AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62624


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62624.t1 MTR_8g106680 98.737 871 11 0 1 871 1 871 0.0 1771
MS.gene62624.t1 MTR_6g080430 65.760 882 266 16 5 870 8 869 0.0 1068
MS.gene62624.t1 MTR_4g125670 27.178 482 212 19 518 867 593 1067 6.52e-29 125
MS.gene62624.t1 MTR_4g125670 26.115 471 287 17 109 538 57 507 2.85e-22 103
MS.gene62624.t1 MTR_2g040970 34.500 200 123 4 99 293 70 266 1.90e-27 120
MS.gene62624.t1 MTR_2g040970 24.893 466 216 16 519 855 704 1164 5.28e-27 119
MS.gene62624.t1 MTR_2g040970 34.500 200 123 4 99 293 70 266 1.99e-27 120
MS.gene62624.t1 MTR_2g040970 24.893 466 216 16 519 855 704 1164 6.52e-27 119
MS.gene62624.t1 MTR_1g015120 24.681 470 260 14 471 871 598 1042 3.32e-26 116
MS.gene62624.t1 MTR_1g015120 31.609 174 90 3 105 275 76 223 7.42e-18 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62624.t1 AT1G42550 54.875 882 326 27 9 869 12 842 0.0 815
MS.gene62624.t1 AT5G20610 30.383 339 209 11 87 413 38 361 4.43e-27 119
MS.gene62624.t1 AT5G20610 33.498 203 126 4 514 709 701 901 1.42e-22 104
MS.gene62624.t1 AT5G26160 31.925 213 126 6 65 272 32 230 1.06e-24 111
MS.gene62624.t1 AT5G26160 25.613 367 227 12 517 851 590 942 9.81e-20 95.5
MS.gene62624.t1 AT5G26160 31.925 213 126 6 65 272 32 230 1.24e-24 111
MS.gene62624.t1 AT5G26160 25.613 367 227 12 517 851 590 942 9.73e-20 95.5
MS.gene62624.t1 AT5G26160 31.925 213 126 6 65 272 32 230 1.24e-24 111
MS.gene62624.t1 AT5G26160 25.613 367 227 12 517 851 590 942 9.73e-20 95.5

Find 226 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACACATCAACAACTAATT+TGG 0.112687 4.2:-661937 MS.gene62624:CDS
TCGTTTCTGCTTGTCATTCT+AGG 0.136217 4.2:+661276 None:intergenic
CTATGTGGTCATCAACTTTC+TGG 0.179146 4.2:+661148 None:intergenic
AGTTGTAAAGGTGGAATTTC+AGG 0.189977 4.2:+660763 None:intergenic
AATATCAGCGTGACTCTTTC+AGG 0.228861 4.2:+660004 None:intergenic
ACATCTGCATTGCTAGCTTT+GGG 0.242611 4.2:+660587 None:intergenic
CTGAGCATTGGGATTGTTCT+TGG 0.248888 4.2:+662220 None:intergenic
TGCAACCGGTTTCTCTTCTA+TGG 0.251241 4.2:+661026 None:intergenic
GAGGAATCATGAACTGGATT+TGG 0.266943 4.2:+661180 None:intergenic
GACATCTGCATTGCTAGCTT+TGG 0.273912 4.2:+660586 None:intergenic
GTTTGACTTGTTTCAGAAAT+TGG 0.274326 4.2:-660524 MS.gene62624:CDS
CACCTCTTTGGTTTCTGTCT+TGG 0.280369 4.2:+661965 None:intergenic
GATGCTCAAGAGCTGGATTT+TGG 0.294691 4.2:-661588 MS.gene62624:CDS
CTTATTCATGCAACACGTTC+TGG 0.320960 4.2:-659920 MS.gene62624:CDS
GGAAAGTGGGAAAGATCTTT+TGG 0.322823 4.2:-660113 MS.gene62624:CDS
CTTGGCTTCCATGAATCCTT+TGG 0.326206 4.2:-660635 MS.gene62624:CDS
ATGCGTGCACTTTCACATAT+TGG 0.332421 4.2:-661876 MS.gene62624:CDS
TGTGTTAACCACCACCTCTT+TGG 0.342541 4.2:+661953 None:intergenic
GTCCCATGCATTCTTATTTG+TGG 0.349501 4.2:+659820 None:intergenic
CTTCTTCTCATGATTGTTGT+TGG 0.355425 4.2:+661650 None:intergenic
AGAAGCTTCTCTGAAGTAAC+TGG 0.355853 4.2:+660250 None:intergenic
TCGGATTCTCCTCCATCTTC+CGG 0.357183 4.2:+660721 None:intergenic
AACACATCAACAACTAATTT+GGG 0.359751 4.2:-661936 MS.gene62624:CDS
AGGCACACTGAAGGATGATT+TGG 0.363853 4.2:+661302 None:intergenic
CTGCTTGTCATTCTAGGACT+AGG 0.364675 4.2:+661282 None:intergenic
GCCTAACTCGTGCACCTTGT+TGG 0.364828 4.2:+661514 None:intergenic
AGAATGAGAAGAAAGGGATT+TGG 0.370371 4.2:-661911 MS.gene62624:CDS
CAAATCATCCATTCCTTGAA+TGG 0.372936 4.2:+661215 None:intergenic
ATGTGGGTGGTTTCAAAGTT+AGG 0.372982 4.2:-659847 MS.gene62624:CDS
TTCTGACCTCGGTAAAGGCT+TGG 0.373813 4.2:-660689 MS.gene62624:CDS
TGAAAGAGTCACGCTGATAT+TGG 0.381885 4.2:-660002 MS.gene62624:CDS
GAAATTCCATCCTCAAGCTT+TGG 0.383944 4.2:+661987 None:intergenic
TGACAAACTACTCAACTTGC+TGG 0.387407 4.2:+661347 None:intergenic
GATACGAGCTTCAAGTTATC+TGG 0.390732 4.2:-661486 MS.gene62624:CDS
CTGCTATTCCACTTGAGGAT+TGG 0.394911 4.2:-660087 MS.gene62624:CDS
CTGGACTTTGAATTCTGCAT+TGG 0.395970 4.2:+661366 None:intergenic
AGGAATCATGAACTGGATTT+GGG 0.397713 4.2:+661181 None:intergenic
TTTCAGAAATTGGCTGGCAT+TGG 0.398106 4.2:-660514 MS.gene62624:CDS
TCTGACCTCGGTAAAGGCTT+GGG 0.399031 4.2:-660688 MS.gene62624:CDS
TTCACAACCTCATCTGCAAC+CGG 0.404254 4.2:+661012 None:intergenic
ACTTCTTCATATCGTCTCAT+TGG 0.404417 4.2:+659962 None:intergenic
AACAAGAGATGGCGGATACT+TGG 0.406870 4.2:-660653 MS.gene62624:CDS
TCTTCAAGAATCTGAGCATT+GGG 0.406979 4.2:+662209 None:intergenic
TGCTGTTGATGCTCAAGAGC+TGG 0.408444 4.2:-661595 MS.gene62624:CDS
ATGCAATGGTTAGTTGCATA+TGG 0.412127 4.2:-659773 MS.gene62624:CDS
AACAACATCCAAAGGATTCA+TGG 0.412903 4.2:+660627 None:intergenic
AGAGGAAGAGACGGAATCAT+TGG 0.413020 4.2:-660869 MS.gene62624:CDS
TGGGAGAGAATGAGAAGAAA+GGG 0.417323 4.2:-661917 MS.gene62624:CDS
