532 | MS.gene061886:CDS |
| GTGGCTTGTTCCACTGCACT+TGG | 0.469029 | 7.4:+10627628 | MS.gene061886:CDS |
| TATAGCCCTCAACCTATAAA+GGG | 0.471608 | 7.4:+10627271 | MS.gene061886:CDS |
| CGGCAACTGTATGGCTGCGC+TGG | 0.476765 | 7.4:+10627459 | MS.gene061886:CDS |
| GAGATTAAATTGCAATATAG+AGG | 0.485208 | 7.4:+10629793 | MS.gene061886:CDS |
| TGAGTTGTCTGAGGCTGAGA+TGG | 0.496938 | 7.4:-10629816 | None:intergenic |
| AGTGGCTACCGGTGCATTTG+TGG | 0.499348 | 7.4:+10627483 | MS.gene061886:CDS |
| ATGTAAGCAAACCGAGGATA+GGG | 0.500818 | 7.4:-10627688 | None:intergenic |
| TATGAGAATTGTTGTGACAT+AGG | 0.502472 | 7.4:-10627317 | None:intergenic |
| TCCTCGGTTTGCTTACATTG+AGG | 0.507319 | 7.4:+10627693 | MS.gene061886:CDS |
| AATGTAAGCAAACCGAGGAT+AGG | 0.523686 | 7.4:-10627689 | None:intergenic |
| TCAGACAACTCAACTGCTGT+TGG | 0.529606 | 7.4:+10629827 | MS.gene061886:CDS |
| ATGTATTCTCAATGTATAGT+TGG | 0.537132 | 7.4:-10629766 | None:intergenic |
| ATAGGGCAGGGGCAGCAACA+TGG | 0.541183 | 7.4:-10627671 | None:intergenic |
| GAGAAGCTTGGCTCCTGTTG+TGG | 0.542438 | 7.4:-10629876 | None:intergenic |
| TATTCTCAATGTATAGTTGG+TGG | 0.542668 | 7.4:-10629763 | None:intergenic |
| TGTGATACTATGGAGAAGCT+TGG | 0.546804 | 7.4:-10629888 | None:intergenic |
| GAGTTGTTTCGAACTCGTCT+TGG | 0.547127 | 7.4:+10627196 | MS.gene061886:CDS |
| ACCAACTATGCTGCATGCTA+AGG | 0.552023 | 7.4:-10627236 | None:intergenic |
| AAGCAAACCGAGGATAGGGC+AGG | 0.561371 | 7.4:-10627684 | None:intergenic |
| GTTATACATGGTGCACAAGA+AGG | 0.578194 | 7.4:+10627583 | MS.gene061886:CDS |
| GTTGTGACATAGGAAATAGA+TGG | 0.579686 | 7.4:-10627307 | None:intergenic |
| ATTCTCATAGTGTTGTCTGA+TGG | 0.580392 | 7.4:+10627331 | MS.gene061886:CDS |
| AACATGCCAACAACCTCTAA+CGG | 0.582906 | 7.4:-10627368 | None:intergenic |
| AGCAAACCGAGGATAGGGCA+GGG | 0.590590 | 7.4:-10627683 | None:intergenic |
| GCAAACCGAGGATAGGGCAG+GGG | 0.590989 | 7.4:-10627682 | None:intergenic |
| CAGCGCCACCACAAATGCAC+CGG | 0.599257 | 7.4:-10627491 | None:intergenic |
| AGCTATAGCTCCAAGTGCAG+TGG | 0.600339 | 7.4:-10627638 | None:intergenic |
| GTTATACGACCCGATAACTT+CGG | 0.617939 | 7.4:+10627439 | MS.gene061886:CDS |
| CCATAGTATCACAACTACAC+TGG | 0.621214 | 7.4:+10629898 | MS.gene061886:CDS |
| TATGTCAGCACAGTTATACA+TGG | 0.621877 | 7.4:+10627571 | MS.gene061886:CDS |
| GGCTACCGGTGCATTTGTGG+TGG | 0.628149 | 7.4:+10627486 | MS.gene061886:CDS |
| GGCTACGCATTCAATTCATG+TGG | 0.631946 | 7.4:+10627609 | MS.gene061886:CDS |
| GCTTGGCTCCTGTTGTGGAG+AGG | 0.637405 | 7.4:-10629871 | None:intergenic |
