AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017772.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017772.01.T01 MTR_3g111830 89.228 492 8 1 1 447 1 492 0.0 877
MsG0380017772.01.T01 MTR_4g092610 55.582 421 148 3 1 382 1 421 1.74e-159 457
MsG0380017772.01.T01 MTR_2g010520 54.545 429 144 4 1 382 1 425 3.30e-154 444
MsG0380017772.01.T01 MTR_2g010520 66.779 298 99 0 1 298 1 298 4.93e-143 412
MsG0380017772.01.T01 MTR_4g117360 50.476 420 166 8 9 391 31 445 9.58e-137 402
MsG0380017772.01.T01 MTR_6g052300 45.455 462 214 7 7 435 13 469 1.62e-136 401
MsG0380017772.01.T01 MTR_6g045467 50.873 401 173 7 9 389 27 423 2.74e-131 387
MsG0380017772.01.T01 MTR_6g045467 50.873 401 173 7 9 389 27 423 3.75e-131 387
MsG0380017772.01.T01 MTR_2g010520 67.568 259 84 0 1 259 1 259 8.50e-122 356
MsG0380017772.01.T01 MTR_6g051860 53.030 330 144 3 4 329 72 394 8.67e-122 361
MsG0380017772.01.T01 MTR_6g045467 49.740 384 169 7 9 372 27 406 8.45e-120 356
MsG0380017772.01.T01 MTR_7g010900 43.249 437 219 7 9 417 31 466 6.00e-111 336
MsG0380017772.01.T01 MTR_7g094620 46.905 420 177 12 9 386 31 446 3.90e-110 333
MsG0380017772.01.T01 MTR_6g045467 49.538 325 141 6 84 389 1 321 1.90e-102 310
MsG0380017772.01.T01 MTR_6g045467 49.231 325 142 6 84 389 4 324 3.76e-102 309
MsG0380017772.01.T01 MTR_6g045467 49.231 325 142 6 84 389 4 324 5.60e-102 309
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017772.01.T01 AT1G47330 78.859 298 63 0 1 298 1 298 4.20e-170 488
MsG0380017772.01.T01 AT1G47330 61.818 110 39 2 325 434 383 489 2.65e-34 134
MsG0380017772.01.T01 AT2G14520 57.143 413 146 4 1 382 1 413 9.15e-159 455
MsG0380017772.01.T01 AT2G14520 56.086 419 147 4 1 382 1 419 4.59e-158 454
MsG0380017772.01.T01 AT2G14520 56.086 419 147 4 1 382 1 419 4.59e-158 454
MsG0380017772.01.T01 AT4G33700 55.476 420 149 4 1 382 1 420 9.68e-154 443
MsG0380017772.01.T01 AT5G52790 52.670 412 168 4 2 396 3 404 3.28e-149 434
MsG0380017772.01.T01 AT5G52790 52.723 404 164 4 2 388 3 396 9.39e-147 424
MsG0380017772.01.T01 AT5G52790 52.320 388 158 4 2 372 3 380 8.44e-138 401
MsG0380017772.01.T01 AT5G52790 52.320 388 158 4 2 372 3 380 8.44e-138 401
MsG0380017772.01.T01 AT5G52790 52.185 389 159 4 2 373 3 381 3.05e-137 402
MsG0380017772.01.T01 AT4G33700 65.125 281 98 0 1 281 1 281 1.96e-129 376
MsG0380017772.01.T01 AT4G14240 48.571 420 167 5 9 391 31 438 3.96e-128 380
MsG0380017772.01.T01 AT4G14230 49.275 414 175 7 9 391 30 439 2.89e-126 375
MsG0380017772.01.T01 AT4G14240 47.857 420 161 6 9 391 31 429 1.53e-122 365
MsG0380017772.01.T01 AT1G03270 46.763 417 179 8 9 387 29 440 1.14e-121 363
MsG0380017772.01.T01 AT1G47330 77.419 217 49 0 82 298 1 217 3.45e-118 353
MsG0380017772.01.T01 AT1G47330 61.818 110 39 2 325 434 302 408 1.14e-34 134
MsG0380017772.01.T01 AT4G33700 52.226 337 123 4 84 382 1 337 5.90e-112 333
MsG0380017772.01.T01 AT2G14520 51.786 336 125 4 84 382 1 336 2.55e-111 332
MsG0380017772.01.T01 AT4G14240 46.821 346 136 5 82 391 1 334 3.02e-99 302

Find 117 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCCAAAGATGAGAATT+AGG 0.181579 3:+100520000 None:intergenic
CTTAACAACTGGGAATATTT+TGG 0.190462 3:+100520236 None:intergenic
CCATTGTCATTATTGAATTC+AGG 0.202132 3:+100518908 None:intergenic
GCTCCGGGCATTGCTATTAA+TGG 0.221210 3:-100520530 MsG0380017772.01.T01:five_prime_UTR
GTTACCCTAATTCTCATCTT+TGG 0.237922 3:-100520005 MsG0380017772.01.T01:CDS
GTTCGCTCTCCTGCATAAAC+TGG 0.247690 3:+100518871 None:intergenic
GTTGCAAAAGTTTCCCTATA+TGG 0.254420 3:-100516598 MsG0380017772.01.T01:three_prime_UTR
AGCACACCTTACCTTGCTTA+TGG 0.258974 3:+100519755 None:intergenic
ACTCTTGGACTCATGTCTTT+AGG 0.262493 3:-100520318 MsG0380017772.01.T01:CDS
GAACACTATGCTTGCTAGTT+TGG 0.271870 3:-100516553 MsG0380017772.01.T01:three_prime_UTR
GGTATGCTTCGCTGGTCTTA+TGG 0.276337 3:-100520349 MsG0380017772.01.T01:CDS
AAGGGAAAATGCCTTTGATA+TGG 0.302600 3:+100519047 None:intergenic
AGGAGAGCGAACAAACATTA+TGG 0.326640 3:-100518860 MsG0380017772.01.T01:CDS
TTATGCTGCTGTCTTGATTT+CGG 0.334551 3:-100520027 MsG0380017772.01.T01:CDS
AGTTAACATGAATGCTTCTA+AGG 0.340623 3:-100516839 MsG0380017772.01.T01:CDS
CTTATGGCTGGTCTCACTCT+TGG 0.347100 3:-100520333 MsG0380017772.01.T01:CDS
TATTAACATAATGCCATATA+GGG 0.347809 3:+100516585 None:intergenic
AGATGCTGATTCTTAACAAC+TGG 0.362278 3:+100520225 None:intergenic
CCTTCTAATTTAGCAGTTCA+AGG 0.367178 3:-100516787 MsG0380017772.01.T01:CDS
ATATTAACATAATGCCATAT+AGG 0.370278 3:+100516584 None:intergenic
AAACATTATGGGACTTGTTC+TGG 0.370883 3:-100518848 MsG0380017772.01.T01:intron
AATACACAACAATTCTCTTC+AGG 0.393381 3:+100516318 None:intergenic
GCACACCTTACCTTGCTTAT+GGG 0.393731 3:+100519756 None:intergenic
