Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35375.t1 | XP_013464926.1 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.40E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35375.t1 | I3SET6 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.8e-83 | 318.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35375 | 0.853725 | 1.98E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene35375 | 0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene35375 | 0.828953 | 6.75E-55 | -1.69E-46 |
| MS.gene049227 | MS.gene35375 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene35375 | 0.829773 | 4.27E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene35375 | 0.829749 | 4.32E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene35375 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene35375 | 0.814225 | 1.72E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene35375 | 0.809424 | 1.91E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene35375 | 0.845338 | 4.32E-59 | -1.69E-46 |
| MS.gene049807 | MS.gene35375 | 0.814139 | 1.79E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene35375 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene35375 | 0.807656 | 4.54E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene35375 | 0.834917 | 2.27E-56 | -1.69E-46 |
| MS.gene050026 | MS.gene35375 | 0.810433 | 1.16E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene35375 | 0.832586 | 8.69E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene35375 | 0.803423 | 3.51E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene35375 | 0.807582 | 4.71E-50 | -1.69E-46 |
| MS.gene050657 | MS.gene35375 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene35375 | 0.830814 | 2.38E-55 | -1.69E-46 |
| MS.gene050808 | MS.gene35375 | 0.807573 | 4.73E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene35375 | 0.82423 | 9.03E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene35375 | 0.840799 | 6.99E-58 | -1.69E-46 |
| MS.gene051247 | MS.gene35375 | 0.827119 | 1.87E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene35375 | 0.844066 | 9.52E-59 | -1.69E-46 |
| MS.gene05157 | MS.gene35375 | 0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene051664 | MS.gene35375 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene35375 | 0.801855 | 7.40E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene35375 | 0.86086 | 1.54E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene35375 | 0.869752 | 2.45E-66 | -1.69E-46 |
| MS.gene051744 | MS.gene35375 | 0.817195 | 3.74E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene35375 | 0.816887 | 4.39E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene35375 | 0.803976 | 2.70E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene35375 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene35375 | -0.802675 | 5.01E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene35375 | 0.854416 | 1.25E-61 | -1.69E-46 |
| MS.gene052516 | MS.gene35375 | 0.864215 | 1.43E-64 | -1.69E-46 |
| MS.gene052519 | MS.gene35375 | 0.828999 | 6.58E-55 | -1.69E-46 |
