AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003886.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003886.01.T01 MTR_1g070380 63.710 248 11 2 18 186 109 356 2.46e-89 278
MsG0180003886.01.T01 MTR_1g070380 76.119 134 19 2 205 338 447 567 9.38e-56 191
MsG0180003886.01.T01 MTR_1g070380 63.454 249 11 2 18 186 109 357 3.20e-89 278
MsG0180003886.01.T01 MTR_1g070380 76.119 134 19 2 205 338 448 568 8.78e-56 191
MsG0180003886.01.T01 MTR_7g115340 53.179 173 41 1 44 176 52 224 2.55e-50 174
MsG0180003886.01.T01 MTR_7g115340 34.535 333 150 9 44 338 139 441 9.81e-35 132
MsG0180003886.01.T01 MTR_7g115340 53.179 173 41 1 44 176 120 292 6.11e-50 174
MsG0180003886.01.T01 MTR_7g115340 34.535 333 150 9 44 338 207 509 9.43e-35 133
MsG0180003886.01.T01 MTR_4g127380 34.483 174 69 2 44 172 49 222 1.63e-24 103
MsG0180003886.01.T01 MTR_4g127380 56.897 58 24 1 205 262 316 372 2.69e-12 67.8
MsG0180003886.01.T01 MTR_2g038020 32.759 174 72 2 44 172 75 248 1.93e-20 92.0
MsG0180003886.01.T01 MTR_2g038020 58.621 58 23 1 205 262 344 400 2.02e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003886.01.T01 AT3G04610 51.685 178 43 2 44 178 168 345 3.90e-47 167
MsG0180003886.01.T01 AT3G04610 43.871 155 65 4 185 338 420 553 4.29e-26 109
MsG0180003886.01.T01 AT3G04610 51.685 178 43 2 44 178 168 345 3.90e-47 167
MsG0180003886.01.T01 AT3G04610 43.871 155 65 4 185 338 420 553 4.29e-26 109
MsG0180003886.01.T01 AT3G04610 51.685 178 43 2 44 178 192 369 6.86e-47 167
MsG0180003886.01.T01 AT3G04610 43.871 155 65 4 185 338 444 577 3.76e-26 109
MsG0180003886.01.T01 AT3G04610 51.685 178 43 2 44 178 192 369 6.86e-47 167
MsG0180003886.01.T01 AT3G04610 43.871 155 65 4 185 338 444 577 3.76e-26 109
MsG0180003886.01.T01 AT4G26000 28.963 328 126 7 44 264 79 406 1.06e-30 121

Find 119 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTGCAGATGCTGTTAT+TGG 0.179283 1:-69685708 MsG0180003886.01.T01:CDS
TCCTTGCAGATGCTGTTATT+GGG 0.228994 1:-69685707 MsG0180003886.01.T01:CDS
TGAGTTGTCCTGCATTAATT+TGG 0.244773 1:-69684540 MsG0180003886.01.T01:three_prime_UTR
GAACCGGAACTAAGATTTAA+TGG 0.254383 1:+69684570 None:intergenic
TGCATTAATTTGGATACTAT+TGG 0.282256 1:-69684530 MsG0180003886.01.T01:three_prime_UTR
ACTGCTCTTTCTGCGTTTCC+TGG 0.292106 1:+69688903 None:intergenic
GGTTGGTGAGGTGCATATTC+TGG 0.295699 1:+69686093 None:intergenic
TGCTGTGGAGGGTTTGTTAA+GGG 0.304132 1:-69687503 MsG0180003886.01.T01:CDS
GCAGACTATGGTTCTGTATA+CGG 0.316227 1:-69684661 MsG0180003886.01.T01:CDS
TGACCTTCAAATTGATCTTC+AGG 0.322531 1:+69689228 None:intergenic
TTCATCATGTTGTTCCTCAT+TGG 0.333120 1:+69689145 None:intergenic
ACTCCATCTACGCAAGTTCT+TGG 0.338110 1:-69686519 MsG0180003886.01.T01:CDS
CCCTCCACAGCAGGTGGTAT+GGG 0.358043 1:+69687514 None:intergenic
TCATCCCGTAGAGCGAAAAT+TGG 0.370426 1:+69686602 None:intergenic
CTGCTGTGGAGGGTTTGTTA+AGG 0.371139 1:-69687504 MsG0180003886.01.T01:CDS
CTATCTGATGCAGAATTTCA+TGG 0.372316 1:-69684822 MsG0180003886.01.T01:intron
AAATTGATCTTCAGGAAGAT+TGG 0.373892 1:+69689236 None:intergenic
TTCTGGTTACCTCGAATATC+TGG 0.380641 1:+69686110 None:intergenic
GCTGCACAGGCACAGGATCA+TGG 0.391664 1:-69684776 MsG0180003886.01.T01:CDS
CAAAAGGTTGGCAGTATCAT+TGG 0.395269 1:-69688996 MsG0180003886.01.T01:CDS
CATGCACCTCCTGCAGACTA+TGG 0.397147 1:-69684673 MsG0180003886.01.T01:CDS
TGTTTATGCATCTCCACAAT+CGG 0.399265 1:-69684707 MsG0180003886.01.T01:CDS
TCTGTATACGGCACCAACTA+TGG 0.406333 1:-69684649 MsG0180003886.01.T01:CDS
CAACCAAGAACTTGCGTAGA+TGG 0.407087 1:+69686516 None:intergenic
GATACTATTGGATAGGTTTG+AGG 0.415753 1:-69684518 MsG0180003886.01.T01:three_prime_UTR
CTTCCTGAAGATCAATTTGA+AGG 0.416905 1:-69689231 MsG0180003886.01.T01:CDS
ATATGCACCTCACCAACCTT+GGG 0.424443 1:-69686088 MsG0180003886.01.T01:CDS
TGAGGATATGATAATTAGTC+GGG 0.425764 1:-69684500 MsG0180003886.01.T01:three_prime_UTR
GATGCTGTTATTGGGGCATC+AGG 0.426229 1:-69685699 MsG0180003886.01.T01:CDS
CAAGAGACTAGAGGCGTGCC+AGG 0.430343 1:-69685627 MsG0180003886.01.T01:CDS
GACAACTCAAATACAAGAAC+CGG 0.434066 1:+69684554 None:intergenic
TCACCTTCTGCGGTATCTGC+AGG 0.447332 1:+69687448 None:intergenic
AAATGCTGTGGCCGCTGCAC+AGG 0.448170 1:-69684789 MsG0180003886.01.T01:CDS
TCTCCACAATCGGGTGCTGC+AGG 0.449847 1:-69684697 MsG0180003886.01.T01:CDS
AAAATTCTCGATGGACCTCC+AGG 0.453547 1:-69688921 MsG0180003886.01.T01:CDS
GGCAGCCCAACAGCTGGTTC+AGG 0.455068 1:-69685562 MsG0180003886.01.T01:CDS
CGGTACCGCTTCACAAATAC+AGG 0.455379 1:-69685583 MsG0180003886.01.T01:CDS
CCCCATACCACCTGCTGTGG+AGG 0.458955 1:-69687515 MsG0180003886.01.T01:CDS
GGATGTGGTTCCTGCACAAA+AGG 0.459642 1:-69689012 MsG0180003886.01.T01:CDS
ACCCTCCACAGCAGGTGGTA+TGG 0.462022 1:+69687513 None:intergenic
AATCCATTAAATCTTAGTTC+CGG 0.464445 1:-69684573 MsG0180003886.01.T01:three_prime_UTR
TGCATAAACAGGAGCATTAG+TGG 0.475309 1:+69684720 None:intergenic
AATATGCACCTCACCAACCT+TGG 0.480061 1:-69686089 MsG0180003886.01.T01:CDS
GATTGTGGAGATGCATAAAC+AGG 0.480753 1:+69684709 None:intergenic
TTGAGGATATGATAATTAGT+CGG 0.481791 1:-69684501 MsG0180003886.01.T01:three_prime_UTR
GAAAATTACTGAAGAGACTA+GGG 0.492182 1:-69688952 MsG0180003886.01.T01:CDS
TGTGGCCGCTGCACAGGCAC+AGG 0.493737 1:-69684783 MsG0180003886.01.T01:CDS
TAATTTGGATACTATTGGAT+AGG 0.499029 1:-69684525 MsG0180003886.01.T01:three_prime_UTR