CTTTGTTGTAGCTTAAGCTT+TGG 0.419370 4.2:+660056 None:intergenic
GGCTAGTCTTAGTCCGTTCA+TGG 0.419473 4.2:+661791 None:intergenic
CACTTTACAAGCTTGACATC+GGG 0.426837 4.2:+659638 None:intergenic
ATCGAATGGAGCTTCTTCTT+CGG 0.429366 4.2:+660162 None:intergenic
GCAACACGTTCTGGCACAAA+GGG 0.435630 4.2:-659911 MS.gene62624:CDS
ACTGCAACTGCAAGTTCTAA+TGG 0.438234 4.2:-660031 MS.gene62624:CDS
TCCTCCATCTTCCGGAGAAT+CGG 0.440582 4.2:+660729 None:intergenic
ATTGTCATTGTGATCTTCAA+TGG 0.443126 4.2:+662088 None:intergenic
TGGGAAAAGCAGGGAAGAAA+GGG 0.443601 4.2:-659748 MS.gene62624:CDS
TTGGGAAAAGCAGGGAAGAA+AGG 0.444809 4.2:-659749 MS.gene62624:CDS
GGAGAACTTGTTGTGAAACT+TGG 0.445170 4.2:-661450 MS.gene62624:CDS
TGGTTAGTTGCATATGGGTT+GGG 0.448026 4.2:-659767 MS.gene62624:CDS
TAAGACTAGCCGTTTGCGTT+AGG 0.448434 4.2:-661779 MS.gene62624:CDS
ATGTCAAACATTATCAGTTC+AGG 0.453173 4.2:-660319 MS.gene62624:CDS
AAAAGCTCTTGAGTCTATGA+TGG 0.453235 4.2:-660923 MS.gene62624:CDS
TTTCAGATTGTGGAGAAAGA+TGG 0.453818 4.2:-661426 MS.gene62624:CDS
GACTTGTTTCAGAAATTGGC+TGG 0.453957 4.2:-660520 MS.gene62624:CDS
GCCAACAAGGTGCACGAGTT+AGG 0.454298 4.2:-661515 MS.gene62624:CDS
GCATATGGGTTGGGAAAAGC+AGG 0.456357 4.2:-659758 MS.gene62624:CDS
GGCTTCTGCTATTCCACTTG+AGG 0.457095 4.2:-660092 MS.gene62624:CDS
GCTTTGGTCTTGATCGCCAT+GGG 0.457357 4.2:+662003 None:intergenic
AACGAATATCAACAGGACTT+TGG 0.460472 4.2:-660288 MS.gene62624:CDS
TGATCTTCAATGGATGGAAC+AGG 0.463470 4.2:+662098 None:intergenic
AGCCGTTTGCGTTAGGAAGA+AGG 0.466046 4.2:-661772 MS.gene62624:CDS
ATTCCACCTTTACAACTTGA+AGG 0.467961 4.2:-660757 MS.gene62624:CDS
CAGATTGTGGAGAAAGATGG+AGG 0.468329 4.2:-661423 MS.gene62624:CDS
TTCTTCAAGAATCTGAGCAT+TGG 0.469470 4.2:+662208 None:intergenic
TTGTTCTTGGCATCTGCCAT+TGG 0.473010 4.2:+662233 None:intergenic
CTGCACTCAGCTCAAAGAAA+GGG 0.475554 4.2:-660135 MS.gene62624:CDS
GGTAGTTGATAAAGGGATTG+AGG 0.475867 4.2:-661091 MS.gene62624:CDS
AGCTCAAAGAAAGGGGAAAG+TGG 0.476835 4.2:-660127 MS.gene62624:CDS
TTCCTTCTTCCTAACGCAAA+CGG 0.477467 4.2:+661770 None:intergenic
TATCTTTCTGACCTCGGTAA+AGG 0.481608 4.2:-660694 MS.gene62624:CDS
GAAGAAGAGGAATCATGAAC+TGG 0.483448 4.2:+661174 None:intergenic
AGCTTTGGTCTTGATCGCCA+TGG 0.485605 4.2:+662002 None:intergenic
CTTGACATCGGGATTTCTCA+TGG 0.485916 4.2:+659649 None:intergenic
TAATAATTCAATGAAAATAG+AGG 0.486967 4.2:-660887 MS.gene62624:CDS
AGGAGAGAACGAATATCAAC+AGG 0.488196 4.2:-660295 MS.gene62624:CDS
TTGGGAGAGAATGAGAAGAA+AGG 0.488412 4.2:-661918 MS.gene62624:CDS
CTTGTTCCTACCTTGTACGA+CGG 0.489568 4.2:+660390 None:intergenic
TGAAGGGCATGCCGATTCTC+CGG 0.490624 4.2:-660740 MS.gene62624:CDS
AGAAGAAAGGGATTTGGAAG+TGG 0.490924 4.2:-661905 MS.gene62624:CDS
TTATCAACTACCTCAAAATC+CGG 0.493481 4.2:+661102 None:intergenic
GAAGGTGGCAGTGCCATTCA+AGG 0.493689 4.2:-661228 MS.gene62624:CDS
GTCTCATTGGATCCCGCAGT+TGG 0.493983 4.2:+659975 None:intergenic
AGAAACTATGCGGGCAGCGC+TGG 0.502243 4.2:+660354 None:intergenic
GAATCCTTTGGATGTTGTTG+TGG 0.502472 4.2:-660623 MS.gene62624:CDS
TCATGCGATGCCAACACAAA+AGG 0.503833 4.2:+660559 None:intergenic
CTGTTTGTTCTCTGTTGAAG+TGG 0.506284 4.2:-661838 MS.gene62624:CDS
CAAAGGGACAAGACCTGCTA+TGG 0.506660 4.2:-659712 MS.gene62624:CDS
CATCTGCATTGCTAGCTTTG+GGG 0.507161 4.2:+660588 None:intergenic
ATGAGACGATATGAAGAAGT+TGG 0.507288 4.2:-659959 MS.gene62624:CDS
GGGAAGAAGACATTGACAAA+GGG 0.509402 4.2:-659728 MS.gene62624:CDS
AGGGATTGAGGTTCAAGAGA+AGG 0.509466 4.2:-661079 MS.gene62624:CDS
CTTAGTCCGTTCATGGAAGA+AGG 0.510345 4.2:+661798 None:intergenic
TAAAACCATAGAAGAGAAAC+CGG 0.511009 4.2:-661031 MS.gene62624:CDS
AAACAAGTCAAACCCACTTA+CGG 0.513728 4.2:+660534 None:intergenic
GAGTTGTTCGTGGCAAAACA+AGG 0.514347 4.2:+662120 None:intergenic
GTCGCATGTCCTTGTCCCCA+TGG 0.514497 4.2:-662019 MS.gene62624:CDS
TCTGCACTCAGCTCAAAGAA+AGG 0.515153 4.2:-660136 MS.gene62624:CDS
TTTCCCATCAGTTCATCTAT+CGG 0.516995 4.2:+660451 None:intergenic
TTTCAATGCCTCAACTGCCA+TGG 0.518234 4.2:+660201 None:intergenic
GAGTATTTCGTCACGGATCG+TGG 0.521965 4.2:-659690 MS.gene62624:CDS
CAGTTCATCTATCGGCATCA+AGG 0.524088 4.2:+660459 None:intergenic
AGCTGTTCTTCGAGCTGTGG+TGG 0.524261 4.2:+662145 None:intergenic
TTCCACCTTTACAACTTGAA+GGG 0.526364 4.2:-660756 MS.gene62624:CDS
CAAGAGAAGGAAGAAGATGA+AGG 0.527000 4.2:-661066 MS.gene62624:CDS
GAAGGAAGAAGATGAAGGTG+AGG 0.527620 4.2:-661061 MS.gene62624:CDS
CAGATGAAGAAACTGTGACT+AGG 0.532322 4.2:-660843 MS.gene62624:CDS
AGATGAAGAAACTGTGACTA+GGG 0.533523 4.2:-660842 MS.gene62624:CDS
AATGCAGAAGATTGAATCCA+TGG 0.535381 4.2:-660218 MS.gene62624:CDS
CATGCCGATTCTCCGGAAGA+TGG 0.536713 4.2:-660733 MS.gene62624:CDS
CACGGATCGTGGCTGATATG+TGG 0.539317 4.2:-659679 MS.gene62624:CDS
GATTGAATCCATGGCAGTTG+AGG 0.540044 4.2:-660209 MS.gene62624:CDS