| MS.gene052534 | MS.gene35375 | 0.801782 | 7.66E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene35375 | 0.822195 | 2.70E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene35375 | 0.828007 | 1.14E-54 | -1.69E-46 |
| MS.gene052628 | MS.gene35375 | 0.814563 | 1.45E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene35375 | 0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene35375 | 0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene35375 | 0.800181 | 1.63E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene35375 | 0.81623 | 6.15E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene35375 | 0.840217 | 9.93E-58 | -1.69E-46 |
| MS.gene053164 | MS.gene35375 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene35375 | 0.841034 | 6.07E-58 | -1.69E-46 |
| MS.gene053581 | MS.gene35375 | 0.831194 | 1.92E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene35375 | 0.807593 | 4.68E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene35375 | 0.820522 | 6.56E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene35375 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene35375 | 0.835508 | 1.61E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene35375 | 0.83558 | 1.55E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene35375 | 0.846423 | 2.19E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene35375 | 0.844081 | 9.43E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene35375 | 0.846574 | 1.99E-59 | -1.69E-46 |
| MS.gene054801 | MS.gene35375 | 0.820137 | 8.04E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene35375 | 0.832952 | 7.05E-56 | -1.69E-46 |
| MS.gene055103 | MS.gene35375 | 0.815758 | 7.85E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene35375 | 0.830128 | 3.50E-55 | -1.69E-46 |
| MS.gene055228 | MS.gene35375 | 0.821187 | 4.61E-53 | -1.69E-46 |
| MS.gene055464 | MS.gene35375 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene35375 | 0.857175 | 1.95E-62 | -1.69E-46 |
| MS.gene055466 | MS.gene35375 | 0.858649 | 7.13E-63 | -1.69E-46 |
| MS.gene055468 | MS.gene35375 | 0.857526 | 1.54E-62 | -1.69E-46 |
| MS.gene055469 | MS.gene35375 | 0.818909 | 1.53E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene35375 | 0.812568 | 3.97E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene35375 | 0.81654 | 5.25E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene35375 | -0.820993 | 5.11E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene35375 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene35375 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene35375 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene055926 | MS.gene35375 | 0.828156 | 1.05E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene35375 | -0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene35375 | 0.825646 | 4.18E-54 | -1.69E-46 |
| MS.gene056082 | MS.gene35375 | 0.802893 | 4.52E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene35375 | 0.855442 | 6.29E-62 | -1.69E-46 |
| MS.gene056215 | MS.gene35375 | 0.831308 | 1.80E-55 | -1.69E-46 |
| MS.gene056252 | MS.gene35375 | 0.824009 | 1.02E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene35375 | 0.852802 | 3.63E-61 | -1.69E-46 |