TAAGAGATGGCTGCAGAGAT+AGG 0.399958 3:-100520420 MsG0380017772.01.T01:exon
CTTGAAGTTCTCATCAAATC+TGG 0.405250 3:-100520285 MsG0380017772.01.T01:CDS
CATTGTCATTATTGAATTCA+GGG 0.415244 3:+100518909 None:intergenic
CTCTCCAAAGATGAGAATTA+GGG 0.416189 3:+100520001 None:intergenic
TCTCTTTATGGTTGATTCAA+AGG 0.420745 3:-100518086 MsG0380017772.01.T01:CDS
CTCCGGGCATTGCTATTAAT+GGG 0.422767 3:-100520529 MsG0380017772.01.T01:five_prime_UTR
CAGGTGCTTGATCGGATGTT+GGG 0.423011 3:-100519369 MsG0380017772.01.T01:CDS
CCACCCAACGAAGTGGTTGT+TGG 0.425913 3:-100517407 MsG0380017772.01.T01:CDS
GAAAAGCTGCTCTGTTAAAG+AGG 0.428710 3:-100519341 MsG0380017772.01.T01:CDS
ACTTTCCGATATTTGATCAA+TGG 0.429420 3:+100516708 None:intergenic
TACCACCATTGATCAAATAT+CGG 0.434482 3:-100516713 MsG0380017772.01.T01:CDS
TGTAATCGAAGAGCTTCTTC+AGG 0.437035 3:-100517366 MsG0380017772.01.T01:intron
CTTGCTTATGGGATAAGCTA+TGG 0.437062 3:+100519767 None:intergenic
TTAGAGTTGCATCCAAATCA+AGG 0.438762 3:+100519028 None:intergenic
CTGTACATATTGATAATCAT+AGG 0.453758 3:-100520375 MsG0380017772.01.T01:CDS
AAATGATTATGTTTATGCTC+CGG 0.454649 3:-100520546 MsG0380017772.01.T01:five_prime_UTR
GGTTGTTGGTGTTATTTCAA+TGG 0.455509 3:-100517393 MsG0380017772.01.T01:CDS
TCTACAGCTACTTCTGCAAC+GGG 0.456138 3:-100516742 MsG0380017772.01.T01:CDS
CCTTGAACTGCTAAATTAGA+AGG 0.461877 3:+100516787 None:intergenic
AATGATTATGTTTATGCTCC+GGG 0.462274 3:-100520545 MsG0380017772.01.T01:five_prime_UTR
TGCTTCGCTGGTCTTATGGC+TGG 0.465349 3:-100520345 MsG0380017772.01.T01:CDS
ATAGGATTGGTATGCTTCGC+TGG 0.465631 3:-100520357 MsG0380017772.01.T01:CDS
TTCAAGGGCACCGGCTATGA+TGG 0.468114 3:+100519104 None:intergenic
GATCGGAAATTCATTAGCTA+TGG 0.472791 3:-100520184 MsG0380017772.01.T01:CDS
GGAGAGCGAACAAACATTAT+GGG 0.473611 3:-100518859 MsG0380017772.01.T01:CDS
GTGAGAGGAGAAGAATGGTT+AGG 0.475435 3:+100520447 None:intergenic
CACTTCGTTGGGTGGAAACA+CGG 0.476023 3:+100517415 None:intergenic
TCAGGTGCTTGATCGGATGT+TGG 0.476103 3:-100519370 MsG0380017772.01.T01:intron
ACACCAACAACCACTTCGTT+GGG 0.477670 3:+100517404 None:intergenic
AAAGAATAACAGAGTAACAT+AGG 0.480736 3:-100516653 MsG0380017772.01.T01:three_prime_UTR
TTGTACACGATACGGATTGA+TGG 0.481123 3:-100519841 MsG0380017772.01.T01:CDS
CAGATTTGATGAGAACTTCA+AGG 0.482557 3:+100520286 None:intergenic
GCTGTAGAAATCGAATTAGT+TGG 0.483806 3:+100516757 None:intergenic
AGGGAAAATGCCTTTGATAT+GGG 0.486803 3:+100519048 None:intergenic
GATGCTGTGGAACTAAATTC+TGG 0.488539 3:-100520398 MsG0380017772.01.T01:CDS
TTCAGTCAATTCAAGGGCAC+CGG 0.499613 3:+100519095 None:intergenic
AACACCAACAACCACTTCGT+TGG 0.500800 3:+100517403 None:intergenic
TTAATGGGTATATGATATGT+GGG 0.500963 3:-100520514 MsG0380017772.01.T01:five_prime_UTR
GGCTGCAACAGATTTGCATC+AGG 0.502522 3:+100516808 None:intergenic
TTGGGTGGAAACACGGGCAA+GGG 0.503791 3:+100517422 None:intergenic
CATATTGATAATCATAGGAT+TGG 0.504612 3:-100520370 MsG0380017772.01.T01:CDS
CTGAATTCAATAATGACAAT+GGG 0.509825 3:-100518907 MsG0380017772.01.T01:CDS
TTCTACAGCTACTTCTGCAA+CGG 0.509991 3:-100516743 MsG0380017772.01.T01:CDS
AGTAGAGTCCCAGTTTATGC+AGG 0.520155 3:-100518880 MsG0380017772.01.T01:CDS
TTCGCTCTCCTGCATAAACT+GGG 0.527846 3:+100518872 None:intergenic
CATGAATGCTTCTAAGGAGA+AGG 0.530301 3:-100516833 MsG0380017772.01.T01:CDS
TACATATGTAGGTACAGTGT+TGG 0.530341 3:-100517579 MsG0380017772.01.T01:intron
TGCCTTTGATATGGGAGTCA+TGG 0.532757 3:+100519056 None:intergenic
GTTGGGTGGAAACACGGGCA+AGG 0.534220 3:+100517421 None:intergenic
GAAATCAAGACAGCAGCATA+AGG 0.534769 3:+100520029 None:intergenic
AGGGAGCATTATCAAGGTCC+AGG 0.534989 3:+100517441 None:intergenic
TGTTGGTGTTATTTCAATGG+AGG 0.536577 3:-100517390 MsG0380017772.01.T01:CDS
CGGAAATTCATTAGCTATGG+AGG 0.537674 3:-100520181 MsG0380017772.01.T01:intron
CAAGCTGTTTGTACACGATA+CGG 0.539871 3:-100519849 MsG0380017772.01.T01:CDS
ATTAATGGGTATATGATATG+TGG 0.543105 3:-100520515 MsG0380017772.01.T01:five_prime_UTR
TTGCTTATGGGATAAGCTAT+GGG 0.544758 3:+100519768 None:intergenic
CTTGATCGGATGTTGGGTAA+AGG 0.545868 3:-100519363 MsG0380017772.01.T01:CDS
ACTTCGTTGGGTGGAAACAC+GGG 0.546891 3:+100517416 None:intergenic
CCTGAATTCAATAATGACAA+TGG 0.546972 3:-100518908 MsG0380017772.01.T01:CDS
CGGGCAAGGGAGCATTATCA+AGG 0.558047 3:+100517435 None:intergenic
GTTTCTGTTGAAGAACAAAA+CGG 0.562975 3:-100516631 MsG0380017772.01.T01:three_prime_UTR
CCTAATTCTCATCTTTGGAG+AGG 0.564389 3:-100520000 MsG0380017772.01.T01:intron
TAGAGTTGCATCCAAATCAA+GGG 0.567063 3:+100519029 None:intergenic
AGGTTGTTCATATTGCATCC+TGG 0.569511 3:-100517459 MsG0380017772.01.T01:CDS
TTAAAAGCAGGCGTTGCTGG+TGG 0.574837 3:+100517494 None:intergenic
