AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018090.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018090.01.T01 MTR_4g005090 97.175 177 3 1 1 177 2 176 5.68e-116 343
MsG0480018090.01.T01 MTR_4g005090 76.667 60 13 1 195 253 291 350 3.59e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018090.01.T01 AT3G13050 76.331 169 40 0 9 177 2 170 1.14e-78 248
MsG0480018090.01.T01 AT3G13050 56.667 60 24 1 196 253 290 349 3.01e-11 64.3
MsG0480018090.01.T01 AT3G13050 76.331 169 40 0 9 177 2 170 1.14e-78 248
MsG0480018090.01.T01 AT3G13050 56.667 60 24 1 196 253 290 349 3.01e-11 64.3
MsG0480018090.01.T01 AT3G13050 76.331 169 40 0 9 177 2 170 1.14e-78 248
MsG0480018090.01.T01 AT3G13050 56.667 60 24 1 196 253 290 349 3.01e-11 64.3
MsG0480018090.01.T01 AT3G13050 76.331 169 40 0 9 177 2 170 1.14e-78 248
MsG0480018090.01.T01 AT3G13050 56.667 60 24 1 196 253 290 349 3.01e-11 64.3

Find 76 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4:+108271 MsG0480018090.01.T01:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4:-108374 None:intergenic
GAAGGGTTGACCTTGATAAT+TGG 0.216503 4:-108263 None:intergenic
ACAAGCAAGGAGACATAATT+TGG 0.223234 4:-106139 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4:+105839 MsG0480018090.01.T01:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4:+106169 MsG0480018090.01.T01:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4:+106168 MsG0480018090.01.T01:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 4:+105845 MsG0480018090.01.T01:CDS
GGCATCAATCATACATTTCC+CGG 0.322798 4:-108485 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4:+106163 MsG0480018090.01.T01:CDS
AAAACACTGCCCATAATAGA+AGG 0.371337 4:-108281 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4:-106238 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4:-106138 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4:+108272 MsG0480018090.01.T01:CDS
AAGGGTTGACCTTGATAATT+GGG 0.409813 4:-108262 None:intergenic
ATGATGTTACTCTCATTTGT+AGG 0.412623 4:+105929 MsG0480018090.01.T01:CDS
TCGTTTACGCCGGCATTGGT+TGG 0.434274 4:+105888 MsG0480018090.01.T01:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4:+109479 MsG0480018090.01.T01:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4:+106026 MsG0480018090.01.T01:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4:+106175 MsG0480018090.01.T01:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4:-105953 None:intergenic
AACACCTTTGTAACTTACCC+TGG 0.458594 4:-108400 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4:+106061 MsG0480018090.01.T01:CDS
CTCCTTTCACCCAATTATCA+AGG 0.471462 4:+108253 MsG0480018090.01.T01:CDS
GTAAGCACCAATTAACATTC+CGG 0.476951 4:-106020 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4:+105773 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4:+106027 MsG0480018090.01.T01:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 4:+105884 MsG0480018090.01.T01:CDS
AATCATACATTTCCCGGGAA+TGG 0.498062 4:-108479 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 4:-105897 None:intergenic
GACCTTGATAATTGGGTGAA+AGG 0.507816 4:-108255 None:intergenic
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4:-108373 None:intergenic
GGACAGAGAACTAAAGAAAC+CGG 0.516024 4:-106116 None:intergenic
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 4:+105904 MsG0480018090.01.T01:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4:+109482 MsG0480018090.01.T01:CDS
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4:+106226 MsG0480018090.01.T01:CDS
GCTACTGTTACTGCTACTGC+CGG 0.538066 4:+106097 MsG0480018090.01.T01:CDS
ACACCTTTGTAACTTACCCT+GGG 0.539315 4:-108399 None:intergenic
TATGAAACTTTCTTGATGAG+AGG 0.540801 4:-105981 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4:+106233 MsG0480018090.01.T01:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4:+109470 MsG0480018090.01.T01:CDS
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4:+106172 MsG0480018090.01.T01:CDS
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4:+109499 MsG0480018090.01.T01:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4:-106251 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4:-109465 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4:-106232 None:intergenic
CTCCCAAACCAAGACCAACA+AGG 0.572336 4:-106171 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4:-106199 None:intergenic
GCATCAATCATACATTTCCC+GGG 0.575504 4:-108484 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4:+105788 MsG0480018090.01.T01:CDS
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4:-105976 None:intergenic
TCCCAAACCAAGACCAACAA+GGG 0.583537 4:-106170 None:intergenic
TTAATTGGTGCTTACTCATG+GGG 0.587279 4:+106028 MsG0480018090.01.T01:CDS
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4:+109469 MsG0480018090.01.T01:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4:+105951 MsG0480018090.01.T01:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4:+109446 MsG0480018090.01.T01:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4:-109447 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4:+106194 MsG0480018090.01.T01:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4:+106053 MsG0480018090.01.T01:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.606765 4:+108382 MsG0480018090.01.T01:CDS
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4:+106237 MsG0480018090.01.T01:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4:-108329 None:intergenic
TTGCAGACAGAGAAGTCCCA+GGG 0.614343 4:+108383 MsG0480018090.01.T01:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4:+109452 MsG0480018090.01.T01:CDS