| MS.gene056366 | MS.gene35375 | 0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene35375 | 0.833431 | 5.36E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene35375 | 0.849378 | 3.36E-60 | -1.69E-46 |
| MS.gene05690 | MS.gene35375 | 0.849447 | 3.22E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene35375 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene057132 | MS.gene35375 | 0.815955 | 7.09E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene35375 | 0.808751 | 2.66E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene35375 | 0.852025 | 6.05E-61 | -1.69E-46 |
| MS.gene057915 | MS.gene35375 | 0.800219 | 1.60E-48 | -1.69E-46 |
| MS.gene057921 | MS.gene35375 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene35375 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene35375 | 0.848773 | 4.95E-60 | -1.69E-46 |
| MS.gene058330 | MS.gene35375 | 0.800928 | 1.14E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene35375 | 0.850627 | 1.50E-60 | -1.69E-46 |
| MS.gene058360 | MS.gene35375 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene35375 | 0.82765 | 1.39E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene35375 | 0.838128 | 3.46E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene35375 | 0.828045 | 1.12E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene35375 | 0.841518 | 4.53E-58 | -1.69E-46 |
| MS.gene05894 | MS.gene35375 | 0.828397 | 9.20E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene35375 | 0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene35375 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene35375 | 0.813273 | 2.78E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene35375 | 0.832609 | 8.57E-56 | -1.69E-46 |
| MS.gene059272 | MS.gene35375 | 0.828463 | 8.87E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene35375 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene35375 | 0.855787 | 4.99E-62 | -1.69E-46 |
| MS.gene059842 | MS.gene35375 | 0.83783 | 4.12E-57 | -1.69E-46 |
| MS.gene060310 | MS.gene35375 | 0.810539 | 1.10E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene35375 | 0.800025 | 1.75E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene35375 | 0.807755 | 4.33E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene35375 | 0.813427 | 2.57E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene35375 | 0.802116 | 6.54E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene35375 | 0.808985 | 2.37E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene35375 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene35375 | 0.807373 | 5.22E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene35375 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene35375 | 0.84758 | 1.06E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35375.t1 | MTR_2g085025 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.74e-123 | 345 |
| MS.gene35375.t1 | MTR_7g104020 | 67.742 | 155 | 48 | 1 | 20 | 174 | 14 | 166 | 1.10e-61 | 188 |
| MS.gene35375.t1 | MTR_7g104020 | 66.456 | 158 | 48 | 2 | 20 | 174 | 14 | 169 | 1.27e-59 | 183 |
| MS.gene35375.t1 | MTR_1g492930 | 56.329 | 158 | 68 | 1 | 17 | 173 | 1 | 158 | 3.93e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35375.t1 | AT2G27740 | 59.649 | 171 | 68 | 1 | 1 | 171 | 1 | 170 | 4.65e-68 | 205 |