AGAGAAACCGGTTGCAGATG+AGG 0.540398 4.2:-661019 MS.gene62624:CDS
GCATCGCATGAATCCGTAAG+TGG 0.540823 4.2:-660547 MS.gene62624:CDS
ACTGCTTTCACTGTAAACTT+CGG 0.543612 4.2:+662058 None:intergenic
GTTCCACAAATAAGAATGCA+TGG 0.544139 4.2:-659823 MS.gene62624:CDS
ATCGCGTCAGCCGTCGTACA+AGG 0.544732 4.2:-660400 MS.gene62624:CDS
GGATGTGTGTGATTTGTAGA+GGG 0.546560 4.2:+662166 None:intergenic
GACCTTCCTTCTTCCATGAA+CGG 0.548612 4.2:-661804 MS.gene62624:CDS
TGCAATGGTTAGTTGCATAT+GGG 0.549444 4.2:-659772 MS.gene62624:CDS
GAGTCTATGATGGGAGATGA+TGG 0.552409 4.2:-660913 MS.gene62624:CDS
GATATTGGTTGTCCAACTGC+GGG 0.552803 4.2:-659987 MS.gene62624:CDS
CGGTAAAGGCTTGGGTTGTG+TGG 0.554157 4.2:-660680 MS.gene62624:CDS
TCTTGATCGCCATGGGGACA+AGG 0.555366 4.2:+662010 None:intergenic
TGGCAGTGCCATTCAAGGAA+TGG 0.555467 4.2:-661223 MS.gene62624:CDS
TTTCAATGCAGAAACTATGC+GGG 0.556470 4.2:+660345 None:intergenic
GGGCTAAGGAGGAGGAGAAG+AGG 0.559729 4.2:-659889 MS.gene62624:CDS
GTGACGAAATACTCCATAGC+AGG 0.562189 4.2:+659699 None:intergenic
CTAGCCACAACAACATCCAA+AGG 0.562371 4.2:+660619 None:intergenic
GCATGCCCTTCAAGTTGTAA+AGG 0.562567 4.2:+660751 None:intergenic
TGGGGACAAGGACATGCGAC+GGG 0.563051 4.2:+662022 None:intergenic
TCACTTTACAAGCTTGACAT+CGG 0.564256 4.2:+659637 None:intergenic
TGGATGTGTGTGATTTGTAG+AGG 0.564843 4.2:+662165 None:intergenic
CAAAGTAACAAGCATGCATG+TGG 0.566320 4.2:-659864 MS.gene62624:CDS
GACAGAAACCAAAGAGGTGG+TGG 0.570453 4.2:-661961 MS.gene62624:CDS
TCATTGTGATCTTCAATGGA+TGG 0.574269 4.2:+662092 None:intergenic
TCAAGACCAAAGCTTGAGGA+TGG 0.574280 4.2:-661993 MS.gene62624:CDS
AAGGTGCACGAGTTAGGCAG+TGG 0.574926 4.2:-661509 MS.gene62624:CDS
GCTCAAAGAAAGGGGAAAGT+GGG 0.576184 4.2:-660126 MS.gene62624:CDS
AAAGCTCTTGAGTCTATGAT+GGG 0.578864 4.2:-660922 MS.gene62624:CDS
TGCAACACGTTCTGGCACAA+AGG 0.579645 4.2:-659912 MS.gene62624:CDS
AACTTTCTGGACAGAAGAAG+AGG 0.581837 4.2:+661161 None:intergenic
AATGAAAATAGAGGAAGAGA+CGG 0.582509 4.2:-660878 MS.gene62624:CDS
GGAAGCTGTTCTTCGAGCTG+TGG 0.583506 4.2:+662142 None:intergenic
ATGGTTAGTTGCATATGGGT+TGG 0.588597 4.2:-659768 MS.gene62624:CDS
GGAGTTTCTTCAGATGCTTG+AGG 0.589691 4.2:-660821 MS.gene62624:CDS
AATCCTCCACTTGTTCTATG+TGG 0.592843 4.2:+661133 None:intergenic
GATGGAACAGGAGTTGTTCG+TGG 0.594167 4.2:+662110 None:intergenic
TGATGACCACATAGAACAAG+TGG 0.594643 4.2:-661139 MS.gene62624:CDS
CGTTAGGAAGAAGGAAACAA+AGG 0.595602 4.2:-661763 MS.gene62624:CDS
AGACGATATGAAGAAGTTGG+AGG 0.596461 4.2:-659956 MS.gene62624:CDS
AAGTTATCTGGAAAGGCGAA+AGG 0.598430 4.2:-661474 MS.gene62624:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.599945 4.2:-660664 MS.gene62624:CDS
TGCCCTTCAAGTTGTAAAGG+TGG 0.600821 4.2:+660754 None:intergenic
TGCACTCAGCTCAAAGAAAG+GGG 0.602008 4.2:-660134 MS.gene62624:CDS
AAAGACTAACTGCAATGCAA+TGG 0.603303 4.2:-659787 MS.gene62624:CDS
GTCCGTTCATGGAAGAAGGA+AGG 0.603868 4.2:+661802 None:intergenic
TCCGTTGAGAAAAGCCAACA+AGG 0.603895 4.2:-661528 MS.gene62624:CDS
GTTTCTTCAGATGCTTGAGG+AGG 0.606539 4.2:-660818 MS.gene62624:CDS
TGATATTGGTTGTCCAACTG+CGG 0.606602 4.2:-659988 MS.gene62624:CDS
AGATAAATTGAAAAGGGACG+TGG 0.607650 4.2:+661621 None:intergenic
GATGCCGATAGATGAACTGA+TGG 0.613209 4.2:-660455 MS.gene62624:CDS
TCTCTAATCCAATCCTCAAG+TGG 0.613755 4.2:+660079 None:intergenic
AGGGAAGAAGACATTGACAA+AGG 0.614678 4.2:-659729 MS.gene62624:CDS
TCAGATTCTTGAAGAACTAG+AGG 0.615369 4.2:-662201 MS.gene62624:CDS
TGCTATGGAGTATTTCGTCA+CGG 0.616016 4.2:-659697 MS.gene62624:CDS
GAGGTCAGAAAGATATACTT+CGG 0.619421 4.2:+660702 None:intergenic
CAAAGCTTAAGCTACAACAA+AGG 0.620042 4.2:-660055 MS.gene62624:CDS
CGTCAGCCGTCGTACAAGGT+AGG 0.620909 4.2:-660396 MS.gene62624:CDS
GGTTGCAGATGAGGTTGTGA+AGG 0.621662 4.2:-661010 MS.gene62624:CDS
CTGAGTGCAGAAACATCGAA+TGG 0.625191 4.2:+660148 None:intergenic
TGTTGTTGGTATAATAAGCA+TGG 0.627355 4.2:+661664 None:intergenic
GAAGTATATCTTTCTGACCT+CGG 0.627389 4.2:-660700 MS.gene62624:CDS
GTAAAGGTGGAATTTCAGGT+TGG 0.628299 4.2:+660767 None:intergenic
CATCGCATGAATCCGTAAGT+GGG 0.628618 4.2:-660546 MS.gene62624:CDS
ATATGTGAAAGTGCACGCAT+CGG 0.629019 4.2:+661879 None:intergenic
TTTGGATTGTTTGCGTGCGA+AGG 0.630319 4.2:+661320 None:intergenic
GGCATTGGTCTTGATGAACT+CGG 0.632439 4.2:-660499 MS.gene62624:CDS
AAGGACATGCGACGGGATCG+AGG 0.632471 4.2:+662029 None:intergenic
ATTGAAAATTCAAGCTGACG+TGG 0.632872 4.2:-660185 MS.gene62624:CDS
ACTCCTTCACATTCACATGA+AGG 0.633586 4.2:-661246 MS.gene62624:CDS
TTCCACAAATAAGAATGCAT+GGG 0.633963 4.2:-659822 MS.gene62624:CDS
GCGATCAAGACCAAAGCTTG+AGG 0.634062 4.2:-661997 MS.gene62624:CDS
ATGCCATCACGTGTTTCACA+AGG 0.634809 4.2:-661723 MS.gene62624:CDS
GAGCTTCAAGTTATCTGGAA+AGG 0.635002 4.2:-661481 MS.gene62624:CDS