CGTGTTTCCACCCAACGAAG+TGG 0.574989 3:-100517414 MsG0380017772.01.T01:CDS
GATATTTGATCAATGGTGGT+AGG 0.578278 3:+100516715 None:intergenic
TACCCATTAATAGCAATGCC+CGG 0.580498 3:+100520527 None:intergenic
CCAACAACCACTTCGTTGGG+TGG 0.582637 3:+100517407 None:intergenic
TGCCATGACTCCCATATCAA+AGG 0.585212 3:-100519058 MsG0380017772.01.T01:CDS
ACACGATACGGATTGATGGT+TGG 0.586203 3:-100519837 MsG0380017772.01.T01:CDS
TCTGCGTAGGCTGGGAAAGG+AGG 0.586913 3:-100519150 MsG0380017772.01.T01:intron
TATCGGAAAGTGAGTCACTC+AGG 0.588739 3:-100516696 MsG0380017772.01.T01:CDS
TTCCGATATTTGATCAATGG+TGG 0.589597 3:+100516711 None:intergenic
TATACTGAATGAATTTCAGA+AGG 0.592402 3:-100517896 MsG0380017772.01.T01:CDS
GATGAGACAACCATCATAGC+CGG 0.601218 3:-100519114 MsG0380017772.01.T01:CDS
TCCTCTCACAGAGTAAGAGA+TGG 0.611443 3:-100520433 MsG0380017772.01.T01:exon
AAAAGCTGCTCTGTTAAAGA+GGG 0.612879 3:-100519340 MsG0380017772.01.T01:CDS
TGATATGTGGGGAAGAAAAG+CGG 0.619385 3:-100520502 MsG0380017772.01.T01:five_prime_UTR
TCACACGATACTGTGACTGC+TGG 0.619416 3:-100517554 MsG0380017772.01.T01:CDS
GCCATCTCTTACTCTGTGAG+AGG 0.619484 3:+100520432 None:intergenic
AAAAGAAGAACACGAACAAG+CGG 0.620527 3:+100519801 None:intergenic
GATGCTGATTCTTAACAACT+GGG 0.626895 3:+100520226 None:intergenic
ACTCTGTGAGAGGAGAAGAA+TGG 0.639067 3:+100520442 None:intergenic
TATCGTGTACAAACAGCTTG+AGG 0.643312 3:+100519852 None:intergenic
CATAGCTTATCCCATAAGCA+AGG 0.643663 3:-100519766 MsG0380017772.01.T01:intron
ATCAAGACAGCAGCATAAGG+TGG 0.647982 3:+100520032 None:intergenic
ACTGCTGGTAGTAAGATTGA+CGG 0.652137 3:-100517539 MsG0380017772.01.T01:CDS
GCGGCATGGATGCGATGATG+AGG 0.659853 3:+100520258 None:intergenic
GCTGCAGAGATAGGATGCTG+TGG 0.674517 3:-100520411 MsG0380017772.01.T01:CDS
ATACTGAATGAATTTCAGAA+GGG 0.676158 3:-100517895 MsG0380017772.01.T01:intron
TAATGGGTATATGATATGTG+GGG 0.676952 3:-100520513 MsG0380017772.01.T01:five_prime_UTR
TCATTCAGTATATCATACAG+AGG 0.709636 3:+100517907 None:intergenic
GCTGGTAGTAAGATTGACGG+CGG 0.746959 3:-100517536 MsG0380017772.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATATCCAAAAAATTA+AGG - Chr3:100519065-100519084 MsG0380017772.01.T01:CDS 15.0%
!! CTATGATAAAAGATAAAATA+AGG - Chr3:100517290-100517309 MsG0380017772.01.T01:intron 15.0%
!!! AAATTATGGTTTTGATATTT+TGG - Chr3:100518611-100518630 MsG0380017772.01.T01:intron 15.0%
!!! AATTATGGTTTTGATATTTT+GGG - Chr3:100518612-100518631 MsG0380017772.01.T01:intron 15.0%
!!! TAATGGACATTATTATTAAT+CGG + Chr3:100518119-100518138 None:intergenic 15.0%
!! ACATTATTCACTATATATCA+CGG + Chr3:100518372-100518391 None:intergenic 20.0%
!! ACCAATTCATTGTAATTTAA+TGG - Chr3:100518753-100518772 MsG0380017772.01.T01:intron 20.0%
!! ATATTAACATAATGCCATAT+AGG + Chr3:100520312-100520331 None:intergenic 20.0%
!! ATGAGATAATTTATAACAAG+AGG + Chr3:100518257-100518276 None:intergenic 20.0%
!! TATTAACATAATGCCATATA+GGG + Chr3:100520311-100520330 None:intergenic 20.0%
!! TGAGATAATTTATAACAAGA+GGG + Chr3:100518256-100518275 None:intergenic 20.0%
!! TTATACAAACAAGACTATAA+TGG + Chr3:100517206-100517225 None:intergenic 20.0%
!! TTATGATAGAAGACTAATAA+TGG + Chr3:100518136-100518155 None:intergenic 20.0%
!!! AAGTTGTTGATATGATTTTA+TGG - Chr3:100518911-100518930 MsG0380017772.01.T01:CDS 20.0%
!!! AATTGTTGTGTATTTGTTTT+GGG - Chr3:100520584-100520603 MsG0380017772.01.T01:five_prime_UTR 20.0%
!!! AGCATAAACATAATCATTTT+CGG + Chr3:100516346-100516365 None:intergenic 20.0%
!!! TGTGTTTTAGTTTCATAAAA+AGG + Chr3:100520422-100520441 None:intergenic 20.0%
!!! TTACTCTGTTATTCTTTTAA+TGG + Chr3:100520237-100520256 None:intergenic 20.0%
! AAAGAATAACAGAGTAACAT+AGG - Chr3:100520240-100520259 MsG0380017772.01.T01:CDS 25.0%
! AAAGTGATCTAATTAAACTG+GGG + Chr3:100519906-100519925 None:intergenic 25.0%
! AAATGATTATGTTTATGCTC+CGG - Chr3:100516347-100516366 MsG0380017772.01.T01:three_prime_UTR 25.0%
! ACAAAGTGATCTAATTAAAC+TGG + Chr3:100519908-100519927 None:intergenic 25.0%
! ACAATAGCATCAAGAAAAAT+AGG + Chr3:100516840-100516859 None:intergenic 25.0%
! ATACTGAATGAATTTCAGAA+GGG - Chr3:100518998-100519017 MsG0380017772.01.T01:intron 25.0%
! ATATGAAAAAGAATTTACCG+AGG + Chr3:100518871-100518890 None:intergenic 25.0%
! ATCATACTATAGTAATATGC+AGG + Chr3:100517474-100517493 None:intergenic 25.0%
! CAAAGTGATCTAATTAAACT+GGG + Chr3:100519907-100519926 None:intergenic 25.0%
! CATAAACAATAATGATAGTC+AGG + Chr3:100518568-100518587 None:intergenic 25.0%
! CATATGCATGAAATGAAAAT+TGG - Chr3:100518886-100518905 MsG0380017772.01.T01:CDS 25.0%
! CATTGTCATTATTGAATTCA+GGG + Chr3:100517987-100518006 None:intergenic 25.0%
! CTGAATTCAATAATGACAAT+GGG - Chr3:100517986-100518005 MsG0380017772.01.T01:intron 25.0%