AGTCCCAGGGTAAGTTACAA+AGG 0.633233 4:+108396 MsG0480018090.01.T01:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4:+106049 MsG0480018090.01.T01:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4:-109446 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4:-108280 None:intergenic
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4:-106233 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4:+105774 None:intergenic
TGGGTGAAAGGAGCACTCGA+AGG 0.658594 4:-108243 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 4:+105878 MsG0480018090.01.T01:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 4:-109462 None:intergenic
AAGCAAGGAGACATAATTTG+GGG 0.695881 4:-106137 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4:+105775 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4:-106209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTATAAAAAAAAAA+AGG - Chr4:110864-110883 None:intergenic 0.0%
!!! TTTTTTTTTTTTAATATATA+GGG + Chr4:112687-112706 MsG0480018090.01.T01:intron 0.0%
!!! TTTTTTTTTTTTTAATATAT+AGG + Chr4:112686-112705 MsG0480018090.01.T01:intron 0.0%
!! AATAAAATGCAATATATAAT+TGG - Chr4:111744-111763 None:intergenic 10.0%
!! CTTAACAAAATTAATAAATA+AGG - Chr4:110578-110597 None:intergenic 10.0%
!! CTTAAGTTAAATAAATAAAA+AGG + Chr4:112271-112290 MsG0480018090.01.T01:intron 10.0%
!! TATTGTCAAAAAAAAAAAAA+AGG - Chr4:110808-110827 None:intergenic 10.0%
!!! CTTTTTATTTATTTAACTTA+AGG - Chr4:112273-112292 None:intergenic 10.0%
!!! TTTATTGTTTAAAATGATTT+AGG + Chr4:110264-110283 MsG0480018090.01.T01:intron 10.0%
!!! TTTATTTTTCTATAAAGAAT+TGG + Chr4:113178-113197 MsG0480018090.01.T01:intron 10.0%
!! AAAATATTGCTTCAAAAAAA+AGG - Chr4:111337-111356 None:intergenic 15.0%
!! AATGATAAAGGAAAAAAATT+CGG - Chr4:111874-111893 None:intergenic 15.0%
!! AGAAAAAATAAAGCAAATTA+TGG + Chr4:109152-109171 MsG0480018090.01.T01:intron 15.0%
!! ATTAGAACTAAATTAAATCA+AGG - Chr4:107498-107517 None:intergenic 15.0%
!! ATTATAGAAAAAGTTGTTTA+AGG - Chr4:111959-111978 None:intergenic 15.0%
!! CAAAATATTGTCAAAAAAAA+AGG - Chr4:110747-110766 None:intergenic 15.0%
!! TAAGTTCAAAATTGAAATAA+AGG - Chr4:107426-107445 None:intergenic 15.0%
!! TATAAGAAAAGATAGAAATA+TGG + Chr4:106569-106588 MsG0480018090.01.T01:intron 15.0%
!! TATATATAATTGAAATATGG+TGG + Chr4:106432-106451 MsG0480018090.01.T01:intron 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG + Chr4:107585-107604 MsG0480018090.01.T01:intron 15.0%
!! TTATAGAAAAAGTTGTTTAA+GGG - Chr4:111958-111977 None:intergenic 15.0%
!! TTTACAACTATTTAAATTGA+GGG - Chr4:107585-107604 None:intergenic 15.0%
!!! AATATGAATTTTTAGTACAT+TGG - Chr4:111597-111616 None:intergenic 15.0%
!!! ATGATGAATTATTTTGTAAA+TGG + Chr4:112716-112735 MsG0480018090.01.T01:intron 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG - Chr4:109152-109171 None:intergenic 15.0%
!!! TGATGAATTATTTTGTAAAT+GGG + Chr4:112717-112736 MsG0480018090.01.T01:intron 15.0%
!!! TTAATAAATAAGGATTTGTT+AGG - Chr4:111387-111406 None:intergenic 15.0%
!!! TTACACTTTTTAAATGATAA+AGG - Chr4:111886-111905 None:intergenic 15.0%
!!! TTTATTAATTTTGAATGATC+TGG + Chr4:108747-108766 MsG0480018090.01.T01:intron 15.0%
!!! TTTTTTTAGTAAATTGTAGA+GGG + Chr4:109883-109902 MsG0480018090.01.T01:intron 15.0%
!!! TTTTTTTTAGTAAATTGTAG+AGG + Chr4:109882-109901 MsG0480018090.01.T01:intron 15.0%
!! AAAGGAATGATTTCTAATTT+AGG + Chr4:108209-108228 MsG0480018090.01.T01:intron 20.0%
!! AAATGAACATGGTTAATTTA+AGG + Chr4:109926-109945 MsG0480018090.01.T01:intron 20.0%
!! AAATTAAATCAAGGAGATTT+GGG - Chr4:107489-107508 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG - Chr4:108209-108228 None:intergenic 20.0%
!! AAGAATGTTATTATCTTAAG+GGG + Chr4:108933-108952 MsG0480018090.01.T01:intron 20.0%
!! AAGATAACACACAAAATAAA+AGG - Chr4:110053-110072 None:intergenic 20.0%
!! AAGGATAGCAAAAAAAAAAA+AGG - Chr4:110721-110740 None:intergenic 20.0%
!! AGAAGAATGTTATTATCTTA+AGG + Chr4:108931-108950 MsG0480018090.01.T01:intron 20.0%
!! AGGATAGCAAAAAAAAAAAA+GGG - Chr4:110720-110739 None:intergenic 20.0%
!! AGGTAAATGATAAAAGTAAA+TGG - Chr4:107750-107769 None:intergenic 20.0%
!! ATTGTGACCTTAAATAAATA+TGG - Chr4:112536-112555 None:intergenic 20.0%
!! CAATGAAAATAAAATGAACA+TGG + Chr4:109915-109934 MsG0480018090.01.T01:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG + Chr4:108932-108951 MsG0480018090.01.T01:intron 20.0%
!! GGTAAATGATAAAAGTAAAT+GGG - Chr4:107749-107768 None:intergenic 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG + Chr4:109380-109399 MsG0480018090.01.T01:intron 20.0%
!! GTTTACAACTATTTAAATTG+AGG - Chr4:107586-107605 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG - Chr4:107490-107509 None:intergenic 20.0%
!! TAATTCTTCTTTATAAATGG+TGG + Chr4:109383-109402 MsG0480018090.01.T01:intron 20.0%
!! TTAAAACTACCCTTAAATAT+CGG - Chr4:112420-112439 None:intergenic 20.0%
!! TTGCAAACCATATTTATTTA+AGG + Chr4:112526-112545 MsG0480018090.01.T01:intron 20.0%
!!! AAAAAAAAAAGGCATGAAAT+TGG - Chr4:110797-110816 None:intergenic 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG + Chr4:106951-106970 MsG0480018090.01.T01:intron 20.0%
!!! AGATAAATAGTTTTGTTTTC+CGG - Chr4:113073-113092 None:intergenic 20.0%
!!! ATATTTATTTAAGGTCACAA+TGG + Chr4:112535-112554 MsG0480018090.01.T01:intron 20.0%
!!! CATATTTAGTATAGTCTTAT+TGG - Chr4:108894-108913 None:intergenic 20.0%
!!! GATTGTATTTTCGTATAAAA+AGG - Chr4:107718-107737 None:intergenic 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG - Chr4:106561-106580 None:intergenic 20.0%
!!! TTCTTTTACGAATTATTGAT+AGG + Chr4:111616-111635 MsG0480018090.01.T01:intron 20.0%
!!! TTTACTTTTATCATTTACCT+AGG + Chr4:107750-107769 MsG0480018090.01.T01:intron 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG + Chr4:109061-109080 MsG0480018090.01.T01:intron 20.0%
!!! TTTTTTAGTAAATTGTAGAG+GGG + Chr4:109884-109903 MsG0480018090.01.T01:intron 20.0%
!!! TTTTTTTAGATGGAATTGTT+AGG - Chr4:111282-111301 None:intergenic 20.0%
