AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023648.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023648.01.T01 MTR_8g098325 93.657 536 6 1 1 508 1 536 0.0 1023
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023648.01.T01 AT1G63660 76.181 529 98 1 8 508 6 534 0.0 842
MsG0480023648.01.T01 AT1G63660 72.494 429 90 1 8 408 6 434 0.0 650

Find 179 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATAAAGGTACGTCAATT+AGG 0.224273 4:-88083478 MsG0480023648.01.T01:intron
TGCGCTGCTTCAAGCTTTCT+AGG 0.231404 4:+88085116 None:intergenic
TGGTCTTGCAGTTAGAGTTC+TGG 0.234935 4:-88083401 MsG0480023648.01.T01:CDS
CTTGAAGCTTTGTAAGAAAT+TGG 0.253809 4:+88083886 None:intergenic
TCCCCGACGGCTTTCTTCAA+TGG 0.289631 4:-88084870 MsG0480023648.01.T01:CDS
TTGAAGCGGGAATTTATAAT+AGG 0.292555 4:-88082265 MsG0480023648.01.T01:three_prime_UTR
TGTGATGGAAACCTTTAAAA+AGG 0.294638 4:-88083946 MsG0480023648.01.T01:CDS
CATGTCATTTGTGCCTTATC+TGG 0.306235 4:-88084179 MsG0480023648.01.T01:CDS
GAAGCTGTTACTCTTCCTTC+TGG 0.306647 4:-88084652 MsG0480023648.01.T01:CDS
CCCAATGGCTTTATGAACTA+TGG 0.316965 4:+88084130 None:intergenic
CTGGCCTTTATGACGTAATA+TGG 0.320042 4:-88083215 MsG0480023648.01.T01:CDS
TTGGACATAATCAGATTGTT+TGG 0.324863 4:-88084690 MsG0480023648.01.T01:CDS
TTGCTGTGTCTATAGGTATA+AGG 0.328120 4:-88083979 MsG0480023648.01.T01:intron
CCCCGACGGCTTTCTTCAAT+GGG 0.340121 4:-88084869 MsG0480023648.01.T01:CDS
CCCCTCTTGCCGGGGATTGG+AGG 0.344028 4:-88082295 MsG0480023648.01.T01:three_prime_UTR
CAGCTTCTTGTCAGCCGTCT+TGG 0.346806 4:-88084802 MsG0480023648.01.T01:CDS
TTTCCCCTCTTGCCGGGGAT+TGG 0.353182 4:-88082298 MsG0480023648.01.T01:three_prime_UTR
ATACTGAAGACCATAAAATT+TGG 0.353194 4:+88084570 None:intergenic
GAAGTAAAGAGGAAAATTAT+TGG 0.356749 4:-88083849 MsG0480023648.01.T01:intron
GGTCTTGCAGTTAGAGTTCT+GGG 0.357052 4:-88083400 MsG0480023648.01.T01:CDS
TCGGGGAAGGAAGGGGAATC+AGG 0.360507 4:+88084886 None:intergenic
TCTAGGGTTTATGTTGTTGT+TGG 0.361635 4:+88085133 None:intergenic
GTATGGCCGGATGGAAATTA+AGG 0.366637 4:-88084749 MsG0480023648.01.T01:CDS
GTCGGTAACACGCAGGAGTA+TGG 0.376795 4:-88084766 MsG0480023648.01.T01:CDS
AGTTTCAATTTCATATCCTT+TGG 0.386250 4:+88083646 None:intergenic
TCCAATGCTGTACCTGTTCT+CGG 0.401299 4:-88084841 MsG0480023648.01.T01:CDS
GAGAGAAAACGGAGAGGCTT+CGG 0.409425 4:+88085001 None:intergenic
GGCTCTTGATGGTATGGGAA+TGG 0.412411 4:+88083689 None:intergenic
GACATTATGATGGCTCTTGA+TGG 0.415267 4:+88083678 None:intergenic
GCTCTTGATGGTATGGGAAT+GGG 0.417699 4:+88083690 None:intergenic
TTCTTACCAGTAAGATCTGT+TGG 0.422935 4:-88083177 MsG0480023648.01.T01:CDS
CAATTTCTTACAAAGCTTCA+AGG 0.423011 4:-88083885 MsG0480023648.01.T01:CDS
TGAACTCCAACAGATCTTAC+TGG 0.423500 4:+88083171 None:intergenic
ATTGTGTTGTATATGCGATA+AGG 0.426133 4:-88082351 MsG0480023648.01.T01:three_prime_UTR
AGTGATGAGGTGAGTGTATT+GGG 0.426473 4:+88085032 None:intergenic
GTAAGATCTGTTGGAGTTCA+AGG 0.429733 4:-88083168 MsG0480023648.01.T01:CDS
GCACAAATGACATGCTCATC+AGG 0.431096 4:+88084188 None:intergenic
GGGCATGATTCAATCACATC+AGG 0.436861 4:+88083733 None:intergenic
CCATAGTTCATAAAGCCATT+GGG 0.440199 4:-88084130 MsG0480023648.01.T01:CDS
AGCTTGAAGCAGCGCAGCCA+TGG 0.444748 4:-88085109 MsG0480023648.01.T01:exon
GTATAAAGGTACGTCAATTA+GGG 0.444870 4:-88083477 MsG0480023648.01.T01:intron
GTGGAAGATGGAGGATGTGT+TGG 0.444993 4:-88084246 MsG0480023648.01.T01:CDS
CGTCATCCCTTCCCTGGGCC+TGG 0.447113 4:-88083421 MsG0480023648.01.T01:CDS
CTTGCCGGGGATTGGAGGGA+AGG 0.448853 4:-88082290 MsG0480023648.01.T01:three_prime_UTR
GATGTTTGTGGGATTTCAGC+AGG 0.450199 4:-88084269 MsG0480023648.01.T01:CDS
TGGAGGGAAGGGATTGAAGC+GGG 0.453413 4:-88082278 MsG0480023648.01.T01:three_prime_UTR
GACTCATACGCCGGAGGGAA+TGG 0.454303 4:-88084315 MsG0480023648.01.T01:CDS
CCCTCTTGCCGGGGATTGGA+GGG 0.456699 4:-88082294 MsG0480023648.01.T01:three_prime_UTR
CTAAAACGTCATCCCTTCCC+TGG 0.460144 4:-88083427 MsG0480023648.01.T01:CDS
TCCTTCTGGTTTCAATGTCG+TGG 0.462035 4:-88084638 MsG0480023648.01.T01:CDS
TATGATGGCTCTTGATGGTA+TGG 0.468360 4:+88083683 None:intergenic
CGAAGTCGAGGATGAGAACT+AGG 0.468903 4:+88085058 None:intergenic
GCGCTGCTTCAAGCTTTCTA+GGG 0.471076 4:+88085117 None:intergenic
TCCTTGAAAAGTAGTTTAAG+TGG 0.473279 4:+88083616 None:intergenic
TTGTTGACAATGGCTTGCTC+AGG 0.477269 4:-88084088 MsG0480023648.01.T01:intron
CTTGCCATATTACGTCATAA+AGG 0.478901 4:+88083211 None:intergenic
TTATGTCCAACTTTCTCAGC+AGG 0.480136 4:+88084703 None:intergenic
ACCATAGTTCATAAAGCCAT+TGG 0.482152 4:-88084131 MsG0480023648.01.T01:CDS
CCCTCCAATCCCCGGCAAGA+GGG 0.482766 4:+88082294 None:intergenic
GCAGCATCAACACACTCAAC+TGG 0.486387 4:+88083912 None:intergenic
TTCAGTGTTTCCATTCCCTC+CGG 0.487027 4:+88084305 None:intergenic
