AlfalfaGEDB | MS.gene068771

M. sativa cultivar XinJiangDaYe / MS.gene068771

KEGG: K03671
GO: GO:0003674 GO:0003824 GO:0006662 GO:0008150 GO:0008152 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0018904 GO:0019725 GO:0042592 GO:0044281 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704
PFAM: PF00085.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068771.t1	XP_013464712.1	93.1	173	11	1	1	172	1	173	1.10E-83	319.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068771.t1	Q9SEU6	59.8	164	61	3	14	172	28	191	8.8e-50	198.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068771.t1	I3SA84	93.1	173	11	1	1	172	1	173	7.8e-84	319.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene068771	0.848044	7.88E-60	-1.69E-46
MS.gene049222	MS.gene068771	0.81894	1.51E-52	-1.69E-46
MS.gene049232	MS.gene068771	0.843984	1.00E-58	-1.69E-46
MS.gene049285	MS.gene068771	0.848424	6.19E-60	-1.69E-46
MS.gene049320	MS.gene068771	0.842489	2.51E-58	-1.69E-46
MS.gene049600	MS.gene068771	0.804483	2.11E-49	-1.69E-46
MS.gene049609	MS.gene068771	0.809961	1.46E-50	-1.69E-46
MS.gene049633	MS.gene068771	0.81292	3.33E-51	-1.69E-46
MS.gene049657	MS.gene068771	0.82309	1.67E-53	-1.69E-46
MS.gene049865	MS.gene068771	0.847186	1.36E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068771.t1	MTR_2g079420	93.064	173	11	1	1	172	1	173	1.34e-115	325
MS.gene068771.t1	MTR_8g059015	65.385	182	47	6	1	172	1	176	2.86e-75	223
MS.gene068771.t1	MTR_3g089065	65.600	125	42	1	48	172	50	173	6.50e-61	186
MS.gene068771.t1	MTR_4g085880	53.125	96	45	0	77	172	73	168	3.38e-37	126
MS.gene068771.t1	MTR_2g079340	50.495	101	50	0	72	172	39	139	8.19e-34	117
MS.gene068771.t1	MTR_2g079400	48.039	102	53	0	69	170	34	135	6.86e-33	114
MS.gene068771.t1	MTR_2g079360	52.941	102	47	1	69	169	46	147	7.72e-32	112
MS.gene068771.t1	MTR_2g079380	53.571	84	39	0	69	152	18	101	1.79e-25	98.6
MS.gene068771.t1	MTR_1g114290	38.532	109	59	2	69	172	70	175	5.14e-23	90.5
MS.gene068771.t1	MTR_1g098660	33.981	103	68	0	67	169	60	162	4.27e-20	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068771.t1	AT3G15360	60.510	157	58	2	20	172	35	191	1.50e-64	196
MS.gene068771.t1	AT1G03680	53.548	155	68	3	18	172	29	179	9.60e-56	174
MS.gene068771.t1	AT4G03520	52.229	157	67	4	20	172	33	185	3.37e-55	172
MS.gene068771.t1	AT2G15570	50.450	111	52	1	62	172	64	171	2.08e-37	127
MS.gene068771.t1	AT2G15570	49.550	111	54	1	62	172	64	172	3.16e-37	126
MS.gene068771.t1	AT4G03520	63.380	71	26	0	102	172	1	71	1.54e-29	103
MS.gene068771.t1	AT1G76760	36.792	106	67	0	67	172	63	168	3.86e-23	90.5
MS.gene068771.t1	AT1G43560	32.927	164	94	3	14	172	11	163	2.23e-22	88.6
MS.gene068771.t1	AT1G50320	33.577	137	76	2	38	172	53	176	3.50e-21	85.9
MS.gene068771.t1	AT1G19730	42.105	76	44	0	83	158	26	101	4.17e-18	75.9