ACTGCCTTGTGAACTCCTGC+GGG 0.500862 1:+69686554 None:intergenic
CTGCACAGGCACAGGATCAT+GGG 0.502030 1:-69684775 MsG0180003886.01.T01:CDS
AGCTACATTCGCCGTGCTAG+TGG 0.502423 1:-69685666 MsG0180003886.01.T01:CDS
AACTGCCTTGTGAACTCCTG+CGG 0.507070 1:+69686553 None:intergenic
GCAGGAAACCCTTGAGGAGG+AGG 0.507397 1:+69686063 None:intergenic
CCCGTAGAGCGAAAATTGGC+AGG 0.508061 1:+69686606 None:intergenic
AAAATACCTGAACCAGCTGT+TGG 0.509147 1:+69685556 None:intergenic
AAATACCTGAACCAGCTGTT+GGG 0.516621 1:+69685557 None:intergenic
TTGGTTGACCGCAGCATAGT+CGG 0.519525 1:-69686500 MsG0180003886.01.T01:CDS
ACAGCATCTGCAAGGACAGC+GGG 0.520861 1:+69685714 None:intergenic
ATTACATTCAATTCTAGTTG+AGG 0.521099 1:-69684615 MsG0180003886.01.T01:three_prime_UTR
TGGCCTGCAGCACCCGATTG+TGG 0.522361 1:+69684694 None:intergenic
TGGGATAGGAATTATAGCCT+TGG 0.528950 1:+69684740 None:intergenic
AATGAGGAACAACATGATGA+AGG 0.530225 1:-69689143 MsG0180003886.01.T01:CDS
CTGCGGTATCTGCAGGCTCA+CGG 0.532944 1:+69687455 None:intergenic
AATAGTATCCAAATTAATGC+AGG 0.537056 1:+69684532 None:intergenic
ATTTCAACAGTCATCTCCCC+TGG 0.539050 1:+69685609 None:intergenic
CCCATACCACCTGCTGTGGA+GGG 0.542943 1:-69687514 MsG0180003886.01.T01:CDS
GTTTATGCATCTCCACAATC+GGG 0.543833 1:-69684706 MsG0180003886.01.T01:CDS
AGAAAATTACTGAAGAGACT+AGG 0.543959 1:-69688953 MsG0180003886.01.T01:CDS
GCAGGTGGTATGGGGCGACC+TGG 0.546395 1:+69687523 None:intergenic
AAGAGACTAGAGGCGTGCCA+GGG 0.548270 1:-69685626 MsG0180003886.01.T01:CDS
TCGCCCCATACCACCTGCTG+TGG 0.550374 1:-69687518 MsG0180003886.01.T01:CDS
CTTAACAAACCCTCCACAGC+AGG 0.551754 1:+69687505 None:intergenic
CCTTGCAGATGCTGTTATTG+GGG 0.559089 1:-69685706 MsG0180003886.01.T01:CDS
ATATTCTCAATAGCCATAGT+TGG 0.559777 1:+69684636 None:intergenic
ATGCTCTTCAGTCAGAGCAT+TGG 0.561785 1:+69689169 None:intergenic
AACAGGAGCATTAGTGGGAT+AGG 0.562023 1:+69684726 None:intergenic
ATCTTGTTTGGAAACATGCA+AGG 0.563306 1:+69684442 None:intergenic
TTGGGCCCCTTCACCTTCTG+CGG 0.567192 1:+69687438 None:intergenic
GGCAGTATCATTGGACGCAA+AGG 0.569653 1:-69688987 MsG0180003886.01.T01:CDS
CCTCCACAGCAGGTGGTATG+GGG 0.570321 1:+69687515 None:intergenic
ATAGTATTGTTGAGATACAA+GGG 0.571153 1:-69686580 MsG0180003886.01.T01:CDS
TATACAGAACCATAGTCTGC+AGG 0.573572 1:+69684664 None:intergenic
GATAGTATTGTTGAGATACA+AGG 0.575053 1:-69686581 MsG0180003886.01.T01:CDS
GGCTGAAGCTGCAAATGCTG+TGG 0.578940 1:-69684801 MsG0180003886.01.T01:CDS
GTGGTTCCTGCACAAAAGGT+TGG 0.580292 1:-69689008 MsG0180003886.01.T01:CDS
GGCTGCCTGTATTTGTGAAG+CGG 0.580607 1:+69685578 None:intergenic
ATGCAACGACCAGATATTCG+AGG 0.585953 1:-69686119 MsG0180003886.01.T01:CDS
AATACAGGCAGCCCAACAGC+TGG 0.586128 1:-69685568 MsG0180003886.01.T01:CDS
ATGAGGAACAACATGATGAA+GGG 0.586356 1:-69689142 MsG0180003886.01.T01:CDS
CATAGTCTGCAGGAGGTGCA+TGG 0.588210 1:+69684674 None:intergenic
GTTTCTGCAAAAGAAGAGCC+AGG 0.591249 1:-69687541 MsG0180003886.01.T01:CDS
TCAATTTGAAGGTCATGATG+TGG 0.591281 1:-69689220 MsG0180003886.01.T01:CDS
AGAGACTAGAGGCGTGCCAG+GGG 0.596357 1:-69685625 MsG0180003886.01.T01:CDS
AGTCGGAGTGTTTGAAACAC+AGG 0.597480 1:-69686483 MsG0180003886.01.T01:intron
CCCCAATAACAGCATCTGCA+AGG 0.605594 1:+69685706 None:intergenic
GAGATACAAGGGGAACCCGC+AGG 0.608403 1:-69686569 MsG0180003886.01.T01:CDS
GCATAAACAGGAGCATTAGT+GGG 0.612702 1:+69684721 None:intergenic
AACAAACCCTCCACAGCAGG+TGG 0.620438 1:+69687508 None:intergenic
TAATACTTGCTCCACTAGCA+CGG 0.621027 1:+69685655 None:intergenic
GGAACCCGCAGGAGTTCACA+AGG 0.625857 1:-69686558 MsG0180003886.01.T01:CDS
GAGCCTGCAGATACCGCAGA+AGG 0.629377 1:-69687451 MsG0180003886.01.T01:intron
GCTCTTTCTGCGTTTCCTGG+AGG 0.630869 1:+69688906 None:intergenic
TCATAAACAAGTTGCCAATG+TGG 0.633046 1:-69687479 MsG0180003886.01.T01:CDS
GCTCGAGTTAAAATTCTCGA+TGG 0.633836 1:-69688930 MsG0180003886.01.T01:CDS
ATGATCCTGTGCCTGTGCAG+CGG 0.636650 1:+69684778 None:intergenic
TGCAGGCTCACGGACCACAT+TGG 0.636975 1:+69687465 None:intergenic
ATTACAATTCAAGAGACTAG+AGG 0.638499 1:-69685636 MsG0180003886.01.T01:CDS
AACAGCATCTGCAAGGACAG+CGG 0.639138 1:+69685713 None:intergenic
TGAGCAGGAAACCCTTGAGG+AGG 0.664088 1:+69686060 None:intergenic
GACTGAAGAGCATACCAATG+AGG 0.668823 1:-69689159 MsG0180003886.01.T01:CDS
ATGCACCTCACCAACCTTGG+GGG 0.670429 1:-69686086 MsG0180003886.01.T01:CDS
TATGCACCTCACCAACCTTG+GGG 0.671958 1:-69686087 MsG0180003886.01.T01:CDS
CCGTGAGCAGGAAACCCTTG+AGG 0.675298 1:+69686057 None:intergenic
CACAGGCACAGGATCATGGG+AGG 0.682467 1:-69684772 MsG0180003886.01.T01:CDS
ACAGAACCATAGTCTGCAGG+AGG 0.702885 1:+69684667 None:intergenic
CAAACACTCCGACTATGCTG+CGG 0.705828 1:+69686492 None:intergenic
ATGGGAGGAACAGTTAACCA+AGG 0.711516 1:-69684757 MsG0180003886.01.T01:CDS
TAGTATTGTTGAGATACAAG+GGG 0.718739 1:-69686579 MsG0180003886.01.T01:CDS
GAGATGACTGTTGAAATAAG+CGG 0.746102 1:-69685603 MsG0180003886.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATATAATAAGGAAA+CGG - Chr1:69685148-69685167 MsG0180003886.01.T01:intron 10.0%
!!! TATTTTTTAGTTTTTTTTGA+AGG - Chr1:69686313-69686332 MsG0180003886.01.T01:intron 10.0%
!!! TTTTAATAATTTCAAATCTT+TGG + Chr1:69685667-69685686 None:intergenic 10.0%
!! AAAAAAAAACTAACTTTCTA+AGG + Chr1:69686564-69686583 None:intergenic 15.0%
!! AAAAAATAAATGAGTTAAGT+CGG + Chr1:69687269-69687288 None:intergenic 15.0%
