AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029155.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029155.01.T02 MTR_5g081980 78.431 204 24 3 6 204 122 310 6.12e-104 302
MsG0580029155.01.T02 MTR_3g070180 75.243 206 25 3 6 203 122 309 1.13e-97 286
MsG0580029155.01.T01 MTR_5g081980 95.455 110 5 0 1 110 1 110 1.17e-74 224
MsG0580029155.01.T01 MTR_3g070180 90.000 110 11 0 1 110 1 110 8.89e-71 214
MsG0580029155.01.T01 MTR_5g082000 48.864 88 40 3 19 105 21 104 2.35e-17 75.5
MsG0580029155.01.T01 MTR_3g070190 48.864 88 40 3 19 105 25 108 5.58e-17 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029155.01.T02 AT5G05780 70.388 206 35 3 5 202 121 308 5.49e-92 271
MsG0580029155.01.T02 AT3G11270 70.443 203 34 3 5 199 121 305 6.38e-90 266
MsG0580029155.01.T02 AT5G05780 68.932 206 35 4 5 202 121 305 6.53e-88 261
MsG0580029155.01.T02 AT3G11270 68.966 203 34 4 5 199 121 302 7.09e-86 256
MsG0580029155.01.T01 AT5G05780 87.273 110 14 0 1 110 1 110 1.27e-67 206
MsG0580029155.01.T01 AT5G05780 87.273 110 14 0 1 110 1 110 1.34e-67 206
MsG0580029155.01.T01 AT3G11270 87.273 110 14 0 1 110 1 110 1.93e-67 205
MsG0580029155.01.T01 AT3G11270 87.273 110 14 0 1 110 1 110 2.13e-67 205
MsG0580029155.01.T01 AT2G39990 44.318 88 44 3 19 105 30 113 3.60e-17 75.5

Find 74 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGTCGTTGGAGTTCTTCT+TGG 0.238114 5:-92994149 MsG0580029155.01.T01:CDS
ATTATAACCAAAACGGGATT+TGG 0.243791 5:+92993010 None:intergenic
GTAGGAATTCCCAACTCTTT+AGG 0.247111 5:+92992977 None:intergenic
TTCGCACACAGAACAAAATT+AGG 0.253327 5:-92994327 MsG0580029155.01.T01:five_prime_UTR
TACAGCAGGAAGTTGAGATT+TGG 0.286847 5:-92989907 MsG0580029155.01.T01:three_prime_UTR
GACGCGTTTGCGAGTGTCTT+TGG 0.305618 5:+92994166 None:intergenic
TTGTTTCAACTGAAAGGTTT+TGG 0.324791 5:-92994409 MsG0580029155.01.T01:five_prime_UTR
CTCTGTTGCAAGGGTGCTAA+TGG 0.335329 5:+92991481 None:intergenic
GTTAATGAAATACATGTATA+TGG 0.355019 5:-92989780 MsG0580029155.01.T01:three_prime_UTR
CTATGTTCCAAATCCCGTTT+TGG 0.360839 5:-92993017 MsG0580029155.01.T01:three_prime_UTR
TATACATTGATTCCTTTCAT+TGG 0.367276 5:-92991437 MsG0580029155.01.T01:intron
TGCGAATCGATGAATGAATA+TGG 0.372061 5:+92994344 None:intergenic
AAGATCATTTCTCGCAGTTT+CGG 0.379508 5:+92993694 None:intergenic
ACAGCAGGAAGTTGAGATTT+GGG 0.387193 5:-92989906 MsG0580029155.01.T01:three_prime_UTR
GGAGCCAACTGACAACCTTC+TGG 0.390723 5:-92989827 MsG0580029155.01.T01:three_prime_UTR
ACATCAATTATAACCAAAAC+GGG 0.396892 5:+92993004 None:intergenic
TCGCACACAGAACAAAATTA+GGG 0.397850 5:-92994326 MsG0580029155.01.T01:five_prime_UTR
GATTTGGGAGGGTTGATACT+TGG 0.398361 5:-92989891 MsG0580029155.01.T01:three_prime_UTR
AATTTGTTGCAATAGTTGAT+AGG 0.412289 5:+92989584 None:intergenic