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Find 54 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCTTCAGTTGCTACT+CGG	0.607500	2.3:-18320270	MS.gene068771:CDS
AACCGAACCCTAACCTTCAA+CGG	0.535342	2.3:+18324012	None:intergenic
AATCTCAGATTCTATGACAA+GGG	0.589830	2.3:+18320414	None:intergenic
ACCGCGACGAACAACATTCG+AGG	0.568696	2.3:+18324069	None:intergenic
AGAATCTGAGATTCCTGTGT+TGG	0.562341	2.3:-18320404	MS.gene068771:CDS
AGCTTGAGGCCGGTGTATTG+AGG	0.508457	2.3:+18324130	None:intergenic
ATCACGAGCCTCACACACGA+CGG	0.693040	2.3:+18324042	None:intergenic
ATGCGGCAGGGACCACACCA+TGG	0.592003	2.3:+18320367	None:intergenic
ATGGGATGAATCATGCGGCA+GGG	0.655515	2.3:+18320355	None:intergenic
ATTTGTGGTCAATGTTGCTT+TGG	0.336888	2.3:+18320171	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTGCATAACATGCTT+AGG	+	chr2.3:18321576-18321595	None:intergenic	30.0%
AAAATAACAGACCCATTAAG+TGG	+	chr2.3:18321613-18321632	None:intergenic	30.0%
AACATTGACATTAACTGACA+GGG	-	chr2.3:18320691-18320710	MS.gene068771:intron	30.0%
AAGCTTCAAAATCATCTCAA+TGG	-	chr2.3:18322562-18322581	MS.gene068771:intron	30.0%
AATCTCAGATTCTATGACAA+GGG	+	chr2.3:18323950-18323969	None:intergenic	30.0%
AGTCTACATTGCACTAAAAA+GGG	-	chr2.3:18321002-18321021	MS.gene068771:intron	30.0%
ATATGTGAATTGCATAGGTA+AGG	-	chr2.3:18322715-18322734	MS.gene068771:intron	30.0%
ATTGAACATCATCACACATA+AGG	-	chr2.3:18321490-18321509	MS.gene068771:intron	30.0%
ATTGTAATCTGCAGAACTAA+TGG	-	chr2.3:18322641-18322660	MS.gene068771:intron	30.0%
CAAACAATTCATGTTGAAGA+AGG	-	chr2.3:18322592-18322611	MS.gene068771:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	18320153	18324230	18320153	ID=MS.gene068771
chr2.3	mRNA	18320153	18324230	18320153	ID=MS.gene068771.t1;Parent=MS.gene068771
chr2.3	exon	18324026	18324230	18324026	ID=MS.gene068771.t1.exon1;Parent=MS.gene068771.t1
chr2.3	CDS	18324026	18324230	18324026	ID=cds.MS.gene068771.t1;Parent=MS.gene068771.t1
chr2.3	exon	18320153	18320466	18320153	ID=MS.gene068771.t1.exon2;Parent=MS.gene068771.t1
chr2.3	CDS	18320153	18320466	18320153	ID=cds.MS.gene068771.t1;Parent=MS.gene068771.t1