!! AAACCTTATCTTATAAAAAT+AGG - Chr1:69688562-69688581 MsG0180003886.01.T01:intron 15.0%
!! ATTTCATATATCCTTATAAA+AGG - Chr1:69686026-69686045 MsG0180003886.01.T01:intron 15.0%
!! CAAATTGTTATATAAATTAG+TGG - Chr1:69688590-69688609 MsG0180003886.01.T01:intron 15.0%
!! GAAATAATAAATAATGAAAC+AGG - Chr1:69685227-69685246 MsG0180003886.01.T01:intron 15.0%
!! TTAATAATGTCAGAAAATTA+CGG + Chr1:69686368-69686387 None:intergenic 15.0%
!!! AATTTGAAATTGAAACTAAA+TGG - Chr1:69685065-69685084 MsG0180003886.01.T01:intron 15.0%
!!! ATTTTTTAAATGTTAACTTG+TGG - Chr1:69689127-69689146 MsG0180003886.01.T01:intron 15.0%
!!! TAATTCATTTTCTTTTGTAT+AGG - Chr1:69687839-69687858 MsG0180003886.01.T01:intron 15.0%
!!! TTATTTTTTTTATGTAGCTA+GGG - Chr1:69684734-69684753 MsG0180003886.01.T01:CDS 15.0%
!!! TTTCAAAATTTTTATTCTAG+AGG - Chr1:69686417-69686436 MsG0180003886.01.T01:intron 15.0%
!!! TTTGTTTATTTTGAGTTATA+TGG - Chr1:69687394-69687413 MsG0180003886.01.T01:intron 15.0%
!! AAAAAAAACTAACTTTCCAA+AGG + Chr1:69686859-69686878 None:intergenic 20.0%
!! AAAAATAAATGAGTTAAGTC+GGG + Chr1:69687268-69687287 None:intergenic 20.0%
!! AACTATTTAGTGCTTTAATA+TGG - Chr1:69685005-69685024 MsG0180003886.01.T01:intron 20.0%
!! AATATTTAGCAAACATGTAT+AGG - Chr1:69686898-69686917 MsG0180003886.01.T01:intron 20.0%
!! AGAAATGGAAATAAAGTTAA+AGG - Chr1:69685761-69685780 MsG0180003886.01.T01:intron 20.0%
!! CAATCATTAACTAGTATATA+TGG + Chr1:69688252-69688271 None:intergenic 20.0%
!! CTTTCAAAAATTTATTCTAG+AGG - Chr1:69686714-69686733 MsG0180003886.01.T01:intron 20.0%
!! GCTAATGAAAATATAATAGA+AGG - Chr1:69684911-69684930 MsG0180003886.01.T01:intron 20.0%
!! TAAATTTAGCAAACATGTAT+AGG - Chr1:69686599-69686618 MsG0180003886.01.T01:CDS 20.0%
!! TAATAACTATCATAGTTATG+TGG + Chr1:69687612-69687631 None:intergenic 20.0%
!! TAATTCAATCATCAAAAACT+AGG - Chr1:69684889-69684908 MsG0180003886.01.T01:intron 20.0%
!! TATATCCTTATAAAAGGTAA+TGG - Chr1:69686032-69686051 MsG0180003886.01.T01:intron 20.0%
!! TATTCATATTCATAGAAAAC+TGG - Chr1:69685693-69685712 MsG0180003886.01.T01:CDS 20.0%
!! TATTCTTATTATTATGCCTT+TGG - Chr1:69686840-69686859 MsG0180003886.01.T01:intron 20.0%
!! TTAATAATGTCAGAAAATTG+CGG + Chr1:69686662-69686681 None:intergenic 20.0%
!! TTTCTGACATTATTAAACAT+GGG - Chr1:69686372-69686391 MsG0180003886.01.T01:intron 20.0%
!!! ACAAACAATTTAAAACTACT+GGG + Chr1:69688293-69688312 None:intergenic 20.0%
!!! ATACATGTTTGCTAAATATT+AGG + Chr1:69686898-69686917 None:intergenic 20.0%
!!! ATACATGTTTGCTAAATTTA+GGG + Chr1:69686599-69686618 None:intergenic 20.0%
!!! ATCTTGAAAGATTTTTATAG+TGG + Chr1:69686243-69686262 None:intergenic 20.0%
!!! ATTTTCTGACATTATTAAAC+AGG - Chr1:69686370-69686389 MsG0180003886.01.T01:intron 20.0%
!!! CTGGATTATGTAATTTTAAT+AGG + Chr1:69685197-69685216 None:intergenic 20.0%
!!! GATCTGTTTTCAATATTAAA+AGG - Chr1:69687139-69687158 MsG0180003886.01.T01:intron 20.0%
!!! GTTATTTTTTTTATGTAGCT+AGG - Chr1:69684733-69684752 MsG0180003886.01.T01:CDS 20.0%
!!! TACATGTTTGCTAAATATTA+GGG + Chr1:69686897-69686916 None:intergenic 20.0%
!!! TAGATTTATGTTTGCATTTT+TGG - Chr1:69688201-69688220 MsG0180003886.01.T01:intron 20.0%
!!! TAGCCTATTTTTATAAGATA+AGG + Chr1:69688568-69688587 None:intergenic 20.0%
!!! TATACATGTTTGCTAAATTT+AGG + Chr1:69686600-69686619 None:intergenic 20.0%
!!! TTTCCAAACAAGATTTTTTA+CGG - Chr1:69689162-69689181 MsG0180003886.01.T01:CDS 20.0%
!!! TTTTCTGACATTATTAAACA+GGG - Chr1:69686371-69686390 MsG0180003886.01.T01:intron 20.0%
!!! TTTTCTGACATTATTAAACA+TGG - Chr1:69686371-69686390 MsG0180003886.01.T01:intron 20.0%
! AAAATCTTTCAAGATTCTAC+AGG - Chr1:69686248-69686267 MsG0180003886.01.T01:intron 25.0%
! AAGGAATTGAAATAAAGAAG+TGG - Chr1:69684532-69684551 MsG0180003886.01.T01:three_prime_UTR 25.0%
! AATACTATTGCTAAAGAGTA+AGG - Chr1:69685120-69685139 MsG0180003886.01.T01:intron 25.0%
! AATAGTATCCAAATTAATGC+AGG + Chr1:69689066-69689085 None:intergenic 25.0%
! AATCCATTAAATCTTAGTTC+CGG - Chr1:69689022-69689041 MsG0180003886.01.T01:intron 25.0%
! ATACTAGTTAATGATTGTCT+TGG - Chr1:69688255-69688274 MsG0180003886.01.T01:intron 25.0%
! ATAGTATTGTTGAGATACAA+GGG - Chr1:69687015-69687034 MsG0180003886.01.T01:intron 25.0%
! ATATCTTCAACTACAAATGA+TGG + Chr1:69688372-69688391 None:intergenic 25.0%
! CAAATATACTTCAATGTCAT+CGG + Chr1:69688433-69688452 None:intergenic 25.0%
! CATAGTTTATGTTGTGTTAT+GGG + Chr1:69684843-69684862 None:intergenic 25.0%
! CTGTATACATTACATTATTC+AGG + Chr1:69686965-69686984 None:intergenic 25.0%
! GAAATCCTATCTAAGAATAA+AGG - Chr1:69688699-69688718 MsG0180003886.01.T01:intron 25.0%
! GAAATGGAAATTAAGTGAAA+AGG - Chr1:69685829-69685848 MsG0180003886.01.T01:intron 25.0%
! GCAGATTAATATTATCTTGT+AGG - Chr1:69687171-69687190 MsG0180003886.01.T01:intron 25.0%
! GTAAAACTTAATTGTCGTTA+AGG - Chr1:69684863-69684882 MsG0180003886.01.T01:intron 25.0%
! GTTATATAAATTAGTGGCAA+AGG - Chr1:69688596-69688615 MsG0180003886.01.T01:intron 25.0%
! TAATTTGGATACTATTGGAT+AGG - Chr1:69689070-69689089 MsG0180003886.01.T01:intron 25.0%
! TTAATATGGAAGAAATCTAC+TGG - Chr1:69685019-69685038 MsG0180003886.01.T01:intron 25.0%
! TTCTGACATTATTAAACATG+GGG - Chr1:69686373-69686392 MsG0180003886.01.T01:intron 25.0%
! TTGAGGATATGATAATTAGT+CGG - Chr1:69689094-69689113 MsG0180003886.01.T01:intron 25.0%
! TTTCTGACATTATTAAACAG+GGG - Chr1:69686666-69686685 MsG0180003886.01.T01:intron 25.0%