| ACATGGTGCACAAGAAGGAG+TGG | 0.641976 | 7.4:+10627588 | MS.gene061886:CDS |
| AACAGCAGTTGAGTTGTCTG+AGG | 0.659969 | 7.4:-10629825 | None:intergenic |
| GTGTTGTCTGATGGAACACT+TGG | 0.689623 | 7.4:+10627340 | MS.gene061886:CDS |
| ACCTCAATGTAAGCAAACCG+AGG | 0.693462 | 7.4:-10627694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACACAAAAAAAAAAAAA+AGG | - | chr7.4:10628130-10628149 | None:intergenic | 10.0% |
| !! | TATATTTAAAAACTTAAATC+TGG | + | chr7.4:10628867-10628886 | MS.gene061886:intron | 10.0% |
| !!! | AAATAATACCTTTAAAAAAA+AGG | + | chr7.4:10628537-10628556 | MS.gene061886:intron | 10.0% |
| !!! | AATAATACCTTTAAAAAAAA+GGG | + | chr7.4:10628538-10628557 | MS.gene061886:intron | 10.0% |
| !!! | ATTCATTTTAATGATTAAAT+TGG | - | chr7.4:10628766-10628785 | None:intergenic | 10.0% |
| !!! | TATTTTACAAAAATTAATGA+AGG | - | chr7.4:10628734-10628753 | None:intergenic | 10.0% |
| !! | ATTGAATAAAAATGATCTTA+TGG | - | chr7.4:10628056-10628075 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTTTTTTTGAAC+AGG | - | chr7.4:10627934-10627953 | None:intergenic | 15.0% |
| !!! | ATAATACCTTTAAAAAAAAG+GGG | + | chr7.4:10628539-10628558 | MS.gene061886:intron | 15.0% |
| !!! | TAGATTTAATTTGAGAAAAT+AGG | + | chr7.4:10629377-10629396 | MS.gene061886:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGTTGAAG+TGG | + | chr7.4:10627781-10627800 | MS.gene061886:intron | 15.0% |
| !! | AATTTAATGTAACCCTTTAT+AGG | - | chr7.4:10627286-10627305 | None:intergenic | 20.0% |
| !! | CAATGCCTAATATAATAATT+TGG | - | chr7.4:10629223-10629242 | None:intergenic | 20.0% |
| !! | CATCCAATAATGTATTATTA+CGG | + | chr7.4:10629611-10629630 | MS.gene061886:intron | 20.0% |
| !! | TAACATTGCATGTAAATTAA+AGG | - | chr7.4:10629569-10629588 | None:intergenic | 20.0% |
| !! | TGTAAATTAAAGGAGTTTAA+TGG | - | chr7.4:10629559-10629578 | None:intergenic | 20.0% |
| !! | TTAAAATGAGAAGCTATTTA+CGG | + | chr7.4:10628022-10628041 | MS.gene061886:intron | 20.0% |
| !!! | AAAAACTTAAATCTGGAATT+TGG | + | chr7.4:10628874-10628893 | MS.gene061886:intron | 20.0% |
| !!! | AAAATCTTTGTTTTTTTGAC+TGG | + | chr7.4:10629160-10629179 | MS.gene061886:intron | 20.0% |
| !!! | AATCACAATTTAGAATAAAC+AGG | + | chr7.4:10627826-10627845 | MS.gene061886:intron | 20.0% |
| !!! | ATTATTGCTATTGTTATGAT+CGG | + | chr7.4:10628406-10628425 | MS.gene061886:intron | 20.0% |
| !!! | TAATACCTTTAAAAAAAAGG+GGG | + | chr7.4:10628540-10628559 | MS.gene061886:intron | 20.0% |
| !!! | TTAGTTGGATTGTTTTTAAT+CGG | - | chr7.4:10629082-10629101 | None:intergenic | 20.0% |