ATGACAAGGATCCTAGCATT+TGG 0.417257 5:-92993914 MsG0580029155.01.T01:CDS
TGAAAACTAATGATCAAATC+TGG 0.418994 5:-92990373 MsG0580029155.01.T01:three_prime_UTR
CTTCTTGGTTCCTCTTTGAA+AGG 0.421791 5:-92994134 MsG0580029155.01.T01:CDS
AACATCAATTATAACCAAAA+CGG 0.431934 5:+92993003 None:intergenic
ATGTATATTGCTTCTGCTCG+TGG 0.434737 5:-92989729 MsG0580029155.01.T01:three_prime_UTR
TTTAGCAAGGAGGGCATTTG+TGG 0.444601 5:-92993734 MsG0580029155.01.T01:intron
GATGTTGAACCTAAAGAGTT+GGG 0.449227 5:-92992986 MsG0580029155.01.T01:three_prime_UTR
TGATAGGTACTTCTGTTAAA+CGG 0.459789 5:+92989600 None:intergenic
TTAGCAAGGAGGGCATTTGT+GGG 0.472856 5:-92993733 MsG0580029155.01.T01:intron
TCCTTGTCATCTTCTTCAAA+CGG 0.478344 5:+92993927 None:intergenic
TTTGTGGGGTGGTATAGTAC+TGG 0.479964 5:-92993718 MsG0580029155.01.T01:CDS
TGTATATTGCTTCTGCTCGT+GGG 0.481276 5:-92989728 MsG0580029155.01.T01:three_prime_UTR
TCTCAACTTCCTGCTGTACT+TGG 0.483401 5:+92989912 None:intergenic
TGATGTTGAACCTAAAGAGT+TGG 0.483855 5:-92992987 MsG0580029155.01.T01:three_prime_UTR
GTATAACAAAAGTGAGCAAA+AGG 0.484782 5:+92991455 None:intergenic
TTGTTTAAAATGATAATACA+TGG 0.503891 5:-92989852 MsG0580029155.01.T01:three_prime_UTR
TCTATGTTCAAGAGAATCAA+TGG 0.505078 5:-92993858 MsG0580029155.01.T01:intron
TGCTCAACAAAGAACATGAA+AGG 0.510479 5:-92989962 MsG0580029155.01.T01:three_prime_UTR
CTTCCTGCTGTACTTGGTAC+AGG 0.516124 5:+92989918 None:intergenic
TGCTGTTGAGGAGGTTAAAG+AGG 0.523785 5:-92992942 MsG0580029155.01.T01:intron
GACACTCGCAAACGCGTCGT+TGG 0.526211 5:-92994161 MsG0580029155.01.T01:CDS
CCTTGTTGTTAATCAAGTTG+TGG 0.533219 5:+92990310 None:intergenic
GCTCAACAAAGAACATGAAA+GGG 0.533816 5:-92989961 MsG0580029155.01.T01:three_prime_UTR
AAGTTCTTGTTTCAACTGAA+AGG 0.537060 5:-92994415 None:intergenic
TAGCAAGGAGGGCATTTGTG+GGG 0.538922 5:-92993732 MsG0580029155.01.T01:CDS
CAAAAGGCACCTCTGTTGCA+AGG 0.539561 5:+92991471 None:intergenic
CAAGGAGGGCATTTGTGGGG+TGG 0.540121 5:-92993729 MsG0580029155.01.T01:CDS
TGATCAAGAAACCAAATGCT+AGG 0.549445 5:+92993903 None:intergenic
CAGGAAGTTGAGATTTGGGA+GGG 0.550146 5:-92989902 MsG0580029155.01.T01:three_prime_UTR
GGTTGATACTTGGAGTTCGA+AGG 0.553346 5:-92989881 MsG0580029155.01.T01:three_prime_UTR
ACATTTGCTTAGAGATGTGA+AGG 0.560287 5:-92991510 MsG0580029155.01.T01:three_prime_UTR
ACTATGCTGAGTAAAACTAA+AGG 0.568083 5:+92994209 None:intergenic
AAAAGCTTACTATGCTGTTG+AGG 0.571528 5:-92992954 MsG0580029155.01.T01:three_prime_UTR
ATCACGAAGAAACAAGAAAG+AGG 0.572273 5:-92994376 MsG0580029155.01.T01:five_prime_UTR
ACATTGTGATGGAAGCCGCC+AGG 0.575900 5:+92989653 None:intergenic
GTGCCTGTACCAAGTACAGC+AGG 0.578421 5:-92989921 MsG0580029155.01.T01:three_prime_UTR
ATTCACAAACAACACAACAA+TGG 0.581799 5:-92994288 MsG0580029155.01.T01:exon