!! AGAAACCATTACCTTTTATA+AGG + Chr1:69686040-69686059 None:intergenic 25.0%
!! ATTACATTCAATTCTAGTTG+AGG - Chr1:69688980-69688999 MsG0180003886.01.T01:CDS 25.0%
!! CAATATTAAAAGGCATGAAT+GGG - Chr1:69687149-69687168 MsG0180003886.01.T01:intron 25.0%
!! CACAAACAATTTAAAACTAC+TGG + Chr1:69688294-69688313 None:intergenic 25.0%
!! CTTTTATTGAGATAACACAA+TGG - Chr1:69685272-69685291 MsG0180003886.01.T01:intron 25.0%
!! CTTTTGTTGAAGTATGTTTA+TGG - Chr1:69684808-69684827 MsG0180003886.01.T01:CDS 25.0%
!! GTTCAATTTTATATGTCTAC+TGG - Chr1:69688321-69688340 MsG0180003886.01.T01:intron 25.0%
!! TATTATTTCTTGTGTTTAGC+TGG + Chr1:69685216-69685235 None:intergenic 25.0%
!! TCAATATTAAAAGGCATGAA+TGG - Chr1:69687148-69687167 MsG0180003886.01.T01:intron 25.0%
!! TGCATTAATTTGGATACTAT+TGG - Chr1:69689065-69689084 MsG0180003886.01.T01:intron 25.0%
!!! GTTCAGGTATTTTATTTTGA+AGG - Chr1:69688049-69688068 MsG0180003886.01.T01:intron 25.0%
!!! TATGTTTTGCATTTTGAGAA+GGG - Chr1:69687288-69687307 MsG0180003886.01.T01:intron 25.0%
!!! TTATGTTTTGCATTTTGAGA+AGG - Chr1:69687287-69687306 MsG0180003886.01.T01:intron 25.0%
!!! TTCCAAACAAGATTTTTTAC+GGG - Chr1:69689163-69689182 MsG0180003886.01.T01:CDS 25.0%
AAATTGATCTTCAGGAAGAT+TGG + Chr1:69684362-69684381 None:intergenic 30.0%
ACGTCATGTTATCATAAATC+AGG + Chr1:69686630-69686649 None:intergenic 30.0%
AGAAAATTACTGAAGAGACT+AGG - Chr1:69684642-69684661 MsG0180003886.01.T01:CDS 30.0%
ATATTCTCAATAGCCATAGT+TGG + Chr1:69688962-69688981 None:intergenic 30.0%
ATATTGAGCAATTCAATTCC+TGG - Chr1:69685617-69685636 MsG0180003886.01.T01:CDS 30.0%
ATGCACCTTTATTCTTAGAT+AGG + Chr1:69688707-69688726 None:intergenic 30.0%
ATTACAATTCAAGAGACTAG+AGG - Chr1:69687959-69687978 MsG0180003886.01.T01:intron 30.0%
CCATAACACAACATAAACTA+TGG - Chr1:69684841-69684860 MsG0180003886.01.T01:intron 30.0%
CCATAGTTTATGTTGTGTTA+TGG + Chr1:69684844-69684863 None:intergenic 30.0%
GAAAATTACTGAAGAGACTA+GGG - Chr1:69684643-69684662 MsG0180003886.01.T01:CDS 30.0%
GATAGTATTGTTGAGATACA+AGG - Chr1:69687014-69687033 MsG0180003886.01.T01:intron 30.0%
GCATATATGAATGAACAAAG+TGG - Chr1:69685312-69685331 MsG0180003886.01.T01:intron 30.0%
GTGTAAATTACACTGTGTAA+TGG - Chr1:69687331-69687350 MsG0180003886.01.T01:intron 30.0%
TAACTATCATAGTTATGTGG+AGG + Chr1:69687609-69687628 None:intergenic 30.0%
TAGTATTGTTGAGATACAAG+GGG - Chr1:69687016-69687035 MsG0180003886.01.T01:intron 30.0%
TGAAACTAAATGGTTCATTC+AGG - Chr1:69685075-69685094 MsG0180003886.01.T01:intron 30.0%
TGAGGATATGATAATTAGTC+GGG - Chr1:69689095-69689114 MsG0180003886.01.T01:intron 30.0%
TGGAGTAACTCAATAATGAT+AGG + Chr1:69685647-69685666 None:intergenic 30.0%
TTATCTTGTAGGTTAGTGAT+AGG - Chr1:69687182-69687201 MsG0180003886.01.T01:intron 30.0%
TTGGATTATTCTTGTATGTG+TGG - Chr1:69688220-69688239 MsG0180003886.01.T01:intron 30.0%
! AATCATGTGACTGAGAATTT+TGG - Chr1:69684476-69684495 MsG0180003886.01.T01:three_prime_UTR 30.0%
! AGGTCTTTTTATCTGTGTAT+TGG - Chr1:69686437-69686456 MsG0180003886.01.T01:intron 30.0%
! GATAGCATTGAATAATGAGA+GGG - Chr1:69688404-69688423 MsG0180003886.01.T01:intron 30.0%
! TGATAGCATTGAATAATGAG+AGG - Chr1:69688403-69688422 MsG0180003886.01.T01:intron 30.0%
!! ATGTTTTGCATTTTGAGAAG+GGG - Chr1:69687289-69687308 MsG0180003886.01.T01:intron 30.0%
!!! ATAGTTTGTTGTGCAGATTT+TGG - Chr1:69685400-69685419 MsG0180003886.01.T01:intron 30.0%
AATATACGCATTCTTGGTTC+AGG - Chr1:69686275-69686294 MsG0180003886.01.T01:intron 35.0%
AATGAGGAACAACATGATGA+AGG - Chr1:69684452-69684471 MsG0180003886.01.T01:three_prime_UTR 35.0%
ACGCTAAAACTGATGAATTC+AGG - Chr1:69685559-69685578 MsG0180003886.01.T01:CDS 35.0%
AGATGCATCGTTCAAAGAAA+TGG - Chr1:69685746-69685765 MsG0180003886.01.T01:intron 35.0%
ATGAGGAACAACATGATGAA+GGG - Chr1:69684453-69684472 MsG0180003886.01.T01:three_prime_UTR 35.0%
ATTGAAATAAAGAAGTGGCC+TGG - Chr1:69684537-69684556 MsG0180003886.01.T01:three_prime_UTR 35.0%
ATTGACAAGAACATGCATCA+GGG - Chr1:69687654-69687673 MsG0180003886.01.T01:intron 35.0%
CGCTAAAACTGATGAATTCA+GGG - Chr1:69685560-69685579 MsG0180003886.01.T01:CDS 35.0%
CTATCTGATGCAGAATTTCA+TGG - Chr1:69688773-69688792 MsG0180003886.01.T01:intron 35.0%
CTGATTGAATTCTCTGTGAT+CGG - Chr1:69688172-69688191 MsG0180003886.01.T01:intron 35.0%
CTTCCTGAAGATCAATTTGA+AGG - Chr1:69684364-69684383 MsG0180003886.01.T01:three_prime_UTR 35.0%
GAACCGGAACTAAGATTTAA+TGG + Chr1:69689028-69689047 None:intergenic 35.0%
GACAACTCAAATACAAGAAC+CGG + Chr1:69689044-69689063 None:intergenic 35.0%
GACCCGTAAAAAATCTTGTT+TGG + Chr1:69689168-69689187 None:intergenic 35.0%
GAGATGACTGTTGAAATAAG+CGG - Chr1:69687992-69688011 MsG0180003886.01.T01:intron 35.0%
GATACTATTGGATAGGTTTG+AGG - Chr1:69689077-69689096 MsG0180003886.01.T01:intron 35.0%
GCTAGTTCAATGAACAGAAA+TGG - Chr1:69685813-69685832 MsG0180003886.01.T01:intron 35.0%
GGGTTTATTCATAAGCATGA+TGG + Chr1:69684963-69684982 None:intergenic 35.0%
GGTTCATTCAGGATAAAACA+TGG - Chr1:69685086-69685105 MsG0180003886.01.T01:intron 35.0%
TATGTAGCTAGGGATAATCT+TGG - Chr1:69684744-69684763 MsG0180003886.01.T01:CDS 35.0%
TCAATTTGAAGGTCATGATG+TGG - Chr1:69684375-69684394 MsG0180003886.01.T01:three_prime_UTR 35.0%
TCATAAACAAGTTGCCAATG+TGG - Chr1:69686116-69686135 MsG0180003886.01.T01:CDS 35.0%