| ! | AACTTCTGTAATACTATATG+TGG | - | chr7.4:10629298-10629317 | None:intergenic | 25.0% |
| ! | AATTATGTCAATTCAAACGT+TGG | - | chr7.4:10628826-10628845 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAACCTGAA+TGG | - | chr7.4:10627404-10627423 | None:intergenic | 25.0% |
| ! | AGAAACAAATTGACATTAGT+TGG | - | chr7.4:10629097-10629116 | None:intergenic | 25.0% |
| ! | AGGGGGAATAATAATATATT+TGG | + | chr7.4:10628557-10628576 | MS.gene061886:intron | 25.0% |
| ! | ATGCCGTAATAATACATTAT+TGG | - | chr7.4:10629617-10629636 | None:intergenic | 25.0% |
| ! | ATGTATTCTCAATGTATAGT+TGG | - | chr7.4:10629769-10629788 | None:intergenic | 25.0% |
| ! | CGCAACCAAATTATTATATT+AGG | + | chr7.4:10629215-10629234 | MS.gene061886:intron | 25.0% |
| ! | GAATTATTATGCTAAGTGAT+GGG | - | chr7.4:10629032-10629051 | None:intergenic | 25.0% |
| ! | GAGATTAAATTGCAATATAG+AGG | + | chr7.4:10629793-10629812 | MS.gene061886:CDS | 25.0% |
| ! | TCAATCATAAAGATGTTGAT+TGG | - | chr7.4:10628622-10628641 | None:intergenic | 25.0% |
| ! | TTACTTGCATCAAATTATAC+AGG | - | chr7.4:10629138-10629157 | None:intergenic | 25.0% |
| ! | TTTATGACACTTTCAAAATG+TGG | + | chr7.4:10628514-10628533 | MS.gene061886:intron | 25.0% |
| !! | AAAGTGTGCTTTTAATATCT+TGG | - | chr7.4:10629712-10629731 | None:intergenic | 25.0% |
| !!! | TTATTCCCCCTTTTTTTTAA+AGG | - | chr7.4:10628548-10628567 | None:intergenic | 25.0% |
| CAACAACAATTGCAAAAACA+AGG | + | chr7.4:10627170-10627189 | MS.gene061886:CDS | 30.0% | |
| CGAATTATTATGCTAAGTGA+TGG | - | chr7.4:10629033-10629052 | None:intergenic | 30.0% | |
| GAAGCAAATTAAGTGATCTT+AGG | + | chr7.4:10627880-10627899 | MS.gene061886:intron | 30.0% | |
| GTCTTGTGAAAATGCTTTAT+TGG | - | chr7.4:10628933-10628952 | None:intergenic | 30.0% | |
| TAATATAGTTCCAAAACTCC+AGG | + | chr7.4:10628582-10628601 | MS.gene061886:intron | 30.0% | |
| TATGAGAATTGTTGTGACAT+AGG | - | chr7.4:10627320-10627339 | None:intergenic | 30.0% | |
| TATTCTCAATGTATAGTTGG+TGG | - | chr7.4:10629766-10629785 | None:intergenic | 30.0% | |
| TGCAAATATACACAAACACT+TGG | - | chr7.4:10628982-10629001 | None:intergenic | 30.0% | |
| ! | ACTTAAATCTGGAATTTGGA+TGG | + | chr7.4:10628878-10628897 | MS.gene061886:intron | 30.0% |
| ! | GACTATCAGTTATTTCGATT+GGG | - | chr7.4:10628360-10628379 | None:intergenic | 30.0% |
| ! | TGACTATCAGTTATTTCGAT+TGG | - | chr7.4:10628361-10628380 | None:intergenic | 30.0% |
| ! | TTTTTGTTGAAGTGGATACA+TGG | + | chr7.4:10627789-10627808 | MS.gene061886:intron | 30.0% |
| ATATAGCCCTCAACCTATAA+AGG | + | chr7.4:10627270-10627289 | MS.gene061886:CDS | 35.0% | |
