AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21926


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGAAGCATCCATCTTTC+TGG 0.194721 5.1:+2673632 MS.gene21926:CDS
AGCTTCTCCTTCAGCCTCTT+TGG 0.225392 5.1:-2676129 None:intergenic
TTTCTTCAGGGATGAGGGTT+GGG 0.234866 5.1:+2676756 MS.gene21926:intron
AGCATTCTTCAGTGCGCTTC+TGG 0.249781 5.1:+2673500 MS.gene21926:CDS
ACTTACAATTCCACCATCTA+TGG 0.251042 5.1:+2676790 MS.gene21926:CDS
CAGCTTCCAGTTGTCATTAG+AGG 0.251117 5.1:+2674882 MS.gene21926:CDS
TCTGAATTTGATAGTGAAAA+TGG 0.258524 5.1:+2673887 MS.gene21926:CDS
CATACCAAGTCGAAACTTAA+AGG 0.287309 5.1:-2676524 None:intergenic
GACGACAATCAGCCTGAAAA+TGG 0.313986 5.1:+2674786 MS.gene21926:CDS
TTGGGAGAGGACGTGGGAAC+TGG 0.337787 5.1:+2673851 MS.gene21926:CDS
AAAATATTTGACTCGTGTAT+TGG 0.338581 5.1:+2676493 MS.gene21926:CDS
GGATAGGTTCTCACGTTAGA+TGG 0.341955 5.1:-2676239 None:intergenic
GGTTATAGAGGACATATCTA+TGG 0.345544 5.1:+2676271 MS.gene21926:CDS
AGCAAAGCAATCGAAGAAAA+AGG 0.355166 5.1:+2674818 MS.gene21926:CDS
AACCAGAAAGATGGATGCTT+CGG 0.367662 5.1:-2673634 None:intergenic
TCTCTCGTGTCGTCGTCATC+TGG 0.377480 5.1:-2673665 None:intergenic
ACAATGCAAAAGTGATTCAT+TGG 0.381195 5.1:+2673832 MS.gene21926:intron
GGATGACTTGGTGGCATTCT+CGG 0.384813 5.1:+2673601 MS.gene21926:CDS
GGAGTATACCACAAAATTCA+TGG 0.385779 5.1:+2676976 MS.gene21926:CDS
TGCCCTTTGAATCTTAAGTT+TGG 0.390870 5.1:+2673575 MS.gene21926:CDS
GCTTTGTCTGAAGTGGAAAT+CGG 0.394739 5.1:-2674948 None:intergenic
ACAATTTCATACCCCATAGA+TGG 0.396140 5.1:-2676803 None:intergenic
GTTGAGTTGGTTGGCGTTGA+AGG 0.403304 5.1:+2677011 MS.gene21926:CDS
GGGTGGGATGTTGGCGTCAA+TGG 0.405209 5.1:+2676648 MS.gene21926:CDS
GGGCACGTCTCAACCTTGTT+TGG 0.412493 5.1:-2673557 None:intergenic
TCCTCTATAACCAATCCATT+TGG 0.417967 5.1:-2676260 None:intergenic
TTGCATGAGAGACATTGTTC+TGG 0.419904 5.1:-2675922 None:intergenic
TGAAAACCCTTACTCATCAT+TGG 0.420043 5.1:-2675969 None:intergenic
TCCACATCGTCAGTACTATA+CGG 0.427484 5.1:-2672364 None:intergenic
TTGTCACCTCTAATGACAAC+TGG 0.439166 5.1:-2674888 None:intergenic
AGATTTAGCTTTGTCTGAAG+TGG 0.441957 5.1:-2674955 None:intergenic
TTCTTCAGGGATGAGGGTTG+GGG 0.443024 5.1:+2676757 MS.gene21926:intron
GGTTCTCACGTTAGATGGCT+TGG 0.444994 5.1:-2676234 None:intergenic
CATGCAAAGGATGGAGATGA+TGG 0.445035 5.1:+2675938 MS.gene21926:CDS
TGATTCATTGGGAGAGGACG+TGG 0.450717 5.1:+2673844 MS.gene21926:CDS
GATGGCAAAAGAGCTGATCT+TGG 0.455967 5.1:+2676302 MS.gene21926:CDS
CAGGTCAGTGTTAGATATAC+CGG 0.457744 5.1:+2676451 MS.gene21926:intron
ATACCAAGTCGAAACTTAAA+GGG 0.462033 5.1:-2676523 None:intergenic
TCCAAATGGATTGGTTATAG+AGG 0.465197 5.1:+2676259 MS.gene21926:CDS
ACCAGAAAGATGGATGCTTC+GGG 0.470599 5.1:-2673633 None:intergenic
CTAAAATTTCAGGCTACTCT+AGG 0.474162 5.1:+2673455 MS.gene21926:intron
AGGTGACAATAAGTTTGTCT+TGG 0.479792 5.1:+2674902 MS.gene21926:CDS
ATATTTGATGTTGAGTTGGT+TGG 0.480042 5.1:+2677002 MS.gene21926:CDS
CTATACGGAACCGGATTGCC+AGG 0.485280 5.1:-2672349 None:intergenic
GCACAAAATAACCAGAAAGA+TGG 0.487484 5.1:-2673643 None:intergenic
CTTACAATTCCACCATCTAT+GGG 0.490011 5.1:+2676791 MS.gene21926:CDS
GTCATCAAGGGGTGGGATGT+TGG 0.490964 5.1:+2676639 MS.gene21926:CDS
GCTTATATTTGATGTTGAGT+TGG 0.494265 5.1:+2676998 MS.gene21926:CDS
AACGTGAGAACCTATCCAAA+TGG 0.495137 5.1:+2676245 MS.gene21926:CDS
AAGAGCTGATCTTGGAAAGA+AGG 0.496054 5.1:+2676310 MS.gene21926:CDS
CTTTGTCTGAAGTGGAAATC+GGG 0.496076 5.1:-2674947 None:intergenic
TGAAGTGAAACCTGGCAATC+CGG 0.499808 5.1:+2672339 MS.gene21926:CDS
TTAGATGGCTTGGCTTCAGT+TGG 0.504936 5.1:-2676224 None:intergenic
TCACCAAACTTAAGATTCAA+AGG 0.507727 5.1:-2673578 None:intergenic
CTCAACCTTGTTTGGCAGCA+AGG 0.509715 5.1:-2673549 None:intergenic
TGGGAGAGGACGTGGGAACT+GGG 0.512185 5.1:+2673852 MS.gene21926:CDS
AACTGGGAAATCCAAGAAGA+AGG 0.515282 5.1:+2675028 MS.gene21926:CDS
GTGTTCCTTGCTGCCAAACA+AGG 0.525261 5.1:+2673544 MS.gene21926:CDS
TTTCAGGCTACTCTAGGCGT+TGG 0.525313 5.1:+2673461 MS.gene21926:intron
TATAACCAATCCATTTGGAT+AGG 0.528390 5.1:-2676255 None:intergenic
ACAAAATACCTCCACTACTC+CGG 0.530163 5.1:-2673967 None:intergenic
CAATGCAAAAGTGATTCATT+GGG 0.534185 5.1:+2673833 MS.gene21926:intron
ATGAGAGACATTGTTCTGGT+TGG 0.538743 5.1:-2675918 None:intergenic
GCACCCTTTAAGTTTCGACT+TGG 0.542842 5.1:+2676520 MS.gene21926:CDS
GTTTGGTGAGGATGACTTGG+TGG 0.548655 5.1:+2673592 MS.gene21926:CDS
TGTACACATCTTCGCCAGTC+CGG 0.549126 5.1:+2673948 MS.gene21926:CDS
AAGGCTGAAACAGAAACAAA+AGG 0.552836 5.1:+2674987 MS.gene21926:CDS
TCGTCAGTACTATACGGAAC+CGG 0.556211 5.1:-2672358 None:intergenic
CACCAAACTTAAGATTCAAA+GGG 0.556434 5.1:-2673577 None:intergenic
GTTATAGAGGACATATCTAT+GGG 0.558134 5.1:+2676272 MS.gene21926:CDS
CAAAAGTGATTCATTGGGAG+AGG 0.559260 5.1:+2673838 MS.gene21926:intron
GAGAACCTATCCAAATGGAT+TGG 0.560765 5.1:+2676250 MS.gene21926:CDS