GCCGATTCTCCGGAAGATGG+AGG 0.639156 4.2:-660730 MS.gene62624:CDS
ATGGGGACAAGGACATGCGA+CGG 0.641046 4.2:+662021 None:intergenic
CGTCGTACAAGGTAGGAACA+AGG 0.643621 4.2:-660389 MS.gene62624:CDS
AAAGTAACAAGCATGCATGT+GGG 0.649857 4.2:-659863 MS.gene62624:CDS
CAAGACAGAAACCAAAGAGG+TGG 0.653529 4.2:-661964 MS.gene62624:CDS
TCTAGGACTAGGCACACTGA+AGG 0.657190 4.2:+661293 None:intergenic
GAGGAGGATCAAGACAGCAA+AGG 0.657946 4.2:-660802 MS.gene62624:CDS
AACACGTTCTGGCACAAAGG+GGG 0.659062 4.2:-659909 MS.gene62624:CDS
CAAACATTATCAGTTCAGGA+AGG 0.660678 4.2:-660315 MS.gene62624:CDS
CAAGCTCAGACAATCTAGCA+TGG 0.661428 4.2:+660965 None:intergenic
AGGAAGAAGGAAACAAAGGA+TGG 0.665822 4.2:-661759 MS.gene62624:CDS
GTAACAAGCATGCATGTGGG+TGG 0.668323 4.2:-659860 MS.gene62624:CDS
GCTCCTTGTGAAACACGTGA+TGG 0.669131 4.2:+661720 None:intergenic
ATGCCGATAGATGAACTGAT+GGG 0.669377 4.2:-660454 MS.gene62624:CDS
GCATGAATAAGCACCATCGT+AGG 0.672184 4.2:+659932 None:intergenic
TTATCTGGAAAGGCGAAAGG+AGG 0.674087 4.2:-661471 MS.gene62624:CDS
CCTTCACATTCACATGAAGG+TGG 0.678609 4.2:-661243 MS.gene62624:CDS
AGGTGCACGAGTTAGGCAGT+GGG 0.679141 4.2:-661508 MS.gene62624:CDS
GTACAAGGTAGGAACAAGGA+AGG 0.681269 4.2:-660385 MS.gene62624:CDS
TTCCAAGACAGAAACCAAAG+AGG 0.681865 4.2:-661967 MS.gene62624:CDS
AGTTGTTCGTGGCAAAACAA+GGG 0.685686 4.2:+662121 None:intergenic
TTCATCTATCGGCATCAAGG+AGG 0.688397 4.2:+660462 None:intergenic
TGACCACATAGAACAAGTGG+AGG 0.689391 4.2:-661136 MS.gene62624:CDS
GTGGTTCAAACAAGAGATGG+CGG 0.692152 4.2:-660661 MS.gene62624:CDS
CCACCTTCATGTGAATGTGA+AGG 0.696835 4.2:+661243 None:intergenic
AGAAGTTGGAGGACCTACGA+TGG 0.697633 4.2:-659945 MS.gene62624:CDS
TGACAAGCAGAAACGACGCG+TGG 0.698961 4.2:-661269 MS.gene62624:CDS
CTTTGGTCTTGATCGCCATG+GGG 0.700721 4.2:+662004 None:intergenic
CAACACGTTCTGGCACAAAG+GGG 0.715647 4.2:-659910 MS.gene62624:CDS
CATATGGGTTGGGAAAAGCA+GGG 0.739417 4.2:-659757 MS.gene62624:CDS
CACAACCCAAGCCTTTACCG+AGG 0.745080 4.2:+660683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTCAATGAAAATAG+AGG - chr4.2:660980-660999 MS.gene62624:CDS 15.0%
!! AGCAAAAAGATAAATTGAAA+AGG + chr4.2:660256-660275 None:intergenic 20.0%
!! GCAAAAAGATAAATTGAAAA+GGG + chr4.2:660255-660274 None:intergenic 20.0%
! AACACATCAACAACTAATTT+GGG - chr4.2:659931-659950 MS.gene62624:CDS 25.0%
! TAACACATCAACAACTAATT+TGG - chr4.2:659930-659949 MS.gene62624:CDS 25.0%
!!! ATTTTGAGGTAGTTGATAAA+GGG - chr4.2:660769-660788 MS.gene62624:CDS 25.0%
AATGAAAATAGAGGAAGAGA+CGG - chr4.2:660989-661008 MS.gene62624:CDS 30.0%
ATGTCAAACATTATCAGTTC+AGG - chr4.2:661548-661567 MS.gene62624:CDS 30.0%
ATTGTCATTGTGATCTTCAA+TGG + chr4.2:659782-659801 None:intergenic 30.0%
TAAAACCATAGAAGAGAAAC+CGG - chr4.2:660836-660855 MS.gene62624:CDS 30.0%
TGTTGTTGGTATAATAAGCA+TGG + chr4.2:660206-660225 None:intergenic 30.0%
TTATCAACTACCTCAAAATC+CGG + chr4.2:660768-660787 None:intergenic 30.0%
TTCCACAAATAAGAATGCAT+GGG - chr4.2:662045-662064 MS.gene62624:CDS 30.0%
! TTTTCAATGCAGAAACTATG+CGG + chr4.2:661526-661545 None:intergenic 30.0%
!! GTTTGACTTGTTTCAGAAAT+TGG - chr4.2:661343-661362 MS.gene62624:CDS 30.0%
!!! GATTTTGAGGTAGTTGATAA+AGG - chr4.2:660768-660787 MS.gene62624:CDS 30.0%
AAAAGCTCTTGAGTCTATGA+TGG - chr4.2:660944-660963 MS.gene62624:CDS 35.0%
AAACAAGTCAAACCCACTTA+CGG + chr4.2:661336-661355 None:intergenic 35.0%
AAAGACTAACTGCAATGCAA+TGG - chr4.2:662080-662099 MS.gene62624:CDS 35.0%
AAAGCTCTTGAGTCTATGAT+GGG - chr4.2:660945-660964 MS.gene62624:CDS 35.0%
AAAGTAACAAGCATGCATGT+GGG - chr4.2:662004-662023 MS.gene62624:CDS 35.0%
AACAACATCCAAAGGATTCA+TGG + chr4.2:661243-661262 None:intergenic 35.0%
AACGAATATCAACAGGACTT+TGG - chr4.2:661579-661598 MS.gene62624:CDS 35.0%
AATGCAGAAGATTGAATCCA+TGG - chr4.2:661649-661668 MS.gene62624:CDS 35.0%
ACTGCTTTCACTGTAAACTT+CGG + chr4.2:659812-659831 None:intergenic 35.0%
ACTTCTTCATATCGTCTCAT+TGG + chr4.2:661908-661927 None:intergenic 35.0%
AGAATGAGAAGAAAGGGATT+TGG - chr4.2:659956-659975 MS.gene62624:CDS 35.0%
AGATAAATTGAAAAGGGACG+TGG + chr4.2:660249-660268 None:intergenic 35.0%
AGATGAAGAAACTGTGACTA+GGG - chr4.2:661025-661044 MS.gene62624:CDS 35.0%
AGGAATCATGAACTGGATTT+GGG + chr4.2:660689-660708 None:intergenic 35.0%
AGTTGTAAAGGTGGAATTTC+AGG + chr4.2:661107-661126 None:intergenic 35.0%
ATGAGACGATATGAAGAAGT+TGG - chr4.2:661908-661927 MS.gene62624:CDS 35.0%
ATTCCACCTTTACAACTTGA+AGG - chr4.2:661110-661129 MS.gene62624:CDS 35.0%
ATTGAAAATTCAAGCTGACG+TGG - chr4.2:661682-661701 MS.gene62624:CDS 35.0%
CAAACATTATCAGTTCAGGA+AGG - chr4.2:661552-661571 MS.gene62624:CDS 35.0%
CAAAGCTTAAGCTACAACAA+AGG - chr4.2:661812-661831 MS.gene62624:CDS 35.0%
CAAATCATCCATTCCTTGAA+TGG + chr4.2:660655-660674 None:intergenic 35.0%