! AAAATGTGTTAATTAACTCG+GGG + Chr4:112295-112314 MsG0480018090.01.T01:intron 25.0%
! AAATAAAGGCTTAAGCAAAT+TGG - Chr4:107412-107431 None:intergenic 25.0%
! AAGTATGTAAGGAAAGAATA+TGG + Chr4:106905-106924 MsG0480018090.01.T01:intron 25.0%
! AATAGTTCCTATCTAATAAC+TGG - Chr4:109307-109326 None:intergenic 25.0%
! AATATAGTGAGTAGTGAAAT+AGG + Chr4:106870-106889 MsG0480018090.01.T01:intron 25.0%
! AATTCAAAAACAATGAGGTA+GGG - Chr4:109241-109260 None:intergenic 25.0%
! AATTGAACCCTCAAAATATA+TGG - Chr4:112121-112140 None:intergenic 25.0%
! ACAAAATAAAAGGAGAGAAT+AGG - Chr4:110043-110062 None:intergenic 25.0%
! ACAATTCAACTAGCAAAAAT+GGG + Chr4:112384-112403 MsG0480018090.01.T01:intron 25.0%
! ACAGCATTATTAACTTCAAA+TGG + Chr4:109007-109026 MsG0480018090.01.T01:intron 25.0%
! ATAAATATACACGATTGTGA+AGG - Chr4:108696-108715 None:intergenic 25.0%
! ATTAAGAGTGATTCTCATTA+TGG - Chr4:112446-112465 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG - Chr4:108829-108848 None:intergenic 25.0%
! CAAATGAGCAGAAAAAAATT+AGG - Chr4:111235-111254 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG - Chr4:108115-108134 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG - Chr4:109246-109265 None:intergenic 25.0%
! GAAAATGTGTTAATTAACTC+GGG + Chr4:112294-112313 MsG0480018090.01.T01:intron 25.0%
! GGAAAATGTGTTAATTAACT+CGG + Chr4:112293-112312 MsG0480018090.01.T01:intron 25.0%
! GTCATTGAAATAGATAATCA+TGG + Chr4:112037-112056 MsG0480018090.01.T01:intron 25.0%
! GTCTTCATTTAGTATGAATA+TGG - Chr4:110190-110209 None:intergenic 25.0%
! TAAAACTACCCTTAAATATC+GGG - Chr4:112419-112438 None:intergenic 25.0%
! TAAAATTCTTTCTTGCATGA+AGG - Chr4:107555-107574 None:intergenic 25.0%
! TAACAAATCCGTAAAAGAAT+TGG - Chr4:109072-109091 None:intergenic 25.0%
! TAAGCAAAAATCAACATTCT+AGG - Chr4:111042-111061 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG + Chr4:109276-109295 MsG0480018090.01.T01:intron 25.0%
! TAATTCAAAAACAATGAGGT+AGG - Chr4:109242-109261 None:intergenic 25.0%
! TACTAACTTAGAAACCTAAA+AGG - Chr4:111146-111165 None:intergenic 25.0%
! TAGTACTATTGTATAGCAAT+TGG + Chr4:108856-108875 MsG0480018090.01.T01:intron 25.0%
! TCACATTTAATGAATGCTTA+CGG - Chr4:110979-110998 None:intergenic 25.0%
! TTGTCAAAAAAAAAGGCAAA+AGG - Chr4:110740-110759 None:intergenic 25.0%
!! AAGTTGTTTAAGGGTATAAT+TGG - Chr4:111949-111968 None:intergenic 25.0%
!! ACTTAACATGTATTTTCTCA+CGG + Chr4:111426-111445 MsG0480018090.01.T01:intron 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG + Chr4:106894-106913 MsG0480018090.01.T01:intron 25.0%
!! AGTTGTTTAAGGGTATAATT+GGG - Chr4:111948-111967 None:intergenic 25.0%
!! ATGATTTAGGATTTAATCCT+TGG + Chr4:110277-110296 MsG0480018090.01.T01:intron 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG + Chr4:106952-106971 MsG0480018090.01.T01:intron 25.0%
!! ATTGAAATATGGTGGAAATT+AGG + Chr4:106440-106459 MsG0480018090.01.T01:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG - Chr4:110956-110975 None:intergenic 25.0%
!! CAATGTGTTTTACTTAACAA+AGG + Chr4:106950-106969 MsG0480018090.01.T01:intron 25.0%
!! TAACACTTCCATATATTTTG+AGG + Chr4:112110-112129 MsG0480018090.01.T01:intron 25.0%
!! TTGAAAATTGAGGACATTTT+TGG - Chr4:110518-110537 None:intergenic 25.0%
!! TTGAAATATGGTGGAAATTA+GGG + Chr4:106441-106460 MsG0480018090.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + Chr4:111052-111071 MsG0480018090.01.T01:intron 25.0%
!!! AACACTTCCATATATTTTGA+GGG + Chr4:112111-112130 MsG0480018090.01.T01:intron 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG - Chr4:108184-108203 None:intergenic 25.0%
!!! ATTTGATGATTTTCCAAGAA+AGG + Chr4:112356-112375 MsG0480018090.01.T01:intron 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG + Chr4:108306-108325 MsG0480018090.01.T01:CDS 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG - Chr4:109188-109207 None:intergenic 25.0%
!!! TTAGTATAGTCTTATTGGAT+TGG - Chr4:108889-108908 None:intergenic 25.0%
!!! TTTTTTTGCCAGTTAATTGT+TGG - Chr4:107658-107677 None:intergenic 25.0%
AAACAAATGCAAACTATACC+TGG + Chr4:109203-109222 MsG0480018090.01.T01:intron 30.0%
AAAGAATCGATGTGAATGAA+TGG + Chr4:113233-113252 MsG0480018090.01.T01:intron 30.0%
AAATAAAAGGAGAGAATAGG+AGG - Chr4:110040-110059 None:intergenic 30.0%
AAATGAGCGGGAAAAAAATT+AGG - Chr4:110616-110635 None:intergenic 30.0%
AAATTAGGGTTAAGTGGTTT+GGG + Chr4:106455-106474 MsG0480018090.01.T01:intron 30.0%
AAGAATCGATGTGAATGAAT+GGG + Chr4:113234-113253 MsG0480018090.01.T01:intron 30.0%
AATATGGATCTCTTGAATCA+AGG + Chr4:106921-106940 MsG0480018090.01.T01:intron 30.0%
AGTCAAATCACTATTTACAG+AGG + Chr4:106531-106550 MsG0480018090.01.T01:intron 30.0%
AGTTGGTTAGTATTTAGATG+AGG + Chr4:106845-106864 MsG0480018090.01.T01:intron 30.0%
ATATCACCTAAATTGATCGA+AGG - Chr4:112772-112791 None:intergenic 30.0%
ATATTGATCACTGATGAAGA+TGG + Chr4:111501-111520 MsG0480018090.01.T01:intron 30.0%
ATCTCCATCAAAGAATCTAT+AGG - Chr4:110353-110372 None:intergenic 30.0%
ATGATGTTACTCTCATTTGT+AGG + Chr4:105929-105948 MsG0480018090.01.T01:CDS 30.0%
CAAAAAAAAGGCAAAAGGAT+AGG - Chr4:111325-111344 None:intergenic 30.0%
CAAAAGGATAGGAATGAAAT+TGG - Chr4:111314-111333 None:intergenic 30.0%
CAATATCTTTAGTCATTCTC+TGG - Chr4:111487-111506 None:intergenic 30.0%
CAATTCAACTAGCAAAAATG+GGG + Chr4:112385-112404 MsG0480018090.01.T01:intron 30.0%
CACAATTCAACTAGCAAAAA+TGG + Chr4:112383-112402 MsG0480018090.01.T01:intron 30.0%
GAACATGGTTAATTTAAGGA+GGG + Chr4:109930-109949 MsG0480018090.01.T01:intron 30.0%
GAAGTGGATAAGAATGAAAT+TGG - Chr4:110698-110717 None:intergenic 30.0%
GAGATAAGTTCTCAATATGA+AGG + Chr4:112743-112762 MsG0480018090.01.T01:intron 30.0%
GATGAAGCTCTTATAACATT+AGG + Chr4:105839-105858 MsG0480018090.01.T01:CDS 30.0%
GCAAAAAAAAAAAAGGGAAG+TGG - Chr4:110714-110733 None:intergenic 30.0%
GCTGTTTGTATTGAAAATTG+AGG - Chr4:110528-110547 None:intergenic 30.0%