TCTTCGCCAGTCCGGAGTAG+TGG 0.561425 5.1:+2673956 MS.gene21926:CDS
TAAGTTTGGTGAGGATGACT+TGG 0.562154 5.1:+2673589 MS.gene21926:CDS
GGAGGAAAGTGCTCATGTAA+AGG 0.563185 5.1:+2675844 MS.gene21926:CDS
AGGATGAGCAGCTGCAAGAT+GGG 0.567860 5.1:+2675105 MS.gene21926:CDS
AGGTGTAGGACAAGTCATCA+AGG 0.569087 5.1:+2676626 MS.gene21926:intron
TTGGTGGCATTCTCGGTCGT+CGG 0.569677 5.1:+2673608 MS.gene21926:CDS
TCAGGGATTGAAGTGAAACC+TGG 0.572044 5.1:+2672331 None:intergenic
TTTGAATCTTAAGTTTGGTG+AGG 0.577124 5.1:+2673580 MS.gene21926:CDS
CAAGTTGAAAGATCATGGTA+AGG 0.578952 5.1:+2675823 MS.gene21926:CDS
AATGTCTCTCATGCAAAGGA+TGG 0.579761 5.1:+2675929 MS.gene21926:CDS
TTGGAAAGTGAAGATGAAGA+TGG 0.586293 5.1:+2674921 MS.gene21926:CDS
AGCTAAATCTGAGTCTCAGA+AGG 0.587477 5.1:+2674968 MS.gene21926:CDS
GATATGGTGACAAACGTGTT+GGG 0.590168 5.1:+2676955 MS.gene21926:intron
AGGAAAGCTTCACGTCACTC+AGG 0.592401 5.1:+2672387 MS.gene21926:CDS
ATATCTATGGGCAAACCAGA+TGG 0.595038 5.1:+2676284 MS.gene21926:CDS
GGTGTAGGACAAGTCATCAA+GGG 0.596781 5.1:+2676627 MS.gene21926:intron
GAGGATGAGCAGCTGCAAGA+TGG 0.601018 5.1:+2675104 MS.gene21926:CDS
GGACGTGGGAACTGGGTCAG+AGG 0.603866 5.1:+2673859 MS.gene21926:CDS
AGGACAAGTCATCAAGGGGT+GGG 0.609520 5.1:+2676632 MS.gene21926:CDS
ATACCTCCACTACTCCGGAC+TGG 0.610928 5.1:-2673962 None:intergenic
GAACAATGTCTCTCATGCAA+AGG 0.611604 5.1:+2675925 MS.gene21926:CDS
TAGGACAAGTCATCAAGGGG+TGG 0.614183 5.1:+2676631 MS.gene21926:CDS
TCGCCAGTCCGGAGTAGTGG+AGG 0.614191 5.1:+2673959 MS.gene21926:CDS
GTTGAAAGATCATGGTAAGG+AGG 0.614660 5.1:+2675826 MS.gene21926:CDS
ATGCAAAGGATGGAGATGAT+GGG 0.616446 5.1:+2675939 MS.gene21926:CDS
ATTTCATACCCCATAGATGG+TGG 0.621077 5.1:-2676800 None:intergenic
AGATATGGTGACAAACGTGT+TGG 0.627092 5.1:+2676954 MS.gene21926:intron
TCCGTATAGTACTGACGATG+TGG 0.632230 5.1:+2672363 MS.gene21926:CDS
TCTAGGCGTTGGTCCATCGA+CGG 0.649382 5.1:+2673472 MS.gene21926:CDS
TATAGTACTGACGATGTGGA+AGG 0.650155 5.1:+2672367 MS.gene21926:CDS
AAAAGTTCAAGCTGTCGATG+AGG 0.663434 5.1:+2675085 MS.gene21926:CDS
GTGTAGGACAAGTCATCAAG+GGG 0.668593 5.1:+2676628 MS.gene21926:CDS
GCCAGATGAAAAGTCTGAGG+AGG 0.674614 5.1:+2675883 MS.gene21926:CDS
TGTGCCAGATGAAAAGTCTG+AGG 0.679651 5.1:+2675880 MS.gene21926:CDS
GATTCATTGGGAGAGGACGT+GGG 0.690481 5.1:+2673845 MS.gene21926:CDS
GCTCACTTGAAAGAGAAACC+CGG 0.694878 5.1:+2674849 MS.gene21926:CDS
TTACAATTCCACCATCTATG+GGG 0.701878 5.1:+2676792 MS.gene21926:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTTATTTATGAATC+CGG - chr5.1:2674145-2674164 None:intergenic 10.0%
!! ACGTTAACTAAAATATTATA+GGG + chr5.1:2674194-2674213 MS.gene21926:intron 15.0%
!! CAAATAAATGCATATTATAT+AGG - chr5.1:2673322-2673341 None:intergenic 15.0%
!! CAATTATTATTTATCATCTA+AGG - chr5.1:2672652-2672671 None:intergenic 15.0%
!! TAATTACTAAACACTTTAAT+AGG - chr5.1:2674296-2674315 None:intergenic 15.0%
!!! ATTTATCTTTTATTTTCTTC+AGG + chr5.1:2676743-2676762 MS.gene21926:intron 15.0%
!!! CAATTTTTAAAAAACAGATT+TGG - chr5.1:2675667-2675686 None:intergenic 15.0%
!!! TTAAATTTTAAAAATGTTCC+TGG - chr5.1:2674329-2674348 None:intergenic 15.0%
!!! TTTATCTTTTATTTTCTTCA+GGG + chr5.1:2676744-2676763 MS.gene21926:intron 15.0%
!!! TTTGAAAATTCAAAAACTTT+TGG + chr5.1:2675287-2675306 MS.gene21926:intron 15.0%
!! AAAGAAAACTGAAAAATACA+AGG + chr5.1:2674637-2674656 MS.gene21926:intron 20.0%
!! AAGAAACTGGATTATAAAAT+AGG - chr5.1:2676405-2676424 None:intergenic 20.0%
!! AATAAATAATCCAGATACTT+TGG + chr5.1:2675220-2675239 MS.gene21926:intron 20.0%
!! AATCTTATTACGTTATTACT+AGG - chr5.1:2676688-2676707 None:intergenic 20.0%
!! AATTGAAGTATATGCATTAT+TGG + chr5.1:2672672-2672691 MS.gene21926:intron 20.0%
!! ATAAATAATCCAGATACTTT+GGG + chr5.1:2675221-2675240 MS.gene21926:intron 20.0%
!! CAAACGATAAATATAGATAA+AGG - chr5.1:2676605-2676624 None:intergenic 20.0%
!! CAATATTGTACATTTCTAAA+TGG - chr5.1:2675553-2675572 None:intergenic 20.0%
!! CACGTTAACTAAAATATTAT+AGG + chr5.1:2674193-2674212 MS.gene21926:intron 20.0%
!! CGTTAACTAAAATATTATAG+GGG + chr5.1:2674195-2674214 MS.gene21926:intron 20.0%
!! GAATTAAAAGACAAACTATT+TGG - chr5.1:2675639-2675658 None:intergenic 20.0%
!! GAATTAATGTGTTGAATTTA+TGG - chr5.1:2672826-2672845 None:intergenic 20.0%
!! TAAATTCAACACATTAATTC+TGG + chr5.1:2672826-2672845 MS.gene21926:intron 20.0%
!!! AAAATTCAAAAACTTTTGCT+AGG + chr5.1:2675291-2675310 MS.gene21926:intron 20.0%
!!! AAAATTCAAAAACTTTTGGT+AGG + chr5.1:2675389-2675408 MS.gene21926:intron 20.0%
!!! AGTAATTAATTTAGTTTTCC+AGG + chr5.1:2674308-2674327 MS.gene21926:intron 20.0%
!!! GATGTTTTTACTGTTTATTA+GGG + chr5.1:2672516-2672535 MS.gene21926:intron 20.0%
!!! TGATGTTTTTACTGTTTATT+AGG + chr5.1:2672515-2672534 MS.gene21926:intron 20.0%
!!! TTTGGTACATTTTTCATTAA+TGG + chr5.1:2675509-2675528 MS.gene21926:intron 20.0%