CTTCTTCTCATGATTGTTGT+TGG + chr4.2:660220-660239 None:intergenic 35.0%
GAAGTATATCTTTCTGACCT+CGG - chr4.2:661167-661186 MS.gene62624:CDS 35.0%
GAGGTCAGAAAGATATACTT+CGG + chr4.2:661168-661187 None:intergenic 35.0%
GTTCCACAAATAAGAATGCA+TGG - chr4.2:662044-662063 MS.gene62624:CDS 35.0%
TCACTTTACAAGCTTGACAT+CGG + chr4.2:662233-662252 None:intergenic 35.0%
TCAGATTCTTGAAGAACTAG+AGG - chr4.2:659666-659685 MS.gene62624:CDS 35.0%
TCATTGTGATCTTCAATGGA+TGG + chr4.2:659778-659797 None:intergenic 35.0%
TCTTCAAGAATCTGAGCATT+GGG + chr4.2:659661-659680 None:intergenic 35.0%
TTCCACCTTTACAACTTGAA+GGG - chr4.2:661111-661130 MS.gene62624:CDS 35.0%
TTCTTCAAGAATCTGAGCAT+TGG + chr4.2:659662-659681 None:intergenic 35.0%
TTTCAATGCAGAAACTATGC+GGG + chr4.2:661525-661544 None:intergenic 35.0%
TTTCAGATTGTGGAGAAAGA+TGG - chr4.2:660441-660460 MS.gene62624:CDS 35.0%
TTTCCCATCAGTTCATCTAT+CGG + chr4.2:661419-661438 None:intergenic 35.0%
! ATGCAATGGTTAGTTGCATA+TGG - chr4.2:662094-662113 MS.gene62624:CDS 35.0%
! CTTTGTTGTAGCTTAAGCTT+TGG + chr4.2:661814-661833 None:intergenic 35.0%
! TGCAATGGTTAGTTGCATAT+GGG - chr4.2:662095-662114 MS.gene62624:CDS 35.0%
! TTTTGATCTTCCGGATTTTG+AGG - chr4.2:660755-660774 MS.gene62624:CDS 35.0%
!! GAAACTTGGTTTTCAGATTG+TGG - chr4.2:660431-660450 MS.gene62624:CDS 35.0%
AACTTTCTGGACAGAAGAAG+AGG + chr4.2:660709-660728 None:intergenic 40.0%
AAGTTATCTGGAAAGGCGAA+AGG - chr4.2:660393-660412 MS.gene62624:CDS 40.0%
AATATCAGCGTGACTCTTTC+AGG + chr4.2:661866-661885 None:intergenic 40.0%
AATCCTCCACTTGTTCTATG+TGG + chr4.2:660737-660756 None:intergenic 40.0%
ACTCCTTCACATTCACATGA+AGG - chr4.2:660621-660640 MS.gene62624:CDS 40.0%
AGAAGAAAGGGATTTGGAAG+TGG - chr4.2:659962-659981 MS.gene62624:CDS 40.0%
AGACGATATGAAGAAGTTGG+AGG - chr4.2:661911-661930 MS.gene62624:CDS 40.0%
AGGAAGAAGGAAACAAAGGA+TGG - chr4.2:660108-660127 MS.gene62624:CDS 40.0%
AGGAGAGAACGAATATCAAC+AGG - chr4.2:661572-661591 MS.gene62624:CDS 40.0%
AGGGAAGAAGACATTGACAA+AGG - chr4.2:662138-662157 MS.gene62624:CDS 40.0%
AGTTGTTCGTGGCAAAACAA+GGG + chr4.2:659749-659768 None:intergenic 40.0%
ATCGAATGGAGCTTCTTCTT+CGG + chr4.2:661708-661727 None:intergenic 40.0%
ATGCCGATAGATGAACTGAT+GGG - chr4.2:661413-661432 MS.gene62624:CDS 40.0%
ATGCGTGCACTTTCACATAT+TGG - chr4.2:659991-660010 MS.gene62624:CDS 40.0%
ATGTGGGTGGTTTCAAAGTT+AGG - chr4.2:662020-662039 MS.gene62624:CDS 40.0%
CAAAGTAACAAGCATGCATG+TGG - chr4.2:662003-662022 MS.gene62624:CDS 40.0%
CAAGAGAAGGAAGAAGATGA+AGG - chr4.2:660801-660820 MS.gene62624:CDS 40.0%
CACTTTACAAGCTTGACATC+GGG + chr4.2:662232-662251 None:intergenic 40.0%
CAGATGAAGAAACTGTGACT+AGG - chr4.2:661024-661043 MS.gene62624:CDS 40.0%
CGTTAGGAAGAAGGAAACAA+AGG - chr4.2:660104-660123 MS.gene62624:CDS 40.0%
CTATGTGGTCATCAACTTTC+TGG + chr4.2:660722-660741 None:intergenic 40.0%
CTGGACTTTGAATTCTGCAT+TGG + chr4.2:660504-660523 None:intergenic 40.0%
CTGTTTGTTCTCTGTTGAAG+TGG - chr4.2:660029-660048 MS.gene62624:CDS 40.0%
CTTATTCATGCAACACGTTC+TGG - chr4.2:661947-661966 MS.gene62624:CDS 40.0%
GAAATTCCATCCTCAAGCTT+TGG + chr4.2:659883-659902 None:intergenic 40.0%
GAAGAAGAGGAATCATGAAC+TGG + chr4.2:660696-660715 None:intergenic 40.0%
GAATCCTTTGGATGTTGTTG+TGG - chr4.2:661244-661263 MS.gene62624:CDS 40.0%
GAGGAATCATGAACTGGATT+TGG + chr4.2:660690-660709 None:intergenic 40.0%
GGGAAGAAGACATTGACAAA+GGG - chr4.2:662139-662158 MS.gene62624:CDS 40.0%
TATCTTTCTGACCTCGGTAA+AGG - chr4.2:661173-661192 MS.gene62624:CDS 40.0%
TCGTTTCTGCTTGTCATTCT+AGG + chr4.2:660594-660613 None:intergenic 40.0%
TCTCTAATCCAATCCTCAAG+TGG + chr4.2:661791-661810 None:intergenic 40.0%
TGAAAGAGTCACGCTGATAT+TGG - chr4.2:661865-661884 MS.gene62624:CDS 40.0%
TGACAAACTACTCAACTTGC+TGG + chr4.2:660523-660542 None:intergenic 40.0%
TGATCTTCAATGGATGGAAC+AGG + chr4.2:659772-659791 None:intergenic 40.0%
TGATGACCACATAGAACAAG+TGG - chr4.2:660728-660747 MS.gene62624:CDS 40.0%
TGGGAGAGAATGAGAAGAAA+GGG - chr4.2:659950-659969 MS.gene62624:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG - chr4.2:661203-661222 MS.gene62624:CDS 40.0%
TTCCAAGACAGAAACCAAAG+AGG - chr4.2:659900-659919 MS.gene62624:CDS 40.0%
TTCCTTCTTCCTAACGCAAA+CGG + chr4.2:660100-660119 None:intergenic 40.0%
TTGGGAGAGAATGAGAAGAA+AGG - chr4.2:659949-659968 MS.gene62624:CDS 40.0%
TTTCAGAAATTGGCTGGCAT+TGG - chr4.2:661353-661372 MS.gene62624:CDS 40.0%
! ACTGCAACTGCAAGTTCTAA+TGG - chr4.2:661836-661855 MS.gene62624:CDS 40.0%
! ATATGTGAAAGTGCACGCAT+CGG + chr4.2:659991-660010 None:intergenic 40.0%
! ATGGTTAGTTGCATATGGGT+TGG - chr4.2:662099-662118 MS.gene62624:CDS 40.0%
! GACTTGTTTCAGAAATTGGC+TGG - chr4.2:661347-661366 MS.gene62624:CDS 40.0%