GGAATGATTTCTAATTTAGG+TGG + Chr4:108212-108231 MsG0480018090.01.T01:intron 30.0%
GTAACAAAATGAGACATAAG+AGG + Chr4:106822-106841 MsG0480018090.01.T01:intron 30.0%
TACACATACAACATCTTGTT+TGG - Chr4:112972-112991 None:intergenic 30.0%
TAGAATCAGATAAGAGTCAA+GGG + Chr4:112328-112347 MsG0480018090.01.T01:intron 30.0%
TATGAAACTTTCTTGATGAG+AGG - Chr4:105984-106003 None:intergenic 30.0%
TCATATTGAGAACTTATCTC+TGG - Chr4:112743-112762 None:intergenic 30.0%
TGAACATGGTTAATTTAAGG+AGG + Chr4:109929-109948 MsG0480018090.01.T01:intron 30.0%
TGACAAATCATAGAGATGAT+GGG + Chr4:107877-107896 MsG0480018090.01.T01:intron 30.0%
TGCTTCAAAAAAAAGGCAAA+AGG - Chr4:111330-111349 None:intergenic 30.0%
TGGTTGAGTTAAAAGATTCA+AGG - Chr4:112159-112178 None:intergenic 30.0%
TTAGAATCAGATAAGAGTCA+AGG + Chr4:112327-112346 MsG0480018090.01.T01:intron 30.0%
TTTCTGCTCATTTGCAAATT+AGG + Chr4:111241-111260 MsG0480018090.01.T01:intron 30.0%
! ATGGACTGATTGAAAAAGTT+TGG - Chr4:109994-110013 None:intergenic 30.0%
! CTCAATATGAATCATCCTTT+TGG - Chr4:112618-112637 None:intergenic 30.0%
! GCTCTTATAACATTAGGTTT+TGG + Chr4:105845-105864 MsG0480018090.01.T01:CDS 30.0%
! GTCTCATTTTGTTACATTTG+CGG - Chr4:106817-106836 None:intergenic 30.0%
! TAACTCATCAGGACATTTTA+AGG - Chr4:112092-112111 None:intergenic 30.0%
! TTGATATTAAGGCTTTGTCT+GGG + Chr4:107023-107042 MsG0480018090.01.T01:intron 30.0%
! TTTCAATTTTGAACTTACCC+AGG + Chr4:107429-107448 MsG0480018090.01.T01:intron 30.0%
! TTTTGTGTATGGGTAGAATT+TGG + Chr4:110300-110319 MsG0480018090.01.T01:intron 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG + Chr4:107253-107272 MsG0480018090.01.T01:intron 30.0%
!! GATCTTTGAAACTATTCAGA+CGG + Chr4:113280-113299 MsG0480018090.01.T01:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG + Chr4:107091-107110 MsG0480018090.01.T01:intron 30.0%
!! TCAAATTTGATGATGCCAAA+AGG + Chr4:112600-112619 MsG0480018090.01.T01:intron 30.0%
!! TGATGACGTTTTATATACCT+CGG + Chr4:109688-109707 MsG0480018090.01.T01:intron 30.0%
!! TGTCTTTTGAAAACAGAAGA+AGG - Chr4:107990-108009 None:intergenic 30.0%
!! TTGTTTTACTATACCATTCC+CGG + Chr4:108466-108485 MsG0480018090.01.T01:CDS 30.0%
!! TTTTCATGATTTAAAGTCCG+AGG - Chr4:109708-109727 None:intergenic 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG + Chr4:106001-106020 MsG0480018090.01.T01:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG - Chr4:107255-107274 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG - Chr4:108185-108204 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG + Chr4:108420-108439 MsG0480018090.01.T01:CDS 30.0%
!!! TAATCCTTGGTTTTGTGTAT+GGG + Chr4:110290-110309 MsG0480018090.01.T01:intron 30.0%
!!! TTAATCCTTGGTTTTGTGTA+TGG + Chr4:110289-110308 MsG0480018090.01.T01:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG - Chr4:108183-108202 None:intergenic 30.0%
AAAAAACCGTTTACGCATCA+TGG + Chr4:113144-113163 MsG0480018090.01.T01:intron 35.0%
AAAACACTGCCCATAATAGA+AGG - Chr4:108284-108303 None:intergenic 35.0%
AAACACTGCCCATAATAGAA+GGG - Chr4:108283-108302 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG - Chr4:107980-107999 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG + Chr4:106828-106847 MsG0480018090.01.T01:intron 35.0%
AACAAATTCAAGAAACCACG+AGG - Chr4:106212-106231 None:intergenic 35.0%
AACAGAAGAAGGAAAGATGT+GGG - Chr4:107979-107998 None:intergenic 35.0%
AACCTAATACAGCAAATGAG+CGG - Chr4:110629-110648 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG - Chr4:105979-105998 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG - Chr4:106140-106159 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG + Chr4:108272-108291 MsG0480018090.01.T01:CDS 35.0%
AAGTTAGTAGTCTAGTCCAT+CGG + Chr4:111157-111176 MsG0480018090.01.T01:intron 35.0%
AATCATCAAAGGTAACTTCG+AGG + Chr4:109963-109982 MsG0480018090.01.T01:intron 35.0%
AATCTGCAAGGAACATTCAT+TGG - Chr4:107908-107927 None:intergenic 35.0%
AATGGCAAAAAACTTCCTTC+CGG + Chr4:108086-108105 MsG0480018090.01.T01:intron 35.0%
AATGTGTGCGAACGAATAAT+TGG - Chr4:109843-109862 None:intergenic 35.0%
ACAACACACATTGAACATCT+GGG - Chr4:113003-113022 None:intergenic 35.0%
ACAAGCAAGGAGACATAATT+TGG - Chr4:106142-106161 None:intergenic 35.0%
ACAATTCCATGATGCGTAAA+CGG - Chr4:113153-113172 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG - Chr4:107125-107144 None:intergenic 35.0%
ACCAAAACCCTTCAATATGT+AGG + Chr4:107114-107133 MsG0480018090.01.T01:intron 35.0%
AGGTTACCTTCGATCAATTT+AGG + Chr4:112763-112782 MsG0480018090.01.T01:intron 35.0%
AGTCCAAAAGAGATGTTGAA+AGG - Chr4:110483-110502 None:intergenic 35.0%
AGTCCATACAATTCTGAACT+TGG + Chr4:110007-110026 MsG0480018090.01.T01:intron 35.0%
AGTGAAGTTGAATCTCCTAA+AGG + Chr4:108191-108210 MsG0480018090.01.T01:intron 35.0%
ATATGCGAGCTCCAAATAAA+AGG - Chr4:108661-108680 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG + Chr4:107128-107147 MsG0480018090.01.T01:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG - Chr4:106720-106739 None:intergenic 35.0%
ATCTGCAAGGAACATTCATT+GGG - Chr4:107907-107926 None:intergenic 35.0%
ATGTGTAGCCAACAATTAAC+TGG + Chr4:107647-107666 MsG0480018090.01.T01:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG - Chr4:108108-108127 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG - Chr4:106141-106160 None:intergenic 35.0%
CACAGAGAACTAACTTTGTA+AGG - Chr4:109110-109129 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG - Chr4:107124-107143 None:intergenic 35.0%
CAGACAAAGCCTTAATATCA+AGG - Chr4:107024-107043 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG - Chr4:108622-108641 None:intergenic 35.0%
CATTTACCTAGGAAACTGTT+TGG + Chr4:107761-107780 MsG0480018090.01.T01:intron 35.0%
CTGACAAATCATAGAGATGA+TGG + Chr4:107876-107895 MsG0480018090.01.T01:intron 35.0%