| MS.gene35375.t1 | AT2G36410 | 67.647 | 136 | 44 | 0 | 38 | 173 | 57 | 192 | 2.01e-61 | 189 |
| MS.gene35375.t1 | AT3G52920 | 68.889 | 135 | 42 | 0 | 38 | 172 | 28 | 162 | 3.93e-61 | 187 |
| MS.gene35375.t1 | AT3G09980 | 70.139 | 144 | 43 | 0 | 31 | 174 | 35 | 178 | 9.03e-60 | 184 |
| MS.gene35375.t1 | AT2G36410 | 66.187 | 139 | 44 | 1 | 38 | 173 | 57 | 195 | 2.42e-59 | 183 |
| MS.gene35375.t1 | AT3G52920 | 67.391 | 138 | 42 | 1 | 38 | 172 | 28 | 165 | 6.10e-59 | 182 |
| MS.gene35375.t1 | AT5G03660 | 66.418 | 134 | 45 | 0 | 38 | 171 | 36 | 169 | 2.16e-49 | 157 |
| MS.gene35375.t1 | AT3G52900 | 51.974 | 152 | 73 | 0 | 23 | 174 | 13 | 164 | 1.47e-48 | 155 |
| MS.gene35375.t1 | AT2G36355 | 51.299 | 154 | 69 | 2 | 22 | 173 | 5 | 154 | 1.67e-44 | 144 |
| MS.gene35375.t1 | AT2G27740 | 53.659 | 123 | 56 | 1 | 1 | 123 | 1 | 122 | 1.12e-41 | 136 |
| MS.gene35375.t1 | AT5G03660 | 63.793 | 116 | 42 | 0 | 38 | 153 | 36 | 151 | 8.52e-40 | 132 |
| MS.gene35375.t1 | AT2G36410 | 66.279 | 86 | 29 | 0 | 38 | 123 | 57 | 142 | 3.19e-35 | 120 |
| MS.gene35375.t1 | AT5G03660 | 53.731 | 134 | 40 | 1 | 38 | 171 | 36 | 147 | 9.69e-32 | 112 |
| MS.gene35375.t1 | AT2G36355 | 62.651 | 83 | 31 | 0 | 91 | 173 | 1 | 83 | 1.15e-30 | 107 |
| MS.gene35375.t1 | AT2G36355 | 61.628 | 86 | 33 | 0 | 88 | 173 | 27 | 112 | 1.43e-30 | 107 |
| MS.gene35375.t1 | AT2G36355 | 44.144 | 111 | 55 | 3 | 22 | 130 | 5 | 110 | 3.07e-22 | 87.0 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTAACCTCCACTAATT+TGG | 0.202427 | 2.1:-16423115 | None:intergenic |
| AGAAATTGAGAGAAGAAAAT+TGG | 0.229998 | 2.1:+16421754 | MS.gene35375:CDS |
| ATTGCAACATCCTTCCTCTT+TGG | 0.283049 | 2.1:-16422425 | None:intergenic |
| TTTCATCTCTTCTTGGACTC+TGG | 0.297684 | 2.1:-16421679 | None:intergenic |
| GGGTCAAACCTGCCAGAAAA+AGG | 0.317850 | 2.1:+16422493 | MS.gene35375:CDS |
| GTGCAACATGTGAAGAATTC+AGG | 0.351410 | 2.1:+16421641 | MS.gene35375:CDS |
| TCTAGCAATGTTTAGAGAAA+AGG | 0.359449 | 2.1:+16421727 | MS.gene35375:CDS |
| TTCTGGCAGGTTTGACCCAA+TGG | 0.366095 | 2.1:-16422488 | None:intergenic |
| AAAATTGGAGGTTAGAGATA+AGG | 0.419428 | 2.1:+16421769 | MS.gene35375:CDS |
| GAGTCCAAGAAGAGATGAAA+AGG | 0.433573 | 2.1:+16421682 | MS.gene35375:CDS |
| TAACAAAGAGTTAAAGCCAT+TGG | 0.438266 | 2.1:+16422472 | MS.gene35375:CDS |
| AACAAAGAGTTAAAGCCATT+GGG | 0.451012 | 2.1:+16422473 | MS.gene35375:CDS |
| AGAAATTGCATAGGAGATTG+AGG | 0.462032 | 2.1:+16422391 | MS.gene35375:intron |
| GAGGATAAGGATGAAGAAGC+TGG | 0.468797 | 2.1:+16423265 | MS.gene35375:CDS |
| TCAACTTGTTACCAAATTAG+TGG | 0.474598 | 2.1:+16423104 | MS.gene35375:CDS |
| GAAATTGCATAGGAGATTGA+GGG | 0.490039 | 2.1:+16422392 | MS.gene35375:intron |
| GATAAGGTTCATGCTCATCT+TGG | 0.506717 | 2.1:+16421785 | MS.gene35375:CDS |
| TCATCTTGGTCGAGTCGAAA+AGG | 0.517837 | 2.1:+16421799 | MS.gene35375:CDS |
| TGACTGAAAGTGAGAGGATA+AGG | 0.518680 | 2.1:+16423252 | MS.gene35375:CDS |
| AAGAAGAGATGAAAAGGAAG+AGG | 0.527146 | 2.1:+16421688 | MS.gene35375:CDS |
| AATTGAGAGAAGAAAATTGG+AGG | 0.531288 | 2.1:+16421757 | MS.gene35375:CDS |