! GAGCTTCAAGTTATCTGGAA+AGG - chr4.2:660386-660405 MS.gene62624:CDS 40.0%
! GATACGAGCTTCAAGTTATC+TGG - chr4.2:660381-660400 MS.gene62624:CDS 40.0%
! GATGTCAAAGCCTTTTGTGT+TGG - chr4.2:661298-661317 MS.gene62624:CDS 40.0%
! GGAAAGTGGGAAAGATCTTT+TGG - chr4.2:661754-661773 MS.gene62624:CDS 40.0%
! GGATGTGTGTGATTTGTAGA+GGG + chr4.2:659704-659723 None:intergenic 40.0%
! GTAAAGGTGGAATTTCAGGT+TGG + chr4.2:661103-661122 None:intergenic 40.0%
! GTCCCATGCATTCTTATTTG+TGG + chr4.2:662050-662069 None:intergenic 40.0%
! TGATATTGGTTGTCCAACTG+CGG - chr4.2:661879-661898 MS.gene62624:CDS 40.0%
! TGCTATGGAGTATTTCGTCA+CGG - chr4.2:662170-662189 MS.gene62624:CDS 40.0%
! TGGATGTGTGTGATTTGTAG+AGG + chr4.2:659705-659724 None:intergenic 40.0%
! TGGTTAGTTGCATATGGGTT+GGG - chr4.2:662100-662119 MS.gene62624:CDS 40.0%
!! ACATCTGCATTGCTAGCTTT+GGG + chr4.2:661283-661302 None:intergenic 40.0%
!! AGAAGCTTCTCTGAAGTAAC+TGG + chr4.2:661620-661639 None:intergenic 40.0%
!! AGTGGAGGATTTTGATCTTC+CGG - chr4.2:660746-660765 MS.gene62624:CDS 40.0%
!! GGAGAACTTGTTGTGAAACT+TGG - chr4.2:660417-660436 MS.gene62624:CDS 40.0%
!! GGATTTTGGAAGAAGCTATG+TGG - chr4.2:660293-660312 MS.gene62624:CDS 40.0%
!! GGTAGTTGATAAAGGGATTG+AGG - chr4.2:660776-660795 MS.gene62624:CDS 40.0%
!!! ACCTTGTTGGCTTTTCTCAA+CGG + chr4.2:660343-660362 None:intergenic 40.0%
AGAGGAAGAGACGGAATCAT+TGG - chr4.2:660998-661017 MS.gene62624:CDS 45.0%
AGCTCAAAGAAAGGGGAAAG+TGG - chr4.2:661740-661759 MS.gene62624:CDS 45.0%
AGGCACACTGAAGGATGATT+TGG + chr4.2:660568-660587 None:intergenic 45.0%
AGGGATTGAGGTTCAAGAGA+AGG - chr4.2:660788-660807 MS.gene62624:CDS 45.0%
ATGCCATCACGTGTTTCACA+AGG - chr4.2:660144-660163 MS.gene62624:CDS 45.0%
CAAGACAGAAACCAAAGAGG+TGG - chr4.2:659903-659922 MS.gene62624:CDS 45.0%
CAAGCTCAGACAATCTAGCA+TGG + chr4.2:660905-660924 None:intergenic 45.0%
CAGATTGTGGAGAAAGATGG+AGG - chr4.2:660444-660463 MS.gene62624:CDS 45.0%
CAGTTCATCTATCGGCATCA+AGG + chr4.2:661411-661430 None:intergenic 45.0%
CATCGCATGAATCCGTAAGT+GGG - chr4.2:661321-661340 MS.gene62624:CDS 45.0%
CCACCTTCATGTGAATGTGA+AGG + chr4.2:660627-660646 None:intergenic 45.0%
CCTTCACATTCACATGAAGG+TGG - chr4.2:660624-660643 MS.gene62624:CDS 45.0%
CTAGCCACAACAACATCCAA+AGG + chr4.2:661251-661270 None:intergenic 45.0%
CTGAGTGCAGAAACATCGAA+TGG + chr4.2:661722-661741 None:intergenic 45.0%
CTGCACTCAGCTCAAAGAAA+GGG - chr4.2:661732-661751 MS.gene62624:CDS 45.0%
CTGCTATTCCACTTGAGGAT+TGG - chr4.2:661780-661799 MS.gene62624:CDS 45.0%
CTTAGTCCGTTCATGGAAGA+AGG + chr4.2:660072-660091 None:intergenic 45.0%
CTTGACATCGGGATTTCTCA+TGG + chr4.2:662221-662240 None:intergenic 45.0%
CTTGGCTTCCATGAATCCTT+TGG - chr4.2:661232-661251 MS.gene62624:CDS 45.0%
CTTGTTCCTACCTTGTACGA+CGG + chr4.2:661480-661499 None:intergenic 45.0%
GAAGGAAGAAGATGAAGGTG+AGG - chr4.2:660806-660825 MS.gene62624:CDS 45.0%
GACCTTCCTTCTTCCATGAA+CGG - chr4.2:660063-660082 MS.gene62624:CDS 45.0%
GAGTTGTTCGTGGCAAAACA+AGG + chr4.2:659750-659769 None:intergenic 45.0%
GATGCCGATAGATGAACTGA+TGG - chr4.2:661412-661431 MS.gene62624:CDS 45.0%
GATTGAATCCATGGCAGTTG+AGG - chr4.2:661658-661677 MS.gene62624:CDS 45.0%
GCATGAATAAGCACCATCGT+AGG + chr4.2:661938-661957 None:intergenic 45.0%
GCTCAAAGAAAGGGGAAAGT+GGG - chr4.2:661741-661760 MS.gene62624:CDS 45.0%
GGAGTTTCTTCAGATGCTTG+AGG - chr4.2:661046-661065 MS.gene62624:CDS 45.0%
GTACAAGGTAGGAACAAGGA+AGG - chr4.2:661482-661501 MS.gene62624:CDS 45.0%
GTGACGAAATACTCCATAGC+AGG + chr4.2:662171-662190 None:intergenic 45.0%
GTGGTTCAAACAAGAGATGG+CGG - chr4.2:661206-661225 MS.gene62624:CDS 45.0%
GTTTCTTCAGATGCTTGAGG+AGG - chr4.2:661049-661068 MS.gene62624:CDS 45.0%
TCAAGACCAAAGCTTGAGGA+TGG - chr4.2:659874-659893 MS.gene62624:CDS 45.0%
TCATGCGATGCCAACACAAA+AGG + chr4.2:661311-661330 None:intergenic 45.0%
TCCGTTGAGAAAAGCCAACA+AGG - chr4.2:660339-660358 MS.gene62624:CDS 45.0%
TCTGCACTCAGCTCAAAGAA+AGG - chr4.2:661731-661750 MS.gene62624:CDS 45.0%
TGACCACATAGAACAAGTGG+AGG - chr4.2:660731-660750 MS.gene62624:CDS 45.0%
TGCACTCAGCTCAAAGAAAG+GGG - chr4.2:661733-661752 MS.gene62624:CDS 45.0%
TGGGAAAAGCAGGGAAGAAA+GGG - chr4.2:662119-662138 MS.gene62624:CDS 45.0%
TGTGTTAACCACCACCTCTT+TGG + chr4.2:659917-659936 None:intergenic 45.0%
TTATCTGGAAAGGCGAAAGG+AGG - chr4.2:660396-660415 MS.gene62624:CDS 45.0%
TTCACAACCTCATCTGCAAC+CGG + chr4.2:660858-660877 None:intergenic 45.0%
TTCATCTATCGGCATCAAGG+AGG + chr4.2:661408-661427 None:intergenic 45.0%
TTGGGAAAAGCAGGGAAGAA+AGG - chr4.2:662118-662137 MS.gene62624:CDS 45.0%
TTTCAATGCCTCAACTGCCA+TGG + chr4.2:661669-661688 None:intergenic 45.0%
TTTGGATTGTTTGCGTGCGA+AGG + chr4.2:660550-660569 None:intergenic 45.0%
! CACCTCTTTGGTTTCTGTCT+TGG + chr4.2:659905-659924 None:intergenic 45.0%