TTGGAGGGAAGGGATTGAAG+CGG 0.492862 4:-88082279 MsG0480023648.01.T01:three_prime_UTR
CTTCTTGTCAGCCGTCTTGG+CGG 0.495634 4:-88084799 MsG0480023648.01.T01:CDS
AAACGGAGAGGCTTCGGATA+CGG 0.496736 4:+88085007 None:intergenic
CCTTCCCTCGTCATTCTCTC+CGG 0.507172 4:-88084931 MsG0480023648.01.T01:CDS
GAAAGCCGTCGGGGAAGGAA+GGG 0.507848 4:+88084878 None:intergenic
GATTTCAGCAGGGTGGAAGA+TGG 0.508686 4:-88084258 MsG0480023648.01.T01:CDS
GTTGAGGCAGAGAGAGAAAA+CGG 0.509193 4:+88084990 None:intergenic
TGTCTATAGGTATAAGGAGC+AGG 0.509880 4:-88083973 MsG0480023648.01.T01:intron
GCCCATTGAAGAAAGCCGTC+GGG 0.510269 4:+88084868 None:intergenic
GGAATCAACACCACCAGATA+AGG 0.510348 4:+88084166 None:intergenic
GAAGATGGAGGATGTGTTGG+AGG 0.511074 4:-88084243 MsG0480023648.01.T01:CDS
CCGTAGCAGATACCGAGAAC+AGG 0.512049 4:+88084829 None:intergenic
GAAGACCACCGACATTATGA+TGG 0.513566 4:+88083668 None:intergenic
TCATGCCCACCACCTGGAAG+TGG 0.514563 4:-88083718 MsG0480023648.01.T01:CDS
CATTCCATCTTGACTTGTCA+CGG 0.515702 4:+88083107 None:intergenic
AAAGTGATTAATAATACAGT+GGG 0.519092 4:-88084212 MsG0480023648.01.T01:CDS
TTTCGACCTTAATTTCCATC+CGG 0.519841 4:+88084743 None:intergenic
AAAGCCGTCGGGGAAGGAAG+GGG 0.520124 4:+88084879 None:intergenic
TATTCCCACTCAATTGTTGA+AGG 0.524026 4:+88082415 None:intergenic
TTGCCGGGGATTGGAGGGAA+GGG 0.525065 4:-88082289 MsG0480023648.01.T01:three_prime_UTR
TGCCTTGGATGTTCTCCGAC+AGG 0.525589 4:-88083359 MsG0480023648.01.T01:intron
TTGATTCAATTGATTCGAGA+GGG 0.526978 4:+88082176 None:intergenic
ATTCAGTCAATCAAAGATGC+TGG 0.527113 4:-88083234 MsG0480023648.01.T01:CDS
ATCAGGAGTGTGAACAGAGT+GGG 0.528161 4:+88084903 None:intergenic
GAGTGATGAGGTGAGTGTAT+TGG 0.531449 4:+88085031 None:intergenic
TCCCTCCAATCCCCGGCAAG+AGG 0.531490 4:+88082293 None:intergenic
AGAAAGCCGTCGGGGAAGGA+AGG 0.532276 4:+88084877 None:intergenic
TTGTATATGCGATAAGGTAC+TGG 0.536927 4:-88082345 MsG0480023648.01.T01:three_prime_UTR
AAGTTACCTTTCGATCATTG+AGG 0.537091 4:+88082141 None:intergenic
TAAGGAGCAGGAACGTGTGA+TGG 0.541741 4:-88083961 MsG0480023648.01.T01:CDS
TGGGAAGGTGACTCATACGC+CGG 0.541745 4:-88084324 MsG0480023648.01.T01:intron
TGCAAGACCAGGCCCAGGGA+AGG 0.542703 4:+88083414 None:intergenic
TTCATAAAGCCATTGGGGAT+AGG 0.544699 4:-88084124 MsG0480023648.01.T01:CDS
CGGCTCTGAGTGCAACAACA+TGG 0.545340 4:+88083127 None:intergenic
TAAAACGTCATCCCTTCCCT+GGG 0.546430 4:-88083426 MsG0480023648.01.T01:CDS
GTGAACAGAGTGGGGACCAC+CGG 0.548484 4:+88084912 None:intergenic
CGTGACTGAAGGAAATGCCT+TGG 0.548575 4:-88083374 MsG0480023648.01.T01:CDS
CCGGAGAGAATGACGAGGGA+AGG 0.550965 4:+88084931 None:intergenic
CGGAGAGAATGACGAGGGAA+GGG 0.551441 4:+88084932 None:intergenic
AGAACTAACTCCACTCAGTA+GGG 0.551919 4:+88085180 None:intergenic
GCAAGACCAGGCCCAGGGAA+GGG 0.552040 4:+88083415 None:intergenic
ACGTCAATTAGGGAGGATCA+TGG 0.556420 4:-88083467 MsG0480023648.01.T01:CDS
TGACAGATCCTGAAGTAAAG+AGG 0.559123 4:-88083860 MsG0480023648.01.T01:CDS
TTGAAGAAAGCCGTCGGGGA+AGG 0.559604 4:+88084873 None:intergenic
GGAAGGGTTGAGTTCAGTGA+TGG 0.559716 4:+88084948 None:intergenic
ACCGAGAACAGGTACAGCAT+TGG 0.560482 4:+88084840 None:intergenic
CTAGTTCTCATCCTCGACTT+CGG 0.560880 4:-88085057 MsG0480023648.01.T01:CDS
TAGAACTAACTCCACTCAGT+AGG 0.561665 4:+88085179 None:intergenic
TGCCCATTGAAGAAAGCCGT+CGG 0.563390 4:+88084867 None:intergenic
ATTGAATCATGCCCACCACC+TGG 0.563547 4:-88083724 MsG0480023648.01.T01:CDS
GTTTCACGCAAAATCTGTAA+TGG 0.563756 4:-88082484 MsG0480023648.01.T01:CDS
CTAACTGCAAGACCAGGCCC+AGG 0.566444 4:+88083409 None:intergenic
TCCCACTCAATTGTTGAAGG+AGG 0.570083 4:+88082418 None:intergenic
GGGGTTCTCGATGGCAGCGA+CGG 0.572007 4:+88084597 None:intergenic
CCTGTTCTCGGTATCTGCTA+CGG 0.573573 4:-88084829 MsG0480023648.01.T01:CDS
GCCTCCTTCAACAATTGAGT+GGG 0.574342 4:-88082419 MsG0480023648.01.T01:CDS
CCTCCAATCCCCGGCAAGAG+GGG 0.575451 4:+88082295 None:intergenic
AGACCATAAAATTTGGCAGA+GGG 0.578757 4:+88084577 None:intergenic
CGCGGACTTCACCGCCAAGA+CGG 0.581254 4:+88084788 None:intergenic
AAGATGGAATGACAGCAGAC+TGG 0.581634 4:-88083095 MsG0480023648.01.T01:intron
GGCTCTGAGTGCAACAACAT+GGG 0.583042 4:+88083128 None:intergenic
TCCCTCGTCATTCTCTCCGG+TGG 0.585095 4:-88084928 MsG0480023648.01.T01:CDS
GAAGAGAAGAAGTGCCGTTG+AGG 0.585102 4:+88084974 None:intergenic
GATTCCCCTTCCTTCCCCGA+CGG 0.587414 4:-88084883 MsG0480023648.01.T01:CDS
AATCCCTTCCCTCCAATCCC+CGG 0.589462 4:+88082286 None:intergenic
AGAACTCTAACTGCAAGACC+AGG 0.590896 4:+88083403 None:intergenic
CACGCAGGAGTATGGCCGGA+TGG 0.594351 4:-88084758 MsG0480023648.01.T01:CDS
GTCATTTGTGCCTTATCTGG+TGG 0.595067 4:-88084176 MsG0480023648.01.T01:CDS
ATGTTTGTGGGATTTCAGCA+GGG 0.596794 4:-88084268 MsG0480023648.01.T01:CDS