! AAATCATATTGGACTTCAAA+AGG - chr5.1:2673395-2673414 None:intergenic 25.0%
! AACAAGCTCAAAAAAAAACT+GGG + chr5.1:2675012-2675031 MS.gene21926:CDS 25.0%
! AAGTCAATAACTAAAAACCA+AGG - chr5.1:2673205-2673224 None:intergenic 25.0%
! ACAAAAGCTAGTTATTCAAA+AGG - chr5.1:2673707-2673726 None:intergenic 25.0%
! ACGACAAAATTATCACAAAA+AGG - chr5.1:2672880-2672899 None:intergenic 25.0%
! ACGTTTCTGATAATAATTTC+AGG + chr5.1:2675780-2675799 MS.gene21926:intron 25.0%
! ATCCCATTTAACAAAGAATA+TGG - chr5.1:2676892-2676911 None:intergenic 25.0%
! ATGAAAACTTGAAACAAACA+TGG + chr5.1:2674498-2674517 MS.gene21926:intron 25.0%
! ATGCCATATTCTTTGTTAAA+TGG + chr5.1:2676886-2676905 MS.gene21926:intron 25.0%
! GTATATCCATGTAATTCTAT+AGG - chr5.1:2672720-2672739 None:intergenic 25.0%
! TATCTATATTTATCGTTTGC+AGG + chr5.1:2676606-2676625 MS.gene21926:intron 25.0%
! TCGTAACCATAAAATCATAT+TGG - chr5.1:2673406-2673425 None:intergenic 25.0%
! TGAAAACTTGAAACAAACAT+GGG + chr5.1:2674499-2674518 MS.gene21926:intron 25.0%
! TGCCATATTCTTTGTTAAAT+GGG + chr5.1:2676887-2676906 MS.gene21926:intron 25.0%
! TGGAAAAAACATCATGTTAT+TGG - chr5.1:2674085-2674104 None:intergenic 25.0%
! TTAATAGGATTAAGATTCCT+AGG - chr5.1:2674281-2674300 None:intergenic 25.0%
! TTATATGTATGAGCATTTGA+TGG - chr5.1:2674017-2674036 None:intergenic 25.0%
! TTATTCCCATGTTAAAGTAT+GGG - chr5.1:2674443-2674462 None:intergenic 25.0%
! TTTAACATGGGAATAAAAAG+TGG + chr5.1:2674447-2674466 MS.gene21926:intron 25.0%
! TTTATTCCCATGTTAAAGTA+TGG - chr5.1:2674444-2674463 None:intergenic 25.0%
! TTTCTATTCCTAAATCAAAC+AGG - chr5.1:2675193-2675212 None:intergenic 25.0%
!! AAAAACAAGTTGAAAGATCA+TGG + chr5.1:2675818-2675837 MS.gene21926:CDS 25.0%
!! AAAACTGAAACAGATTTTAG+TGG + chr5.1:2675470-2675489 MS.gene21926:intron 25.0%
!! AAAATATTTGACTCGTGTAT+TGG + chr5.1:2676493-2676512 MS.gene21926:CDS 25.0%
!! AATAATTTCACGACTTTTCT+TGG + chr5.1:2672942-2672961 MS.gene21926:intron 25.0%
!! AATATAAGCCATGAATTTTG+TGG - chr5.1:2676987-2677006 None:intergenic 25.0%
!! AGTTTTCATAAATTATGCCT+AGG - chr5.1:2674487-2674506 None:intergenic 25.0%
!! TAACTTTTTAATAATCCACG+TGG + chr5.1:2675137-2675156 MS.gene21926:intron 25.0%
!! TGAAGTCCAATATGATTTTA+TGG + chr5.1:2673397-2673416 MS.gene21926:intron 25.0%
!! TGATAATTTTGTCGTTGAAT+TGG + chr5.1:2672885-2672904 MS.gene21926:intron 25.0%
!!! AAACAGTTTTTCAGATACTT+TGG + chr5.1:2675166-2675185 MS.gene21926:intron 25.0%
!!! AAACTGAAACAGATTTTAGT+GGG + chr5.1:2675471-2675490 MS.gene21926:intron 25.0%
!!! AACAGTTTTTCAGATACTTT+GGG + chr5.1:2675167-2675186 MS.gene21926:intron 25.0%
!!! GATGTTTTTTCCAGTAAATT+TGG + chr5.1:2674092-2674111 MS.gene21926:intron 25.0%
!!! TAAGAGTTTATGGTGTTTTT+TGG + chr5.1:2676059-2676078 MS.gene21926:intron 25.0%
!!! TCTGAATTTGATAGTGAAAA+TGG + chr5.1:2673887-2673906 MS.gene21926:CDS 25.0%
!!! TGACAAATCATTTTTATCAG+CGG - chr5.1:2673249-2673268 None:intergenic 25.0%
!!! TTTGAATAACTAGCTTTTGT+TGG + chr5.1:2673707-2673726 MS.gene21926:intron 25.0%
!!! TTTTGAGAACTAAATCAAAC+AGG - chr5.1:2675247-2675266 None:intergenic 25.0%
AAAAAATAAGCCCATCCAAA+TGG + chr5.1:2673178-2673197 MS.gene21926:intron 30.0%
AAAAATAAGCCCATCCAAAT+GGG + chr5.1:2673179-2673198 MS.gene21926:intron 30.0%
AAACTATCCAATGATGAGTA+AGG + chr5.1:2675962-2675981 MS.gene21926:intron 30.0%
AAAGAAGAAAAAGACCAAAG+AGG + chr5.1:2676115-2676134 MS.gene21926:CDS 30.0%
AAAGAATATGGCATCTAACA+CGG - chr5.1:2676880-2676899 None:intergenic 30.0%
AAATCACACCAAAGACATAT+TGG - chr5.1:2676829-2676848 None:intergenic 30.0%
AACCATTCGTTGTATAATCT+AGG + chr5.1:2672544-2672563 MS.gene21926:intron 30.0%
AACCTAGATTATACAACGAA+TGG - chr5.1:2672549-2672568 None:intergenic 30.0%
AACTATCCAATGATGAGTAA+GGG + chr5.1:2675963-2675982 MS.gene21926:intron 30.0%
AAGAGTTAAAATAGTGTGAG+TGG + chr5.1:2674372-2674391 MS.gene21926:intron 30.0%
AAGATTCCCATACTTTAACA+TGG + chr5.1:2674434-2674453 MS.gene21926:intron 30.0%
AAGGATTAAATTTACAGTCC+TGG + chr5.1:2674230-2674249 MS.gene21926:intron 30.0%
ACAATGCAAAAGTGATTCAT+TGG + chr5.1:2673832-2673851 MS.gene21926:intron 30.0%
AGAAGAATACAAAACAGAGA+AGG - chr5.1:2676014-2676033 None:intergenic 30.0%
AGAGTTAAAATAGTGTGAGT+GGG + chr5.1:2674373-2674392 MS.gene21926:intron 30.0%
AGATTCCCATACTTTAACAT+GGG + chr5.1:2674435-2674454 MS.gene21926:intron 30.0%
AGGATTAAATTTACAGTCCT+GGG + chr5.1:2674231-2674250 MS.gene21926:intron 30.0%
ATAATCCAGTTTCTTCTGAT+AGG + chr5.1:2676410-2676429 MS.gene21926:intron 30.0%
ATACCAAGTCGAAACTTAAA+GGG - chr5.1:2676526-2676545 None:intergenic 30.0%
ATGCATTTATTTGCTTGCAT+TGG + chr5.1:2673329-2673348 MS.gene21926:intron 30.0%
CAATGCAAAAGTGATTCATT+GGG + chr5.1:2673833-2673852 MS.gene21926:intron 30.0%
CACCAAACTTAAGATTCAAA+GGG - chr5.1:2673580-2673599 None:intergenic 30.0%
CCAACACAAATATAGACAAA+GGG - chr5.1:2675740-2675759 None:intergenic 30.0%