! GACATCTGCATTGCTAGCTT+TGG + chr4.2:661284-661303 None:intergenic 45.0%
! GAGTCTATGATGGGAGATGA+TGG - chr4.2:660954-660973 MS.gene62624:CDS 45.0%
! GATATTGGTTGTCCAACTGC+GGG - chr4.2:661880-661899 MS.gene62624:CDS 45.0%
! GATGCTCAAGAGCTGGATTT+TGG - chr4.2:660279-660298 MS.gene62624:CDS 45.0%
! TAAGACTAGCCGTTTGCGTT+AGG - chr4.2:660088-660107 MS.gene62624:CDS 45.0%
! TGCAACCGGTTTCTCTTCTA+TGG + chr4.2:660844-660863 None:intergenic 45.0%
!! AACAAGAGATGGCGGATACT+TGG - chr4.2:661214-661233 MS.gene62624:CDS 45.0%
!! CATATGGGTTGGGAAAAGCA+GGG - chr4.2:662110-662129 MS.gene62624:CDS 45.0%
!! CATCTGCATTGCTAGCTTTG+GGG + chr4.2:661282-661301 None:intergenic 45.0%
!! CTGAGCATTGGGATTGTTCT+TGG + chr4.2:659650-659669 None:intergenic 45.0%
!! CTGCTTGTCATTCTAGGACT+AGG + chr4.2:660588-660607 None:intergenic 45.0%
!! GCAGAGCAGATTGCTTTTGA+AGG - chr4.2:661443-661462 MS.gene62624:CDS 45.0%
!! GCATGCCCTTCAAGTTGTAA+AGG + chr4.2:661119-661138 None:intergenic 45.0%
!! GGCATTGGTCTTGATGAACT+CGG - chr4.2:661368-661387 MS.gene62624:CDS 45.0%
!! TGCCCTTCAAGTTGTAAAGG+TGG + chr4.2:661116-661135 None:intergenic 45.0%
AACACGTTCTGGCACAAAGG+GGG - chr4.2:661958-661977 MS.gene62624:CDS 50.0%
AGAAGTTGGAGGACCTACGA+TGG - chr4.2:661922-661941 MS.gene62624:CDS 50.0%
AGAGAAACCGGTTGCAGATG+AGG - chr4.2:660848-660867 MS.gene62624:CDS 50.0%
AGCCGTTTGCGTTAGGAAGA+AGG - chr4.2:660095-660114 MS.gene62624:CDS 50.0%
CAAAGGGACAAGACCTGCTA+TGG - chr4.2:662155-662174 MS.gene62624:CDS 50.0%
CAACACGTTCTGGCACAAAG+GGG - chr4.2:661957-661976 MS.gene62624:CDS 50.0%
CGTCGTACAAGGTAGGAACA+AGG - chr4.2:661478-661497 MS.gene62624:CDS 50.0%
GACAGAAACCAAAGAGGTGG+TGG - chr4.2:659906-659925 MS.gene62624:CDS 50.0%
GAGGAGGATCAAGACAGCAA+AGG - chr4.2:661065-661084 MS.gene62624:CDS 50.0%
GAGTATTTCGTCACGGATCG+TGG - chr4.2:662177-662196 MS.gene62624:CDS 50.0%
GATGGAACAGGAGTTGTTCG+TGG + chr4.2:659760-659779 None:intergenic 50.0%
GCAACACGTTCTGGCACAAA+GGG - chr4.2:661956-661975 MS.gene62624:CDS 50.0%
GCATCGCATGAATCCGTAAG+TGG - chr4.2:661320-661339 MS.gene62624:CDS 50.0%
GCGATCAAGACCAAAGCTTG+AGG - chr4.2:659870-659889 MS.gene62624:CDS 50.0%
GCTCCTTGTGAAACACGTGA+TGG + chr4.2:660150-660169 None:intergenic 50.0%
GGCTTCTGCTATTCCACTTG+AGG - chr4.2:661775-661794 MS.gene62624:CDS 50.0%
GGTTGCAGATGAGGTTGTGA+AGG - chr4.2:660857-660876 MS.gene62624:CDS 50.0%
GTAACAAGCATGCATGTGGG+TGG - chr4.2:662007-662026 MS.gene62624:CDS 50.0%
GTCCGTTCATGGAAGAAGGA+AGG + chr4.2:660068-660087 None:intergenic 50.0%
TCCTCCATCTTCCGGAGAAT+CGG + chr4.2:661141-661160 None:intergenic 50.0%
TCGGATTCTCCTCCATCTTC+CGG + chr4.2:661149-661168 None:intergenic 50.0%
TCTGACCTCGGTAAAGGCTT+GGG - chr4.2:661179-661198 MS.gene62624:CDS 50.0%
TGCAACACGTTCTGGCACAA+AGG - chr4.2:661955-661974 MS.gene62624:CDS 50.0%
TGCTGTTGATGCTCAAGAGC+TGG - chr4.2:660272-660291 MS.gene62624:CDS 50.0%
TTCTGACCTCGGTAAAGGCT+TGG - chr4.2:661178-661197 MS.gene62624:CDS 50.0%
! TCTAGGACTAGGCACACTGA+AGG + chr4.2:660577-660596 None:intergenic 50.0%
! TGGCAGTGCCATTCAAGGAA+TGG - chr4.2:660644-660663 MS.gene62624:CDS 50.0%
!! AGCTTTGGTCTTGATCGCCA+TGG + chr4.2:659868-659887 None:intergenic 50.0%
!! CTTTGGTCTTGATCGCCATG+GGG + chr4.2:659866-659885 None:intergenic 50.0%
!! GCATATGGGTTGGGAAAAGC+AGG - chr4.2:662109-662128 MS.gene62624:CDS 50.0%
!! GCTTTGGTCTTGATCGCCAT+GGG + chr4.2:659867-659886 None:intergenic 50.0%
!! GGCTAGTCTTAGTCCGTTCA+TGG + chr4.2:660079-660098 None:intergenic 50.0%
AAGGTGCACGAGTTAGGCAG+TGG - chr4.2:660358-660377 MS.gene62624:CDS 55.0%
AGCTGTTCTTCGAGCTGTGG+TGG + chr4.2:659725-659744 None:intergenic 55.0%
AGGTGCACGAGTTAGGCAGT+GGG - chr4.2:660359-660378 MS.gene62624:CDS 55.0%
ATGGGGACAAGGACATGCGA+CGG + chr4.2:659849-659868 None:intergenic 55.0%
CACAACCCAAGCCTTTACCG+AGG + chr4.2:661187-661206 None:intergenic 55.0%
CACGGATCGTGGCTGATATG+TGG - chr4.2:662188-662207 MS.gene62624:CDS 55.0%
GCCAACAAGGTGCACGAGTT+AGG - chr4.2:660352-660371 MS.gene62624:CDS 55.0%
GCCTAACTCGTGCACCTTGT+TGG + chr4.2:660356-660375 None:intergenic 55.0%
GGAAGCTGTTCTTCGAGCTG+TGG + chr4.2:659728-659747 None:intergenic 55.0%
GTCTCATTGGATCCCGCAGT+TGG + chr4.2:661895-661914 None:intergenic 55.0%
TCTTGATCGCCATGGGGACA+AGG + chr4.2:659860-659879 None:intergenic 55.0%
TGACAAGCAGAAACGACGCG+TGG - chr4.2:660598-660617 MS.gene62624:CDS 55.0%
TTCTGGCACAAAGGGGGCTA+AGG - chr4.2:661964-661983 MS.gene62624:CDS 55.0%
! CGGTAAAGGCTTGGGTTGTG+TGG - chr4.2:661187-661206 MS.gene62624:CDS 55.0%
! GAAGGTGGCAGTGCCATTCA+AGG - chr4.2:660639-660658 MS.gene62624:CDS 55.0%
!! CATGCCGATTCTCCGGAAGA+TGG - chr4.2:661134-661153 MS.gene62624:CDS 55.0%
!! TGAAGGGCATGCCGATTCTC+CGG - chr4.2:661127-661146 MS.gene62624:CDS 55.0%