CTTTCGTCATGTATAAGACA+TGG + Chr4:109337-109356 MsG0480018090.01.T01:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG + Chr4:106454-106473 MsG0480018090.01.T01:intron 35.0%
GAATGGAAGAATCTACTTTG+TGG + Chr4:110326-110345 MsG0480018090.01.T01:intron 35.0%
GAGAAATCTTGTGCATTCTT+CGG + Chr4:108788-108807 MsG0480018090.01.T01:intron 35.0%
GAGCTACAATTACAAACAGA+AGG - Chr4:109568-109587 None:intergenic 35.0%
GATAGAATGTTAATGGGAGA+AGG - Chr4:108616-108635 None:intergenic 35.0%
GATCCAAGTTCAGAATTGTA+TGG - Chr4:110013-110032 None:intergenic 35.0%
GCAATATCGCCTTGATATTA+AGG + Chr4:107012-107031 MsG0480018090.01.T01:intron 35.0%
GGAGATTAATCACCCTTAAA+CGG + Chr4:110367-110386 MsG0480018090.01.T01:intron 35.0%
GTAAGCACCAATTAACATTC+CGG - Chr4:106023-106042 None:intergenic 35.0%
GTCAACGTGACATTAAATCT+GGG - Chr4:113030-113049 None:intergenic 35.0%
GTCCAAAAGAGATGTTGAAA+GGG - Chr4:110482-110501 None:intergenic 35.0%
TACCTTGTCGACAATATGTT+GGG - Chr4:112486-112505 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG - Chr4:108623-108642 None:intergenic 35.0%
TCTCTGTCTGCAATTTATCT+GGG - Chr4:108376-108395 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG - Chr4:108721-108740 None:intergenic 35.0%
TGGACCTATAGATTCTTTGA+TGG + Chr4:110346-110365 MsG0480018090.01.T01:intron 35.0%
TGTCAACGTGACATTAAATC+TGG - Chr4:113031-113050 None:intergenic 35.0%
TTACCTTGTCGACAATATGT+TGG - Chr4:112487-112506 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG - Chr4:108377-108396 None:intergenic 35.0%
TTCTTGAGGAAGAAAAGAGA+GGG + Chr4:109757-109776 MsG0480018090.01.T01:intron 35.0%
TTCTTGCATGAAGGAATGAT+AGG - Chr4:107546-107565 None:intergenic 35.0%
TTGCATAAAGACATTACCTC+TGG - Chr4:108722-108741 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG - Chr4:108030-108049 None:intergenic 35.0%
TTTGGTCCAGATTAATGTCA+CGG - Chr4:112954-112973 None:intergenic 35.0%
! AAGGGTTGACCTTGATAATT+GGG - Chr4:108265-108284 None:intergenic 35.0%
! ATCCCTTTCAACATCTCTTT+TGG + Chr4:110477-110496 MsG0480018090.01.T01:intron 35.0%
! CATCATCTCTATGATTTGTC+AGG - Chr4:107878-107897 None:intergenic 35.0%
! CGAAGTTACCTTTGATGATT+TGG - Chr4:109963-109982 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG + Chr4:108285-108304 MsG0480018090.01.T01:CDS 35.0%
! CTTGATATTAAGGCTTTGTC+TGG + Chr4:107022-107041 MsG0480018090.01.T01:intron 35.0%
! GCACACATTCTTTTTGTGTT+TGG + Chr4:109854-109873 MsG0480018090.01.T01:intron 35.0%
! GGTTTCACAGCAATGTTTTT+CGG + Chr4:109358-109377 MsG0480018090.01.T01:intron 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG + Chr4:109575-109594 MsG0480018090.01.T01:intron 35.0%
! GTTAATTGGTGCTTACTCAT+GGG + Chr4:106027-106046 MsG0480018090.01.T01:CDS 35.0%
! GTTAATTGTTGGCTACACAT+AGG - Chr4:107647-107666 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG + Chr4:106013-106032 MsG0480018090.01.T01:CDS 35.0%
! TAAGGTACTCAAATACGAGT+TGG - Chr4:112255-112274 None:intergenic 35.0%
! TAGTTTTCATCGCCGTTTAA+GGG - Chr4:110382-110401 None:intergenic 35.0%
! TCATTTTGTTACATTTGCGG+AGG - Chr4:106814-106833 None:intergenic 35.0%
! TCCTACATATTGAAGGGTTT+TGG - Chr4:107118-107137 None:intergenic 35.0%
! TGATGATTTTCCAAGAAAGG+TGG + Chr4:112359-112378 MsG0480018090.01.T01:intron 35.0%
! TGTTAATTGGTGCTTACTCA+TGG + Chr4:106026-106045 MsG0480018090.01.T01:CDS 35.0%
! TGTTTTACTATACCATTCCC+GGG + Chr4:108467-108486 MsG0480018090.01.T01:CDS 35.0%
! TTAATTGGTGCTTACTCATG+GGG + Chr4:106028-106047 MsG0480018090.01.T01:CDS 35.0%
!! AATACGAGTTGGTCTTACTT+AGG - Chr4:112244-112263 None:intergenic 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG - Chr4:106986-107005 None:intergenic 35.0%
!! GTTTGGCTTTACTTGTCTTA+AGG + Chr4:107778-107797 MsG0480018090.01.T01:intron 35.0%
!! TACTTAAGAGTGTCTACACT+AGG + Chr4:106766-106785 MsG0480018090.01.T01:intron 35.0%
!! TATGGAAGTGTTAACTCATC+AGG - Chr4:112103-112122 None:intergenic 35.0%
!! TCAAGTTTTATCGCACCAAA+TGG - Chr4:106640-106659 None:intergenic 35.0%
!! TGTGCACTAGTAATTTGTTC+TGG - Chr4:109736-109755 None:intergenic 35.0%
!! TTGTTTCTGATCAACATGGA+AGG + Chr4:106053-106072 MsG0480018090.01.T01:CDS 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG + Chr4:106984-107003 MsG0480018090.01.T01:intron 35.0%
!!! GCTATTTCTTTTCAACTCAG+AGG - Chr4:108346-108365 None:intergenic 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - Chr4:111292-111311 None:intergenic 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG - Chr4:107250-107269 None:intergenic 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG + Chr4:106294-106313 MsG0480018090.01.T01:CDS 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG + Chr4:106293-106312 MsG0480018090.01.T01:CDS 35.0%
AAAAACCTCCACACAAGATG+GGG - Chr4:107081-107100 None:intergenic 40.0%
AACACCTTTGTAACTTACCC+TGG - Chr4:108403-108422 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG - Chr4:107974-107993 None:intergenic 40.0%
AAGGGAACGAAAAACAAGCA+AGG - Chr4:106155-106174 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG - Chr4:108482-108501 None:intergenic 40.0%
ACACAGTATCTTGCAGTTCT+TGG - Chr4:109637-109656 None:intergenic 40.0%
ACACCTTTGTAACTTACCCT+GGG - Chr4:108402-108421 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG - Chr4:108550-108569 None:intergenic 40.0%
ACCTAATACAGCAAATGAGC+GGG - Chr4:110628-110647 None:intergenic 40.0%
ACCTTGTCGACAATATGTTG+GGG - Chr4:112485-112504 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG - Chr4:107083-107102 None:intergenic 40.0%
AGTAAAACCGTGTCTTCTGA+AGG - Chr4:108158-108177 None:intergenic 40.0%
AGTTAGTAGTCTAGTCCATC+GGG + Chr4:111158-111177 MsG0480018090.01.T01:intron 40.0%
ATATTGCACTCACCTTCCTT+TGG - Chr4:106999-107018 None:intergenic 40.0%
ATGTCACCGTGACATTAATC+TGG + Chr4:112945-112964 MsG0480018090.01.T01:intron 40.0%