TGACCTTCAAATTGATCTTC+AGG + Chr1:69684370-69684389 None:intergenic 35.0%
TGAGTTGTCCTGCATTAATT+TGG - Chr1:69689055-69689074 MsG0180003886.01.T01:intron 35.0%
TGATGCATGTTCTTGTCAAT+GGG + Chr1:69687654-69687673 None:intergenic 35.0%
TGGATTGTTTAAAAAACGCG+AGG + Chr1:69689008-69689027 None:intergenic 35.0%
TGTTTATGCATCTCCACAAT+CGG - Chr1:69688888-69688907 MsG0180003886.01.T01:intron 35.0%
TTCATCATGTTGTTCCTCAT+TGG + Chr1:69684453-69684472 None:intergenic 35.0%
TTGAAATAAAGAAGTGGCCT+GGG - Chr1:69684538-69684557 MsG0180003886.01.T01:three_prime_UTR 35.0%
! AGAAGTCAAGATGATGATGA+TGG + Chr1:69687818-69687837 None:intergenic 35.0%
! ATCTTGTTTGGAAACATGCA+AGG + Chr1:69689156-69689175 None:intergenic 35.0%
! TCACACACAGTTAGATTTTC+TGG - Chr1:69685942-69685961 MsG0180003886.01.T01:intron 35.0%
! TCTTTGGGAATACATTCTTC+CGG - Chr1:69687705-69687724 MsG0180003886.01.T01:intron 35.0%
!! AACTTTAGAACTTGGTCGAT+TGG - Chr1:69685450-69685469 MsG0180003886.01.T01:intron 35.0%
!! TGTTTTGCATTTTGAGAAGG+GGG - Chr1:69687290-69687309 MsG0180003886.01.T01:intron 35.0%
!!! ACAAGATTTTTTACGGGTCT+TGG - Chr1:69689169-69689188 MsG0180003886.01.T01:CDS 35.0%
!!! CAAGATTTTTTACGGGTCTT+GGG - Chr1:69689170-69689189 MsG0180003886.01.T01:CDS 35.0%
AAAATACCTGAACCAGCTGT+TGG + Chr1:69688042-69688061 None:intergenic 40.0%
AAATACCTGAACCAGCTGTT+GGG + Chr1:69688041-69688060 None:intergenic 40.0%
AAGTATTACGAGGCTTCTAG+TGG - Chr1:69686178-69686197 MsG0180003886.01.T01:intron 40.0%
ACTAGAAGCCTCGTAATACT+TGG + Chr1:69686179-69686198 None:intergenic 40.0%
AGTATTCAGAAACACCGTGT+AGG + Chr1:69686006-69686025 None:intergenic 40.0%
ATAACACAATGGATGTGTGC+AGG - Chr1:69685283-69685302 MsG0180003886.01.T01:intron 40.0%
ATCCTGAAAACATTCTCACC+AGG + Chr1:69684567-69684586 None:intergenic 40.0%
CAAAAGGTTGGCAGTATCAT+TGG - Chr1:69684599-69684618 MsG0180003886.01.T01:three_prime_UTR 40.0%
CAGAATGTGAAATGGTAGGT+TGG - Chr1:69688533-69688552 MsG0180003886.01.T01:intron 40.0%
CATCGACATGCGAAAAGAAA+AGG + Chr1:69688478-69688497 None:intergenic 40.0%
CATTGACAAGAACATGCATC+AGG - Chr1:69687653-69687672 MsG0180003886.01.T01:intron 40.0%
CTAGAAGCCTCGTAATACTT+GGG + Chr1:69686178-69686197 None:intergenic 40.0%
CTATCATAGTTATGTGGAGG+TGG + Chr1:69687606-69687625 None:intergenic 40.0%
CTGATGCATGTTCTTGTCAA+TGG + Chr1:69687655-69687674 None:intergenic 40.0%
GAAACGGTGATCAGTTATCA+AGG - Chr1:69685164-69685183 MsG0180003886.01.T01:intron 40.0%
GATTGTGGAGATGCATAAAC+AGG + Chr1:69688889-69688908 None:intergenic 40.0%
GCTCGAGTTAAAATTCTCGA+TGG - Chr1:69684665-69684684 MsG0180003886.01.T01:CDS 40.0%
GGAAGAATGTATTCCCAAAG+AGG + Chr1:69687706-69687725 None:intergenic 40.0%
GGTACAGAATGTGAAATGGT+AGG - Chr1:69688529-69688548 MsG0180003886.01.T01:intron 40.0%
GGTTGCAATATACGCATTCT+TGG - Chr1:69686269-69686288 MsG0180003886.01.T01:intron 40.0%
GTAGGTTAGTGATAGGACTA+GGG - Chr1:69687189-69687208 MsG0180003886.01.T01:intron 40.0%
GTTTATGCATCTCCACAATC+GGG - Chr1:69688889-69688908 MsG0180003886.01.T01:intron 40.0%
TAAATACAGTGCACTGAGAG+TGG + Chr1:69686517-69686536 None:intergenic 40.0%
TAACTGATGCACATGTTACC+AGG - Chr1:69686478-69686497 MsG0180003886.01.T01:intron 40.0%
TAATACTTGCTCCACTAGCA+CGG + Chr1:69687943-69687962 None:intergenic 40.0%
TATACAGAACCATAGTCTGC+AGG + Chr1:69688934-69688953 None:intergenic 40.0%
TCCTTGCAGATGCTGTTATT+GGG - Chr1:69687888-69687907 MsG0180003886.01.T01:intron 40.0%
TGAAGGAAAGAGTTTGAGTG+TGG + Chr1:69685483-69685502 None:intergenic 40.0%
TGGGATAGGAATTATAGCCT+TGG + Chr1:69688858-69688877 None:intergenic 40.0%
TGTAGGTTAGTGATAGGACT+AGG - Chr1:69687188-69687207 MsG0180003886.01.T01:intron 40.0%
TTTCCCTGCAACTTGAACTT+TGG + Chr1:69685353-69685372 None:intergenic 40.0%
! CTCAACAAGATAGAGCACTA+GGG + Chr1:69684983-69685002 None:intergenic 40.0%
! GAGAGGTACAGAATGTGAAA+TGG - Chr1:69688525-69688544 MsG0180003886.01.T01:intron 40.0%
! GCAGACTATGGTTCTGTATA+CGG - Chr1:69688934-69688953 MsG0180003886.01.T01:CDS 40.0%
! GGACTGGAAATCATTTTAGG+TGG - Chr1:69687213-69687232 MsG0180003886.01.T01:intron 40.0%
! TTCTGGTTACCTCGAATATC+TGG + Chr1:69687488-69687507 None:intergenic 40.0%
!! AAAGCCTGCTATTTCCTACA+CGG - Chr1:69685989-69686008 MsG0180003886.01.T01:intron 40.0%
!! AAATATTAGGGCATTGCTCG+AGG + Chr1:69686885-69686904 None:intergenic 40.0%
!! GACCAAGTTCTAAAGTTACC+AGG + Chr1:69685447-69685466 None:intergenic 40.0%
!! GCATAAACAGGAGCATTAGT+GGG + Chr1:69688877-69688896 None:intergenic 40.0%
!! GTGAGAATGTTTTCAGGATG+TGG - Chr1:69684568-69684587 MsG0180003886.01.T01:three_prime_UTR 40.0%
!! GTTTTAGCGTACTCAGTATG+TGG + Chr1:69685549-69685568 None:intergenic 40.0%
!! TAAATTTAGGGCATTGCTCG+AGG + Chr1:69686587-69686606 None:intergenic 40.0%
!! TCAATAATGATAGGAGTGCC+AGG + Chr1:69685638-69685657 None:intergenic 40.0%
!! TGACTGCAAGTGTGTTTTGA+AGG + Chr1:69685500-69685519 None:intergenic 40.0%
!! TGCATAAACAGGAGCATTAG+TGG + Chr1:69688878-69688897 None:intergenic 40.0%
!! TGCCTGGTAACTTTAGAACT+TGG - Chr1:69685442-69685461 MsG0180003886.01.T01:intron 40.0%
!!! GGTGGACTGGAAATCATTTT+AGG - Chr1:69687210-69687229 MsG0180003886.01.T01:intron 40.0%
!!! GTTTGTTGTGCAGATTTTGG+TGG - Chr1:69685403-69685422 MsG0180003886.01.T01:intron 40.0%
AAAATTCTCGATGGACCTCC+AGG - Chr1:69684674-69684693 MsG0180003886.01.T01:CDS 45.0%
AAATAAAGAAGTGGCCTGGG+TGG - Chr1:69684541-69684560 MsG0180003886.01.T01:three_prime_UTR 45.0%