| ATGTAACCCTTTATAGGTTG+AGG | - | chr7.4:10627280-10627299 | None:intergenic | 35.0% | |
| ATTCTCATAGTGTTGTCTGA+TGG | + | chr7.4:10627331-10627350 | MS.gene061886:CDS | 35.0% | |
| GTTGTGACATAGGAAATAGA+TGG | - | chr7.4:10627310-10627329 | None:intergenic | 35.0% | |
| TATAGCCCTCAACCTATAAA+GGG | + | chr7.4:10627271-10627290 | MS.gene061886:CDS | 35.0% | |
| TATGTCAGCACAGTTATACA+TGG | + | chr7.4:10627571-10627590 | MS.gene061886:CDS | 35.0% | |
| TGCATGAAGAGAAAGACATT+TGG | + | chr7.4:10628998-10629017 | MS.gene061886:intron | 35.0% | |
| TTGACGAAAAGGATTGCATA+TGG | + | chr7.4:10627532-10627551 | MS.gene061886:CDS | 35.0% | |
| ! | AGGTTGTTGGCATGTTTTAT+TGG | + | chr7.4:10627375-10627394 | MS.gene061886:CDS | 35.0% |
| ! | TATAGGTTGAGGGCTATATA+GGG | - | chr7.4:10627269-10627288 | None:intergenic | 35.0% |
| ! | TCAGTTATTTCGATTGGGTA+TGG | - | chr7.4:10628355-10628374 | None:intergenic | 35.0% |
| ! | TGTAACCCTTTATAGGTTGA+GGG | - | chr7.4:10627279-10627298 | None:intergenic | 35.0% |
| ! | TTATAGGTTGAGGGCTATAT+AGG | - | chr7.4:10627270-10627289 | None:intergenic | 35.0% |
| !! | TGTTTTATTGGCAACCATTC+AGG | + | chr7.4:10627387-10627406 | MS.gene061886:CDS | 35.0% |
| !!! | TTGCACATTGTCTTGTTTTC+AGG | + | chr7.4:10629730-10629749 | MS.gene061886:intron | 35.0% |
| AAAACTCCAGGAATCGATTG+GGG | + | chr7.4:10628594-10628613 | MS.gene061886:intron | 40.0% | |
| AACATGCCAACAACCTCTAA+CGG | - | chr7.4:10627371-10627390 | None:intergenic | 40.0% | |
| AATGTAAGCAAACCGAGGAT+AGG | - | chr7.4:10627692-10627711 | None:intergenic | 40.0% | |
| ACAAACACTTGGAGACAGAT+TGG | - | chr7.4:10628971-10628990 | None:intergenic | 40.0% | |
| ACGTCATATCATTGAAGTGG+GGG | - | chr7.4:10629452-10629471 | None:intergenic | 40.0% | |
| ATACAGTTGCCGAAGTTATC+GGG | - | chr7.4:10627451-10627470 | None:intergenic | 40.0% | |
| ATGTAAGCAAACCGAGGATA+GGG | - | chr7.4:10627691-10627710 | None:intergenic | 40.0% | |
| CAAAACTCCAGGAATCGATT+GGG | + | chr7.4:10628593-10628612 | MS.gene061886:intron | 40.0% | |
| CACGTCATATCATTGAAGTG+GGG | - | chr7.4:10629453-10629472 | None:intergenic | 40.0% | |
| CATACAGTTGCCGAAGTTAT+CGG | - | chr7.4:10627452-10627471 | None:intergenic | 40.0% | |
| CCACGTCATATCATTGAAGT+GGG | - | chr7.4:10629454-10629473 | None:intergenic | 40.0% | |
| GCTCATAGTTACCAACATGT+AGG | - | chr7.4:10628333-10628352 | None:intergenic | 40.0% | |
| GTCACTATGCATTTGTCACT+TGG | + | chr7.4:10628687-10628706 | MS.gene061886:intron | 40.0% | |
| GTTACGCAGACATATGAGTT+TGG | - | chr7.4:10628911-10628930 | None:intergenic | 40.0% | |