CATGCCCACCACCTGGAAGT+GGG 0.599206 4:-88083717 MsG0480023648.01.T01:CDS
TACTGGTAAGAAAACTGCAA+AGG 0.601593 4:+88083188 None:intergenic
ATCAAGAGCCATCATAATGT+CGG 0.606367 4:-88083676 MsG0480023648.01.T01:CDS
TTTGGCAGAGGGGTTCTCGA+TGG 0.608956 4:+88084588 None:intergenic
TTTGATTCAATTGATTCGAG+AGG 0.609007 4:+88082175 None:intergenic
AGCCTCCTTCAACAATTGAG+TGG 0.609163 4:-88082420 MsG0480023648.01.T01:CDS
AACTATGGTAGCAGCAACAG+TGG 0.609789 4:+88084145 None:intergenic
GACCATAAAATTTGGCAGAG+GGG 0.610716 4:+88084578 None:intergenic
GTAACACGCAGGAGTATGGC+CGG 0.613780 4:-88084762 MsG0480023648.01.T01:CDS
AGAGCCGTGACAAGTCAAGA+TGG 0.616452 4:-88083111 MsG0480023648.01.T01:CDS
CATAGTTCATAAAGCCATTG+GGG 0.618500 4:-88084129 MsG0480023648.01.T01:CDS
GTTCTGGGTGACGTGACTGA+AGG 0.621656 4:-88083385 MsG0480023648.01.T01:CDS
TAATGTCGGTGGTCTTCCAA+AGG 0.622152 4:-88083662 MsG0480023648.01.T01:CDS
AAGGTGACTCATACGCCGGA+GGG 0.623263 4:-88084320 MsG0480023648.01.T01:CDS
CAGATTGTTTGGATGAGTCA+TGG 0.625708 4:-88084679 MsG0480023648.01.T01:CDS
AATCAGGAGTGTGAACAGAG+TGG 0.627946 4:+88084902 None:intergenic
TACCTGTCGGAGAACATCCA+AGG 0.628154 4:+88083357 None:intergenic
TGTATTGGGAACCGAAGTCG+AGG 0.628403 4:+88085046 None:intergenic
CAAAGTGATTAATAATACAG+TGG 0.630032 4:-88084213 MsG0480023648.01.T01:CDS
TTCGGATACGGCGAGTGATG+AGG 0.631967 4:+88085019 None:intergenic
TGATTCAATTGATTCGAGAG+GGG 0.632946 4:+88082177 None:intergenic
TTCAGCAGGGTGGAAGATGG+AGG 0.635225 4:-88084255 MsG0480023648.01.T01:CDS
TTGCAATAACTAGAATTGAG+AGG 0.635788 4:-88082223 MsG0480023648.01.T01:three_prime_UTR
ACAATGAAGCCTATCCCCAA+TGG 0.636198 4:+88084115 None:intergenic
ATGATGGCTCTTGATGGTAT+GGG 0.637099 4:+88083684 None:intergenic
GTCGTGGCACGAAGTCAACA+AGG 0.638723 4:-88084622 MsG0480023648.01.T01:CDS
AGGATCATGGATGTCCCTGA+GGG 0.638998 4:-88083454 MsG0480023648.01.T01:CDS
GCCACGACATTGAAACCAGA+AGG 0.640831 4:+88084637 None:intergenic
TCAGGAGTGTGAACAGAGTG+GGG 0.642749 4:+88084904 None:intergenic
CCCATTGAAGAAAGCCGTCG+GGG 0.642898 4:+88084869 None:intergenic
AAGACCATAAAATTTGGCAG+AGG 0.647998 4:+88084576 None:intergenic
GCACAACACGATTCACACCA+CGG 0.648587 4:+88082458 None:intergenic
GGCATGATTCAATCACATCA+GGG 0.655836 4:+88083734 None:intergenic
TAAAGGTACGTCAATTAGGG+AGG 0.658939 4:-88083474 MsG0480023648.01.T01:intron
AAGAGCCATCATAATGTCGG+TGG 0.662337 4:-88083673 MsG0480023648.01.T01:CDS
GAAGGTGACTCATACGCCGG+AGG 0.662543 4:-88084321 MsG0480023648.01.T01:intron
CTTGGCGGTGAAGTCCGCGT+CGG 0.667089 4:-88084784 MsG0480023648.01.T01:CDS
GAGGATCATGGATGTCCCTG+AGG 0.671870 4:-88083455 MsG0480023648.01.T01:CDS
TAACTGCAAGACCAGGCCCA+GGG 0.675071 4:+88083410 None:intergenic
AGTCCGCGTCGGTAACACGC+AGG 0.678914 4:-88084773 MsG0480023648.01.T01:CDS
TTTGTGGGATTTCAGCAGGG+TGG 0.679722 4:-88084265 MsG0480023648.01.T01:CDS
ACTCCTGCGTGTTACCGACG+CGG 0.693388 4:+88084770 None:intergenic
ACCACCGGAGAGAATGACGA+GGG 0.697226 4:+88084927 None:intergenic
TTTGCATAAACCCTACTGAG+TGG 0.697872 4:-88085190 MsG0480023648.01.T01:five_prime_UTR
AAAATCTGTAATGGTGTCCG+TGG 0.698688 4:-88082475 MsG0480023648.01.T01:CDS
GGCAGAGAGAGAAAACGGAG+AGG 0.709889 4:+88084995 None:intergenic
GACCACCGGAGAGAATGACG+AGG 0.712882 4:+88084926 None:intergenic
TGGTCTTCAGTATCACCCTG+AGG 0.715570 4:-88084560 MsG0480023648.01.T01:intron
AAGTGATTAATAATACAGTG+GGG 0.782696 4:-88084211 MsG0480023648.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTATTTCTTTTTTAAA+TGG - Chr4:88084366-88084385 MsG0480023648.01.T01:intron 10.0%
!! AAATTGAATCAAAATATTGA+AGG + Chr4:88084074-88084093 None:intergenic 15.0%
!! TACACTATCAATAAATTATA+TGG + Chr4:88082954-88082973 None:intergenic 15.0%
!! TTTATTCATTGTAAAGATAT+TGG - Chr4:88083306-88083325 MsG0480023648.01.T01:intron 15.0%
!!! AACCTTTAAAATTTCAAATA+CGG - Chr4:88084763-88084782 MsG0480023648.01.T01:CDS 15.0%
!!! TGATAGAACAAAATTTATTT+TGG - Chr4:88084435-88084454 MsG0480023648.01.T01:intron 15.0%
!! AAAGTGATTAATAATACAGT+GGG - Chr4:88083143-88083162 MsG0480023648.01.T01:CDS 20.0%
!! CTATCAATAAATTATATGGA+TGG + Chr4:88082950-88082969 None:intergenic 20.0%
!! CTGTTAAAAAGAAAAAACTA+AGG + Chr4:88084548-88084567 None:intergenic 20.0%
!! TAAAGATATTGGATTACAAA+CGG - Chr4:88083317-88083336 MsG0480023648.01.T01:intron 20.0%
!!! AACTTGATAAAATGATAATG+TGG + Chr4:88084625-88084644 None:intergenic 20.0%
!!! ATTGTTATTTGTTCTTGTTT+GGG - Chr4:88083012-88083031 MsG0480023648.01.T01:intron 20.0%
!!! ATTTTCATTTCCTTGTATAA+AGG - Chr4:88083864-88083883 MsG0480023648.01.T01:CDS 20.0%
!!! ATTTTCTATTTGATGTTTGT+GGG - Chr4:88083075-88083094 MsG0480023648.01.T01:intron 20.0%
!!! TAAATGAAGATCCTTTTTAA+AGG + Chr4:88083423-88083442 None:intergenic 20.0%
!!! TAAGGTATATTTTAGCTTTT+AGG + Chr4:88084530-88084549 None:intergenic 20.0%