Gene Sequence

>MS.gene068771

ATGGCCACCGTACAACTCGAATCCTTCTCCCTTATTCGCTCTCCAATCGTCGCTTCTCGCCGGAGCACTGCCGCGTTTCCTCAATACACCGGCCTCAAGCTCCGACCAGTCTCCGCCACTCGTCTGCGGAGTCAACCCGCCTCGAATGTTGTTCGTCGCGGTGGAACCGTCGTGTGTGAGGCTCGTGATAACACAGCCGTTGAAGGTTAGGGTTCGGTTAATCTTAACTTAAAATTGATGTTGAAATTTTGTTGTTTTAGATCTGTTGAAAGTGATTGGTTTATGTGATCCTATGTGACTGTGAGTAAGAATTTTCATACCAATGACAAATTAGTTCCTCCGTTAGTTTTGTAAGTCACCTAGATTTTTTTCCCCCAGTTGCTAGAGTTTTAAAAGCTGAAATTTAGTGTACGTATTGGAACCCCTTTCCGGACCCTACGTATGCGGGTGCAATAAAGCTCCGGGCTGCCCTTTTTAGTGTATCATTCTTTTAGTTAATTTGTTAGCAAACAAACATTCAGAATGAGGCTAGAAATACAACATTGACATTAACTGACAGGGGGAATTCCCAGCTAAGGTGAAATGGCCCCAGGCCCATAATCCGAAACACATGAAACATACGCATGCTCAACTATATTGCTTTACCACCTACATATCAAATCCCACCACTTTCTCCCCCTTGAAACTAAATCTCCCCTCACCCCCTTTCTATTTCCCTCCTAGGATGAGACTAGAGTAGCAGGGCACGGGTGTTGTGTCTTCAATTGTAGACATTGAAAGGCCTCTCAATTATAGGTGTCGAGGAAACACCAAGATTGGGTTCCTTATTCCTATCATGGAGCCTCATGGAGTCTACATTGCACTAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAACCTTACCCTGTTTTACATAAGAGGCTGTTTCCAGGAGGAGTCTACATTGCACTATATATATATATATCACGTGGACCAATGCCTTTCACGAGGTGTTGTCACCGTCAGGTGAATTTGTACCCACATGCTAATTTTTTACCCACGTGGCCACTGCATGACTTCAACAATGTTTTTCTTTAAGAGCCATACAAACTGGCAACTTACGCGACATGCCAAATACATTCCTAACTAGTTAATAGTTTCAAACATGCCATGTTCCAAATAAATATTTATTGAAATTAAGCCATTTTGGTCAGTGTCACCAAGACACTTCTGGGTGGGTTCACAATATTTGGCCTAATATTCATAATGTTAGGTTGAGCTCCCAATATTTGGTTTGGGGCTTTAGCTCATTGAACATCATCACACATAAGGTGAAGTTGTTAACCATGGGCAAATAGAAAAAATGGAATGCATATAGACTAAGATTAGATACCTAAGCATGTTATGCAGTTTTTGGTTTCACTAAATGCCACTTAATGGGTCTGTTATTTTTGTAGTTGCTTACTCTAATAGTTATGGACAGAGGCTTTCTTGGACCAAAATTCGAGCGATTCTAGTTTTATATCTCTTATAATTATTTTTTTTTTTTTGCTCTCCTTTGCAGCCTTCTGTAGTATCTTAGCATGAAACTTTATAGATTCCAATTCACATGCTCTTGAATGGATGACTACTTTCCCTTGAATAACTGACATATATGATGATTCATCTCATTTACTTTTTATTGTAAAATCGACCTAGTTGATTAGATGAGTTATACGACAGGATAGTGAAGAAGTTTGTGTTGAGTCTAATTACATGGTAAGAAGTTTGTGTCAAAATTGATGAAATAGAACTTCCTTTAATAAAGATGGTCCCACGCCCATTGATTGAGAGAATCAGAGAAGCTGTTTATGAGTATTAGTGTTGGAATTAAAGGATAAATTGAATGTCGAGCGGTCCAATACCATCTTCAGAGGGGAGCTCCTTGTCTTCTCGGGAAGGGTAGATTTTAGCTACTACCTTATTAATTTAGGCCTTCGTGTTATAGAAGTAAGGGTCATGTTAACTTGTGCCCTTAGGGCACAAGTTAAGAAACTAAAAATAGAATTAAAAGAGATGTTTCTATGTTTAGCTTCTAAACTTGTACCCCAAGGGCACAAGCAAGGTAGACAAACTCGAGATCCTAAGTAGGATCGGATAACACCAATGAGATCGTGAATCGGGGGATCGTAACACGGATCGTAAGATCCTACCAAATTTAGAAATTCATATATATTGCATATAAATTCATACATATTCATATGAAGCAACATAATTTAATAGAAAAATAACTTTAAATAACCTCAAATTCATTAGCAAGAGCACATTAAAACAACTTAAAACAGCTCTAAAATTCAAAACAGTAGCACTGCAGACCAGAACAGAAAAAAAAAACACTTAAAAAGCTTCAAAATCATCTCAATGGTCATTTCCAAACAATTCATGTTGAAGAAGGTCATAGTCACATTAAAAGAAGGAAGGATTGTAATCTGCAGAACTAATGGGTAGAAGGCTGAATAAATAATTAACGTGAGAGAGGGAATTGAGTGCTACGAATATGTGAATTGCATAGGTAAGGTTCCATGATTTATGGGTGTATTGGAAAATTTCCCTAATTATTGATAGTGGCTTTATTGGGAAGATTTTTAGTAATCAATTGGTTTAATGACAGAATTTGAAACCGTTTCAGAGAATAAGAAGAATGAATCACATTTTTTTTGCCTTTAATTTCGGAAAAACCGTTTCGAATCAATCCGGGTCACGAACCCGACCCGAAAACCCGAAATTTGGTTAGCAAAACATAAACCGGGTCACGAACCGACCCGCGAACCCGGATTTCTGGGTAACAAATCTGAATCGCTGGAAACGTGCGATACAACCGATTCTGCGTTTTTCAACGACGATCCAAGCCGCGACAACAAATTTCCGATTCCGACGACTTTCCGGCACGGCAAGGGGAGGTGAGATCACAAACTCGGACGATCCTACGAGTTGGATCGCGAGTTTGTCTATTTTGGGCACAAGATATCATTTCCCTAGAAGTAATTATGGTGTTAGTTTCACAATCATTTTGAGAATAGTAACGATAAATTATGAGAACTCTTAATAATCTAGATCAATTTATTAGATTTTGAAGCATTCAGGATTGATGTGCTGGTGGAGTACTAATACTAGTATTTGTTGGTAACTTGGTATGAATCGTATGATGTGATTGCTGTTACTTTTCACAATCCTTTGACCAATATCTTACTTTGTATTTGTGTGCGTTGTTTCAATAAGCATGCTAAAATGGTATAGCTTTTGGTGATTCCCAGCCGAAGAAACAAGAACCAGAACTCTGATTTTATTTTTATTTTAATAAAAAAATAAAAAAAGTTCATTTTTATAATCCAACTTGAACATATATTTTTAGTAGTATTTTGTATTTTAGAGAGTCTGCCTTGATTCAACCATTGTGACCTTGAGGTCACAGATTCAAATATTGGAAACAACCTCTCTGCTTGTATGCTTAAGACTGTGCATCTACCTTACTCAGACTGCAACTGATGGGAGCTTGGCTCACTGAGCTGCCATTTATGTTTTTCAATTTTTTGATGCATTTATCATCTGGTTTGCATGTTTTGCAGTTCAGGATTTTGCATCACTGTAAATGTGTAATTTGTGATCAAAGTTCTACCTATCTTCTGATTTGTTTTCAGAGACTTGTATGAGTGAAATTTTTAGTGTAGTTAAACTTATGTTTTATTGGATATTGCAGTGGCTTCTATTACTGATGGAAATTGGCAATCCCTTGTCATAGAATCTGAGATTCCTGTGTTGGTCGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGCATGATTCATCCCATAGTTGATGAGCTAGCAAAGGAATATGCGGGTAAGCTCAAGTGTTACAAACTCAATACTGATGAAAGTCCTTCAGTTGCTACTCGGTATGGGATTCGAAGTATTCCAACTGTCATTTTCTTCAAGAACGGTGAAAAGAAAGATACAGTTATTGGTGCTGTGCCCAAAGCAACATTGACCACAAATATAGAAAAATTCCTGTGA

Protein sequence

>MS.gene068771.t1

MATVQLESFSLIRSPIVASRRSTAAFPQYTGLKLRPVSATRLRSQPASNVVRRGGTVVCEARDNTAVEVASITDGNWQSLVIESEIPVLVEFWAPWCGPCRMIHPIVDELAKEYAGKLKCYKLNTDESPSVATRYGIRSIPTVIFFKNGEKKDTVIGAVPKATLTTNIEKFL