GAAATTGTCCAATATGTCTT+TGG + chr5.1:2676818-2676837 MS.gene21926:intron 30.0%
GAACAAGCTCAAAAAAAAAC+TGG + chr5.1:2675011-2675030 MS.gene21926:CDS 30.0%
GAAGAATACAAAACAGAGAA+GGG - chr5.1:2676013-2676032 None:intergenic 30.0%
GCTTATATTTGATGTTGAGT+TGG + chr5.1:2676998-2677017 MS.gene21926:CDS 30.0%
GGTCAAACAAAATTACACAT+TGG - chr5.1:2676384-2676403 None:intergenic 30.0%
GTTATAGAGGACATATCTAT+GGG + chr5.1:2676272-2676291 MS.gene21926:CDS 30.0%
TAGTATTTGCTTTGCTTTGT+TGG + chr5.1:2673274-2673293 MS.gene21926:intron 30.0%
TATAACCAATCCATTTGGAT+AGG - chr5.1:2676258-2676277 None:intergenic 30.0%
TCACCAAACTTAAGATTCAA+AGG - chr5.1:2673581-2673600 None:intergenic 30.0%
TCCAACACAAATATAGACAA+AGG - chr5.1:2675741-2675760 None:intergenic 30.0%
TGCATTCCTATAGAATTACA+TGG + chr5.1:2672711-2672730 MS.gene21926:intron 30.0%
TGCTAACTGTTAAGAGTTTA+TGG + chr5.1:2676049-2676068 MS.gene21926:intron 30.0%
TTAAATGGGATGACTTTGAT+TGG + chr5.1:2676901-2676920 MS.gene21926:intron 30.0%
! GAAATCCTTGTTTGATATTC+AGG + chr5.1:2676432-2676451 MS.gene21926:intron 30.0%
! TTTGAATCTTAAGTTTGGTG+AGG + chr5.1:2673580-2673599 MS.gene21926:CDS 30.0%
!! ATATTTGATGTTGAGTTGGT+TGG + chr5.1:2677002-2677021 MS.gene21926:CDS 30.0%
!! TTTATTTTCTTCAGGGATGA+GGG + chr5.1:2676751-2676770 MS.gene21926:intron 30.0%
!!! AGCTTTGTTTTCATTGAATC+TGG + chr5.1:2672481-2672500 MS.gene21926:intron 30.0%
!!! CACTTCCAATTTTGTTTTCA+CGG - chr5.1:2675578-2675597 None:intergenic 30.0%
!!! TGGGCTTATTTTTTAGCTTA+TGG - chr5.1:2673172-2673191 None:intergenic 30.0%
!!! TTTTATTTTCTTCAGGGATG+AGG + chr5.1:2676750-2676769 MS.gene21926:intron 30.0%
AAAAATGATTCGTGCACGTT+TGG + chr5.1:2672986-2673005 MS.gene21926:intron 35.0%
AAATTTGGTCCAGAATGATC+TGG + chr5.1:2674107-2674126 MS.gene21926:intron 35.0%
AAGAATATGGCATCTAACAC+GGG - chr5.1:2676879-2676898 None:intergenic 35.0%
AAGGCTGAAACAGAAACAAA+AGG + chr5.1:2674987-2675006 MS.gene21926:CDS 35.0%
AATTTGGTCCAGAATGATCT+GGG + chr5.1:2674108-2674127 MS.gene21926:intron 35.0%
ACAATTTCATACCCCATAGA+TGG - chr5.1:2676806-2676825 None:intergenic 35.0%
ACTGACCTGAATATCAAACA+AGG - chr5.1:2676440-2676459 None:intergenic 35.0%
ACTTACAATTCCACCATCTA+TGG + chr5.1:2676790-2676809 MS.gene21926:CDS 35.0%
ACTTCAAATTCAAACGCAGA+TGG - chr5.1:2672448-2672467 None:intergenic 35.0%
AGCAAAGCAATCGAAGAAAA+AGG + chr5.1:2674818-2674837 MS.gene21926:CDS 35.0%
AGCAAGGAACACAAAAAAAC+TGG - chr5.1:2673536-2673555 None:intergenic 35.0%
AGGTGACAATAAGTTTGTCT+TGG + chr5.1:2674902-2674921 MS.gene21926:CDS 35.0%
ATACTTGAAATGACACTCGA+GGG + chr5.1:2672736-2672755 MS.gene21926:intron 35.0%
ATGAGTGGGAGTAAACAATA+AGG - chr5.1:2674597-2674616 None:intergenic 35.0%
ATTCCTAGGAATAATGTTCC+AGG - chr5.1:2674267-2674286 None:intergenic 35.0%
CATACCAAGTCGAAACTTAA+AGG - chr5.1:2676527-2676546 None:intergenic 35.0%
CATTCCTGATGCATGAAAAT+AGG + chr5.1:2674614-2674633 MS.gene21926:intron 35.0%
CCCTTTGTCTATATTTGTGT+TGG + chr5.1:2675737-2675756 MS.gene21926:intron 35.0%
CTAAAATTTCAGGCTACTCT+AGG + chr5.1:2673455-2673474 MS.gene21926:intron 35.0%
CTTACAATTCCACCATCTAT+GGG + chr5.1:2676791-2676810 MS.gene21926:CDS 35.0%
GATTTCCTATCAGAAGAAAC+TGG - chr5.1:2676418-2676437 None:intergenic 35.0%
GCACAAAATAACCAGAAAGA+TGG - chr5.1:2673646-2673665 None:intergenic 35.0%
GGAGTATACCACAAAATTCA+TGG + chr5.1:2676976-2676995 MS.gene21926:CDS 35.0%
GGATTGCAGAATGTAACATT+GGG - chr5.1:2674536-2674555 None:intergenic 35.0%
GGGTATACCGATAAAACTTA+GGG - chr5.1:2674573-2674592 None:intergenic 35.0%
GGTATACCGATAAAACTTAG+GGG - chr5.1:2674572-2674591 None:intergenic 35.0%
GGTTATAGAGGACATATCTA+TGG + chr5.1:2676271-2676290 MS.gene21926:CDS 35.0%
GTATACCGATAAAACTTAGG+GGG - chr5.1:2674571-2674590 None:intergenic 35.0%
TAAAGCTGTTGTAGAGATGT+TGG - chr5.1:2675603-2675622 None:intergenic 35.0%
TATACTTGAAATGACACTCG+AGG + chr5.1:2672735-2672754 MS.gene21926:intron 35.0%
TATTTATCGTTTGCAGGTGT+AGG + chr5.1:2676612-2676631 MS.gene21926:intron 35.0%
TCACGACTTCAAAAAAGGTA+AGG - chr5.1:2674752-2674771 None:intergenic 35.0%
TCATTCTGGACCAAATTTAC+TGG - chr5.1:2674105-2674124 None:intergenic 35.0%
TCCTCTATAACCAATCCATT+TGG - chr5.1:2676263-2676282 None:intergenic 35.0%
TGAAAACCCTTACTCATCAT+TGG - chr5.1:2675972-2675991 None:intergenic 35.0%
TGCCCTTTGAATCTTAAGTT+TGG + chr5.1:2673575-2673594 MS.gene21926:CDS 35.0%
TGGATTGCAGAATGTAACAT+TGG - chr5.1:2674537-2674556 None:intergenic 35.0%
TGGGTATACCGATAAAACTT+AGG - chr5.1:2674574-2674593 None:intergenic 35.0%
TGTTCGTTGTTATGCAGATA+TGG + chr5.1:2676939-2676958 MS.gene21926:intron 35.0%
TTACAATTCCACCATCTATG+GGG + chr5.1:2676792-2676811 MS.gene21926:CDS 35.0%
TTCCCAAAACTGATGAATAG+AGG - chr5.1:2675348-2675367 None:intergenic 35.0%
TTCCTAGGAATAATGTTCCA+GGG - chr5.1:2674266-2674285 None:intergenic 35.0%