ATTCTCTCTCCTTCTCCATT+TGG - Chr4:110159-110178 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG - Chr4:108649-108668 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG + Chr4:108271-108290 MsG0480018090.01.T01:CDS 40.0%
CACAACACACATTGAACATC+TGG - Chr4:113004-113023 None:intergenic 40.0%
CACCATCACCCGATATTTAA+GGG + Chr4:112408-112427 MsG0480018090.01.T01:intron 40.0%
CATTGTAACAGAGGAAAGCT+AGG - Chr4:106711-106730 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG + Chr4:108019-108038 MsG0480018090.01.T01:intron 40.0%
CCTTTCAAGCATAGGTATCT+TGG - Chr4:108022-108041 None:intergenic 40.0%
CGAACGTGTTATCAAGAATC+AGG - Chr4:110901-110920 None:intergenic 40.0%
CTACGAGTTTAACTGCAAAC+TGG - Chr4:107343-107362 None:intergenic 40.0%
CTCCTTTCACCCAATTATCA+AGG + Chr4:108253-108272 MsG0480018090.01.T01:CDS 40.0%
GAAAAACCTCCACACAAGAT+GGG - Chr4:107082-107101 None:intergenic 40.0%
GACAATTGAAGCTGCAAATG+TGG + Chr4:110223-110242 MsG0480018090.01.T01:intron 40.0%
GACGTCTAATGTCGTATATG+AGG + Chr4:111539-111558 MsG0480018090.01.T01:intron 40.0%
GATCAACATGGAAGGAGAAA+AGG + Chr4:106061-106080 MsG0480018090.01.T01:CDS 40.0%
GATGTTCAATGTGTGTTGTG+TGG + Chr4:113004-113023 MsG0480018090.01.T01:intron 40.0%
GCAAGTAGCCAAATCATCAA+AGG + Chr4:109952-109971 MsG0480018090.01.T01:intron 40.0%
GCATAAAGACATTACCTCTG+GGG - Chr4:108720-108739 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG - Chr4:108487-108506 None:intergenic 40.0%
GGACAGAGAACTAAAGAAAC+CGG - Chr4:106119-106138 None:intergenic 40.0%
GGAGACATAGCAAGACTAAA+TGG + Chr4:108068-108087 MsG0480018090.01.T01:intron 40.0%
GGATATATAGTAAAGCCCGA+TGG - Chr4:111176-111195 None:intergenic 40.0%
GGATCTCTTGAATCAAGGAA+AGG + Chr4:106926-106945 MsG0480018090.01.T01:intron 40.0%
GGCATCAATCATACATTTCC+CGG - Chr4:108488-108507 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG - Chr4:107322-107341 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG + Chr4:109297-109316 MsG0480018090.01.T01:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG - Chr4:108157-108176 None:intergenic 40.0%
GTAAAGCCAAACAGTTTCCT+AGG - Chr4:107770-107789 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG - Chr4:106765-106784 None:intergenic 40.0%
GTGTATGGGTAGAATTTGGT+CGG + Chr4:110304-110323 MsG0480018090.01.T01:intron 40.0%
GTTCTTGAGGAAGAAAAGAG+AGG + Chr4:109756-109775 MsG0480018090.01.T01:intron 40.0%
TACACTTAGACCTGAATCCT+GGG - Chr4:107449-107468 None:intergenic 40.0%
TACCCTTAAATATCGGGTGA+TGG - Chr4:112413-112432 None:intergenic 40.0%
TACGACATTAGACGTCACAT+TGG - Chr4:111535-111554 None:intergenic 40.0%
TAGTTCAACAATAGGCCCAT+GGG - Chr4:112209-112228 None:intergenic 40.0%
TCATCATGTCTACACATCGT+CGG - Chr4:109674-109693 None:intergenic 40.0%
TCTACACTAGGAGAGAAAAG+AGG + Chr4:106778-106797 MsG0480018090.01.T01:intron 40.0%
TCTACCCATACACAAAACCA+AGG - Chr4:110297-110316 None:intergenic 40.0%
TGAATTGTGACCACCTTTCT+TGG - Chr4:112372-112391 None:intergenic 40.0%
TGCATGAAGGAATGATAGGA+AGG - Chr4:107542-107561 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr4:111056-111075 MsG0480018090.01.T01:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - Chr4:111075-111056 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG + Chr4:106449-106468 MsG0480018090.01.T01:intron 40.0%
TGGTGGAATGTTATGTCCAT+TGG + Chr4:109499-109518 MsG0480018090.01.T01:CDS 40.0%
TGGTTGGATTTCAGAAGCAA+TGG + Chr4:105904-105923 MsG0480018090.01.T01:CDS 40.0%
TGTACCAACAGTCCAAAAAC+CGG - Chr4:106272-106291 None:intergenic 40.0%
TGTGTTAATTAACTCGGGGA+AGG + Chr4:112299-112318 MsG0480018090.01.T01:intron 40.0%
TTACTAGTGCACAGTTCTTG+AGG + Chr4:109743-109762 MsG0480018090.01.T01:intron 40.0%
TTCTTTACAGTAAACCCGAG+CGG + Chr4:111778-111797 MsG0480018090.01.T01:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr4:111055-111074 MsG0480018090.01.T01:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - Chr4:111074-111055 None:intergenic 40.0%
TTTATCGCACCAAATGGAGT+TGG - Chr4:106634-106653 None:intergenic 40.0%
TTTGAACTTACCCAGGATTC+AGG + Chr4:107436-107455 MsG0480018090.01.T01:intron 40.0%
! ATTGTTGGCTACACATAGGA+AGG - Chr4:107643-107662 None:intergenic 40.0%
! CAACTGAGCAACTAACGTTT+TGG + Chr4:108047-108066 MsG0480018090.01.T01:intron 40.0%
! CTAACAACGGGCCTTTTATT+TGG + Chr4:108647-108666 MsG0480018090.01.T01:intron 40.0%
! GAAGGGTTGACCTTGATAAT+TGG - Chr4:108266-108285 None:intergenic 40.0%
! GACCTTGATAATTGGGTGAA+AGG - Chr4:108258-108277 None:intergenic 40.0%
! GCTCTATTGTTGTGCCTTTT+AGG + Chr4:111129-111148 MsG0480018090.01.T01:intron 40.0%
! GTAGCTCTGTGCACAAAATT+TGG - Chr4:108509-108528 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG - Chr4:109224-109243 None:intergenic 40.0%
! GTAGTTTTCATCGCCGTTTA+AGG - Chr4:110383-110402 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG + Chr4:107141-107160 MsG0480018090.01.T01:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG + Chr4:106257-106276 MsG0480018090.01.T01:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG + Chr4:109509-109528 MsG0480018090.01.T01:intron 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG + Chr4:109611-109630 MsG0480018090.01.T01:intron 40.0%
!! AGTTGGTCTTACTTAGGTCA+TGG - Chr4:112238-112257 None:intergenic 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG - Chr4:107304-107323 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG + Chr4:106157-106176 MsG0480018090.01.T01:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG - Chr4:107300-107319 None:intergenic 40.0%
!! GGCATTGTTTCTGATCAACA+TGG + Chr4:106049-106068 MsG0480018090.01.T01:CDS 40.0%
!! GTTGGTCTTACTTAGGTCAT+GGG - Chr4:112237-112256 None:intergenic 40.0%
!! TAGAGAGAGAAAGCACCAAA+TGG + Chr4:110141-110160 MsG0480018090.01.T01:intron 40.0%
!! TTCTGAAATCCAACCAATGC+CGG - Chr4:105900-105919 None:intergenic 40.0%