! GAATTAGTATATAAGACACT+GGG + Chr3:100519772-100519791 None:intergenic 25.0%
! GCCATTAAATTACAATGAAT+TGG + Chr3:100518757-100518776 None:intergenic 25.0%
! TATACTGAATGAATTTCAGA+AGG - Chr3:100518997-100519016 MsG0380017772.01.T01:intron 25.0%
! TATAGTGAATAATGTTTGTG+AGG - Chr3:100518377-100518396 MsG0380017772.01.T01:intron 25.0%
! TATCCAAAAAATTAAGGATG+AGG - Chr3:100519071-100519090 MsG0380017772.01.T01:CDS 25.0%
!! AATAAGTTGAAAACAGCTTA+TGG - Chr3:100517354-100517373 MsG0380017772.01.T01:intron 25.0%
!! AATTAGATCACTTTGTTGTA+TGG - Chr3:100519912-100519931 MsG0380017772.01.T01:intron 25.0%
!! ATGAAGATTGTGATATTTTC+AGG - Chr3:100517505-100517524 MsG0380017772.01.T01:CDS 25.0%
!! ATTAATGGGTATATGATATG+TGG - Chr3:100516378-100516397 MsG0380017772.01.T01:three_prime_UTR 25.0%
!! CATATTGATAATCATAGGAT+TGG - Chr3:100516523-100516542 MsG0380017772.01.T01:three_prime_UTR 25.0%
!! CTGTACATATTGATAATCAT+AGG - Chr3:100516518-100516537 MsG0380017772.01.T01:three_prime_UTR 25.0%
!! GAATTGTTGTGTATTTGTTT+TGG - Chr3:100520583-100520602 MsG0380017772.01.T01:five_prime_UTR 25.0%
!! TTAATGGGTATATGATATGT+GGG - Chr3:100516379-100516398 MsG0380017772.01.T01:three_prime_UTR 25.0%
!! TTTTCTCTGTATCCTTAATA+GGG - Chr3:100519221-100519240 MsG0380017772.01.T01:intron 25.0%
!! TTTTTCACTTATATACATCC+AGG - Chr3:100518777-100518796 MsG0380017772.01.T01:intron 25.0%
!!! CTATACTTTCTTGTTTTGTA+AGG - Chr3:100516973-100516992 MsG0380017772.01.T01:intron 25.0%
!!! GGTTTTAAACTTACTTGTTA+TGG + Chr3:100519858-100519877 None:intergenic 25.0%
!!! TGTTTTTGAAATATCATCTG+TGG - Chr3:100519198-100519217 MsG0380017772.01.T01:intron 25.0%
!!! TTAATTTTGTTTTTCTGCGT+AGG - Chr3:100517730-100517749 MsG0380017772.01.T01:intron 25.0%
!!! TTTTGATGATTATCTCTTTG+AGG - Chr3:100519281-100519300 MsG0380017772.01.T01:intron 25.0%
AAAAACATAATGTCAACACG+AGG + Chr3:100519185-100519204 None:intergenic 30.0%
AAAAATGAATTCAGCGAACA+AGG + Chr3:100517009-100517028 None:intergenic 30.0%
AAACAAAAGAACTTGATCAC+AGG + Chr3:100517673-100517692 None:intergenic 30.0%
AAATCTCTACCTTTATCCAA+GGG + Chr3:100519144-100519163 None:intergenic 30.0%
AAGTGATCTAATTAAACTGG+GGG + Chr3:100519905-100519924 None:intergenic 30.0%
AATACACAACAATTCTCTTC+AGG + Chr3:100520578-100520597 None:intergenic 30.0%
AATGATTATGTTTATGCTCC+GGG - Chr3:100516348-100516367 MsG0380017772.01.T01:three_prime_UTR 30.0%
ACAATTGCAGCAATAACAAA+TGG + Chr3:100519698-100519717 None:intergenic 30.0%
ACATACATGCATAACTATAG+TGG + Chr3:100519567-100519586 None:intergenic 30.0%
ACTTTCATAAGACCCTATTA+AGG + Chr3:100519236-100519255 None:intergenic 30.0%
ACTTTCCGATATTTGATCAA+TGG + Chr3:100520188-100520207 None:intergenic 30.0%
AGTTAACATGAATGCTTCTA+AGG - Chr3:100520054-100520073 MsG0380017772.01.T01:CDS 30.0%
ATCAAATTTGTGTGCATTTC+AGG - Chr3:100519795-100519814 MsG0380017772.01.T01:CDS 30.0%
ATGAGGAAATCATGATTACT+GGG + Chr3:100518940-100518959 None:intergenic 30.0%
CACTATTCTTGTAATCATGT+TGG - Chr3:100518181-100518200 MsG0380017772.01.T01:intron 30.0%
CCAGGTTAAAAATCTCTTTA+TGG - Chr3:100518795-100518814 MsG0380017772.01.T01:intron 30.0%
CCATTGTCATTATTGAATTC+AGG + Chr3:100517988-100518007 None:intergenic 30.0%
CCTGAATTCAATAATGACAA+TGG - Chr3:100517985-100518004 MsG0380017772.01.T01:intron 30.0%
CGAATTAGTATATAAGACAC+TGG + Chr3:100519773-100519792 None:intergenic 30.0%
GTATTCAGTTTAGTGTAGTT+TGG - Chr3:100519955-100519974 MsG0380017772.01.T01:intron 30.0%
GTTTCTGTTGAAGAACAAAA+CGG - Chr3:100520262-100520281 MsG0380017772.01.T01:CDS 30.0%
TAAATCTCTACCTTTATCCA+AGG + Chr3:100519145-100519164 None:intergenic 30.0%
TACCACCATTGATCAAATAT+CGG - Chr3:100520180-100520199 MsG0380017772.01.T01:intron 30.0%
TATCGTCGTTTATTGTTAAC+AGG - Chr3:100517933-100517952 MsG0380017772.01.T01:intron 30.0%
TCATTCAGTATATCATACAG+AGG + Chr3:100518989-100519008 None:intergenic 30.0%
TGATCATCAGAAAAATTCCT+CGG - Chr3:100518851-100518870 MsG0380017772.01.T01:CDS 30.0%
! AAGACTTTTGTGGATTTTCA+TGG - Chr3:100517584-100517603 MsG0380017772.01.T01:intron 30.0%
! AGTCTTTTCAGTCAATTCAA+GGG + Chr3:100517807-100517826 None:intergenic 30.0%
! CAAAACAAGAAAGTATAGCT+CGG + Chr3:100516971-100516990 None:intergenic 30.0%
! CACAATCTTCATATTTTCAC+AGG + Chr3:100517497-100517516 None:intergenic 30.0%
! CCATAAAGAGATTTTTAACC+TGG + Chr3:100518798-100518817 None:intergenic 30.0%
! CTTAACAACTGGGAATATTT+TGG + Chr3:100516660-100516679 None:intergenic 30.0%
! GTTTTCTCTGTATCCTTAAT+AGG - Chr3:100519220-100519239 MsG0380017772.01.T01:intron 30.0%
! TAATGGGTATATGATATGTG+GGG - Chr3:100516380-100516399 MsG0380017772.01.T01:three_prime_UTR 30.0%
! TCTCTTTATGGTTGATTCAA+AGG - Chr3:100518807-100518826 MsG0380017772.01.T01:intron 30.0%