!!! TGCTAGTTCATTTTAATAAT+TGG - Chr4:88084728-88084747 MsG0480023648.01.T01:CDS 20.0%
! AAGTGATTAATAATACAGTG+GGG - Chr4:88083144-88083163 MsG0480023648.01.T01:CDS 25.0%
! AATCAAAATTAAACACAAGC+AGG + Chr4:88082837-88082856 None:intergenic 25.0%
! AGGTATATTATTATACCTCA+GGG + Chr4:88082813-88082832 None:intergenic 25.0%
! AGTTTCAATTTCATATCCTT+TGG + Chr4:88083712-88083731 None:intergenic 25.0%
! ATACTGAAGACCATAAAATT+TGG + Chr4:88082788-88082807 None:intergenic 25.0%
! CAAAGTGATTAATAATACAG+TGG - Chr4:88083142-88083161 MsG0480023648.01.T01:CDS 25.0%
! GAAGTAAAGAGGAAAATTAT+TGG - Chr4:88083506-88083525 MsG0480023648.01.T01:intron 25.0%
! TAGGTATATTATTATACCTC+AGG + Chr4:88082814-88082833 None:intergenic 25.0%
!! ATAATTTTCCTCTTTACTTC+AGG + Chr4:88083506-88083525 None:intergenic 25.0%
!! CATTTTCTATTTGATGTTTG+TGG - Chr4:88083074-88083093 MsG0480023648.01.T01:intron 25.0%
!!! AGCCGTATTTGAAATTTTAA+AGG + Chr4:88084768-88084787 None:intergenic 25.0%
!!! ATATTTTAGCTTTTAGGACT+GGG + Chr4:88084524-88084543 None:intergenic 25.0%
!!! GAGTTAGTTTTATTTTTCGA+TGG - Chr4:88084969-88084988 MsG0480023648.01.T01:CDS 25.0%
!!! GATTGTTATTTGTTCTTGTT+TGG - Chr4:88083011-88083030 MsG0480023648.01.T01:intron 25.0%
!!! TATATTTTAGCTTTTAGGAC+TGG + Chr4:88084525-88084544 None:intergenic 25.0%
!!! TCTATCAAATAGTTTGCTAA+AGG + Chr4:88084422-88084441 None:intergenic 25.0%
!!! TTTATTTTTCGATGGTTGTT+GGG - Chr4:88084977-88084996 MsG0480023648.01.T01:CDS 25.0%
!!! TTTTATTTTTCGATGGTTGT+TGG - Chr4:88084976-88084995 MsG0480023648.01.T01:CDS 25.0%
AAAATTAAACACAAGCAGGT+AGG + Chr4:88082833-88082852 None:intergenic 30.0%
AATGAAAATCTCATCAACCT+GGG + Chr4:88084104-88084123 None:intergenic 30.0%
AATGGTACCAAATTACCATT+AGG - Chr4:88084384-88084403 MsG0480023648.01.T01:intron 30.0%
AATTGACGTACCTTTATACA+AGG + Chr4:88083877-88083896 None:intergenic 30.0%
ATCATCTTAATAGCACTTTG+CGG - Chr4:88084792-88084811 MsG0480023648.01.T01:CDS 30.0%
ATTGTGTTGTATATGCGATA+AGG - Chr4:88085004-88085023 MsG0480023648.01.T01:CDS 30.0%
CAATTTCTTACAAAGCTTCA+AGG - Chr4:88083470-88083489 MsG0480023648.01.T01:CDS 30.0%
CTGTATTTGAATTGAATTCC+AGG - Chr4:88084818-88084837 MsG0480023648.01.T01:CDS 30.0%
TCCTTGAAAAGTAGTTTAAG+TGG + Chr4:88083742-88083761 None:intergenic 30.0%
TTAACCTCCTAATGGTAATT+TGG + Chr4:88084394-88084413 None:intergenic 30.0%
TTGAAGCGGGAATTTATAAT+AGG - Chr4:88085090-88085109 MsG0480023648.01.T01:CDS 30.0%
TTGCAATAACTAGAATTGAG+AGG - Chr4:88085132-88085151 MsG0480023648.01.T01:five_prime_UTR 30.0%
TTGGAAATATATCAGCTTCT+GGG - Chr4:88084685-88084704 MsG0480023648.01.T01:CDS 30.0%
TTGGACATAATCAGATTGTT+TGG - Chr4:88082665-88082684 MsG0480023648.01.T01:intron 30.0%
TTTCAACTGAAGTATGCATA+TGG - Chr4:88084288-88084307 MsG0480023648.01.T01:CDS 30.0%
! AGGTCTGATTTTACTTGTTT+TGG + Chr4:88082280-88082299 None:intergenic 30.0%
! CTTGAAGCTTTGTAAGAAAT+TGG + Chr4:88083472-88083491 None:intergenic 30.0%
! GATTCAATTTTTCTTTTCCC+AGG - Chr4:88084084-88084103 MsG0480023648.01.T01:intron 30.0%
! GTATAAAGGTACGTCAATTA+GGG - Chr4:88083878-88083897 MsG0480023648.01.T01:CDS 30.0%
! TGTATAAAGGTACGTCAATT+AGG - Chr4:88083877-88083896 MsG0480023648.01.T01:CDS 30.0%
! TGTGATGGAAACCTTTAAAA+AGG - Chr4:88083409-88083428 MsG0480023648.01.T01:CDS 30.0%
! TTATTTGTTCTTGTTTGGGA+AGG - Chr4:88083016-88083035 MsG0480023648.01.T01:intron 30.0%
! TTTTGCTCAAAAGCTAGAAA+AGG - Chr4:88083556-88083575 MsG0480023648.01.T01:intron 30.0%
!! CATTGTGTTTTTGTTGACAA+TGG - Chr4:88083257-88083276 MsG0480023648.01.T01:intron 30.0%
!! TAAACTACTTTTCAAGGATG+AGG - Chr4:88083744-88083763 MsG0480023648.01.T01:CDS 30.0%
!! TTGATTCAATTGATTCGAGA+GGG + Chr4:88085182-88085201 None:intergenic 30.0%
!! TTTGATTCAATTGATTCGAG+AGG + Chr4:88085183-88085202 None:intergenic 30.0%
AACGACCCTAGTATCTAATT+AGG + Chr4:88084658-88084677 None:intergenic 35.0%
AAGACCATAAAATTTGGCAG+AGG + Chr4:88082782-88082801 None:intergenic 35.0%
AATGAATAAACCGAGACTAG+TGG + Chr4:88083296-88083315 None:intergenic 35.0%
ACCATAGTTCATAAAGCCAT+TGG - Chr4:88083224-88083243 MsG0480023648.01.T01:CDS 35.0%
ACGAGCCTAATTAGATACTA+GGG - Chr4:88084650-88084669 MsG0480023648.01.T01:CDS 35.0%
AGACCATAAAATTTGGCAGA+GGG + Chr4:88082781-88082800 None:intergenic 35.0%
ATCAAGAGCCATCATAATGT+CGG - Chr4:88083679-88083698 MsG0480023648.01.T01:CDS 35.0%
ATTCAGTCAATCAAAGATGC+TGG - Chr4:88084121-88084140 MsG0480023648.01.T01:CDS 35.0%
CAAAAGCTAGAAAAGGAACT+TGG - Chr4:88083563-88083582 MsG0480023648.01.T01:intron 35.0%
CAGAAGCTGATATATTTCCA+AGG + Chr4:88084686-88084705 None:intergenic 35.0%
CATAGTTCATAAAGCCATTG+GGG - Chr4:88083226-88083245 MsG0480023648.01.T01:CDS 35.0%
CCATAGTTCATAAAGCCATT+GGG - Chr4:88083225-88083244 MsG0480023648.01.T01:CDS 35.0%