| CGAAAAGGAAACAAAGCGAT+TGG | 0.535815 | 2.1:+16421814 | MS.gene35375:CDS |
| AGAATACAATGAAGCTCTTG+AGG | 0.569694 | 2.1:+16423053 | MS.gene35375:CDS |
| TTTCACAGATCCAAAGAGGA+AGG | 0.618763 | 2.1:+16422415 | MS.gene35375:CDS |
| AGGGTTTCACAGATCCAAAG+AGG | 0.622777 | 2.1:+16422411 | MS.gene35375:CDS |
| AGCTTGTGACTGAAAGTGAG+AGG | 0.623994 | 2.1:+16423246 | MS.gene35375:intron |
| ACTTGTTACCAAATTAGTGG+AGG | 0.627774 | 2.1:+16423107 | MS.gene35375:CDS |
| GATAAGGATGAAGAAGCTGG+AGG | 0.694341 | 2.1:+16423268 | MS.gene35375:CDS |
| AGTTAGAAAGAAGATAGACA+TGG | 0.715757 | 2.1:+16422448 | MS.gene35375:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAAAACAATGTA+CGG | - | chr2.1:16422948-16422967 | None:intergenic | 10.0% |
| !! | ATATGTTTATTTAGTTGTTT+AGG | + | chr2.1:16422734-16422753 | MS.gene35375:intron | 15.0% |
| !! | CAAACAAAGATTATTTATAA+TGG | - | chr2.1:16422371-16422390 | None:intergenic | 15.0% |
| !! | GAAATTAAAGCAAATAATTA+AGG | - | chr2.1:16422670-16422689 | None:intergenic | 15.0% |
| !! | TTATAATATCTTTACAACAT+AGG | + | chr2.1:16422563-16422582 | MS.gene35375:intron | 15.0% |
| !! | TTTAATATTGTAGAAAATCA+CGG | + | chr2.1:16422054-16422073 | MS.gene35375:intron | 15.0% |
| !!! | AATTATTTGCTTTAATTTCT+TGG | + | chr2.1:16422671-16422690 | MS.gene35375:intron | 15.0% |
| !!! | TTGTGAAACTATATATTTTT+GGG | + | chr2.1:16423018-16423037 | MS.gene35375:intron | 15.0% |
| !! | AAAAAAGAAATATGTTAGCT+AGG | - | chr2.1:16423191-16423210 | None:intergenic | 20.0% |
| !! | ATTAAAGCAAATAATTAAGG+TGG | - | chr2.1:16422667-16422686 | None:intergenic | 20.0% |
| !!! | CTTGTGAAACTATATATTTT+TGG | + | chr2.1:16423017-16423036 | MS.gene35375:intron | 20.0% |
| !!! | CTTTTGATGACATAATATAT+GGG | - | chr2.1:16422698-16422717 | None:intergenic | 20.0% |
| !!! | TGTGAAACTATATATTTTTG+GGG | + | chr2.1:16423019-16423038 | MS.gene35375:intron | 20.0% |
| !!! | TTCATTTGTTTGGTTTTTAT+TGG | + | chr2.1:16421961-16421980 | MS.gene35375:intron | 20.0% |
| !!! | TTGTTTGTTTGGTTTTTTAT+TGG | + | chr2.1:16421904-16421923 | MS.gene35375:intron | 20.0% |
| ! | ACAATATAACGTTGAAATCA+CGG | + | chr2.1:16422127-16422146 | MS.gene35375:intron | 25.0% |
| ! | AGAAATTGAGAGAAGAAAAT+TGG | + | chr2.1:16421754-16421773 | MS.gene35375:CDS | 25.0% |
| ! | ATATCAAAAGCAAAACACAT+TGG | - | chr2.1:16422614-16422633 | None:intergenic | 25.0% |
| ! | ATGATGTTTCATTGTTTGTT+TGG | + | chr2.1:16421893-16421912 | MS.gene35375:intron | 25.0% |
| ! | ATTTCAACGTTATATTGTCA+CGG | - | chr2.1:16422125-16422144 | None:intergenic | 25.0% |
| ! | CAATGAGAAAAACAAAGAAA+AGG | + | chr2.1:16423080-16423099 | MS.gene35375:CDS | 25.0% |
| ! | CCATATATTATGTCATCAAA+AGG | + | chr2.1:16422696-16422715 | MS.gene35375:intron | 25.0% |
| ! | TAAAACTAAAGCTTAATTCC+TGG | - | chr2.1:16422191-16422210 | None:intergenic | 25.0% |
| ! | TATATTATGTCATCAAAAGG+AGG | + | chr2.1:16422699-16422718 | MS.gene35375:intron | 25.0% |
| ! | TATCAAAAGCAAAACACATT+GGG | - | chr2.1:16422613-16422632 | None:intergenic | 25.0% |
| ! | TGTGCAAAGTTTCAAAATAA+TGG | + | chr2.1:16422004-16422023 | MS.gene35375:intron | 25.0% |
| ! | TGTTCAAAGTTTCATTTGTT+TGG | + | chr2.1:16421951-16421970 | MS.gene35375:intron | 25.0% |