AAGGACATGCGACGGGATCG+AGG + chr4.2:659841-659860 None:intergenic 60.0%
AGAAACTATGCGGGCAGCGC+TGG + chr4.2:661516-661535 None:intergenic 60.0%
ATCGCGTCAGCCGTCGTACA+AGG - chr4.2:661467-661486 MS.gene62624:CDS 60.0%
CACAAAGGGGGCTAAGGAGG+AGG - chr4.2:661970-661989 MS.gene62624:CDS 60.0%
CGTCAGCCGTCGTACAAGGT+AGG - chr4.2:661471-661490 MS.gene62624:CDS 60.0%
GGGCTAAGGAGGAGGAGAAG+AGG - chr4.2:661978-661997 MS.gene62624:CDS 60.0%
GTCGCATGTCCTTGTCCCCA+TGG - chr4.2:659848-659867 MS.gene62624:CDS 60.0%
TGGCACAAAGGGGGCTAAGG+AGG - chr4.2:661967-661986 MS.gene62624:CDS 60.0%
TGGGGACAAGGACATGCGAC+GGG + chr4.2:659848-659867 None:intergenic 60.0%
! GCCGATTCTCCGGAAGATGG+AGG - chr4.2:661137-661156 MS.gene62624:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 659637 662252 659637 ID=MS.gene62624
chr4.2 mRNA 659637 662252 659637 ID=MS.gene62624.t1;Parent=MS.gene62624
chr4.2 exon 659637 662252 659637 ID=MS.gene62624.t1.exon1;Parent=MS.gene62624.t1
chr4.2 CDS 659637 662252 659637 ID=cds.MS.gene62624.t1;Parent=MS.gene62624.t1
Gene Sequence

>MS.gene62624

ATGGCAGATGCCAAGAACAATCCCAATGCTCAGATTCTTGAAGAACTAGAGGCTCTGAGTGAAACCCTCTACAAATCACACACATCCACCACAGCTCGAAGAACAGCTTCCCTTGTTTTGCCACGAACAACTCCTGTTCCATCCATTGAAGATCACAATGACAATCACGCAACCGAAGTTTACAGTGAAAGCAGTAACAAACCTCGATCCCGTCGCATGTCCTTGTCCCCATGGCGATCAAGACCAAAGCTTGAGGATGGAATTTCCAAGACAGAAACCAAAGAGGTGGTGGTTAACACATCAACAACTAATTTGGGAGAGAATGAGAAGAAAGGGATTTGGAAGTGGAAGCCGATGCGTGCACTTTCACATATTGGAATGCAGAAACTAAGCTGTTTGTTCTCTGTTGAAGTGGTAGCTGCTCAAGACCTTCCTTCTTCCATGAACGGACTAAGACTAGCCGTTTGCGTTAGGAAGAAGGAAACAAAGGATGGTGCTGTTAAGACAATGCCATCACGTGTTTCACAAGGAGCTGCTGATTTCGAAGAGACACTTTTCATCAAGTGCCATGCTTATTATACCAACAACAATCATGAGAAGAAGTTTGAGCCACGTCCCTTTTCAATTTATCTTTTTGCTGTTGATGCTCAAGAGCTGGATTTTGGAAGAAGCTATGTGGATTTGAGCGAGTTGATTCGAGAGTCCGTTGAGAAAAGCCAACAAGGTGCACGAGTTAGGCAGTGGGATACGAGCTTCAAGTTATCTGGAAAGGCGAAAGGAGGAGAACTTGTTGTGAAACTTGGTTTTCAGATTGTGGAGAAAGATGGAGGAGTTGATATATACAATAATACAAATAACAATAGTCCAATGCAGAATTCAAAGTCCAGCAAGTTGAGTAGTTTGTCATCTTCCTTCGCACGCAAACAATCCAAATCATCCTTCAGTGTGCCTAGTCCTAGAATGACAAGCAGAAACGACGCGTGGACTCCTTCACATTCACATGAAGGTGGCAGTGCCATTCAAGGAATGGATGATTTGAATCTTGATGACCCAAATCCAGTTCATGATTCCTCTTCTTCTGTCCAGAAAGTTGATGACCACATAGAACAAGTGGAGGATTTTGATCTTCCGGATTTTGAGGTAGTTGATAAAGGGATTGAGGTTCAAGAGAAGGAAGAAGATGAAGGTGAGGAATCTGATAAAACCATAGAAGAGAAACCGGTTGCAGATGAGGTTGTGAAGGAAGTAGTGCACGATCATGTGCACCATGCTAGATTGTCTGAGCTTGATTCAATTGCTCAACAAATAAAAGCTCTTGAGTCTATGATGGGAGATGATGGAATTAATAATTCAATGAAAATAGAGGAAGAGACGGAATCATTGGATGCAGATGAAGAAACTGTGACTAGGGAGTTTCTTCAGATGCTTGAGGAGGATCAAGACAGCAAAGGATACTTATTCGACCAACCTGAAATTCCACCTTTACAACTTGAAGGGCATGCCGATTCTCCGGAAGATGGAGGAGAATCCGAAGTATATCTTTCTGACCTCGGTAAAGGCTTGGGTTGTGTGGTTCAAACAAGAGATGGCGGATACTTGGCTTCCATGAATCCTTTGGATGTTGTTGTGGCTAGAAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCTTTTGTGTTGGCATCGCATGAATCCGTAAGTGGGTTTGACTTGTTTCAGAAATTGGCTGGCATTGGTCTTGATGAACTCGGCTCTCTAATTTTATCCTCCTTGATGCCGATAGATGAACTGATGGGAAAAACTGCAGAGCAGATTGCTTTTGAAGGCATCGCGTCAGCCGTCGTACAAGGTAGGAACAAGGAAGGAGCAAGTTCCAGCGCTGCCCGCATAGTTTCTGCATTGAAAAGCATGTCAAACATTATCAGTTCAGGAAGGAGAGAACGAATATCAACAGGACTTTGGAATGTTGATGAAAATCCAGTTACTTCAGAGAAGCTTCTTTCTATATCAATGCAGAAGATTGAATCCATGGCAGTTGAGGCATTGAAAATTCAAGCTGACGTGGCCGAAGAAGAAGCTCCATTCGATGTTTCTGCACTCAGCTCAAAGAAAGGGGAAAGTGGGAAAGATCTTTTGGCTTCTGCTATTCCACTTGAGGATTGGATTAGAGACCAAAGCTTAAGCTACAACAAAGGTACTGCAACTGCAAGTTCTAATGGTGAACCTGAAAGAGTCACGCTGATATTGGTTGTCCAACTGCGGGATCCAATGAGACGATATGAAGAAGTTGGAGGACCTACGATGGTGCTTATTCATGCAACACGTTCTGGCACAAAGGGGGCTAAGGAGGAGGAGAAGAGGTTCAAAGTAACAAGCATGCATGTGGGTGGTTTCAAAGTTAGGAGTTCCACAAATAAGAATGCATGGGACAATGAGAAGCAAAGACTAACTGCAATGCAATGGTTAGTTGCATATGGGTTGGGAAAAGCAGGGAAGAAAGGGAAGAAGACATTGACAAAGGGACAAGACCTGCTATGGAGTATTTCGTCACGGATCGTGGCTGATATGTGGCTCAAAACCATGAGAAATCCCGATGTCAAGCTTGTAAAGTGA

Protein sequence

>MS.gene62624.t1

MADAKNNPNAQILEELEALSETLYKSHTSTTARRTASLVLPRTTPVPSIEDHNDNHATEVYSESSNKPRSRRMSLSPWRSRPKLEDGISKTETKEVVVNTSTTNLGENEKKGIWKWKPMRALSHIGMQKLSCLFSVEVVAAQDLPSSMNGLRLAVCVRKKETKDGAVKTMPSRVSQGAADFEETLFIKCHAYYTNNNHEKKFEPRPFSIYLFAVDAQELDFGRSYVDLSELIRESVEKSQQGARVRQWDTSFKLSGKAKGGELVVKLGFQIVEKDGGVDIYNNTNNNSPMQNSKSSKLSSLSSSFARKQSKSSFSVPSPRMTSRNDAWTPSHSHEGGSAIQGMDDLNLDDPNPVHDSSSSVQKVDDHIEQVEDFDLPDFEVVDKGIEVQEKEEDEGEESDKTIEEKPVADEVVKEVVHDHVHHARLSELDSIAQQIKALESMMGDDGINNSMKIEEETESLDADEETVTREFLQMLEEDQDSKGYLFDQPEIPPLQLEGHADSPEDGGESEVYLSDLGKGLGCVVQTRDGGYLASMNPLDVVVARKDTPKLAMQMSKPFVLASHESVSGFDLFQKLAGIGLDELGSLILSSLMPIDELMGKTAEQIAFEGIASAVVQGRNKEGASSSAARIVSALKSMSNIISSGRRERISTGLWNVDENPVTSEKLLSISMQKIESMAVEALKIQADVAEEEAPFDVSALSSKKGESGKDLLASAIPLEDWIRDQSLSYNKGTATASSNGEPERVTLILVVQLRDPMRRYEEVGGPTMVLIHATRSGTKGAKEEEKRFKVTSMHVGGFKVRSSTNKNAWDNEKQRLTAMQWLVAYGLGKAGKKGKKTLTKGQDLLWSISSRIVADMWLKTMRNPDVKLVK