AACACCGTGTAGGAAATAGC+AGG + Chr1:69685996-69686015 None:intergenic 45.0%
AATATGCACCTCACCAACCT+TGG - Chr1:69687506-69687525 MsG0180003886.01.T01:CDS 45.0%
AATCCCGAGCATAAGAGAAG+AGG + Chr1:69687357-69687376 None:intergenic 45.0%
ACTCAAGCAGGAAGCTTGAT+TGG - Chr1:69686206-69686225 MsG0180003886.01.T01:intron 45.0%
ACTCCATCTACGCAAGTTCT+TGG - Chr1:69687076-69687095 MsG0180003886.01.T01:intron 45.0%
AGATGAAAGCCTCTCTTGAG+AGG - Chr1:69688508-69688527 MsG0180003886.01.T01:intron 45.0%
AGGTGGCATATACTGAGGAT+TGG + Chr1:69687589-69687608 None:intergenic 45.0%
ATATGCACCTCACCAACCTT+GGG - Chr1:69687507-69687526 MsG0180003886.01.T01:CDS 45.0%
ATGCAACGACCAGATATTCG+AGG - Chr1:69687476-69687495 MsG0180003886.01.T01:CDS 45.0%
ATGCTCTTCAGTCAGAGCAT+TGG + Chr1:69684429-69684448 None:intergenic 45.0%
ATGGCCTCTTCTCTTATGCT+CGG - Chr1:69687350-69687369 MsG0180003886.01.T01:intron 45.0%
ATGGGAGGAACAGTTAACCA+AGG - Chr1:69688838-69688857 MsG0180003886.01.T01:intron 45.0%
ATTTCAACAGTCATCTCCCC+TGG + Chr1:69687989-69688008 None:intergenic 45.0%
CAAATCAGTGCATCTGAGAG+TGG + Chr1:69686812-69686831 None:intergenic 45.0%
CAACCAAGAACTTGCGTAGA+TGG + Chr1:69687082-69687101 None:intergenic 45.0%
CATTCTGTACCTCTCAAGAG+AGG + Chr1:69688520-69688539 None:intergenic 45.0%
CCTAGTGCTCTATCTTGTTG+AGG - Chr1:69684981-69685000 MsG0180003886.01.T01:intron 45.0%
CCTTGCAGATGCTGTTATTG+GGG - Chr1:69687889-69687908 MsG0180003886.01.T01:intron 45.0%
CTCAAGCAGGAAGCTTGATT+GGG - Chr1:69686207-69686226 MsG0180003886.01.T01:intron 45.0%
GCTCTCTGCAATGATCAGTT+GGG + Chr1:69687775-69687794 None:intergenic 45.0%
GTCCTTGCAGATGCTGTTAT+TGG - Chr1:69687887-69687906 MsG0180003886.01.T01:intron 45.0%
GTGATCAACGAGTGTGTCTT+TGG - Chr1:69685900-69685919 MsG0180003886.01.T01:intron 45.0%
GTTTCTGCAAAAGAAGAGCC+AGG - Chr1:69686054-69686073 MsG0180003886.01.T01:intron 45.0%
TACACAAGGGATGCCTCTTT+GGG - Chr1:69687690-69687709 MsG0180003886.01.T01:intron 45.0%
TCATCCCGTAGAGCGAAAAT+TGG + Chr1:69686996-69687015 None:intergenic 45.0%
TCTGTATACGGCACCAACTA+TGG - Chr1:69688946-69688965 MsG0180003886.01.T01:CDS 45.0%
TGCATGTTCTTGTCAATGGG+AGG + Chr1:69687651-69687670 None:intergenic 45.0%
TGCTCTCTGCAATGATCAGT+TGG + Chr1:69687776-69687795 None:intergenic 45.0%
TGGCATATACTGAGGATTGG+CGG + Chr1:69687586-69687605 None:intergenic 45.0%
TTGGGAATACATTCTTCCGG+TGG - Chr1:69687708-69687727 MsG0180003886.01.T01:intron 45.0%
! ACCTGCCAATTTTCGCTCTA+CGG - Chr1:69686988-69687007 MsG0180003886.01.T01:intron 45.0%
! AGTCGGAGTGTTTGAAACAC+AGG - Chr1:69687112-69687131 MsG0180003886.01.T01:intron 45.0%
! ATACTGCCAACCTTTTGTGC+AGG + Chr1:69684596-69684615 None:intergenic 45.0%
! CAAGAAGTTTTCACTGTGCC+TGG - Chr1:69685426-69685445 MsG0180003886.01.T01:intron 45.0%
! CCTCAACAAGATAGAGCACT+AGG + Chr1:69684984-69685003 None:intergenic 45.0%
! GACTGAAGAGCATACCAATG+AGG - Chr1:69684436-69684455 MsG0180003886.01.T01:three_prime_UTR 45.0%
!! AACAGGAGCATTAGTGGGAT+AGG + Chr1:69688872-69688891 None:intergenic 45.0%
!! AGAGCCAAAGTTCAAGTTGC+AGG - Chr1:69685346-69685365 MsG0180003886.01.T01:intron 45.0%
!! GAGCCAAAGTTCAAGTTGCA+GGG - Chr1:69685347-69685366 MsG0180003886.01.T01:intron 45.0%
!! GTGAAATGGTAGGTTGGTCT+TGG - Chr1:69688539-69688558 MsG0180003886.01.T01:intron 45.0%
!! TGCTGTGGAGGGTTTGTTAA+GGG - Chr1:69686092-69686111 MsG0180003886.01.T01:CDS 45.0%
!!! ATTTTGGCTCGCGGAAAAGA+AGG - Chr1:69684492-69684511 MsG0180003886.01.T01:three_prime_UTR 45.0%
!!! TGACTGAGAATTTTGGCTCG+CGG - Chr1:69684483-69684502 MsG0180003886.01.T01:three_prime_UTR 45.0%
!! GAATTATATATTATATAATA+AGG - Chr1:69685142-69685161 MsG0180003886.01.T01:intron 5.0%
AACAGCATCTGCAAGGACAG+CGG + Chr1:69687885-69687904 None:intergenic 50.0%
AACTGCCTTGTGAACTCCTG+CGG + Chr1:69687045-69687064 None:intergenic 50.0%
ACAGAACCATAGTCTGCAGG+AGG + Chr1:69688931-69688950 None:intergenic 50.0%
ACAGCAATCTGGTGGGACTA+AGG - Chr1:69687737-69687756 MsG0180003886.01.T01:intron 50.0%
ACTGCTCTTTCTGCGTTTCC+TGG + Chr1:69684695-69684714 None:intergenic 50.0%
AGATACCGCAGAAGGTGAAG+GGG - Chr1:69686152-69686171 MsG0180003886.01.T01:intron 50.0%
AGGAAGCTTGATTGGGAAGC+AGG - Chr1:69686214-69686233 MsG0180003886.01.T01:intron 50.0%
ATACAGTGCACTGAGAGTGG+CGG + Chr1:69686514-69686533 None:intergenic 50.0%
ATCAGTGCATCTGAGAGTGG+CGG + Chr1:69686809-69686828 None:intergenic 50.0%
CAAACACTCCGACTATGCTG+CGG + Chr1:69687106-69687125 None:intergenic 50.0%
CAGATACCGCAGAAGGTGAA+GGG - Chr1:69686151-69686170 MsG0180003886.01.T01:intron 50.0%
CCCCAATAACAGCATCTGCA+AGG + Chr1:69687892-69687911 None:intergenic 50.0%
CGGTACCGCTTCACAAATAC+AGG - Chr1:69688012-69688031 MsG0180003886.01.T01:intron 50.0%
CTACACAAGGGATGCCTCTT+TGG - Chr1:69687689-69687708 MsG0180003886.01.T01:intron 50.0%
CTAGTGGCTGATACTCAAGC+AGG - Chr1:69686194-69686213 MsG0180003886.01.T01:intron 50.0%
CTTAACAAACCCTCCACAGC+AGG + Chr1:69686093-69686112 None:intergenic 50.0%
GAAGCTTGATTGGGAAGCAG+GGG - Chr1:69686216-69686235 MsG0180003886.01.T01:intron 50.0%
GGAAGCTTGATTGGGAAGCA+GGG - Chr1:69686215-69686234 MsG0180003886.01.T01:intron 50.0%
GGATGTGGTTCCTGCACAAA+AGG - Chr1:69684583-69684602 MsG0180003886.01.T01:three_prime_UTR 50.0%
GGCAGTATCATTGGACGCAA+AGG - Chr1:69684608-69684627 MsG0180003886.01.T01:three_prime_UTR 50.0%