CTTGCCATATTACGTCATAA+AGG + Chr4:88084147-88084166 None:intergenic 35.0%
CTTGGAAATATATCAGCTTC+TGG - Chr4:88084684-88084703 MsG0480023648.01.T01:CDS 35.0%
GAATGAAAATCTCATCAACC+TGG + Chr4:88084105-88084124 None:intergenic 35.0%
GTTTCACGCAAAATCTGTAA+TGG - Chr4:88084871-88084890 MsG0480023648.01.T01:CDS 35.0%
TACTGGTAAGAAAACTGCAA+AGG + Chr4:88084170-88084189 None:intergenic 35.0%
TATTCCCACTCAATTGTTGA+AGG + Chr4:88084943-88084962 None:intergenic 35.0%
TTCTTACCAGTAAGATCTGT+TGG - Chr4:88084178-88084197 MsG0480023648.01.T01:CDS 35.0%
TTGCTGTGTCTATAGGTATA+AGG - Chr4:88083376-88083395 MsG0480023648.01.T01:CDS 35.0%
TTGTATATGCGATAAGGTAC+TGG - Chr4:88085010-88085029 MsG0480023648.01.T01:CDS 35.0%
TTTCGACCTTAATTTCCATC+CGG + Chr4:88082615-88082634 None:intergenic 35.0%
! ATGATGCTGGATAACTCTTT+TGG - Chr4:88084313-88084332 MsG0480023648.01.T01:CDS 35.0%
! GATTTTGTTGCTGTGTCTAT+AGG - Chr4:88083369-88083388 MsG0480023648.01.T01:CDS 35.0%
! TCTAGGGTTTATGTTGTTGT+TGG + Chr4:88082225-88082244 None:intergenic 35.0%
! TCTCTCACACAAGCTTTTAA+TGG + Chr4:88084480-88084499 None:intergenic 35.0%
! TTTTGCGTGAAACATCATCA+AGG + Chr4:88084864-88084883 None:intergenic 35.0%
!! GCCACTTAAACTACTTTTCA+AGG - Chr4:88083738-88083757 MsG0480023648.01.T01:CDS 35.0%
!! TGATTCAATTGATTCGAGAG+GGG + Chr4:88085181-88085200 None:intergenic 35.0%
!!! TTGTTTTGGATCTATTGCCA+TGG + Chr4:88082266-88082285 None:intergenic 35.0%
AAAATCTGTAATGGTGTCCG+TGG - Chr4:88084880-88084899 MsG0480023648.01.T01:CDS 40.0%
AGAACTAACTCCACTCAGTA+GGG + Chr4:88082178-88082197 None:intergenic 40.0%
AGACCTTCTTACTTGGTTCA+GGG - Chr4:88083590-88083609 MsG0480023648.01.T01:intron 40.0%
AGGCACATTTAACCTCCTAA+TGG + Chr4:88084402-88084421 None:intergenic 40.0%
AGTGATGAGGTGAGTGTATT+GGG + Chr4:88082326-88082345 None:intergenic 40.0%
ATGTTTGTGGGATTTCAGCA+GGG - Chr4:88083087-88083106 MsG0480023648.01.T01:intron 40.0%
CACGAGCCTAATTAGATACT+AGG - Chr4:88084649-88084668 MsG0480023648.01.T01:CDS 40.0%
CAGATTGTTTGGATGAGTCA+TGG - Chr4:88082676-88082695 MsG0480023648.01.T01:intron 40.0%
GACATTATGATGGCTCTTGA+TGG + Chr4:88083680-88083699 None:intergenic 40.0%
GACCATAAAATTTGGCAGAG+GGG + Chr4:88082780-88082799 None:intergenic 40.0%
GGCATGATTCAATCACATCA+GGG + Chr4:88083624-88083643 None:intergenic 40.0%
GGTACCAAATTACCATTAGG+AGG - Chr4:88084387-88084406 MsG0480023648.01.T01:intron 40.0%
GTAAGATCTGTTGGAGTTCA+AGG - Chr4:88084187-88084206 MsG0480023648.01.T01:CDS 40.0%
TAGAACTAACTCCACTCAGT+AGG + Chr4:88082179-88082198 None:intergenic 40.0%
TATGCATATGGCTATGATGC+TGG - Chr4:88084300-88084319 MsG0480023648.01.T01:CDS 40.0%
TGAACTCCAACAGATCTTAC+TGG + Chr4:88084187-88084206 None:intergenic 40.0%
TGACAGATCCTGAAGTAAAG+AGG - Chr4:88083495-88083514 MsG0480023648.01.T01:intron 40.0%
TGTCTATAGGTATAAGGAGC+AGG - Chr4:88083382-88083401 MsG0480023648.01.T01:CDS 40.0%
TTATGTCCAACTTTCTCAGC+AGG + Chr4:88082655-88082674 None:intergenic 40.0%
TTCATAAAGCCATTGGGGAT+AGG - Chr4:88083231-88083250 MsG0480023648.01.T01:CDS 40.0%
TTTGCATAAACCCTACTGAG+TGG - Chr4:88082165-88082184 MsG0480023648.01.T01:three_prime_UTR 40.0%
! AACCCCTCTGCCAAATTTTA+TGG - Chr4:88082775-88082794 MsG0480023648.01.T01:intron 40.0%
! ATGATGGCTCTTGATGGTAT+GGG + Chr4:88083674-88083693 None:intergenic 40.0%
! CATGTCATTTGTGCCTTATC+TGG - Chr4:88083176-88083195 MsG0480023648.01.T01:CDS 40.0%
! CTGGCCTTTATGACGTAATA+TGG - Chr4:88084140-88084159 MsG0480023648.01.T01:CDS 40.0%
! CTTTTTCCTGCTGAGAAAGT+TGG - Chr4:88082646-88082665 MsG0480023648.01.T01:intron 40.0%
! TAAAGGTACGTCAATTAGGG+AGG - Chr4:88083881-88083900 MsG0480023648.01.T01:CDS 40.0%
! TATGATGGCTCTTGATGGTA+TGG + Chr4:88083675-88083694 None:intergenic 40.0%
! TTATTGTTTTCCCCTCTTGC+CGG - Chr4:88085050-88085069 MsG0480023648.01.T01:CDS 40.0%
!! CATTCCATCTTGACTTGTCA+CGG + Chr4:88084251-88084270 None:intergenic 40.0%
!! CCCAATGGCTTTATGAACTA+TGG + Chr4:88083228-88083247 None:intergenic 40.0%
!!! GACGTTTTAGAAATCCCTCA+GGG + Chr4:88083918-88083937 None:intergenic 40.0%
!!! TGACGTTTTAGAAATCCCTC+AGG + Chr4:88083919-88083938 None:intergenic 40.0%
AACTATGGTAGCAGCAACAG+TGG + Chr4:88083213-88083232 None:intergenic 45.0%
AAGAGCCATCATAATGTCGG+TGG - Chr4:88083682-88083701 MsG0480023648.01.T01:CDS 45.0%
AAGATGGAATGACAGCAGAC+TGG - Chr4:88084260-88084279 MsG0480023648.01.T01:CDS 45.0%
ACAATGAAGCCTATCCCCAA+TGG + Chr4:88083243-88083262 None:intergenic 45.0%
ACGTCAATTAGGGAGGATCA+TGG - Chr4:88083888-88083907 MsG0480023648.01.T01:CDS 45.0%
AGAACTCTAACTGCAAGACC+AGG + Chr4:88083955-88083974 None:intergenic 45.0%
AGCCTCCTTCAACAATTGAG+TGG - Chr4:88084935-88084954 MsG0480023648.01.T01:CDS 45.0%
CAAAAGCTCCATGTACCTGT+CGG + Chr4:88084014-88084033 None:intergenic 45.0%
CAGACCTTCTTACTTGGTTC+AGG - Chr4:88083589-88083608 MsG0480023648.01.T01:intron 45.0%