! TTGCTTTGTACTCTTTTGAT+CGG - Chr3:100516692-100516711 MsG0380017772.01.T01:CDS 30.0%
! TTTGAAATGCATAGTTCAAG+AGG - Chr3:100517624-100517643 MsG0380017772.01.T01:intron 30.0%
!! AAGAAAATGGATTTTCTGCA+TGG - Chr3:100518683-100518702 MsG0380017772.01.T01:intron 30.0%
!! CTGATGATCATTTTTCTTAG+AGG + Chr3:100518841-100518860 None:intergenic 30.0%
!! GTGATCAAGTTCTTTTGTTT+CGG - Chr3:100517673-100517692 MsG0380017772.01.T01:intron 30.0%
!! TTGAGATTTTGAGTAGATGA+TGG - Chr3:100518083-100518102 MsG0380017772.01.T01:CDS 30.0%
!!! ATGGTTTTGATATTTTGGGA+AGG - Chr3:100518616-100518635 MsG0380017772.01.T01:intron 30.0%
!!! GTTCCTCATCCTTAATTTTT+TGG + Chr3:100519077-100519096 None:intergenic 30.0%
!!! GTTGTTTTGATAAGCTATCT+TGG - Chr3:100517317-100517336 MsG0380017772.01.T01:intron 30.0%
!!! TGGTTTTGATATTTTGGGAA+GGG - Chr3:100518617-100518636 MsG0380017772.01.T01:intron 30.0%
AAAAGAAGAACACGAACAAG+CGG + Chr3:100517095-100517114 None:intergenic 35.0%
AAAAGCTGCTCTGTTAAAGA+GGG - Chr3:100517553-100517572 MsG0380017772.01.T01:CDS 35.0%
AAACGACGATAGAAACATAG+TGG + Chr3:100517924-100517943 None:intergenic 35.0%
AAATTTGTGTGCATTTCAGG+AGG - Chr3:100519798-100519817 MsG0380017772.01.T01:CDS 35.0%
AAGGGAAAATGCCTTTGATA+TGG + Chr3:100517849-100517868 None:intergenic 35.0%
AAGTTTGTGGTTGATCTACT+CGG - Chr3:100519252-100519271 MsG0380017772.01.T01:intron 35.0%
AGGGAAAATGCCTTTGATAT+GGG + Chr3:100517848-100517867 None:intergenic 35.0%
ATGCATAGTTCAAGAGGAAT+TGG - Chr3:100517630-100517649 MsG0380017772.01.T01:intron 35.0%
CAGATTTGATGAGAACTTCA+AGG + Chr3:100516610-100516629 None:intergenic 35.0%
CCTTCTAATTTAGCAGTTCA+AGG - Chr3:100520106-100520125 MsG0380017772.01.T01:intron 35.0%
CCTTGAACTGCTAAATTAGA+AGG + Chr3:100520109-100520128 None:intergenic 35.0%
CTCTCCAAAGATGAGAATTA+GGG + Chr3:100516895-100516914 None:intergenic 35.0%
CTTGAAGTTCTCATCAAATC+TGG - Chr3:100516608-100516627 MsG0380017772.01.T01:three_prime_UTR 35.0%
GAAAATTTGTATCGAGTGAC+TGG - Chr3:100518660-100518679 MsG0380017772.01.T01:intron 35.0%
GATATTTGATCAATGGTGGT+AGG + Chr3:100520181-100520200 None:intergenic 35.0%
GATCGGAAATTCATTAGCTA+TGG - Chr3:100516709-100516728 MsG0380017772.01.T01:CDS 35.0%
GATGAGGAAATCATGATTAC+TGG + Chr3:100518941-100518960 None:intergenic 35.0%
GCTGTAGAAATCGAATTAGT+TGG + Chr3:100520139-100520158 None:intergenic 35.0%
GGATGCAACTCTAAATTTGT+GGG - Chr3:100517874-100517893 MsG0380017772.01.T01:intron 35.0%
GTTACCCTAATTCTCATCTT+TGG - Chr3:100516888-100516907 MsG0380017772.01.T01:intron 35.0%
GTTGCAAAAGTTTCCCTATA+TGG - Chr3:100520295-100520314 MsG0380017772.01.T01:CDS 35.0%
TACATATGTAGGTACAGTGT+TGG - Chr3:100519314-100519333 MsG0380017772.01.T01:CDS 35.0%
TAGAGTTGCATCCAAATCAA+GGG + Chr3:100517867-100517886 None:intergenic 35.0%
TATGGGATTCATGTTAAGCT+CGG - Chr3:100518527-100518546 MsG0380017772.01.T01:intron 35.0%
TCACAAGACAATTTAGAGAG+TGG + Chr3:100519879-100519898 None:intergenic 35.0%
TGCATGGTACATCATAAGAA+TGG - Chr3:100518699-100518718 MsG0380017772.01.T01:intron 35.0%
TGGATGCAACTCTAAATTTG+TGG - Chr3:100517873-100517892 MsG0380017772.01.T01:intron 35.0%
TGTTTGTGAGGTTTAATGCT+AGG - Chr3:100518389-100518408 MsG0380017772.01.T01:intron 35.0%
TTAGAGTTGCATCCAAATCA+AGG + Chr3:100517868-100517887 None:intergenic 35.0%
TTATGCTGCTGTCTTGATTT+CGG - Chr3:100516866-100516885 MsG0380017772.01.T01:intron 35.0%
TTCCGATATTTGATCAATGG+TGG + Chr3:100520185-100520204 None:intergenic 35.0%
TTGCTTATGGGATAAGCTAT+GGG + Chr3:100517128-100517147 None:intergenic 35.0%
! AAACATTATGGGACTTGTTC+TGG - Chr3:100518045-100518064 MsG0380017772.01.T01:CDS 35.0%
! AATCCCATAAACCTTTTCCT+CGG + Chr3:100518516-100518535 None:intergenic 35.0%
! AATTTTCTATTGCACCACAC+AGG + Chr3:100518647-100518666 None:intergenic 35.0%
! CAGTCTTTTCAGTCAATTCA+AGG + Chr3:100517808-100517827 None:intergenic 35.0%
! TAGGGTCTTATGAAAGTTTG+TGG - Chr3:100519239-100519258 MsG0380017772.01.T01:intron 35.0%
!! AACAACTGGGAATATTTTGG+CGG + Chr3:100516657-100516676 None:intergenic 35.0%
!! AGATGCTGATTCTTAACAAC+TGG + Chr3:100516671-100516690 None:intergenic 35.0%
!! ATTCTTTGTTTCTGCACTGA+AGG - Chr3:100517957-100517976 MsG0380017772.01.T01:intron 35.0%
!! GATCCTTGCAAAAAAGTACT+AGG - Chr3:100518485-100518504 MsG0380017772.01.T01:intron 35.0%
!! GATGCTGATTCTTAACAACT+GGG + Chr3:100516670-100516689 None:intergenic 35.0%
!! GGTTGTTGGTGTTATTTCAA+TGG - Chr3:100519500-100519519 MsG0380017772.01.T01:intron 35.0%
!! TGTTGGTGTTATTTCAATGG+AGG - Chr3:100519503-100519522 MsG0380017772.01.T01:intron 35.0%
!! TTCTTTGTTTCTGCACTGAA+GGG - Chr3:100517958-100517977 MsG0380017772.01.T01:intron 35.0%
!!! AAAGGCATTTTCCCTTGATT+TGG - Chr3:100517853-100517872 MsG0380017772.01.T01:intron 35.0%