| ! | TTACATTTGATCTATAGTCA+AGG | + | chr2.1:16422208-16422227 | MS.gene35375:intron | 25.0% |
| !!! | CCTTTTGATGACATAATATA+TGG | - | chr2.1:16422699-16422718 | None:intergenic | 25.0% |
| AAAATTGGAGGTTAGAGATA+AGG | + | chr2.1:16421769-16421788 | MS.gene35375:CDS | 30.0% | |
| AACAAAGAGTTAAAGCCATT+GGG | + | chr2.1:16422473-16422492 | MS.gene35375:CDS | 30.0% | |
| AACAGTTAGTACTAAACAGT+TGG | - | chr2.1:16422528-16422547 | None:intergenic | 30.0% | |
| AAGTTTCAAAATAATGGTCG+CGG | + | chr2.1:16422010-16422029 | MS.gene35375:intron | 30.0% | |
| AATTGAGAGAAGAAAATTGG+AGG | + | chr2.1:16421757-16421776 | MS.gene35375:CDS | 30.0% | |
| AATTTGAATTCCGTCTGTTT+CGG | - | chr2.1:16422871-16422890 | None:intergenic | 30.0% | |
| AGTTAGAAAGAAGATAGACA+TGG | + | chr2.1:16422448-16422467 | MS.gene35375:CDS | 30.0% | |
| CAAATTCAGTGTTTGTTTAC+TGG | - | chr2.1:16421860-16421879 | None:intergenic | 30.0% | |
| CAATATTAAAGATTACTGCG+TGG | - | chr2.1:16422044-16422063 | None:intergenic | 30.0% | |
| TAACAAAGAGTTAAAGCCAT+TGG | + | chr2.1:16422472-16422491 | MS.gene35375:CDS | 30.0% | |
| TCTAGCAATGTTTAGAGAAA+AGG | + | chr2.1:16421727-16421746 | MS.gene35375:CDS | 30.0% | |
| TTAAAAACAATGTACGGAAG+AGG | - | chr2.1:16422942-16422961 | None:intergenic | 30.0% | |
| ! | CTTTGCATTATGTGAACTTT+TGG | + | chr2.1:16423220-16423239 | MS.gene35375:intron | 30.0% |
| ! | CTTTGTTTGAGAAATTGCAT+AGG | + | chr2.1:16422382-16422401 | MS.gene35375:intron | 30.0% |
| ! | TACAACATAGGATTTGTTCA+AGG | + | chr2.1:16422575-16422594 | MS.gene35375:intron | 30.0% |
| ! | TGCTGATCATATGATCTTTT+TGG | - | chr2.1:16421605-16421624 | None:intergenic | 30.0% |
| ! | TGGAAAATCTAACCTTTTTC+TGG | - | chr2.1:16422508-16422527 | None:intergenic | 30.0% |
| !! | TCAACTTGTTACCAAATTAG+TGG | + | chr2.1:16423104-16423123 | MS.gene35375:CDS | 30.0% |
| !!! | CTATATATTTTTGGGGTTAC+AGG | + | chr2.1:16423026-16423045 | MS.gene35375:intron | 30.0% |
| !!! | CTGGTCAAGGTTTTAAAAAA+CGG | - | chr2.1:16422172-16422191 | None:intergenic | 30.0% |
| AAGAAGAGATGAAAAGGAAG+AGG | + | chr2.1:16421688-16421707 | MS.gene35375:CDS | 35.0% | |
| ACTTCTAACCTCCACTAATT+TGG | - | chr2.1:16423118-16423137 | None:intergenic | 35.0% | |
| AGAAATTGCATAGGAGATTG+AGG | + | chr2.1:16422391-16422410 | MS.gene35375:intron | 35.0% | |
| AGAATACAATGAAGCTCTTG+AGG | + | chr2.1:16423053-16423072 | MS.gene35375:CDS | 35.0% | |
| AGACTAAAGTCTAAGCAATG+TGG | - | chr2.1:16422639-16422658 | None:intergenic | 35.0% | |
| CGGAATTCAAATTTCTCAGT+TGG | + | chr2.1:16422878-16422897 | MS.gene35375:intron | 35.0% | |
| GAAATTGCATAGGAGATTGA+GGG | + | chr2.1:16422392-16422411 | MS.gene35375:intron | 35.0% | |
| TAAAGCTTAATTCCTGGTCA+AGG | - | chr2.1:16422185-16422204 | None:intergenic | 35.0% | |
| TTGTCACGGATATCAAATTG+TGG | - | chr2.1:16422111-16422130 | None:intergenic | 35.0% | |
| ! | ACTTGTTACCAAATTAGTGG+AGG | + | chr2.1:16423107-16423126 | MS.gene35375:CDS | 35.0% |
| ! | TCTTCCTTTTCATCTCTTCT+TGG | - | chr2.1:16421689-16421708 | None:intergenic | 35.0% |
| !! | AAATCTAACCTTTTTCTGGC+AGG | - | chr2.1:16422504-16422523 | None:intergenic | 35.0% |
| !! | AACTAGCTTGTTTCAAACAC+TGG | - | chr2.1:16422261-16422280 | None:intergenic | 35.0% |