CTTGTGCTCAAAGTAGTACC+TGG + Chr4:88084839-88084858 None:intergenic 45.0%
GAAGACCACCGACATTATGA+TGG + Chr4:88083690-88083709 None:intergenic 45.0%
GAAGCTGTTACTCTTCCTTC+TGG - Chr4:88082703-88082722 MsG0480023648.01.T01:intron 45.0%
GAGTGATGAGGTGAGTGTAT+TGG + Chr4:88082327-88082346 None:intergenic 45.0%
GATGTTTGTGGGATTTCAGC+AGG - Chr4:88083086-88083105 MsG0480023648.01.T01:intron 45.0%
GCACAAATGACATGCTCATC+AGG + Chr4:88083170-88083189 None:intergenic 45.0%
GCCTCCTTCAACAATTGAGT+GGG - Chr4:88084936-88084955 MsG0480023648.01.T01:CDS 45.0%
GGAATCAACACCACCAGATA+AGG + Chr4:88083192-88083211 None:intergenic 45.0%
GGGCATGATTCAATCACATC+AGG + Chr4:88083625-88083644 None:intergenic 45.0%
GGTCTTGCAGTTAGAGTTCT+GGG - Chr4:88083955-88083974 MsG0480023648.01.T01:CDS 45.0%
GTATGGCCGGATGGAAATTA+AGG - Chr4:88082606-88082625 MsG0480023648.01.T01:intron 45.0%
GTCATTTGTGCCTTATCTGG+TGG - Chr4:88083179-88083198 MsG0480023648.01.T01:CDS 45.0%
GTTCCCTGAACCAAGTAAGA+AGG + Chr4:88083596-88083615 None:intergenic 45.0%
GTTGAGGCAGAGAGAGAAAA+CGG + Chr4:88082368-88082387 None:intergenic 45.0%
TAAAACGTCATCCCTTCCCT+GGG - Chr4:88083929-88083948 MsG0480023648.01.T01:CDS 45.0%
TAATGTCGGTGGTCTTCCAA+AGG - Chr4:88083693-88083712 MsG0480023648.01.T01:CDS 45.0%
TCCAATGCTGTACCTGTTCT+CGG - Chr4:88082514-88082533 MsG0480023648.01.T01:CDS 45.0%
TCCCACTCAATTGTTGAAGG+AGG + Chr4:88084940-88084959 None:intergenic 45.0%
TGGAAGCAGACCTTCTTACT+TGG - Chr4:88083583-88083602 MsG0480023648.01.T01:intron 45.0%
TTCAGTGTTTCCATTCCCTC+CGG + Chr4:88083053-88083072 None:intergenic 45.0%
! AATCAGGAGTGTGAACAGAG+TGG + Chr4:88082456-88082475 None:intergenic 45.0%
! ATCAGGAGTGTGAACAGAGT+GGG + Chr4:88082455-88082474 None:intergenic 45.0%
! CTAGTTCTCATCCTCGACTT+CGG - Chr4:88082298-88082317 MsG0480023648.01.T01:three_prime_UTR 45.0%
! GCTCTTGATGGTATGGGAAT+GGG + Chr4:88083668-88083687 None:intergenic 45.0%
! GTTTTCTCTCTCTGCCTCAA+CGG - Chr4:88082367-88082386 MsG0480023648.01.T01:three_prime_UTR 45.0%
! TATTGTTTTCCCCTCTTGCC+GGG - Chr4:88085051-88085070 MsG0480023648.01.T01:CDS 45.0%
! TGGTCTTGCAGTTAGAGTTC+TGG - Chr4:88083954-88083973 MsG0480023648.01.T01:CDS 45.0%
!! TCCTTCTGGTTTCAATGTCG+TGG - Chr4:88082717-88082736 MsG0480023648.01.T01:intron 45.0%
!! TTGTTGACAATGGCTTGCTC+AGG - Chr4:88083267-88083286 MsG0480023648.01.T01:intron 45.0%
AAACGGAGAGGCTTCGGATA+CGG + Chr4:88082351-88082370 None:intergenic 50.0%
ACCGAGAACAGGTACAGCAT+TGG + Chr4:88082518-88082537 None:intergenic 50.0%
ACTAGGGTCGTTATGCTCCT+TGG - Chr4:88084666-88084685 MsG0480023648.01.T01:CDS 50.0%
AGAGCCGTGACAAGTCAAGA+TGG - Chr4:88084244-88084263 MsG0480023648.01.T01:CDS 50.0%
AGGATCATGGATGTCCCTGA+GGG - Chr4:88083901-88083920 MsG0480023648.01.T01:CDS 50.0%
ATTGAATCATGCCCACCACC+TGG - Chr4:88083631-88083650 MsG0480023648.01.T01:CDS 50.0%
CCTGTTCTCGGTATCTGCTA+CGG - Chr4:88082526-88082545 MsG0480023648.01.T01:intron 50.0%
CGAAGTCGAGGATGAGAACT+AGG + Chr4:88082300-88082319 None:intergenic 50.0%
CGTGACTGAAGGAAATGCCT+TGG - Chr4:88083981-88084000 MsG0480023648.01.T01:intron 50.0%
CTAAAACGTCATCCCTTCCC+TGG - Chr4:88083928-88083947 MsG0480023648.01.T01:CDS 50.0%
CTCAGCAGGAAAAAGAGCAG+AGG + Chr4:88082641-88082660 None:intergenic 50.0%
GAAGATGGAGGATGTGTTGG+AGG - Chr4:88083112-88083131 MsG0480023648.01.T01:CDS 50.0%
GAGAGAAAACGGAGAGGCTT+CGG + Chr4:88082357-88082376 None:intergenic 50.0%
GATGTTCTCCGACAGGTACA+TGG - Chr4:88084003-88084022 MsG0480023648.01.T01:intron 50.0%
GATTTCAGCAGGGTGGAAGA+TGG - Chr4:88083097-88083116 MsG0480023648.01.T01:CDS 50.0%
GCACAACACGATTCACACCA+CGG + Chr4:88084900-88084919 None:intergenic 50.0%
GCAGCATCAACACACTCAAC+TGG + Chr4:88083446-88083465 None:intergenic 50.0%
GCCACGACATTGAAACCAGA+AGG + Chr4:88082721-88082740 None:intergenic 50.0%
GCGCTGCTTCAAGCTTTCTA+GGG + Chr4:88082241-88082260 None:intergenic 50.0%
GGAAGGGTTGAGTTCAGTGA+TGG + Chr4:88082410-88082429 None:intergenic 50.0%
GTGGAAGATGGAGGATGTGT+TGG - Chr4:88083109-88083128 MsG0480023648.01.T01:CDS 50.0%
TAAGGAGCAGGAACGTGTGA+TGG - Chr4:88083394-88083413 MsG0480023648.01.T01:CDS 50.0%
TACCTGTCGGAGAACATCCA+AGG + Chr4:88084001-88084020 None:intergenic 50.0%
TGCCCATTGAAGAAAGCCGT+CGG + Chr4:88082491-88082510 None:intergenic 50.0%
TGCGCTGCTTCAAGCTTTCT+AGG + Chr4:88082242-88082261 None:intergenic 50.0%
TGGTCTTCAGTATCACCCTG+AGG - Chr4:88082795-88082814 MsG0480023648.01.T01:intron 50.0%
TGTATTGGGAACCGAAGTCG+AGG + Chr4:88082312-88082331 None:intergenic 50.0%
TTGGAGGGAAGGGATTGAAG+CGG - Chr4:88085076-88085095 MsG0480023648.01.T01:CDS 50.0%
TTTGTGGGATTTCAGCAGGG+TGG - Chr4:88083090-88083109 MsG0480023648.01.T01:intron 50.0%
! ATTGTTTTCCCCTCTTGCCG+GGG - Chr4:88085052-88085071 MsG0480023648.01.T01:CDS 50.0%