!!! GATATTTTCAGGTGCTTGAT+CGG - Chr3:100517516-100517535 MsG0380017772.01.T01:CDS 35.0%
AATTTCGAAGTCGCAGTACA+AGG + Chr3:100518596-100518615 None:intergenic 40.0%
ACTCTTGGACTCATGTCTTT+AGG - Chr3:100516575-100516594 MsG0380017772.01.T01:three_prime_UTR 40.0%
ACTGCTGGTAGTAAGATTGA+CGG - Chr3:100519354-100519373 MsG0380017772.01.T01:CDS 40.0%
AGCACATATGACAGGAACAT+TGG + Chr3:100519732-100519751 None:intergenic 40.0%
AGGAGAGCGAACAAACATTA+TGG - Chr3:100518033-100518052 MsG0380017772.01.T01:intron 40.0%
AGGTTGTTCATATTGCATCC+TGG - Chr3:100519434-100519453 MsG0380017772.01.T01:intron 40.0%
ATCGAGTGACTGGAAGAAAA+TGG - Chr3:100518670-100518689 MsG0380017772.01.T01:intron 40.0%
ATTATGTGTGTGTCTGTGTG+TGG - Chr3:100517165-100517184 MsG0380017772.01.T01:intron 40.0%
CAAGCTGTTTGTACACGATA+CGG - Chr3:100517044-100517063 MsG0380017772.01.T01:intron 40.0%
CACACAGACACACACATAAT+TGG + Chr3:100517165-100517184 None:intergenic 40.0%
CATAGCTTATCCCATAAGCA+AGG - Chr3:100517127-100517146 MsG0380017772.01.T01:intron 40.0%
CCTCTCCAAAGATGAGAATT+AGG + Chr3:100516896-100516915 None:intergenic 40.0%
CGGAAATTCATTAGCTATGG+AGG - Chr3:100516712-100516731 MsG0380017772.01.T01:CDS 40.0%
CTTATCCCATAAGCAAGGTA+AGG - Chr3:100517132-100517151 MsG0380017772.01.T01:intron 40.0%
CTTGCTTATGGGATAAGCTA+TGG + Chr3:100517129-100517148 None:intergenic 40.0%
GAAAAGCTGCTCTGTTAAAG+AGG - Chr3:100517552-100517571 MsG0380017772.01.T01:CDS 40.0%
GAAACAACAGCACATATGAC+AGG + Chr3:100519740-100519759 None:intergenic 40.0%
GAAATCAAGACAGCAGCATA+AGG + Chr3:100516867-100516886 None:intergenic 40.0%
GATCAAGTCATGACTAATGC+AGG - Chr3:100520026-100520045 MsG0380017772.01.T01:CDS 40.0%
GATGCTGTGGAACTAAATTC+TGG - Chr3:100516495-100516514 MsG0380017772.01.T01:three_prime_UTR 40.0%
GGAGAGCGAACAAACATTAT+GGG - Chr3:100518034-100518053 MsG0380017772.01.T01:intron 40.0%
GTACTGCGACTTCGAAATTA+TGG - Chr3:100518597-100518616 MsG0380017772.01.T01:intron 40.0%
GTGACTGTTGGTACATATGT+AGG - Chr3:100519303-100519322 MsG0380017772.01.T01:CDS 40.0%
GTGAGGTTTAATGCTAGGAT+TGG - Chr3:100518394-100518413 MsG0380017772.01.T01:intron 40.0%
TACCCATTAATAGCAATGCC+CGG + Chr3:100516369-100516388 None:intergenic 40.0%
TATCGTGTACAAACAGCTTG+AGG + Chr3:100517044-100517063 None:intergenic 40.0%
TGAAACACTGCAGAATGATG+AGG + Chr3:100518957-100518976 None:intergenic 40.0%
TGAGGAACAACTAGAGTTCA+AGG - Chr3:100519089-100519108 MsG0380017772.01.T01:CDS 40.0%
TGATATGTGGGGAAGAAAAG+CGG - Chr3:100516391-100516410 MsG0380017772.01.T01:three_prime_UTR 40.0%
TGTAATCGAAGAGCTTCTTC+AGG - Chr3:100519527-100519546 MsG0380017772.01.T01:intron 40.0%
TTCTACAGCTACTTCTGCAA+CGG - Chr3:100520150-100520169 MsG0380017772.01.T01:intron 40.0%
! CATGAATGCTTCTAAGGAGA+AGG - Chr3:100520060-100520079 MsG0380017772.01.T01:CDS 40.0%
! CCTAATTCTCATCTTTGGAG+AGG - Chr3:100516893-100516912 MsG0380017772.01.T01:intron 40.0%
! GAACACTATGCTTGCTAGTT+TGG - Chr3:100520340-100520359 MsG0380017772.01.T01:CDS 40.0%
! TGTGGATTTTCATGGCAATG+AGG - Chr3:100517592-100517611 MsG0380017772.01.T01:intron 40.0%
! TTGTACACGATACGGATTGA+TGG - Chr3:100517052-100517071 MsG0380017772.01.T01:CDS 40.0%
!! AAAAGTGCTCCCTTGGATAA+AGG - Chr3:100519132-100519151 MsG0380017772.01.T01:CDS 40.0%
!! CAACGCCTGCTTTTAAAAAG+CGG - Chr3:100519406-100519425 MsG0380017772.01.T01:intron 40.0%
!! GCTTTTAAAAAGCGGCATAG+AGG - Chr3:100519414-100519433 MsG0380017772.01.T01:intron 40.0%
!! TATCTCTTTGAGGTGACTGT+TGG - Chr3:100519291-100519310 MsG0380017772.01.T01:intron 40.0%
!! TTGCAAAAAAGTACTAGGCC+TGG - Chr3:100518490-100518509 MsG0380017772.01.T01:intron 40.0%
!! TTTGTTTTTCTGCGTAGGCT+GGG - Chr3:100517735-100517754 MsG0380017772.01.T01:intron 40.0%
!! TTTTTAAAAGCAGGCGTTGC+TGG + Chr3:100519405-100519424 None:intergenic 40.0%
!!! AGGCCTAGTACTTTTTTGCA+AGG + Chr3:100518491-100518510 None:intergenic 40.0%
!!! CTATGCCGCTTTTTAAAAGC+AGG + Chr3:100519414-100519433 None:intergenic 40.0%
!!! GGTGGACTTTTTTTCACTTG+TGG + Chr3:100519384-100519403 None:intergenic 40.0%
!!! TTTTGTTTTTCTGCGTAGGC+TGG - Chr3:100517734-100517753 MsG0380017772.01.T01:intron 40.0%
AACACCAACAACCACTTCGT+TGG + Chr3:100519493-100519512 None:intergenic 45.0%
AAGGACAGCTGTAGGAACAA+GGG - Chr3:100519108-100519127 MsG0380017772.01.T01:CDS 45.0%
ACACCAACAACCACTTCGTT+GGG + Chr3:100519492-100519511 None:intergenic 45.0%
ACTCTGTGAGAGGAGAAGAA+TGG + Chr3:100516454-100516473 None:intergenic 45.0%
AGCACACCTTACCTTGCTTA+TGG + Chr3:100517141-100517160 None:intergenic 45.0%
AGTAGAGTCCCAGTTTATGC+AGG - Chr3:100518013-100518032 MsG0380017772.01.T01:intron 45.0%
ATCAAGACAGCAGCATAAGG+TGG + Chr3:100516864-100516883 None:intergenic 45.0%
CTTGATCGGATGTTGGGTAA+AGG - Chr3:100517530-100517549 MsG0380017772.01.T01:CDS 45.0%