!! TTGGTCTTACTTAGGTCATG+GGG - Chr4:112236-112255 None:intergenic 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG + Chr4:106265-106284 MsG0480018090.01.T01:CDS 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG - Chr4:109286-109305 None:intergenic 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG + Chr4:106980-106999 MsG0480018090.01.T01:intron 40.0%
!!! GTGCGTTGCATTTTTTCAGA+TGG - Chr4:110676-110695 None:intergenic 40.0%
!!! TTTGTTTTCCGGAAGCACTT+GGG - Chr4:113062-113081 None:intergenic 40.0%
!!! TTTTGTTTTCCGGAAGCACT+TGG - Chr4:113063-113082 None:intergenic 40.0%
AAAGGAGAGAATAGGAGGAG+AGG - Chr4:110035-110054 None:intergenic 45.0%
ACCAAATGGAGTTGGCTACA+TGG - Chr4:106626-106645 None:intergenic 45.0%
ACCATCCAGGTACCTCTATT+AGG - Chr4:106241-106260 None:intergenic 45.0%
ACTAAACCCACTGCTACCAA+TGG - Chr4:109518-109537 None:intergenic 45.0%
ACTCAGAGGTCAGCAAAACA+AGG - Chr4:108332-108351 None:intergenic 45.0%
AGTCCCAGGGTAAGTTACAA+AGG + Chr4:108396-108415 MsG0480018090.01.T01:CDS 45.0%
ATACTCGTTCTCGTTTACGC+CGG + Chr4:105878-105897 MsG0480018090.01.T01:CDS 45.0%
ATGACAGGGGAAGAAGTTGA+AGG + Chr4:105788-105807 MsG0480018090.01.T01:CDS 45.0%
CAGATTGTGATGCCAAGACT+GGG + Chr4:107922-107941 MsG0480018090.01.T01:intron 45.0%
CAGGATTCAGGTCTAAGTGT+AGG + Chr4:107448-107467 MsG0480018090.01.T01:intron 45.0%
CCTTGTCGACAATATGTTGG+GGG - Chr4:112484-112503 None:intergenic 45.0%
CGTGTATATTTATGCCCCAG+AGG + Chr4:108703-108722 MsG0480018090.01.T01:intron 45.0%
CTACACTTAGACCTGAATCC+TGG - Chr4:107450-107469 None:intergenic 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG + Chr4:107035-107054 MsG0480018090.01.T01:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG - Chr4:107975-107994 None:intergenic 45.0%
GCACCATCACCCGATATTTA+AGG + Chr4:112407-112426 MsG0480018090.01.T01:intron 45.0%
GGAGAAGGAGAGAGAATAAG+AGG + Chr4:110162-110181 MsG0480018090.01.T01:intron 45.0%
GGGGCTTGTAGTTCAACAAT+AGG - Chr4:112217-112236 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG + Chr4:107457-107476 MsG0480018090.01.T01:intron 45.0%
GTAGTTCAACAATAGGCCCA+TGG - Chr4:112210-112229 None:intergenic 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG - Chr4:107295-107314 None:intergenic 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG + Chr4:107047-107066 MsG0480018090.01.T01:intron 45.0%
TCAGAAATAAGGACACCGGA+AGG - Chr4:108104-108123 None:intergenic 45.0%
TCCATGTAGCCAACTCCATT+TGG + Chr4:106622-106641 MsG0480018090.01.T01:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG - Chr4:106173-106192 None:intergenic 45.0%
TCTGCCTGAAGACCTAACAA+CGG + Chr4:108634-108653 MsG0480018090.01.T01:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG + Chr4:107040-107059 MsG0480018090.01.T01:intron 45.0%
TCTTGGCATCACAATCTGCA+AGG - Chr4:107920-107939 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG + Chr4:108148-108167 MsG0480018090.01.T01:intron 45.0%
TGGGTAGAATTTGGTCGGAA+TGG + Chr4:110309-110328 MsG0480018090.01.T01:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG + Chr4:107131-107150 MsG0480018090.01.T01:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG + Chr4:107046-107065 MsG0480018090.01.T01:intron 45.0%
TTATGTCACCCAAGTGCTTC+CGG + Chr4:113051-113070 MsG0480018090.01.T01:intron 45.0%
TTCCATGCAGATTGAACTGC+AGG - Chr4:105956-105975 None:intergenic 45.0%
TTCCTCGAGTAAACACCCAT+GGG + Chr4:112191-112210 MsG0480018090.01.T01:intron 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG + Chr4:107048-107067 MsG0480018090.01.T01:intron 45.0%
TTTGTTCCCGCTCCTAATAG+AGG + Chr4:106226-106245 MsG0480018090.01.T01:CDS 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG + Chr4:106250-106269 MsG0480018090.01.T01:CDS 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG + Chr4:106503-106522 MsG0480018090.01.T01:intron 45.0%
! ATTTTGTGCACAGAGCTACC+TGG + Chr4:108510-108529 MsG0480018090.01.T01:intron 45.0%
! CATAGGTATCTTGGTGACTC+TGG - Chr4:108013-108032 None:intergenic 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG + Chr4:107140-107159 MsG0480018090.01.T01:intron 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG + Chr4:109521-109540 MsG0480018090.01.T01:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG + Chr4:109508-109527 MsG0480018090.01.T01:intron 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG + Chr4:109610-109629 MsG0480018090.01.T01:intron 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG + Chr4:107030-107049 MsG0480018090.01.T01:intron 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG + Chr4:106163-106182 MsG0480018090.01.T01:CDS 45.0%
! TTTTGTGCACAGAGCTACCT+GGG + Chr4:108511-108530 MsG0480018090.01.T01:intron 45.0%
!! GAGAAAGCACCAAATGGAGA+AGG + Chr4:110147-110166 MsG0480018090.01.T01:intron 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG - Chr4:107301-107320 None:intergenic 45.0%
!! TCCCGCTCATTTGCTGTATT+AGG + Chr4:110624-110643 MsG0480018090.01.T01:intron 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG + Chr4:106169-106188 MsG0480018090.01.T01:CDS 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG + Chr4:106237-106256 MsG0480018090.01.T01:CDS 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG + Chr4:106168-106187 MsG0480018090.01.T01:CDS 45.0%
!! AAATATTATAAAAGAAAATT+CGG - Chr4:111646-111665 None:intergenic 5.0%
!! ATATATATATAATTGAAATA+TGG + Chr4:106429-106448 MsG0480018090.01.T01:intron 5.0%
!! TTAAGTTAAATAAATAAAAA+GGG + Chr4:112272-112291 MsG0480018090.01.T01:intron 5.0%
!!! TTTTTTTTTTTAATATATAG+GGG + Chr4:112688-112707 MsG0480018090.01.T01:intron 5.0%
ACCGGAAAACACAACCATCC+AGG - Chr4:106254-106273 None:intergenic 50.0%
AGAAACCACGAGGACAAGAC+AGG - Chr4:106202-106221 None:intergenic 50.0%
AGCTCAGTGGGTAGAATTGG+TGG + Chr4:109482-109501 MsG0480018090.01.T01:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG - Chr4:107290-107309 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG - Chr4:109630-109649 None:intergenic 50.0%