TTGCTCCGTGAAAACAAAAT+TGG + chr5.1:2675570-2675589 MS.gene21926:intron 35.0%
TTGGAAAGTGAAGATGAAGA+TGG + chr5.1:2674921-2674940 MS.gene21926:CDS 35.0%
TTTATTCCCATGGGAATAAG+AGG - chr5.1:2674415-2674434 None:intergenic 35.0%
! AACATCTTTTGCCTTCTTCT+TGG - chr5.1:2675042-2675061 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG + chr5.1:2675342-2675361 MS.gene21926:intron 35.0%
! AGAGTAGCCTGAAATTTTAG+AGG - chr5.1:2673455-2673474 None:intergenic 35.0%
! ATGGGAATCTTTTATTCCCA+TGG - chr5.1:2674425-2674444 None:intergenic 35.0%
! CAAGTTGAAAGATCATGGTA+AGG + chr5.1:2675823-2675842 MS.gene21926:CDS 35.0%
! CTCCTCTATTCATCAGTTTT+GGG + chr5.1:2675343-2675362 MS.gene21926:intron 35.0%
! CTTTCCTATTTTCATGCATC+AGG - chr5.1:2674621-2674640 None:intergenic 35.0%
! TGGGAATCTTTTATTCCCAT+GGG - chr5.1:2674424-2674443 None:intergenic 35.0%
! TGTCTGGAGTTTGGTTAATT+GGG + chr5.1:2673361-2673380 MS.gene21926:intron 35.0%
! TTTTTCTTCGATTGCTTTGC+TGG - chr5.1:2674819-2674838 None:intergenic 35.0%
!! AAACACCCCCTAAGTTTTAT+CGG + chr5.1:2674563-2674582 MS.gene21926:intron 35.0%
!! AGATTTAGCTTTGTCTGAAG+TGG - chr5.1:2674958-2674977 None:intergenic 35.0%
!! GAATTGGTTTGATGGTTACT+TGG + chr5.1:2672901-2672920 MS.gene21926:intron 35.0%
!! TAGCCTGAAATTTTAGAGGA+CGG - chr5.1:2673451-2673470 None:intergenic 35.0%
!! TCCAAATGGATTGGTTATAG+AGG + chr5.1:2676259-2676278 MS.gene21926:CDS 35.0%
!! TTGTCGTTGAATTGGTTTGA+TGG + chr5.1:2672893-2672912 MS.gene21926:intron 35.0%
!!! AAACTGTTTTTGAATCCACG+TGG - chr5.1:2675155-2675174 None:intergenic 35.0%
!!! CTTTTTTGACGATAGCGATA+TGG + chr5.1:2673922-2673941 MS.gene21926:CDS 35.0%
!!! GAAACAGATTTTAGTGGGTT+TGG + chr5.1:2675476-2675495 MS.gene21926:intron 35.0%
!!! GGGTTTGGTTTTCAGTTTTT+TGG + chr5.1:2675491-2675510 MS.gene21926:intron 35.0%
!!! TCTTGTTTTTCTTCTCAACG+AGG - chr5.1:2676091-2676110 None:intergenic 35.0%
AAAAAGACCAAAGAGGCTGA+AGG + chr5.1:2676122-2676141 MS.gene21926:CDS 40.0%
AAAAGTTCAAGCTGTCGATG+AGG + chr5.1:2675085-2675104 MS.gene21926:CDS 40.0%
AACCAGAAAGATGGATGCTT+CGG - chr5.1:2673637-2673656 None:intergenic 40.0%
AACGTGAGAACCTATCCAAA+TGG + chr5.1:2676245-2676264 MS.gene21926:CDS 40.0%
AACTGGGAAATCCAAGAAGA+AGG + chr5.1:2675028-2675047 MS.gene21926:CDS 40.0%
AAGAGCTGATCTTGGAAAGA+AGG + chr5.1:2676310-2676329 MS.gene21926:CDS 40.0%
AATGTCTCTCATGCAAAGGA+TGG + chr5.1:2675929-2675948 MS.gene21926:CDS 40.0%
ACAAAATACCTCCACTACTC+CGG - chr5.1:2673970-2673989 None:intergenic 40.0%
ACTAAAAACCAAGGCCCATT+TGG - chr5.1:2673196-2673215 None:intergenic 40.0%
AGATATGGTGACAAACGTGT+TGG + chr5.1:2676954-2676973 MS.gene21926:intron 40.0%
AGCTAAATCTGAGTCTCAGA+AGG + chr5.1:2674968-2674987 MS.gene21926:CDS 40.0%
AGTGGGAGTAAACAATAAGG+TGG - chr5.1:2674594-2674613 None:intergenic 40.0%
ATATCTATGGGCAAACCAGA+TGG + chr5.1:2676284-2676303 MS.gene21926:CDS 40.0%
ATGAGAGACATTGTTCTGGT+TGG - chr5.1:2675921-2675940 None:intergenic 40.0%
ATGCAAAGGATGGAGATGAT+GGG + chr5.1:2675939-2675958 MS.gene21926:CDS 40.0%
ATTTCATACCCCATAGATGG+TGG - chr5.1:2676803-2676822 None:intergenic 40.0%
CAAAAGTGATTCATTGGGAG+AGG + chr5.1:2673838-2673857 MS.gene21926:intron 40.0%
CAGGTCAGTGTTAGATATAC+CGG + chr5.1:2676451-2676470 MS.gene21926:intron 40.0%
CTCGATCACGACTTCAAAAA+AGG - chr5.1:2674757-2674776 None:intergenic 40.0%
GAACAATGTCTCTCATGCAA+AGG + chr5.1:2675925-2675944 MS.gene21926:CDS 40.0%
GAGAACCTATCCAAATGGAT+TGG + chr5.1:2676250-2676269 MS.gene21926:CDS 40.0%
GATATGGTGACAAACGTGTT+GGG + chr5.1:2676955-2676974 MS.gene21926:intron 40.0%
GTGGGAGTAAACAATAAGGT+GGG - chr5.1:2674593-2674612 None:intergenic 40.0%
GTTGAAAGATCATGGTAAGG+AGG + chr5.1:2675826-2675845 MS.gene21926:CDS 40.0%
TACTTGAAATGACACTCGAG+GGG + chr5.1:2672737-2672756 MS.gene21926:intron 40.0%
TAGTGTGAGTGGGAAGTTAT+AGG + chr5.1:2674383-2674402 MS.gene21926:intron 40.0%
TCCACATCGTCAGTACTATA+CGG - chr5.1:2672367-2672386 None:intergenic 40.0%
TGAAACAAACATGGGAACGT+AGG + chr5.1:2674507-2674526 MS.gene21926:intron 40.0%
TGGAAAAGTCATGTGTACCT+AGG + chr5.1:2674467-2674486 MS.gene21926:intron 40.0%
TGGTTACCTCTTATTCCCAT+GGG + chr5.1:2674406-2674425 MS.gene21926:intron 40.0%
TTCATGCATCAGGAATGAGT+GGG - chr5.1:2674611-2674630 None:intergenic 40.0%
TTCCCTGGAACATTATTCCT+AGG + chr5.1:2674261-2674280 MS.gene21926:intron 40.0%
TTGCATGAGAGACATTGTTC+TGG - chr5.1:2675925-2675944 None:intergenic 40.0%
TTGTACATTCCTTCTGCACA+AGG + chr5.1:2672585-2672604 MS.gene21926:intron 40.0%
TTGTCACCTCTAATGACAAC+TGG - chr5.1:2674891-2674910 None:intergenic 40.0%
TTTCATGCATCAGGAATGAG+TGG - chr5.1:2674612-2674631 None:intergenic 40.0%
! ACTTTGGGCCTGTTTGATTT+AGG + chr5.1:2675182-2675201 MS.gene21926:intron 40.0%
! ATAGGGGTGTGTTTGTTTCA+AGG + chr5.1:2674211-2674230 MS.gene21926:intron 40.0%
! CTTTGTCTGAAGTGGAAATC+GGG - chr5.1:2674950-2674969 None:intergenic 40.0%