GGCTGCCTGTATTTGTGAAG+CGG + Chr1:69688020-69688039 None:intergenic 50.0%
GGTTAGTGATAGGACTAGGG+TGG - Chr1:69687192-69687211 MsG0180003886.01.T01:intron 50.0%
GTGGTTCCTGCACAAAAGGT+TGG - Chr1:69684587-69684606 MsG0180003886.01.T01:three_prime_UTR 50.0%
TATGCACCTCACCAACCTTG+GGG - Chr1:69687508-69687527 MsG0180003886.01.T01:CDS 50.0%
TGGCCTCTTCTCTTATGCTC+GGG - Chr1:69687351-69687370 MsG0180003886.01.T01:intron 50.0%
TGTGGAGGTGGCATATACTG+AGG + Chr1:69687594-69687613 None:intergenic 50.0%
TGTTCTTGTCAATGGGAGGC+AGG + Chr1:69687647-69687666 None:intergenic 50.0%
TTAGTCCCACCAGATTGCTG+TGG + Chr1:69687738-69687757 None:intergenic 50.0%
TTGGTTGACCGCAGCATAGT+CGG - Chr1:69687095-69687114 MsG0180003886.01.T01:intron 50.0%
! CCTGCCAATTTTCGCTCTAC+GGG - Chr1:69686989-69687008 MsG0180003886.01.T01:intron 50.0%
! GATGCTGTTATTGGGGCATC+AGG - Chr1:69687896-69687915 MsG0180003886.01.T01:intron 50.0%
! GGCCTGGTGAGAATGTTTTC+AGG - Chr1:69684562-69684581 MsG0180003886.01.T01:three_prime_UTR 50.0%
! GGTACTGGGGAAGATTCGAA+AGG - Chr1:69684513-69684532 MsG0180003886.01.T01:three_prime_UTR 50.0%
!! CAAAGAGGCATCCCTTGTGT+AGG + Chr1:69687691-69687710 None:intergenic 50.0%
!! CTCGCGGAAAAGAAGGTACT+GGG - Chr1:69684499-69684518 MsG0180003886.01.T01:three_prime_UTR 50.0%
!! CTGCTGTGGAGGGTTTGTTA+AGG - Chr1:69686091-69686110 MsG0180003886.01.T01:CDS 50.0%
!! GGTTGGTGAGGTGCATATTC+TGG + Chr1:69687505-69687524 None:intergenic 50.0%
!! TCGCGGAAAAGAAGGTACTG+GGG - Chr1:69684500-69684519 MsG0180003886.01.T01:three_prime_UTR 50.0%
AACAAACCCTCCACAGCAGG+TGG + Chr1:69686090-69686109 None:intergenic 55.0%
AATACAGGCAGCCCAACAGC+TGG - Chr1:69688027-69688046 MsG0180003886.01.T01:intron 55.0%
ACAGCATCTGCAAGGACAGC+GGG + Chr1:69687884-69687903 None:intergenic 55.0%
ACTGCCTTGTGAACTCCTGC+GGG + Chr1:69687044-69687063 None:intergenic 55.0%
AGATTGCTGTGGCTGTCCAC+CGG + Chr1:69687727-69687746 None:intergenic 55.0%
AGCTACATTCGCCGTGCTAG+TGG - Chr1:69687929-69687948 MsG0180003886.01.T01:intron 55.0%
ATGATCCTGTGCCTGTGCAG+CGG + Chr1:69688820-69688839 None:intergenic 55.0%
ATGCACCTCACCAACCTTGG+GGG - Chr1:69687509-69687528 MsG0180003886.01.T01:CDS 55.0%
CATGCACCTCCTGCAGACTA+TGG - Chr1:69688922-69688941 MsG0180003886.01.T01:CDS 55.0%
CCCGTAGAGCGAAAATTGGC+AGG + Chr1:69686992-69687011 None:intergenic 55.0%
CCTCAAGGGTTTCCTGCTCA+CGG - Chr1:69687538-69687557 MsG0180003886.01.T01:CDS 55.0%
CTGCACAGGCACAGGATCAT+GGG - Chr1:69688820-69688839 MsG0180003886.01.T01:intron 55.0%
GAAGGGGCCCAAGTATTACG+AGG - Chr1:69686168-69686187 MsG0180003886.01.T01:intron 55.0%
GACAGCCACAGCAATCTGGT+GGG - Chr1:69687730-69687749 MsG0180003886.01.T01:intron 55.0%
GCAGATACCGCAGAAGGTGA+AGG - Chr1:69686150-69686169 MsG0180003886.01.T01:intron 55.0%
GCTCTTTCTGCGTTTCCTGG+AGG + Chr1:69684692-69684711 None:intergenic 55.0%
GGCTGAAGCTGCAAATGCTG+TGG - Chr1:69688794-69688813 MsG0180003886.01.T01:intron 55.0%
GTGATAGGACTAGGGTGGAC+TGG - Chr1:69687197-69687216 MsG0180003886.01.T01:intron 55.0%
TACAGTGCACTGAGAGTGGC+GGG + Chr1:69686513-69686532 None:intergenic 55.0%
TCACCTTCTGCGGTATCTGC+AGG + Chr1:69686150-69686169 None:intergenic 55.0%
TCAGTGCATCTGAGAGTGGC+GGG + Chr1:69686808-69686827 None:intergenic 55.0%
TCCACCACCTGCCTACACAA+GGG - Chr1:69687677-69687696 MsG0180003886.01.T01:intron 55.0%
TGAGCAGGAAACCCTTGAGG+AGG + Chr1:69687538-69687557 None:intergenic 55.0%
! AAGAGACTAGAGGCGTGCCA+GGG - Chr1:69687969-69687988 MsG0180003886.01.T01:intron 55.0%
! CATAGTCTGCAGGAGGTGCA+TGG + Chr1:69688924-69688943 None:intergenic 55.0%
! CTGAGGATTGGCGGAAAAGC+AGG + Chr1:69687577-69687596 None:intergenic 55.0%
! GCTCGCGGAAAAGAAGGTAC+TGG - Chr1:69684498-69684517 MsG0180003886.01.T01:three_prime_UTR 55.0%
!! AGTGGCGGGTTTAGTGATCC+TGG + Chr1:69686499-69686518 None:intergenic 55.0%
AAATGCTGTGGCCGCTGCAC+AGG - Chr1:69688806-69688825 MsG0180003886.01.T01:intron 60.0%
ACATTCTCACCAGGCCACCC+AGG + Chr1:69684558-69684577 None:intergenic 60.0%
ACCCTCCACAGCAGGTGGTA+TGG + Chr1:69686085-69686104 None:intergenic 60.0%
CAAGGGTTTCCTGCTCACGG+CGG - Chr1:69687541-69687560 MsG0180003886.01.T01:CDS 60.0%
CACAGGCACAGGATCATGGG+AGG - Chr1:69688823-69688842 MsG0180003886.01.T01:intron 60.0%
CCCATACCACCTGCTGTGGA+GGG - Chr1:69686081-69686100 MsG0180003886.01.T01:CDS 60.0%
CCCTCCACAGCAGGTGGTAT+GGG + Chr1:69686084-69686103 None:intergenic 60.0%
CCGTGAGCAGGAAACCCTTG+AGG + Chr1:69687541-69687560 None:intergenic 60.0%
CCTCCACAGCAGGTGGTATG+GGG + Chr1:69686083-69686102 None:intergenic 60.0%
CTGCGGTATCTGCAGGCTCA+CGG + Chr1:69686143-69686162 None:intergenic 60.0%
GAGATACAAGGGGAACCCGC+AGG - Chr1:69687026-69687045 MsG0180003886.01.T01:intron 60.0%
GAGCCTGCAGATACCGCAGA+AGG - Chr1:69686144-69686163 MsG0180003886.01.T01:intron 60.0%
GCAGGAAACCCTTGAGGAGG+AGG + Chr1:69687535-69687554 None:intergenic 60.0%
GCATCCCTTGTGTAGGCAGG+TGG + Chr1:69687684-69687703 None:intergenic 60.0%
GCTGCACAGGCACAGGATCA+TGG - Chr1:69688819-69688838 MsG0180003886.01.T01:intron 60.0%
GGAACCCGCAGGAGTTCACA+AGG - Chr1:69687037-69687056 MsG0180003886.01.T01:intron 60.0%
GGACAGCCACAGCAATCTGG+TGG - Chr1:69687729-69687748 MsG0180003886.01.T01:intron 60.0%
GGTGGACAGCCACAGCAATC+TGG - Chr1:69687726-69687745 MsG0180003886.01.T01:intron 60.0%
GTCCACCACCTGCCTACACA+AGG - Chr1:69687676-69687695 MsG0180003886.01.T01:intron 60.0%