! GGCTCTTGATGGTATGGGAA+TGG + Chr4:88083669-88083688 None:intergenic 50.0%
! TCAGGAGTGTGAACAGAGTG+GGG + Chr4:88082454-88082473 None:intergenic 50.0%
! TTTTCCCACTTCCAGGTGGT+GGG + Chr4:88083645-88083664 None:intergenic 50.0%
!! GAAGAGAAGAAGTGCCGTTG+AGG + Chr4:88082384-88082403 None:intergenic 50.0%
!! GAATGGGTTTTCCCACTTCC+AGG + Chr4:88083652-88083671 None:intergenic 50.0%
!! GGCTCTGAGTGCAACAACAT+GGG + Chr4:88084230-88084249 None:intergenic 50.0%
AAGGTGACTCATACGCCGGA+GGG - Chr4:88083035-88083054 MsG0480023648.01.T01:intron 55.0%
AATCCCTTCCCTCCAATCCC+CGG + Chr4:88085072-88085091 None:intergenic 55.0%
ACCACCGGAGAGAATGACGA+GGG + Chr4:88082431-88082450 None:intergenic 55.0%
CAGCTTCTTGTCAGCCGTCT+TGG - Chr4:88082553-88082572 MsG0480023648.01.T01:intron 55.0%
CCCATTGAAGAAAGCCGTCG+GGG + Chr4:88082489-88082508 None:intergenic 55.0%
CCCCGACGGCTTTCTTCAAT+GGG - Chr4:88082486-88082505 MsG0480023648.01.T01:CDS 55.0%
CCGTAGCAGATACCGAGAAC+AGG + Chr4:88082529-88082548 None:intergenic 55.0%
CCTTCCCTCGTCATTCTCTC+CGG - Chr4:88082424-88082443 MsG0480023648.01.T01:CDS 55.0%
CGGAGAGAATGACGAGGGAA+GGG + Chr4:88082426-88082445 None:intergenic 55.0%
CTTCTTGTCAGCCGTCTTGG+CGG - Chr4:88082556-88082575 MsG0480023648.01.T01:intron 55.0%
GAGGATCATGGATGTCCCTG+AGG - Chr4:88083900-88083919 MsG0480023648.01.T01:CDS 55.0%
GCCCATTGAAGAAAGCCGTC+GGG + Chr4:88082490-88082509 None:intergenic 55.0%
GGCAGAGAGAGAAAACGGAG+AGG + Chr4:88082363-88082382 None:intergenic 55.0%
GTCGGTAACACGCAGGAGTA+TGG - Chr4:88082589-88082608 MsG0480023648.01.T01:intron 55.0%
GTCGTGGCACGAAGTCAACA+AGG - Chr4:88082733-88082752 MsG0480023648.01.T01:intron 55.0%
TAACTGCAAGACCAGGCCCA+GGG + Chr4:88083948-88083967 None:intergenic 55.0%
TCCCCGACGGCTTTCTTCAA+TGG - Chr4:88082485-88082504 MsG0480023648.01.T01:CDS 55.0%
TGCCTTGGATGTTCTCCGAC+AGG - Chr4:88083996-88084015 MsG0480023648.01.T01:intron 55.0%
TGGAGGGAAGGGATTGAAGC+GGG - Chr4:88085077-88085096 MsG0480023648.01.T01:CDS 55.0%
TGGGAAGGTGACTCATACGC+CGG - Chr4:88083031-88083050 MsG0480023648.01.T01:intron 55.0%
TTCAGCAGGGTGGAAGATGG+AGG - Chr4:88083100-88083119 MsG0480023648.01.T01:CDS 55.0%
TTCGGATACGGCGAGTGATG+AGG + Chr4:88082339-88082358 None:intergenic 55.0%
TTGAAGAAAGCCGTCGGGGA+AGG + Chr4:88082485-88082504 None:intergenic 55.0%
TTTGGCAGAGGGGTTCTCGA+TGG + Chr4:88082770-88082789 None:intergenic 55.0%
! GCTCAGGTGACCACTAGTCT+CGG - Chr4:88083283-88083302 MsG0480023648.01.T01:intron 55.0%
! GTAACACGCAGGAGTATGGC+CGG - Chr4:88082593-88082612 MsG0480023648.01.T01:intron 55.0%
! GTTCTGGGTGACGTGACTGA+AGG - Chr4:88083970-88083989 MsG0480023648.01.T01:intron 55.0%
! GTTTTCCCACTTCCAGGTGG+TGG + Chr4:88083646-88083665 None:intergenic 55.0%
! TGGGTTTTCCCACTTCCAGG+TGG + Chr4:88083649-88083668 None:intergenic 55.0%
!! CGGCTCTGAGTGCAACAACA+TGG + Chr4:88084231-88084250 None:intergenic 55.0%
AAAGCCGTCGGGGAAGGAAG+GGG + Chr4:88082479-88082498 None:intergenic 60.0%
ACTCCTGCGTGTTACCGACG+CGG + Chr4:88082588-88082607 None:intergenic 60.0%
AGAAAGCCGTCGGGGAAGGA+AGG + Chr4:88082481-88082500 None:intergenic 60.0%
AGCTTGAAGCAGCGCAGCCA+TGG - Chr4:88082246-88082265 MsG0480023648.01.T01:three_prime_UTR 60.0%
CATGCCCACCACCTGGAAGT+GGG - Chr4:88083638-88083657 MsG0480023648.01.T01:CDS 60.0%
CCGGAGAGAATGACGAGGGA+AGG + Chr4:88082427-88082446 None:intergenic 60.0%
CTAACTGCAAGACCAGGCCC+AGG + Chr4:88083949-88083968 None:intergenic 60.0%
GAAAGCCGTCGGGGAAGGAA+GGG + Chr4:88082480-88082499 None:intergenic 60.0%
GAAGGTGACTCATACGCCGG+AGG - Chr4:88083034-88083053 MsG0480023648.01.T01:intron 60.0%
GACCACCGGAGAGAATGACG+AGG + Chr4:88082432-88082451 None:intergenic 60.0%
GACTCATACGCCGGAGGGAA+TGG - Chr4:88083040-88083059 MsG0480023648.01.T01:intron 60.0%
GATTCCCCTTCCTTCCCCGA+CGG - Chr4:88082472-88082491 MsG0480023648.01.T01:CDS 60.0%
GTGAACAGAGTGGGGACCAC+CGG + Chr4:88082446-88082465 None:intergenic 60.0%
TCATGCCCACCACCTGGAAG+TGG - Chr4:88083637-88083656 MsG0480023648.01.T01:CDS 60.0%
TCCCTCGTCATTCTCTCCGG+TGG - Chr4:88082427-88082446 MsG0480023648.01.T01:CDS 60.0%
TCGGGGAAGGAAGGGGAATC+AGG + Chr4:88082472-88082491 None:intergenic 60.0%
TTGCCGGGGATTGGAGGGAA+GGG - Chr4:88085066-88085085 MsG0480023648.01.T01:CDS 60.0%
TTTCCCCTCTTGCCGGGGAT+TGG - Chr4:88085057-88085076 MsG0480023648.01.T01:CDS 60.0%
CCCTCCAATCCCCGGCAAGA+GGG + Chr4:88085064-88085083 None:intergenic 65.0%
CCCTCTTGCCGGGGATTGGA+GGG - Chr4:88085061-88085080 MsG0480023648.01.T01:CDS 65.0%
CCTCCAATCCCCGGCAAGAG+GGG + Chr4:88085063-88085082 None:intergenic 65.0%
CGCGGACTTCACCGCCAAGA+CGG + Chr4:88082570-88082589 None:intergenic 65.0%
CTTGCCGGGGATTGGAGGGA+AGG - Chr4:88085065-88085084 MsG0480023648.01.T01:CDS 65.0%