! GCTGGATTATCTCCATTTTC+AGG - chr5.1:2674801-2674820 None:intergenic 40.0%
! GCTTTGTCTGAAGTGGAAAT+CGG - chr5.1:2674951-2674970 None:intergenic 40.0%
! GTGTCTGGAGTTTGGTTAAT+TGG + chr5.1:2673360-2673379 MS.gene21926:intron 40.0%
! TAAGTTTGGTGAGGATGACT+TGG + chr5.1:2673589-2673608 MS.gene21926:CDS 40.0%
! TTGATGGTTACTTGGCACTT+CGG + chr5.1:2672909-2672928 MS.gene21926:intron 40.0%
!! AGCCTGAAATTTTAGAGGAC+GGG - chr5.1:2673450-2673469 None:intergenic 40.0%
!! ATTTTCAGGCTGATTGTCGT+CGG - chr5.1:2674787-2674806 None:intergenic 40.0%
!! TATAGTACTGACGATGTGGA+AGG + chr5.1:2672367-2672386 MS.gene21926:CDS 40.0%
!! TTCCCGTCCTCTAAAATTTC+AGG + chr5.1:2673445-2673464 MS.gene21926:intron 40.0%
!!! CTTAGGGGGTGTTTGTTTTA+TGG - chr5.1:2674557-2674576 None:intergenic 40.0%
!!! CTTTTTTGAAGTCGTGATCG+AGG + chr5.1:2674755-2674774 MS.gene21926:intron 40.0%
AAAACCAAGGCCCATTTGGA+TGG - chr5.1:2673192-2673211 None:intergenic 45.0%
AAACCAAGGCCCATTTGGAT+GGG - chr5.1:2673191-2673210 None:intergenic 45.0%
ACCAGAAAGATGGATGCTTC+GGG - chr5.1:2673636-2673655 None:intergenic 45.0%
ACCGGCAAGCTACAAAAAGA+TGG + chr5.1:2676469-2676488 MS.gene21926:CDS 45.0%
AGCGGATGTATGCTAGATGA+AGG - chr5.1:2673231-2673250 None:intergenic 45.0%
AGGTGTAGGACAAGTCATCA+AGG + chr5.1:2676626-2676645 MS.gene21926:intron 45.0%
CAGCTTCCAGTTGTCATTAG+AGG + chr5.1:2674882-2674901 MS.gene21926:CDS 45.0%
CATGCAAAGGATGGAGATGA+TGG + chr5.1:2675938-2675957 MS.gene21926:CDS 45.0%
CCGGCAAGCTACAAAAAGAT+GGG + chr5.1:2676470-2676489 MS.gene21926:CDS 45.0%
CTTCACGTCACTCAGGTTAT+TGG + chr5.1:2672394-2672413 MS.gene21926:intron 45.0%
GACACTTCTGATTGAAGGTG+CGG - chr5.1:2672616-2672635 None:intergenic 45.0%
GACGACAATCAGCCTGAAAA+TGG + chr5.1:2674786-2674805 MS.gene21926:CDS 45.0%
GATGGCAAAAGAGCTGATCT+TGG + chr5.1:2676302-2676321 MS.gene21926:CDS 45.0%
GCTCACTTGAAAGAGAAACC+CGG + chr5.1:2674849-2674868 MS.gene21926:CDS 45.0%
GGATAGGTTCTCACGTTAGA+TGG - chr5.1:2676242-2676261 None:intergenic 45.0%
GGTGTAGGACAAGTCATCAA+GGG + chr5.1:2676627-2676646 MS.gene21926:intron 45.0%
GTAACACACCCAGATCATTC+TGG - chr5.1:2674119-2674138 None:intergenic 45.0%
GTGGTTACCTCTTATTCCCA+TGG + chr5.1:2674405-2674424 MS.gene21926:intron 45.0%
GTGTAGGACAAGTCATCAAG+GGG + chr5.1:2676628-2676647 MS.gene21926:CDS 45.0%
TCGTCAGTACTATACGGAAC+CGG - chr5.1:2672361-2672380 None:intergenic 45.0%
TGAAGTGAAACCTGGCAATC+CGG + chr5.1:2672339-2672358 MS.gene21926:CDS 45.0%
TGATTCGTGCACGTTTGGAT+TGG + chr5.1:2672991-2673010 MS.gene21926:intron 45.0%
TGTGAGTGGGAAGTTATAGG+TGG + chr5.1:2674386-2674405 MS.gene21926:intron 45.0%
TGTGCCAGATGAAAAGTCTG+AGG + chr5.1:2675880-2675899 MS.gene21926:CDS 45.0%
TTCCAGGGAATGTTATACCC+AGG - chr5.1:2674251-2674270 None:intergenic 45.0%
TTTCTTCAGGGATGAGGGTT+GGG + chr5.1:2676756-2676775 MS.gene21926:intron 45.0%
! ACCTCCTCAGACTTTTCATC+TGG - chr5.1:2675887-2675906 None:intergenic 45.0%
! AGAATGCTTTTCTCCGTCGA+TGG - chr5.1:2673488-2673507 None:intergenic 45.0%
! AGATCAGCTCTTTTGCCATC+TGG - chr5.1:2676302-2676321 None:intergenic 45.0%
! GCACCCTTTAAGTTTCGACT+TGG + chr5.1:2676520-2676539 MS.gene21926:CDS 45.0%
! GCACCTTCAATCAGAAGTGT+CGG + chr5.1:2672615-2672634 MS.gene21926:intron 45.0%
! TCAAACAGGCCCAAAGTATC+TGG - chr5.1:2675179-2675198 None:intergenic 45.0%
! TGGAAGCTGAGAACTTTTGC+CGG - chr5.1:2674871-2674890 None:intergenic 45.0%
! TTAGATGGCTTGGCTTCAGT+TGG - chr5.1:2676227-2676246 None:intergenic 45.0%
! TTTGCTTGCATTGGCACTTG+AGG + chr5.1:2673338-2673357 MS.gene21926:intron 45.0%
! TTTTCTTCAGGGATGAGGGT+TGG + chr5.1:2676755-2676774 MS.gene21926:intron 45.0%
!! CCCATCTTTTTGTAGCTTGC+CGG - chr5.1:2676473-2676492 None:intergenic 45.0%
!! GGAGGAAAGTGCTCATGTAA+AGG + chr5.1:2675844-2675863 MS.gene21926:CDS 45.0%
!! TCCGTATAGTACTGACGATG+TGG + chr5.1:2672363-2672382 MS.gene21926:CDS 45.0%
!! TTTTCAGGCTGATTGTCGTC+GGG - chr5.1:2674786-2674805 None:intergenic 45.0%
AGCATTCTTCAGTGCGCTTC+TGG + chr5.1:2673500-2673519 MS.gene21926:CDS 50.0%
AGCTTCTCCTTCAGCCTCTT+TGG - chr5.1:2676132-2676151 None:intergenic 50.0%
AGGAAAGCTTCACGTCACTC+AGG + chr5.1:2672387-2672406 MS.gene21926:CDS 50.0%
AGGACAAGTCATCAAGGGGT+GGG + chr5.1:2676632-2676651 MS.gene21926:CDS 50.0%
AGGATGAGCAGCTGCAAGAT+GGG + chr5.1:2675105-2675124 MS.gene21926:CDS 50.0%
GATCTGGGTGTGTTACATGC+CGG + chr5.1:2674123-2674142 MS.gene21926:intron 50.0%
GATTCATTGGGAGAGGACGT+GGG + chr5.1:2673845-2673864 MS.gene21926:CDS 50.0%
GCCAGATGAAAAGTCTGAGG+AGG + chr5.1:2675883-2675902 MS.gene21926:CDS 50.0%
GGTTCTCACGTTAGATGGCT+TGG - chr5.1:2676237-2676256 None:intergenic 50.0%
GTCCTGGGTATAACATTCCC+TGG + chr5.1:2674246-2674265 MS.gene21926:intron 50.0%
GTGTTCCTTGCTGCCAAACA+AGG + chr5.1:2673544-2673563 MS.gene21926:CDS 50.0%
TAGGACAAGTCATCAAGGGG+TGG + chr5.1:2676631-2676650 MS.gene21926:CDS 50.0%