TCAATGGGAGGCAGGTCAGC+AGG + Chr1:69687639-69687658 None:intergenic 60.0%
TCCCTTGTGTAGGCAGGTGG+TGG + Chr1:69687681-69687700 None:intergenic 60.0%
TGCAGGCTCACGGACCACAT+TGG + Chr1:69686133-69686152 None:intergenic 60.0%
TTGGGCCCCTTCACCTTCTG+CGG + Chr1:69686160-69686179 None:intergenic 60.0%
! AGAGACTAGAGGCGTGCCAG+GGG - Chr1:69687970-69687989 MsG0180003886.01.T01:intron 60.0%
! CAAGAGACTAGAGGCGTGCC+AGG - Chr1:69687968-69687987 MsG0180003886.01.T01:intron 60.0%
! GAGGCATCCCTTGTGTAGGC+AGG + Chr1:69687687-69687706 None:intergenic 60.0%
! TCTCCACAATCGGGTGCTGC+AGG - Chr1:69688898-69688917 MsG0180003886.01.T01:intron 60.0%
AAGAAGTGGCCTGGGTGGCC+TGG - Chr1:69684546-69684565 MsG0180003886.01.T01:three_prime_UTR 65.0%
ATGGGAGGCAGGTCAGCAGG+TGG + Chr1:69687636-69687655 None:intergenic 65.0%
CCCCATACCACCTGCTGTGG+AGG - Chr1:69686080-69686099 MsG0180003886.01.T01:CDS 65.0%
CTTGGGGGCCTCCTCCTCAA+GGG - Chr1:69687524-69687543 MsG0180003886.01.T01:CDS 65.0%
TCGCCCCATACCACCTGCTG+TGG - Chr1:69686077-69686096 MsG0180003886.01.T01:CDS 65.0%
TGGCCTGCAGCACCCGATTG+TGG + Chr1:69688904-69688923 None:intergenic 65.0%
TGGGAGGCAGGTCAGCAGGT+GGG + Chr1:69687635-69687654 None:intergenic 65.0%
TTTCCTGCTCACGGCGGTGG+TGG - Chr1:69687547-69687566 MsG0180003886.01.T01:CDS 65.0%
! GGCAGCCCAACAGCTGGTTC+AGG - Chr1:69688033-69688052 MsG0180003886.01.T01:intron 65.0%
CCTTGAGGAGGAGGCCCCCA+AGG + Chr1:69687526-69687545 None:intergenic 70.0%
CCTTGGGGGCCTCCTCCTCA+AGG - Chr1:69687523-69687542 MsG0180003886.01.T01:CDS 70.0%
GAGGAGGAGGCCCCCAAGGT+TGG + Chr1:69687522-69687541 None:intergenic 70.0%
GCAGGTGGTATGGGGCGACC+TGG + Chr1:69686075-69686094 None:intergenic 70.0%
GGGTTTCCTGCTCACGGCGG+TGG - Chr1:69687544-69687563 MsG0180003886.01.T01:CDS 70.0%
TGTGGCCGCTGCACAGGCAC+AGG - Chr1:69688812-69688831 MsG0180003886.01.T01:intron 70.0%
!! GGAGGCCCCCAAGGTTGGTG+AGG + Chr1:69687517-69687536 None:intergenic 70.0%
CCACCACCACCGCCGTGAGC+AGG + Chr1:69687553-69687572 None:intergenic 75.0%
! CCTGCTCACGGCGGTGGTGG+TGG - Chr1:69687550-69687569 MsG0180003886.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69684356 69689261 69684356 ID=MsG0180003886.01;Name=MsG0180003886.01
Chr1 mRNA 69684356 69689261 69684356 ID=MsG0180003886.01.T01;Parent=MsG0180003886.01;Name=MsG0180003886.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0.33|0.28|1|0.5|0.57|7|286|338
Chr1 exon 69684356 69684831 69684356 ID=MsG0180003886.01.T01:exon:6057;Parent=MsG0180003886.01.T01
Chr1 exon 69685522 69685756 69685522 ID=MsG0180003886.01.T01:exon:6056;Parent=MsG0180003886.01.T01
Chr1 exon 69686072 69686141 69686072 ID=MsG0180003886.01.T01:exon:6055;Parent=MsG0180003886.01.T01
Chr1 exon 69686484 69686632 69686484 ID=MsG0180003886.01.T01:exon:6054;Parent=MsG0180003886.01.T01
Chr1 exon 69687452 69687569 69687452 ID=MsG0180003886.01.T01:exon:6053;Parent=MsG0180003886.01.T01
Chr1 exon 69688905 69689033 69688905 ID=MsG0180003886.01.T01:exon:6052;Parent=MsG0180003886.01.T01
Chr1 exon 69689136 69689261 69689136 ID=MsG0180003886.01.T01:exon:6051;Parent=MsG0180003886.01.T01
Chr1 CDS 69689136 69689261 69689136 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69688905 69689033 69688905 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69687452 69687569 69687452 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69686484 69686632 69686484 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69686072 69686141 69686072 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69685522 69685756 69685522 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 CDS 69684642 69684831 69684642 ID=MsG0180003886.01.T01:cds;Parent=MsG0180003886.01.T01
Chr1 three_prime_UTR 69684356 69684641 69684356 ID=MsG0180003886.01.T01:three_prime_utr;Parent=MsG0180003886.01.T01
Gene Sequence

>MsG0180003886.01.T01

ATGCCAATCTTCCTGAAGATCAATTTGAAGGTCATGATGTGGAAAATTGCTGAAATTGACGATGCTATTTCCAATGCTCTGACTGAAGAGCATACCAATGAGGAACAACATGATGAAGGGAATCATGATGTGGTTCCTGCACAAAAGGTTGGCAGTATCATTGGACGCAAAGGAGAGTTTATTAAGAAAATTACTGAAGAGACTAGGGCTCGAGTTAAAATTCTCGATGGACCTCCAGGAAACGCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGGTCGCCCCATACCACCTGCTGTGGAGGGTTTGTTAAGGGTTCATAAACAAGTTGCCAATGTGGTCCGTGAGCCTGCAGATACCGCAGAAGAACACCTGCCAATTTTCGCTCTACGGGATGATAGTATTGTTGAGATACAAGGGGAACCCGCAGGAGTTCACAAGGCAGTTGAACTTATTGCACTCCATCTACGCAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTGTTTGAAACACAGATGCAACGACCAGATATTCGAGGTAACCAGAATATGCACCTCACCAACCTTGGGGGCCTCCTCCTCAAGGGTCACACAGCACATGCAAATCCCGCTGTCCTTGCAGATGCTGTTATTGGGGCATCAGGAGCAAATATAAGCTACATTCGCCGTGCTAGTGGAGCAAGTATTACAATTCAAGAGACTAGAGGCGTGCCAGGGGAGATGACTGTTGAAATAAGCGGTACCGCTTCACAAATACAGGCAGCCCAACAGCTGGTTCAGGTATTTTATTTTGAAGGTTCTTTGAGATTTCTAATCTGCTTAATTTCATGGCTGAAGCTGCAAATGCTGTGGCCGCTGCACAGGCACAGGATCATGGGAGGAACAGTTAACCAAGGCTATAATTCCTATCCCACTAATGCTCCTGTTTATGCATCTCCACAATCGGGTGCTGCAGGCCATGCACCTCCTGCAGACTATGGTTCTGTATACGGCACCAACTATGGCTATTGA
Protein sequence

>MsG0180003886.01.T01

MPIFLKINLKVMMWKIAEIDDAISNALTEEHTNEEQHDEGNHDVVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPPGNAERAVMVSAKEEPGRPIPPAVEGLLRVHKQVANVVREPADTAEEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVDRSIVGVFETQMQRPDIRGNQNMHLTNLGGLLLKGHTAHANPAVLADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVFYFEGSLRFLICLISWLKLQMLWPLHRHRIMGGTVNQGYNSYPTNAPVYASPQSGAAGHAPPADYGSVYGTNYGY*