| GTTATACATGGTGCACAAGA+AGG | + | chr7.4:10627583-10627602 | MS.gene061886:CDS | 40.0% | |
| GTTATACGACCCGATAACTT+CGG | + | chr7.4:10627439-10627458 | MS.gene061886:CDS | 40.0% | |
| TCCACGTCATATCATTGAAG+TGG | - | chr7.4:10629455-10629474 | None:intergenic | 40.0% | |
| TGTGATACTATGGAGAAGCT+TGG | - | chr7.4:10629891-10629910 | None:intergenic | 40.0% | |
| TTGTTGAAGTGGATACATGG+AGG | + | chr7.4:10627792-10627811 | MS.gene061886:intron | 40.0% | |
| !! | GTCAACAAGTGTGTCGATTT+GGG | - | chr7.4:10627517-10627536 | None:intergenic | 40.0% |
| !!! | CATTGTCTTGTTTTCAGGCA+AGG | + | chr7.4:10629735-10629754 | MS.gene061886:intron | 40.0% |
| AAACGACTCTGCCTACATGT+TGG | + | chr7.4:10628319-10628338 | MS.gene061886:intron | 45.0% | |
| ACCAACTATGCTGCATGCTA+AGG | - | chr7.4:10627239-10627258 | None:intergenic | 45.0% | |
| ACCTCAATGTAAGCAAACCG+AGG | - | chr7.4:10627697-10627716 | None:intergenic | 45.0% | |
| ACCTTAGCATGCAGCATAGT+TGG | + | chr7.4:10627235-10627254 | MS.gene061886:CDS | 45.0% | |
| CCAAAACTCCAGGAATCGAT+TGG | + | chr7.4:10628592-10628611 | MS.gene061886:intron | 45.0% | |
| CCCACTTCAATGATATGACG+TGG | + | chr7.4:10629451-10629470 | MS.gene061886:intron | 45.0% | |
| CGATAACTTCGGCAACTGTA+TGG | + | chr7.4:10627450-10627469 | MS.gene061886:CDS | 45.0% | |
| CGTCATATCATTGAAGTGGG+GGG | - | chr7.4:10629451-10629470 | None:intergenic | 45.0% | |
| GCAGACATATGAGTTTGGAC+TGG | - | chr7.4:10628906-10628925 | None:intergenic | 45.0% | |
| GGCTACGCATTCAATTCATG+TGG | + | chr7.4:10627609-10627628 | MS.gene061886:CDS | 45.0% | |
| GTGTTGTCTGATGGAACACT+TGG | + | chr7.4:10627340-10627359 | MS.gene061886:CDS | 45.0% | |
| TCAGACAACTCAACTGCTGT+TGG | + | chr7.4:10629827-10629846 | MS.gene061886:CDS | 45.0% | |
| TGGAGCTATAGCTTCTGTTC+TGG | + | chr7.4:10627648-10627667 | MS.gene061886:CDS | 45.0% | |
| ! | AACAGCAGTTGAGTTGTCTG+AGG | - | chr7.4:10629828-10629847 | None:intergenic | 45.0% |
| ! | CGACACACTTGTTGACGAAA+AGG | + | chr7.4:10627521-10627540 | MS.gene061886:CDS | 45.0% |
| ! | GAGTTGTTTCGAACTCGTCT+TGG | + | chr7.4:10627196-10627215 | MS.gene061886:CDS | 45.0% |
| ! | TCCTCGGTTTGCTTACATTG+AGG | + | chr7.4:10627693-10627712 | MS.gene061886:CDS | 45.0% |
| !! | CCAATCGATTCCTGGAGTTT+TGG | - | chr7.4:10628595-10628614 | None:intergenic | 45.0% |
| !! | CGTCAACAAGTGTGTCGATT+TGG | - | chr7.4:10627518-10627537 | None:intergenic | 45.0% |
| ACATGGTGCACAAGAAGGAG+TGG | + | chr7.4:10627588-10627607 | MS.gene061886:CDS | 50.0% | |
| AGCTATAGCTCCAAGTGCAG+TGG | - | chr7.4:10627641-10627660 | None:intergenic | 50.0% | |