TGATTCATTGGGAGAGGACG+TGG + chr5.1:2673844-2673863 MS.gene21926:CDS 50.0%
TGTACACATCTTCGCCAGTC+CGG + chr5.1:2673948-2673967 MS.gene21926:CDS 50.0%
TTCTTCAGGGATGAGGGTTG+GGG + chr5.1:2676757-2676776 MS.gene21926:intron 50.0%
TTTCAGGCTACTCTAGGCGT+TGG + chr5.1:2673461-2673480 MS.gene21926:intron 50.0%
! CACTTGAGGTGTCTGGAGTT+TGG + chr5.1:2673352-2673371 MS.gene21926:intron 50.0%
! CTCAACCTTGTTTGGCAGCA+AGG - chr5.1:2673552-2673571 None:intergenic 50.0%
! GCACCGACACTTCTGATTGA+AGG - chr5.1:2672621-2672640 None:intergenic 50.0%
! GGAAGCTGAGAACTTTTGCC+GGG - chr5.1:2674870-2674889 None:intergenic 50.0%
! GTTTGGTGAGGATGACTTGG+TGG + chr5.1:2673592-2673611 MS.gene21926:CDS 50.0%
! TCCCGAAGCATCCATCTTTC+TGG + chr5.1:2673632-2673651 MS.gene21926:CDS 50.0%
! TTCTGATTGAAGGTGCGGTG+CGG - chr5.1:2672611-2672630 None:intergenic 50.0%
!! GGATGACTTGGTGGCATTCT+CGG + chr5.1:2673601-2673620 MS.gene21926:CDS 50.0%
!! GTTGAGTTGGTTGGCGTTGA+AGG + chr5.1:2677011-2677030 MS.gene21926:CDS 50.0%
AAGCCCATCCAAATGGGCCT+TGG + chr5.1:2673185-2673204 MS.gene21926:intron 55.0%
ATACCTCCACTACTCCGGAC+TGG - chr5.1:2673965-2673984 None:intergenic 55.0%
CTATACGGAACCGGATTGCC+AGG - chr5.1:2672352-2672371 None:intergenic 55.0%
GAGGATGAGCAGCTGCAAGA+TGG + chr5.1:2675104-2675123 MS.gene21926:CDS 55.0%
GGGCACGTCTCAACCTTGTT+TGG - chr5.1:2673560-2673579 None:intergenic 55.0%
GTCATCAAGGGGTGGGATGT+TGG + chr5.1:2676639-2676658 MS.gene21926:CDS 55.0%
TCTCTCGTGTCGTCGTCATC+TGG - chr5.1:2673668-2673687 None:intergenic 55.0%
! GCATTGGCACTTGAGGTGTC+TGG + chr5.1:2673345-2673364 MS.gene21926:intron 55.0%
! TTGGTGGCATTCTCGGTCGT+CGG + chr5.1:2673608-2673627 MS.gene21926:CDS 55.0%
!! TCTAGGCGTTGGTCCATCGA+CGG + chr5.1:2673472-2673491 MS.gene21926:CDS 55.0%
GGGTGGGATGTTGGCGTCAA+TGG + chr5.1:2676648-2676667 MS.gene21926:CDS 60.0%
TCTTCGCCAGTCCGGAGTAG+TGG + chr5.1:2673956-2673975 MS.gene21926:CDS 60.0%
TGGGAGAGGACGTGGGAACT+GGG + chr5.1:2673852-2673871 MS.gene21926:CDS 60.0%
TTGGGAGAGGACGTGGGAAC+TGG + chr5.1:2673851-2673870 MS.gene21926:CDS 60.0%
GGACGTGGGAACTGGGTCAG+AGG + chr5.1:2673859-2673878 MS.gene21926:CDS 65.0%
TCGCCAGTCCGGAGTAGTGG+AGG + chr5.1:2673959-2673978 MS.gene21926:CDS 65.0%
! GCGGTGCGGCCTTGTGCAGA+AGG - chr5.1:2672597-2672616 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 2672335 2677040 2672335 ID=MS.gene21926
chr5.1 mRNA 2672335 2677040 2672335 ID=MS.gene21926.t1;Parent=MS.gene21926
chr5.1 exon 2672335 2672408 2672335 ID=MS.gene21926.t1.exon1;Parent=MS.gene21926.t1
chr5.1 CDS 2672335 2672408 2672335 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2673467 2673699 2673467 ID=MS.gene21926.t1.exon2;Parent=MS.gene21926.t1
chr5.1 CDS 2673467 2673699 2673467 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2673844 2673980 2673844 ID=MS.gene21926.t1.exon3;Parent=MS.gene21926.t1
chr5.1 CDS 2673844 2673980 2673844 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2674766 2675126 2674766 ID=MS.gene21926.t1.exon4;Parent=MS.gene21926.t1
chr5.1 CDS 2674766 2675126 2674766 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2675802 2675978 2675802 ID=MS.gene21926.t1.exon5;Parent=MS.gene21926.t1
chr5.1 CDS 2675802 2675978 2675802 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2676085 2676331 2676085 ID=MS.gene21926.t1.exon6;Parent=MS.gene21926.t1
chr5.1 CDS 2676085 2676331 2676085 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2676454 2676541 2676454 ID=MS.gene21926.t1.exon7;Parent=MS.gene21926.t1
chr5.1 CDS 2676454 2676541 2676454 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2676628 2676669 2676628 ID=MS.gene21926.t1.exon8;Parent=MS.gene21926.t1
chr5.1 CDS 2676628 2676669 2676628 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2676765 2676813 2676765 ID=MS.gene21926.t1.exon9;Parent=MS.gene21926.t1
chr5.1 CDS 2676765 2676813 2676765 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
chr5.1 exon 2676956 2677040 2676956 ID=MS.gene21926.t1.exon10;Parent=MS.gene21926.t1
chr5.1 CDS 2676956 2677040 2676956 ID=cds.MS.gene21926.t1;Parent=MS.gene21926.t1
Gene Sequence

>MS.gene21926