AGCTTACTATGCTGTTGAGG+AGG 0.588880 5:-92992951 MsG0580029155.01.T01:three_prime_UTR
CATTAGCACCCTTGCAACAG+AGG 0.592118 5:-92991480 MsG0580029155.01.T01:intron
ACGAGCAGAAGCAATATACA+TGG 0.595695 5:+92989731 None:intergenic
CCACAACTTGATTAACAACA+AGG 0.604169 5:-92990310 MsG0580029155.01.T01:intron
TTAAAATGATAATACATGGA+CGG 0.609618 5:-92989848 MsG0580029155.01.T01:three_prime_UTR
GATATCACCAACAGCTACGC+CGG 0.611908 5:-92994104 MsG0580029155.01.T01:intron
GTTGATACTTGGAGTTCGAA+GGG 0.613965 5:-92989880 MsG0580029155.01.T01:three_prime_UTR
AAAACTTAAGAGTGACCAGA+AGG 0.615598 5:+92989812 None:intergenic
AAAAGGCACCTCTGTTGCAA+GGG 0.618690 5:+92991472 None:intergenic
GTGACCAGAAGGTTGTCAGT+TGG 0.622025 5:+92989823 None:intergenic
AGGACAACAAAACCAATGAA+AGG 0.628104 5:+92991425 None:intergenic
GCAGGAAGTTGAGATTTGGG+AGG 0.642480 5:-92989903 MsG0580029155.01.T01:three_prime_UTR
GCCGTTTGAAGAAGATGACA+AGG 0.651393 5:-92993928 MsG0580029155.01.T01:CDS
AAATACATGTATATGGCACA+AGG 0.651722 5:-92989773 MsG0580029155.01.T01:three_prime_UTR
AATTGTACCGGCGTAGCTGT+TGG 0.654663 5:+92994097 None:intergenic
ATCGACGGTGCCTTTCAAAG+AGG 0.656847 5:+92994124 None:intergenic
GTAGCTGTTGGTGATATCGA+CGG 0.656872 5:+92994109 None:intergenic
CACTTCTAATGAGAGACGAT+AGG 0.662773 5:+92990343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAGAATATAAATTTAT+AGG + Chr5:92992422-92992441 None:intergenic 10.0%
!!! ATAATTAAGTGTTATTAATA+CGG + Chr5:92992377-92992396 None:intergenic 10.0%
!!! TTTACTTTCTTTTTAAATTA+TGG - Chr5:92993016-92993035 MsG0580029155.01.T01:three_prime_UTR 10.0%
!!! ACTTCTAATCTTATTTTTAT+TGG - Chr5:92991088-92991107 MsG0580029155.01.T01:intron 15.0%
!!! ATTTGCATGTTTTTTTATAT+TGG - Chr5:92990162-92990181 MsG0580029155.01.T01:intron 15.0%
!!! TGATTTGGTTTTATATTTTT+GGG - Chr5:92993733-92993752 MsG0580029155.01.T01:intron 15.0%
!!! TGTATTATCATTTTAAACAA+CGG + Chr5:92994118-92994137 None:intergenic 15.0%
!!! TTGTTTAAAATGATAATACA+TGG - Chr5:92994118-92994137 MsG0580029155.01.T01:CDS 15.0%
!!! TTTGCATGTTTTTTTATATT+GGG - Chr5:92990163-92990182 MsG0580029155.01.T01:intron 15.0%
!! AAAAATAAATAATGCTGAGT+CGG - Chr5:92991928-92991947 MsG0580029155.01.T01:intron 20.0%
!! AAATTTGATGTGATTAAAGA+TGG - Chr5:92990186-92990205 MsG0580029155.01.T01:intron 20.0%
!! AACATCAATTATAACCAAAA+CGG + Chr5:92990970-92990989 None:intergenic 20.0%
!! AATTGTATTACTTGAAAACA+AGG + Chr5:92993350-92993369 None:intergenic 20.0%
!! ATATTTGCAAGAAAGATAAA+AGG + Chr5:92991066-92991085 None:intergenic 20.0%
!! ATTCATATAATTACATGTGT+CGG - Chr5:92989914-92989933 MsG0580029155.01.T01:three_prime_UTR 20.0%
!! ATTGAAATTGAAAATTGTAC+CGG + Chr5:92989888-92989907 None:intergenic 20.0%