ATTGCAGACAGAGAAGTCCC+AGG + Chr4:108382-108401 MsG0480018090.01.T01:CDS 50.0%
CAGGTACCTCTATTAGGAGC+GGG - Chr4:106235-106254 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG - Chr4:106679-106698 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG - Chr4:106236-106255 None:intergenic 50.0%
CCCCCAACATATTGTCGACA+AGG + Chr4:112481-112500 MsG0480018090.01.T01:intron 50.0%
CTCATGAAGTGTACACCCTC+CGG - Chr4:111074-111093 None:intergenic 50.0%
CTCCCAAACCAAGACCAACA+AGG - Chr4:106174-106193 None:intergenic 50.0%
CTGCCTGAAGACCTAACAAC+GGG + Chr4:108635-108654 MsG0480018090.01.T01:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG + Chr4:107041-107060 MsG0480018090.01.T01:intron 50.0%
CTTCCTCGAGTAAACACCCA+TGG + Chr4:112190-112209 MsG0480018090.01.T01:intron 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG - Chr4:107291-107310 None:intergenic 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG + Chr4:109479-109498 MsG0480018090.01.T01:CDS 50.0%
GCAGATTGTGATGCCAAGAC+TGG + Chr4:107921-107940 MsG0480018090.01.T01:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG + Chr4:108546-108565 MsG0480018090.01.T01:intron 50.0%
GCTACTGTTACTGCTACTGC+CGG + Chr4:106097-106116 MsG0480018090.01.T01:CDS 50.0%
GGCTACACATAGGAAGGAAG+TGG - Chr4:107637-107656 None:intergenic 50.0%
GTCCTGCAGTTCAATCTGCA+TGG + Chr4:105951-105970 MsG0480018090.01.T01:CDS 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG + Chr4:107039-107058 MsG0480018090.01.T01:intron 50.0%
GTGTAGATCCCCATCTTGTG+TGG + Chr4:107070-107089 MsG0480018090.01.T01:intron 50.0%
TAGATCCCCATCTTGTGTGG+AGG + Chr4:107073-107092 MsG0480018090.01.T01:intron 50.0%
TCTTGGCCCATGGTCTCAAA+CGG - Chr4:109620-109639 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG - Chr4:107292-107311 None:intergenic 50.0%
TTGCAGACAGAGAAGTCCCA+GGG + Chr4:108383-108402 MsG0480018090.01.T01:CDS 50.0%
TTGTGATGCCAAGACTGGGT+TGG + Chr4:107926-107945 MsG0480018090.01.T01:intron 50.0%
! GTGCAAGAGTATACACCCTC+CGG + Chr4:110934-110953 MsG0480018090.01.T01:intron 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG + Chr4:106172-106191 MsG0480018090.01.T01:CDS 50.0%
!!! TTTTTGAGTCGTGCTCCGCT+CGG - Chr4:111796-111815 None:intergenic 50.0%
AGCCATCTCCAACCCAGTCT+TGG - Chr4:107937-107956 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG - Chr4:108641-108660 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG + Chr4:109446-109465 MsG0480018090.01.T01:CDS 55.0%
GTTCTCGTTTACGCCGGCAT+TGG + Chr4:105884-105903 MsG0480018090.01.T01:CDS 55.0%
TCAGTCAGAACCACCGGTGT+CGG + Chr4:109452-109471 MsG0480018090.01.T01:CDS 55.0%
TCGAGGAAGAGCAGCTCACT+TGG - Chr4:112179-112198 None:intergenic 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG + Chr4:107932-107951 MsG0480018090.01.T01:intron 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG - Chr4:109450-109469 None:intergenic 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG + Chr4:106233-106252 MsG0480018090.01.T01:CDS 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG - Chr4:109449-109468 None:intergenic 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG + Chr4:106175-106194 MsG0480018090.01.T01:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG + Chr4:105888-105907 MsG0480018090.01.T01:CDS 55.0%
!! TGGGTGAAAGGAGCACTCGA+AGG - Chr4:108246-108265 None:intergenic 55.0%
!! TTTTGAGTCGTGCTCCGCTC+GGG - Chr4:111795-111814 None:intergenic 55.0%
CCACTGCTACGGCTGACAAG+AGG - Chr4:108539-108558 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG + Chr4:108536-108555 MsG0480018090.01.T01:intron 60.0%
GGCCCATGGGTGTTTACTCG+AGG - Chr4:112196-112215 None:intergenic 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG + Chr4:109470-109489 MsG0480018090.01.T01:CDS 60.0%
TGAGCTTGCGACTCCGACAC+CGG - Chr4:109468-109487 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG + Chr4:109469-109488 MsG0480018090.01.T01:CDS 60.0%
ACGGCTGACAAGAGGAGCCC+AGG - Chr4:108531-108550 None:intergenic 65.0%
GCGGTCCTGTCTTGTCCTCG+TGG + Chr4:106194-106213 MsG0480018090.01.T01:CDS 65.0%
GCTTGCGACTCCGACACCGG+TGG - Chr4:109465-109484 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 105788 113299 105788 ID=MsG0480018090.01;Name=MsG0480018090.01
Chr4 mRNA 105788 113299 105788 ID=MsG0480018090.01.T01;Parent=MsG0480018090.01;Name=MsG0480018090.01.T01;_AED=0.47;_eAED=0.51;_QI=0|0.4|0.16|1|0.8|0.83|6|0|297
Chr4 exon 105788 106336 105788 ID=MsG0480018090.01.T01:exon:409;Parent=MsG0480018090.01.T01
Chr4 exon 108231 108493 108231 ID=MsG0480018090.01.T01:exon:410;Parent=MsG0480018090.01.T01
Chr4 exon 109440 109520 109440 ID=MsG0480018090.01.T01:exon:411;Parent=MsG0480018090.01.T01
Chr4 exon 113299 113299 113299 ID=MsG0480018090.01.T01:exon:412;Parent=MsG0480018090.01.T01
Chr4 CDS 105788 106336 105788 ID=MsG0480018090.01.T01:cds;Parent=MsG0480018090.01.T01
Chr4 CDS 108231 108493 108231 ID=MsG0480018090.01.T01:cds;Parent=MsG0480018090.01.T01
Chr4 CDS 109440 109520 109440 ID=MsG0480018090.01.T01:cds;Parent=MsG0480018090.01.T01
Chr4 CDS 113299 113299 113299 ID=MsG0480018090.01.T01:cds;Parent=MsG0480018090.01.T01
Gene Sequence

>MsG0480018090.01.T01

ATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTCTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGGTAAATTCATTATCTTTGTCTGTGGTATCTCATCCTTCGAGTGCTCCTTTCACCCAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGCAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGGTATGTTTACTACTGATTTCAGAATTGTTTTACTATACCATTCCCGGGAAATATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGA
Protein sequence

>MsG0480018090.01.T01

MTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWVNSLSLSVVSHPSSAPFTQLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSNVSQINCRQRSPRVSYKGVFIASFAGMFTTDFRIVLLYHSREIYIPHQSEPPVSESQAQWVELVECYVH*