| !!! | CGTTTTTTAAAACCTTGACC+AGG | + | chr2.1:16422170-16422189 | MS.gene35375:intron | 35.0% |
| ATTGCAACATCCTTCCTCTT+TGG | - | chr2.1:16422428-16422447 | None:intergenic | 40.0% | |
| CGAAAAGGAAACAAAGCGAT+TGG | + | chr2.1:16421814-16421833 | MS.gene35375:CDS | 40.0% | |
| GACTTTGTAACCGAAACAGA+CGG | + | chr2.1:16422858-16422877 | MS.gene35375:intron | 40.0% | |
| GAGTCCAAGAAGAGATGAAA+AGG | + | chr2.1:16421682-16421701 | MS.gene35375:CDS | 40.0% | |
| GATAAGGTTCATGCTCATCT+TGG | + | chr2.1:16421785-16421804 | MS.gene35375:CDS | 40.0% | |
| GTCAATCTCTTACCACCAAA+CGG | - | chr2.1:16422841-16422860 | None:intergenic | 40.0% | |
| GTGCAACATGTGAAGAATTC+AGG | + | chr2.1:16421641-16421660 | MS.gene35375:CDS | 40.0% | |
| TCAAATTGTGGTCGCTATTG+CGG | - | chr2.1:16422099-16422118 | None:intergenic | 40.0% | |
| TGACTGAAAGTGAGAGGATA+AGG | + | chr2.1:16423252-16423271 | MS.gene35375:CDS | 40.0% | |
| TTTCACAGATCCAAAGAGGA+AGG | + | chr2.1:16422415-16422434 | MS.gene35375:CDS | 40.0% | |
| TTTCATCTCTTCTTGGACTC+TGG | - | chr2.1:16421682-16421701 | None:intergenic | 40.0% | |
| ! | AAATAATGGTCGCGGTTTTG+CGG | + | chr2.1:16422018-16422037 | MS.gene35375:intron | 40.0% |
| AGCTTGTGACTGAAAGTGAG+AGG | + | chr2.1:16423246-16423265 | MS.gene35375:intron | 45.0% | |
| AGGGTTTCACAGATCCAAAG+AGG | + | chr2.1:16422411-16422430 | MS.gene35375:CDS | 45.0% | |
| ATCTCTTACCACCAAACGGA+AGG | - | chr2.1:16422837-16422856 | None:intergenic | 45.0% | |
| GAGGATAAGGATGAAGAAGC+TGG | + | chr2.1:16423265-16423284 | MS.gene35375:CDS | 45.0% | |
| GATAAGGATGAAGAAGCTGG+AGG | + | chr2.1:16423268-16423287 | MS.gene35375:CDS | 45.0% | |
| TCATCTTGGTCGAGTCGAAA+AGG | + | chr2.1:16421799-16421818 | MS.gene35375:CDS | 45.0% | |
| TGCTTCTTGTTCCTTCCGTT+TGG | + | chr2.1:16422823-16422842 | MS.gene35375:intron | 45.0% | |
| TTCTTGTTCCTTCCGTTTGG+TGG | + | chr2.1:16422826-16422845 | MS.gene35375:intron | 45.0% | |
| !! | AAATAAAATAAAATAAAATG+TGG | + | chr2.1:16422294-16422313 | MS.gene35375:intron | 5.0% |
| GGGTCAAACCTGCCAGAAAA+AGG | + | chr2.1:16422493-16422512 | MS.gene35375:CDS | 50.0% | |
| TTCTGGCAGGTTTGACCCAA+TGG | - | chr2.1:16422491-16422510 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 16421593 | 16423322 | 16421593 | ID=MS.gene35375 |
| chr2.1 | mRNA | 16421593 | 16423322 | 16421593 | ID=MS.gene35375.t1;Parent=MS.gene35375 |
| chr2.1 | exon | 16421593 | 16421850 | 16421593 | ID=MS.gene35375.t1.exon1;Parent=MS.gene35375.t1 |
| chr2.1 | CDS | 16421593 | 16421850 | 16421593 | ID=cds.MS.gene35375.t1;Parent=MS.gene35375.t1 |
| chr2.1 | exon | 16422404 | 16422514 | 16422404 | ID=MS.gene35375.t1.exon2;Parent=MS.gene35375.t1 |
| chr2.1 | CDS | 16422404 | 16422514 | 16422404 | ID=cds.MS.gene35375.t1;Parent=MS.gene35375.t1 |
| chr2.1 | exon | 16423048 | 16423128 | 16423048 | ID=MS.gene35375.t1.exon3;Parent=MS.gene35375.t1 |
| chr2.1 | CDS | 16423048 | 16423128 | 16423048 | ID=cds.MS.gene35375.t1;Parent=MS.gene35375.t1 |
| chr2.1 | exon | 16423248 | 16423322 | 16423248 | ID=MS.gene35375.t1.exon4;Parent=MS.gene35375.t1 |
| chr2.1 | CDS | 16423248 | 16423322 | 16423248 | ID=cds.MS.gene35375.t1;Parent=MS.gene35375.t1 |
| Gene Sequence |
| Protein sequence |