CTTTGTGCTCTCACTTAGCA+TGG - Chr3:100517701-100517720 MsG0380017772.01.T01:intron 45.0%
GATGAGACAACCATCATAGC+CGG - Chr3:100517779-100517798 MsG0380017772.01.T01:intron 45.0%
GCACACCTTACCTTGCTTAT+GGG + Chr3:100517140-100517159 None:intergenic 45.0%
GCTATCTTGGACAGCTTATG+TGG - Chr3:100517330-100517349 MsG0380017772.01.T01:intron 45.0%
GGCGACAAAGTTTCTCATCT+TGG - Chr3:100519933-100519952 MsG0380017772.01.T01:intron 45.0%
GTGAGAGGAGAAGAATGGTT+AGG + Chr3:100516449-100516468 None:intergenic 45.0%
TAAGAGATGGCTGCAGAGAT+AGG - Chr3:100516473-100516492 MsG0380017772.01.T01:three_prime_UTR 45.0%
TAGAGTTCAAGGACAGCTGT+AGG - Chr3:100519100-100519119 MsG0380017772.01.T01:CDS 45.0%
TATCGGAAAGTGAGTCACTC+AGG - Chr3:100520197-100520216 MsG0380017772.01.T01:CDS 45.0%
TCCTCTCACAGAGTAAGAGA+TGG - Chr3:100516460-100516479 MsG0380017772.01.T01:three_prime_UTR 45.0%
TCTACAGCTACTTCTGCAAC+GGG - Chr3:100520151-100520170 MsG0380017772.01.T01:intron 45.0%
TGCCATGACTCCCATATCAA+AGG - Chr3:100517835-100517854 MsG0380017772.01.T01:intron 45.0%
TGCCTTTGATATGGGAGTCA+TGG + Chr3:100517840-100517859 None:intergenic 45.0%
TGGCCGAGGAAAAGGTTTAT+GGG - Chr3:100518510-100518529 MsG0380017772.01.T01:intron 45.0%
TTCGCTCTCCTGCATAAACT+GGG + Chr3:100518024-100518043 None:intergenic 45.0%
! ACACGATACGGATTGATGGT+TGG - Chr3:100517056-100517075 MsG0380017772.01.T01:CDS 45.0%
! ATAGGATTGGTATGCTTCGC+TGG - Chr3:100516536-100516555 MsG0380017772.01.T01:three_prime_UTR 45.0%
! CTCCGGGCATTGCTATTAAT+GGG - Chr3:100516364-100516383 MsG0380017772.01.T01:three_prime_UTR 45.0%
! TTCAGTCAATTCAAGGGCAC+CGG + Chr3:100517801-100517820 None:intergenic 45.0%
!!! TTATTTATTTATGTAATTTT+AGG - Chr3:100516934-100516953 MsG0380017772.01.T01:intron 5.0%
ACTTCGTTGGGTGGAAACAC+GGG + Chr3:100519480-100519499 None:intergenic 50.0%
CAAGGACAGCTGTAGGAACA+AGG - Chr3:100519107-100519126 MsG0380017772.01.T01:CDS 50.0%
CACTTCGTTGGGTGGAAACA+CGG + Chr3:100519481-100519500 None:intergenic 50.0%
CAGGTGCTTGATCGGATGTT+GGG - Chr3:100517524-100517543 MsG0380017772.01.T01:CDS 50.0%
CTGGCCGAGGAAAAGGTTTA+TGG - Chr3:100518509-100518528 MsG0380017772.01.T01:intron 50.0%
GCCATCTCTTACTCTGTGAG+AGG + Chr3:100516464-100516483 None:intergenic 50.0%
GCTGGTAGTAAGATTGACGG+CGG - Chr3:100519357-100519376 MsG0380017772.01.T01:CDS 50.0%
GGCTGCAACAGATTTGCATC+AGG + Chr3:100520088-100520107 None:intergenic 50.0%
GTTCGCTCTCCTGCATAAAC+TGG + Chr3:100518025-100518044 None:intergenic 50.0%
TCACACGATACTGTGACTGC+TGG - Chr3:100519339-100519358 MsG0380017772.01.T01:CDS 50.0%
TCAGGTGCTTGATCGGATGT+TGG - Chr3:100517523-100517542 MsG0380017772.01.T01:CDS 50.0%
TTGGGAAGGGTTTACCTGTG+TGG - Chr3:100518630-100518649 MsG0380017772.01.T01:intron 50.0%
! CATAAACCTTTTCCTCGGCC+AGG + Chr3:100518511-100518530 None:intergenic 50.0%
! GCTCCGGGCATTGCTATTAA+TGG - Chr3:100516363-100516382 MsG0380017772.01.T01:three_prime_UTR 50.0%
! GGCAGAGCTCAAGACTTTTG+TGG - Chr3:100517574-100517593 MsG0380017772.01.T01:intron 50.0%
! TTAAAAGCAGGCGTTGCTGG+TGG + Chr3:100519402-100519421 None:intergenic 50.0%
! TTTTCTGCGTAGGCTGGGAA+AGG - Chr3:100517740-100517759 MsG0380017772.01.T01:intron 50.0%
!! AGGGAGCATTATCAAGGTCC+AGG + Chr3:100519455-100519474 None:intergenic 50.0%
!! CAAGGGAAAAAGTGCTCCCT+TGG - Chr3:100519125-100519144 MsG0380017772.01.T01:CDS 50.0%
!! CTTATGGCTGGTCTCACTCT+TGG - Chr3:100516560-100516579 MsG0380017772.01.T01:three_prime_UTR 50.0%
!! GGTATGCTTCGCTGGTCTTA+TGG - Chr3:100516544-100516563 MsG0380017772.01.T01:three_prime_UTR 50.0%
!!! CTGGGAATATTTTGGCGGCA+TGG + Chr3:100516652-100516671 None:intergenic 50.0%
CCAACAACCACTTCGTTGGG+TGG + Chr3:100519489-100519508 None:intergenic 55.0%
CCACCCAACGAAGTGGTTGT+TGG - Chr3:100519486-100519505 MsG0380017772.01.T01:intron 55.0%
CGTGTTTCCACCCAACGAAG+TGG - Chr3:100519479-100519498 MsG0380017772.01.T01:intron 55.0%
GCTGCAGAGATAGGATGCTG+TGG - Chr3:100516482-100516501 MsG0380017772.01.T01:three_prime_UTR 55.0%
TTGGGTGGAAACACGGGCAA+GGG + Chr3:100519474-100519493 None:intergenic 55.0%
!! AAAAGTACTAGGCCTGGCCG+AGG - Chr3:100518496-100518515 MsG0380017772.01.T01:intron 55.0%
!! CGGGCAAGGGAGCATTATCA+AGG + Chr3:100519461-100519480 None:intergenic 55.0%
!! TGCTTCGCTGGTCTTATGGC+TGG - Chr3:100516548-100516567 MsG0380017772.01.T01:three_prime_UTR 55.0%
!! TTCAAGGGCACCGGCTATGA+TGG + Chr3:100517792-100517811 None:intergenic 55.0%
ACTAGGCCTGGCCGAGGAAA+AGG - Chr3:100518502-100518521 MsG0380017772.01.T01:intron 60.0%
GCGGCATGGATGCGATGATG+AGG + Chr3:100516638-100516657 None:intergenic 60.0%
GTTGGGTGGAAACACGGGCA+AGG + Chr3:100519475-100519494 None:intergenic 60.0%