GGATTGAAGTGAAACCTGGCAATCCGGTTCCGTATAGTACTGACGATGTGGAAGGAAAGCTTCACGTCACTCAGGTTATTGGAATTTCTGAACAATTTTTGTGATAACTGCCATCTGCGTTTGAATTTGAAGTTTTTTCTTATATCAGCTTTGTTTTCATTGAATCTGGATGAATTTTATTGATGTTTTTACTGTTTATTAGGGTTCAAAACCATTCGTTGTATAATCTAGGTTTGTTTGTAAGACAGACTTGTACATTCCTTCTGCACAAGGCCGCACCGCACCTTCAATCAGAAGTGTCGGTGCTACAGAGACCTTAGATGATAAATAATAATTGAATTGAAGTATATGCATTATTGGACATTGTCGTAATATTTGCATTCCTATAGAATTACATGGATATACTTGAAATGACACTCGAGGGGTTTGAACTCTGAACTCTGTTGAATTACTTGTTGATATATTTTTTTTAAGTCATGAGATTTTTTCCATAAATTCAACACATTAATTCTGGTATTGTCTTGTAAGTGATTTTTCTGTTTCCTTTTTGTGATAATTTTGTCGTTGAATTGGTTTGATGGTTACTTGGCACTTCGGCTGTGATTGTAATAATTTCACGACTTTTCTTGGTGTTATCTATTCATCAGAGTTAAAAATGATTCGTGCACGTTTGGATTGGCTTATTTTTGAGCTTATGCAAATAAATAAGCTTCTATGTATTGTTCACAAGCTTGTCAAATTAGCTTATTAAAAAATAGCTTGTGAAGATACAATTTTCGTTAGTGATAACGCATGAATTAACATGAAAGCTTATTTATTTGCATAAGTTTTTTTCCATAAGCTAAAAAATAAGCCCATCCAAATGGGCCTTGGTTTTTAGTTATTGACTTATGCCTTCATCTAGCATACATCCGCTGATAAAAATGATTTGTCATAGTTTAGTATTTGCTTTGCTTTGTTGGATTTCAATATAACAGTTGCATTCCTATATAATATGCATTTATTTGCTTGCATTGGCACTTGAGGTGTCTGGAGTTTGGTTAATTGGGTGTTGATACCTTTTGAAGTCCAATATGATTTTATGGTTACGAATAATCACTAACATTTCTCTTCCCGTCCTCTAAAATTTCAGGCTACTCTAGGCGTTGGTCCATCGACGGAGAAAAGCATTCTTCAGTGCGCTTCTGGACGCAAAAATCCAGTTTTTTTGTGTTCCTTGCTGCCAAACAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGGTGAGGATGACTTGGTGGCATTCTCGGTCGTCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTGCCAGATGACGACGACACGAGAGATGACTATGAATAGTATCCTTTTGAATAACTAGCTTTTGTTGGTTTATTTTTATTTAATTTCAATTTTTTGCGCACATAGTTTTGATTAAACATAGTGATTATTGTTAATTTGTTATGCGCACGTTATCTTTGTTAACTCTTACTACAATGCAAAAGTGATTCATTGGGAGAGGACGTGGGAACTGGGTCAGAGGAGTCATCTGAATTTGATAGTGAAAATGGATATGATGATCACTTTTTTGACGATAGCGATATGGAAATGTACACATCTTCGCCAGTCCGGAGTAGTGGAGGTATTTTGTTTGTATCTTCGTGTTTTCTTGAAGCCATCAAATGCTCATACATATAATGCTCATGTGATTTGTTAATTTATTTATAGAAACATTAATATTATCCAATAACATGATGTTTTTTCCAGTAAATTTGGTCCAGAATGATCTGGGTGTGTTACATGCCGGATTCATAAATAAATATTATAGCAGATATGCTCTTATCATATATTTCTCACGTTAACTAAAATATTATAGGGGTGTGTTTGTTTCAAGGATTAAATTTACAGTCCTGGGTATAACATTCCCTGGAACATTATTCCTAGGAATCTTAATCCTATTAAAGTGTTTAGTAATTAATTTAGTTTTCCAGGAACATTTTTAAAATTTAATTTATAATTTAAAACAAAAAAATAAGAGTTAAAATAGTGTGAGTGGGAAGTTATAGGTGGTTACCTCTTATTCCCATGGGAATAAAAGATTCCCATACTTTAACATGGGAATAAAAAGTGGAAAAGTCATGTGTACCTAGGCATAATTTATGAAAACTTGAAACAAACATGGGAACGTAGGATTCCCAATGTTACATTCTGCAATCCATAAAACAAACACCCCCTAAGTTTTATCGGTATACCCACCTTATTGTTTACTCCCACTCATTCCTGATGCATGAAAATAGGAAAGAAAACTGAAAAATACAAGGAAAATGTTGTGTGAAATTCTACTGCTTCATAGTTTTTAAGATATTTCAATTGAAATCGACATGAAAAACGATATATGATTTGTTTGTTTCCTTACCTTTTTTGAAGTCGTGATCGAGGAAATACCCGACGACAATCAGCCTGAAAATGGAGATAATCCAGCAAAGCAATCGAAGAAAAAGGAACAAACAGCTCACTTGAAAGAGAAACCCGGCAAAAGTTCTCAGCTTCCAGTTGTCATTAGAGGTGACAATAAGTTTGTCTTGGAAAGTGAAGATGAAGATGGTTTCCCGATTTCCACTTCAGACAAAGCTAAATCTGAGTCTCAGAAGGCTGAAACAGAAACAAAAGGAGAACAAGCTCAAAAAAAAACTGGGAAATCCAAGAAGAAGGCAAAAGATGTTGATGAGTCTGCTAGCTTAAAACGAAAAGTTCAAGCTGTCGATGAGGATGAGCAGCTGCAAGATGGGTGAGATGCATAACTTTTTAATAATCCACGTGGATTCAAAAACAGTTTTTCAGATACTTTGGGCCTGTTTGATTTAGGAATAGAAAAATAGAAAATAAATAATCCAGATACTTTGGGCCTGTTTGATTTAGTTCTCAAAAACAGTTTTTCAGTTTAAAAATTTGAAAATTCAAAAACTTTTGCTAGGTTAATTTTACAAAACTAATTATGAAAACACTCCTCTATTCATCAGTTTTGGGAACTAATCAGTTTTTAAAATTTGAAAATTCAAAAACTTTTGGTAGGTTAATTTTACAAAACTAATTTTGAAAACACTCCTCTATTCATCAGTTTTGGGAACTACAAAACTGAAACAGATTTTAGTGGGTTTGGTTTTCAGTTTTTTGGTACATTTTTCATTAATGGTAGTTCTGTAATATTGTGCCATTTAGAAATGTACAATATTGCTCCGTGAAAACAAAATTGGAAGTGCACCAACATCTCTACAACAGCTTTAACAAATAAAATTACCAAATAGTTTGTCTTTTAATTCTTTCTCCAAATCTGTTTTTTAAAAATTGATTTATAAAATATATTTTGAATACTAAATAGTAAAACACATTCAAACAAGCCCTTTGTCTATATTTGTGTTGGATTGTGTTGCATTTAATTTAACGTTTCTGATAATAATTTCAGGAAAAAGAAGAAGAAGAAAAACAAGTTGAAAGATCATGGTAAGGAGGAAAGTGCTCATGTAAAGGAGACTAATGTTACTGTGCCAGATGAAAAGTCTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTCTCTCATGCAAAGGATGGAGATGATGGGAAACTATCCAATGATGAGTAAGGGTTTTCATTTATGAGTTGCATTGTTCCCTTCTCTGTTTTGTATTCTTCTCATTACATATTGTGTTGCTAACTGTTAAGAGTTTATGGTGTTTTTTGGCAGAGTCCTCGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGACCAAAGAGGCTGAAGGAGAAGCTGCTAAGAATGAAATTGCTACAACTGTTGAAAATCAGAAGTTGTCTACATCTGAGAAGAAAAAAGAGAAAGAACCAACTGAAGCCAAGCCATCTAACGTGAGAACCTATCCAAATGGATTGGTTATAGAGGACATATCTATGGGCAAACCAGATGGCAAAAGAGCTGATCTTGGAAAGAAGGTTACACATTACATACTGATGTTTTGATTATTGAATTTGACATAACTTACCAATGTGTAATTTTGTTTGACCTATTTTATAATCCAGTTTCTTCTGATAGGAAATCCTTGTTTGATATTCAGGTCAGTGTTAGATATACCGGCAAGCTACAAAAAGATGGGAAAATATTTGACTCGTGTATTGGAAAAGCACCCTTTAAGTTTCGACTTGGTATGTAATTATATACTGTGTTGATCATTGCATTTTTAGTTATTTTTGTTTTCAAACACGCCTTTATCTATATTTATCGTTTGCAGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCGTCAATGGTAATATACTAACATCCTAGTAATAACGTAATAAGATTTAATGCAACGTTATGTTATTCTTATTGCTCACTGTATTTATCTTTTATTTTCTTCAGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGGTATGAAATTGTCCAATATGTCTTTGGTGTGATTTGATATATTAATTTAGTCAATGATTTGTCCCGTGTTAGATGCCATATTCTTTGTTAAATGGGATGACTTTGATTGGTTTAATCTCATGTTATGTTCGTTGTTATGCAGATATGGTGACAAACGTGTTGGGAGTATACCACAAAATTCATGGCTTATATTTGATGTTGAGTTGGTTGGCGTTGAAGGCCGCTGA

Protein sequence

>MS.gene21926.t1

GLKUNLAIRFRIVLTMWKESFTSLRLLUALVHRRRKAFFSALLDAKIQFFCVPCCQTRLRRALUILSLVRMTWWHSRSSVPEASIFLVILCQMTTTREMTMNMIHWERTWELGQRSHLNLIVKMDMMITFLTIAIWKCTHLRQSGVVESUSRKYPTTISLKMEIIQQSNRRKRNKQLTUKRNPAKVLSFQLSLEVTISLSWKVKMKMVSRFPLQTKLNLSLRRLKQKQKENKLKKKLGNPRRRQKMLMSLLAUNEKFKLSMRMSSCKMGKRRRRKTSUKIMVRRKVLMURRLMLLCQMKSLRRLKLQPTRTMSLMQRMEMMGNYPMMKSSLRRKTRRKRRKRPKRLKEKLLRMKLLQLLKIRSCLHLRRKKRKNQLKPSHLTUEPIQMDWLURTYLWANQMAKELILERRSVLDIPASYKKMGKYLTRVLEKHPLSFDLVUDKSSRGGMLASMGUGLGTKEDLQFHHLWDMVTNVLGVYHKIHGLYLMLSWLALKAA