CTTGGCGGTGAAGTCCGCGT+CGG - Chr4:88082571-88082590 MsG0480023648.01.T01:intron 65.0%
GCAAGACCAGGCCCAGGGAA+GGG + Chr4:88083943-88083962 None:intergenic 65.0%
GGGGTTCTCGATGGCAGCGA+CGG + Chr4:88082761-88082780 None:intergenic 65.0%
TCCCTCCAATCCCCGGCAAG+AGG + Chr4:88085065-88085084 None:intergenic 65.0%
TGCAAGACCAGGCCCAGGGA+AGG + Chr4:88083944-88083963 None:intergenic 65.0%
! AGTCCGCGTCGGTAACACGC+AGG - Chr4:88082582-88082601 MsG0480023648.01.T01:intron 65.0%
! CACGCAGGAGTATGGCCGGA+TGG - Chr4:88082597-88082616 MsG0480023648.01.T01:intron 65.0%
CCCCTCTTGCCGGGGATTGG+AGG - Chr4:88085060-88085079 MsG0480023648.01.T01:CDS 70.0%
CGTCATCCCTTCCCTGGGCC+TGG - Chr4:88083934-88083953 MsG0480023648.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88082156 88085221 88082156 ID=MsG0480023648.01;Name=MsG0480023648.01
Chr4 mRNA 88082156 88085221 88082156 ID=MsG0480023648.01.T01;Parent=MsG0480023648.01;Name=MsG0480023648.01.T01;_AED=0.50;_eAED=0.50;_QI=109|0.83|0.71|1|1|1|7|258|508
Chr4 exon 88082156 88082537 88082156 ID=MsG0480023648.01.T01:exon:6449;Parent=MsG0480023648.01.T01
Chr4 exon 88083096 88083271 88083096 ID=MsG0480023648.01.T01:exon:6448;Parent=MsG0480023648.01.T01
Chr4 exon 88083360 88083491 88083360 ID=MsG0480023648.01.T01:exon:6447;Parent=MsG0480023648.01.T01
Chr4 exon 88083612 88083766 88083612 ID=MsG0480023648.01.T01:exon:6446;Parent=MsG0480023648.01.T01
Chr4 exon 88083850 88083986 88083850 ID=MsG0480023648.01.T01:exon:6445;Parent=MsG0480023648.01.T01
Chr4 exon 88084089 88084339 88084089 ID=MsG0480023648.01.T01:exon:6444;Parent=MsG0480023648.01.T01
Chr4 exon 88084561 88085221 88084561 ID=MsG0480023648.01.T01:exon:6443;Parent=MsG0480023648.01.T01
Chr4 five_prime_UTR 88085113 88085221 88085113 ID=MsG0480023648.01.T01:five_prime_utr;Parent=MsG0480023648.01.T01
Chr4 CDS 88084561 88085112 88084561 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88084089 88084339 88084089 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88083850 88083986 88083850 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88083612 88083766 88083612 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88083360 88083491 88083360 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88083096 88083271 88083096 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 CDS 88082414 88082537 88082414 ID=MsG0480023648.01.T01:cds;Parent=MsG0480023648.01.T01
Chr4 three_prime_UTR 88082156 88082413 88082156 ID=MsG0480023648.01.T01:three_prime_utr;Parent=MsG0480023648.01.T01
Gene Sequence

>MsG0480023648.01.T01

ATGGCAATAGATCCAAAACAAGTAAAATCAGACCTAGTTCTCATCCTCGACTTCGGTTCCCAATACACTCACCTCATCACTCGCCGTATCCGAAGCCTCTCCGTTTTCTCTCTCTGCCTCAACGGCACTTCTTCTCTTCAATCCATCACTGAACTCAACCCTTCCCTCGTCATTCTCTCCGGTGGTCCCCACTCTGTTCACACTCCTGATTCCCCTTCCTTCCCCGACGGCTTTCTTCAATGGGCACAGTCCAATGCTGTACCTGTTCTCGGTATCTGCTACGGTCTTCAGCTTCTTGTCAGCCGTCTTGGCGGTGAAGTCCGCGTCGGTAACACGCAGGAGTATGGCCGGATGGAAATTAAGGTCGAAAACGCCTCTGCTCTTTTTCCTGCTGAGAAAGTTGGACATAATCAGATTGTTTGGATGAGTCATGGTGATGAAGCTGTTACTCTTCCTTCTGGTTTCAATGTCGTGGCACGAAGTCAACAAGGCGCCGTCGCTGCCATCGAGAACCCCTCTGCCAAATTTTATGGTCTTCAGTATCACCCTGAGGTGACTCATACGCCGGAGGGAATGGAAACACTGAAGCATTTTCTATTTGATGTTTGTGGGATTTCAGCAGGGTGGAAGATGGAGGATGTGTTGGAGGAAGAAATCAAAGTGATTAATAATACAGTGGGGCCTGATGAGCATGTCATTTGTGCCTTATCTGGTGGTGTTGATTCCACTGTTGCTGCTACCATAGTTCATAAAGCCATTGGGGATAGGCTTCATTGTGTTTTTGTTGACAATGGCTTGCTCAGGTATAAGGAGCAGGAACGTGTGATGGAAACCTTTAAAAAGGATCTTCATTTACCAGTTGAGTGTGTTGATGCTGCAGACCAATTTCTTACAAAGCTTCAAGGTGTGACAGATCCTGAAGTAAAGAGGAAAATTATTGGGAACTTGTACCCTGATGTGATTGAATCATGCCCACCACCTGGAAGTGGGAAAACCCATTCCCATACCATCAAGAGCCATCATAATGTCGGTGGTCTTCCAAAGGATATGAAATTGAAACTCATTGAGCCACTTAAACTACTTTTCAAGGATGAGGTACGTCAATTAGGGAGGATCATGGATGTCCCTGAGGGATTTCTAAAACGTCATCCCTTCCCTGGGCCTGGTCTTGCAGTTAGAGTTCTGGGTGACGTGACTGAAGGAAATGCCTTGGATGTTCTCCGACAGGTTGATGAGATTTTCATTCAGTCAATCAAAGATGCTGGCCTTTATGACGTAATATGGCAAGCCTTTGCAGTTTTCTTACCAGTAAGATCTGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCACTCAGAGCCGTGACAAGTCAAGATGGAATGACAGCAGACTGGTACTACTTTGAGCACAAGTTCCTTGATGATGTTTCACGCAAAATCTGTAATGGTGTCCGTGGTGTGAATCGTGTTGTGCAAGATATTACGTCAAAGCCTCCTTCAACAATTGAGTGGGAATAA
Protein sequence

>MsG0480023648.01.T01

MAIDPKQVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCLNGTSSLQSITELNPSLVILSGGPHSVHTPDSPSFPDGFLQWAQSNAVPVLGICYGLQLLVSRLGGEVRVGNTQEYGRMEIKVENASALFPAEKVGHNQIVWMSHGDEAVTLPSGFNVVARSQQGAVAAIENPSAKFYGLQYHPEVTHTPEGMETLKHFLFDVCGISAGWKMEDVLEEEIKVINNTVGPDEHVICALSGGVDSTVAATIVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKKDLHLPVECVDAADQFLTKLQGVTDPEVKRKIIGNLYPDVIESCPPPGSGKTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIMDVPEGFLKRHPFPGPGLAVRVLGDVTEGNALDVLRQVDEIFIQSIKDAGLYDVIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVSRKICNGVRGVNRVVQDITSKPPSTIEWE*