TCTGCGTAGGCTGGGAAAGG+AGG - Chr3:100517743-100517762 MsG0380017772.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100516312 100520603 100516312 ID=MsG0380017772.01;Name=MsG0380017772.01
Chr3 mRNA 100516312 100520603 100516312 ID=MsG0380017772.01.T01;Parent=MsG0380017772.01;Name=MsG0380017772.01.T01;_AED=0.33;_eAED=0.33;_QI=167|0.9|0.90|1|1|1|11|375|447
Chr3 exon 100516312 100516867 100516312 ID=MsG0380017772.01.T01:exon:2832;Parent=MsG0380017772.01.T01
Chr3 exon 100517052 100517098 100517052 ID=MsG0380017772.01.T01:exon:2831;Parent=MsG0380017772.01.T01
Chr3 exon 100517367 100517590 100517367 ID=MsG0380017772.01.T01:exon:2830;Parent=MsG0380017772.01.T01
Chr3 exon 100517896 100517945 100517896 ID=MsG0380017772.01.T01:exon:2829;Parent=MsG0380017772.01.T01
Chr3 exon 100518043 100518116 100518043 ID=MsG0380017772.01.T01:exon:2828;Parent=MsG0380017772.01.T01
Chr3 exon 100518849 100518936 100518849 ID=MsG0380017772.01.T01:exon:2827;Parent=MsG0380017772.01.T01
Chr3 exon 100519024 100519163 100519024 ID=MsG0380017772.01.T01:exon:2826;Parent=MsG0380017772.01.T01
Chr3 exon 100519302 100519388 100519302 ID=MsG0380017772.01.T01:exon:2825;Parent=MsG0380017772.01.T01
Chr3 exon 100519767 100519880 100519767 ID=MsG0380017772.01.T01:exon:2824;Parent=MsG0380017772.01.T01
Chr3 exon 100520001 100520084 100520001 ID=MsG0380017772.01.T01:exon:2823;Parent=MsG0380017772.01.T01
Chr3 exon 100520182 100520603 100520182 ID=MsG0380017772.01.T01:exon:2822;Parent=MsG0380017772.01.T01
Chr3 five_prime_UTR 100520437 100520603 100520437 ID=MsG0380017772.01.T01:five_prime_utr;Parent=MsG0380017772.01.T01
Chr3 CDS 100520182 100520436 100520182 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100520001 100520084 100520001 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100519767 100519880 100519767 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100519302 100519388 100519302 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100519024 100519163 100519024 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100518849 100518936 100518849 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100518043 100518116 100518043 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100517896 100517945 100517896 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100517367 100517590 100517367 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100517052 100517098 100517052 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 CDS 100516687 100516867 100516687 ID=MsG0380017772.01.T01:cds;Parent=MsG0380017772.01.T01
Chr3 three_prime_UTR 100516312 100516686 100516312 ID=MsG0380017772.01.T01:three_prime_utr;Parent=MsG0380017772.01.T01
Gene Sequence

>MsG0380017772.01.T01

ATGGCTGCAGAGATAGGATGCTGTGGAACTAAATTCTGGCTGTACATATTGATAATCATAGGATTGGTATGCTTCGCTGGTCTTATGGCTGGTCTCACTCTTGGACTCATGTCTTTAGGTCTCGTCGACCTTGAAGTTCTCATCAAATCTGGTCGTCCTCATCATCGCATCCATGCCGCCAAAATATTCCCAGTTGTTAAGAATCAGCATCTTTTGCTTTGTACTCTTTTGATCGGAAATTCATTAGCTATGGAGACTCTTCCTATTTTTCTTGATGCTATTGTGCCACCTTATGCTGCTGTCTTGATTTCGGTTACCCTAATTCTCATCTTTGGAGAGATATTGCCTCAAGCTGTTTGTACACGATACGGATTGATGGTTGGAGCTACACTAGCGCCGCTTGTTCGTGTTCTTCTTTTAGTATTCTATCCCATAGCTTATCCCATAAGCAAGGTGCTTGATCGGATGTTGGGTAAAGGAAAAGCTGCTCTGTTAAAGAGGGCAGAGCTCAAGACTTTTGTGGATTTTCATGGCAATGAGGCTGGGAAAGGAGGAGATTTAACGCATGATGAGACAACCATCATAGCCGGTGCCCTTGAATTGACTGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATTTGGATGCAACTCTAAATTTGGAGACCCTGAATTCAATAATGACAATGGGTCATAGTAGAGTCCCAGTTTATGCAGGAGAGCGAACAAACATTATGGGACTTGTTCTGGTTAAAAATCTCTTTATGGTTGATTCAAAGGCTGCAGTTCCTCTAAGAAAAATGATCATCAGAAAAATTCCTCGTGTTTCAGAGAATATGCCTCTGTATGATATACTGAATGAATTTCAGAAGGGTACAGTGTTGGAGTCACACGATACTGTGACTGCTGGTAGTAAGATTGACGGCGGTCCACAAGTGAAAAAAAGTCCACCAGCAACGCCTGCTTTTAAAAAGCGGCATAGAGGTTGTTCATATTGCATCCTGGACCTTGATAATGCTCCCTTGCCCGTGTTTCCACCCAACGAAGTGGTTGTTGGTGTTATTTCAATGGAGGATGTAATCGAAGAGCTTCTTCAGGAGGAGATACTTGATGAAACTGATGAATATGTTAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCTAAGGAGAAGGCTCCTGATGCAAATCTGTTGCAGCCTTCTAATTTAGCAGTTCAAGGACACACACCAACTAATTCGATTTCTACAGCTACTTCTGCAACGGGTTCACCTACCACCATTGATCAAATATCGGAAAGTGAGTCACTCAGGAATCAATAA
Protein sequence

>MsG0380017772.01.T01

MAAEIGCCGTKFWLYILIIIGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPHHRIHAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDAIVPPYAAVLISVTLILIFGEILPQAVCTRYGLMVGATLAPLVRVLLLVFYPIAYPISKVLDRMLGKGKAALLKRAELKTFVDFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTMGHSRVPVYAGERTNIMGLVLVKNLFMVDSKAAVPLRKMIIRKIPRVSENMPLYDILNEFQKGTVLESHDTVTAGSKIDGGPQVKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPNEVVVGVISMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKAPDANLLQPSNLAVQGHTPTNSISTATSATGSPTTIDQISESESLRNQ*