| ! | TGAGTTGTCTGAGGCTGAGA+TGG | - | chr7.4:10629819-10629838 | None:intergenic | 50.0% |
| ! | TTGGATCCCCAATCGATTCC+TGG | - | chr7.4:10628603-10628622 | None:intergenic | 50.0% |
| !! | TCCTGTTGTGGAGAGGTACT+TGG | - | chr7.4:10629867-10629886 | None:intergenic | 50.0% |
| AAGCAAACCGAGGATAGGGC+AGG | - | chr7.4:10627687-10627706 | None:intergenic | 55.0% | |
| AGCAAACCGAGGATAGGGCA+GGG | - | chr7.4:10627686-10627705 | None:intergenic | 55.0% | |
| AGTGGCTACCGGTGCATTTG+TGG | + | chr7.4:10627483-10627502 | MS.gene061886:CDS | 55.0% | |
| CATTGAAGTGGGGGGTAGTG+AGG | - | chr7.4:10629443-10629462 | None:intergenic | 55.0% | |
| GAGAAGCTTGGCTCCTGTTG+TGG | - | chr7.4:10629879-10629898 | None:intergenic | 55.0% | |
| GCCAAGTACCTCTCCACAAC+AGG | + | chr7.4:10629863-10629882 | MS.gene061886:CDS | 55.0% | |
| GTGACGCCGTTAGAGGTTGT+TGG | + | chr7.4:10627362-10627381 | MS.gene061886:CDS | 55.0% | |
| !! | ACACTTGGTGACGCCGTTAG+AGG | + | chr7.4:10627355-10627374 | MS.gene061886:CDS | 55.0% |
| !! | GTGGCTTGTTCCACTGCACT+TGG | + | chr7.4:10627628-10627647 | MS.gene061886:CDS | 55.0% |
| ATAGGGCAGGGGCAGCAACA+TGG | - | chr7.4:10627674-10627693 | None:intergenic | 60.0% | |
| CAGCGCCACCACAAATGCAC+CGG | - | chr7.4:10627494-10627513 | None:intergenic | 60.0% | |
| GCAAACCGAGGATAGGGCAG+GGG | - | chr7.4:10627685-10627704 | None:intergenic | 60.0% | |
| GCTTGGCTCCTGTTGTGGAG+AGG | - | chr7.4:10629874-10629893 | None:intergenic | 60.0% | |
| GGCTACCGGTGCATTTGTGG+TGG | + | chr7.4:10627486-10627505 | MS.gene061886:CDS | 60.0% | |
| CGGCAACTGTATGGCTGCGC+TGG | + | chr7.4:10627459-10627478 | MS.gene061886:CDS | 65.0% | |
| TGCTGCCCCTGCCCTATCCT+CGG | + | chr7.4:10627677-10627696 | MS.gene061886:CDS | 65.0% | |
| ! | CTGTATGGCTGCGCTGGCAG+TGG | + | chr7.4:10627465-10627484 | MS.gene061886:CDS | 65.0% |
| ! | GCTGCGCTGGCAGTGGCTAC+CGG | + | chr7.4:10627472-10627491 | MS.gene061886:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 10627160 | 10629919 | 10627160 | ID=MS.gene061886 |
| chr7.4 | mRNA | 10627160 | 10629919 | 10627160 | ID=MS.gene061886.t1;Parent=MS.gene061886 |
| chr7.4 | exon | 10627160 | 10627714 | 10627160 | ID=MS.gene061886.t1.exon1;Parent=MS.gene061886.t1 |
| chr7.4 | CDS | 10627160 | 10627714 | 10627160 | ID=cds.MS.gene061886.t1;Parent=MS.gene061886.t1 |
| chr7.4 | exon | 10629752 | 10629919 | 10629752 | ID=MS.gene061886.t1.exon2;Parent=MS.gene061886.t1 |
| chr7.4 | CDS | 10629752 | 10629919 | 10629752 | ID=cds.MS.gene061886.t1;Parent=MS.gene061886.t1 |
| Gene Sequence |
| Protein sequence |