!! GGTATCAAAAAAAAACTAAA+AGG + Chr5:92994299-92994318 None:intergenic 20.0%
!! GTTAATGAAATACATGTATA+TGG - Chr5:92994190-92994209 MsG0580029155.01.T01:CDS 20.0%
!! GTTATTGCTTACATATATAA+CGG - Chr5:92991864-92991883 MsG0580029155.01.T01:intron 20.0%
!! TCATAAACATAGCTATAAAA+AGG + Chr5:92990415-92990434 None:intergenic 20.0%
!! TTAAAATGATAATACATGGA+CGG - Chr5:92994122-92994141 MsG0580029155.01.T01:CDS 20.0%
!! TTTCTATTGAATCAAAGTTT+AGG - Chr5:92993888-92993907 MsG0580029155.01.T01:CDS 20.0%
!!! ATTTGTCTAATTTGATTTCT+GGG + Chr5:92991364-92991383 None:intergenic 20.0%
!!! CACATAGTTTAATTTAAAAC+TGG - Chr5:92992866-92992885 MsG0580029155.01.T01:intron 20.0%
!!! CTGATTTGGTTTTATATTTT+TGG - Chr5:92993732-92993751 MsG0580029155.01.T01:CDS 20.0%
!!! TATTTCTCATTGATGATTTT+TGG - Chr5:92992331-92992350 MsG0580029155.01.T01:intron 20.0%
!!! TATTTGTCTAATTTGATTTC+TGG + Chr5:92991365-92991384 None:intergenic 20.0%
!!! TGTTGATTTATTTTTTAGCA+AGG - Chr5:92990223-92990242 MsG0580029155.01.T01:intron 20.0%
!!! TTACTTCTAATTTTTGTTTC+TGG - Chr5:92992191-92992210 MsG0580029155.01.T01:intron 20.0%
!!! TTTAGTTTTTTTTTGATACC+TGG - Chr5:92994299-92994318 MsG0580029155.01.T01:five_prime_UTR 20.0%
!!! TTTTGTTTATTACTGCAATT+AGG - Chr5:92990368-92990387 MsG0580029155.01.T01:three_prime_UTR 20.0%
! AAATCAGTGACATTAAGATT+GGG + Chr5:92993467-92993486 None:intergenic 25.0%
! AATAGCAGTTTGTCTAAATT+TGG + Chr5:92990602-92990621 None:intergenic 25.0%
! AATGAGGATAATGATTATGT+TGG - Chr5:92992126-92992145 MsG0580029155.01.T01:intron 25.0%
! ACAACCAATTATTAATCCTT+AGG + Chr5:92990841-92990860 None:intergenic 25.0%
! ACATCAATTATAACCAAAAC+GGG + Chr5:92990969-92990988 None:intergenic 25.0%
! AGAGAAACAAAATGAATTAG+TGG + Chr5:92991583-92991602 None:intergenic 25.0%
! ATGAGGATAATGATTATGTT+GGG - Chr5:92992127-92992146 MsG0580029155.01.T01:intron 25.0%
! CAATAGTTCAAACAACTATT+AGG + Chr5:92992252-92992271 None:intergenic 25.0%
! CATCAATAGTTCATAGATTA+TGG + Chr5:92992786-92992805 None:intergenic 25.0%
! GAAACTTAATTGTTAGATGT+AGG - Chr5:92991169-92991188 MsG0580029155.01.T01:intron 25.0%
! GCACTGTTAAAAACAAATAA+AGG + Chr5:92990024-92990043 None:intergenic 25.0%
! TAAAAAAACAAACTATGCAG+TGG + Chr5:92990345-92990364 None:intergenic 25.0%
! TAAAAACGCAACAAATTTCA+TGG - Chr5:92989711-92989730 MsG0580029155.01.T01:three_prime_UTR 25.0%
! TCATTGAAAAATACCATTAG+AGG + Chr5:92992572-92992591 None:intergenic 25.0%
! TCTCTATGTTATCTTGATTT+GGG - Chr5:92993370-92993389 MsG0580029155.01.T01:intron 25.0%
! TGAAAACTAATGATCAAATC+TGG - Chr5:92993597-92993616 MsG0580029155.01.T01:intron 25.0%
! TGGTATGAAAGATTATTGTT+TGG - Chr5:92990132-92990151 MsG0580029155.01.T01:intron 25.0%
! TTCTCTATGTTATCTTGATT+TGG - Chr5:92993369-92993388 MsG0580029155.01.T01:intron 25.0%
! TTGCATCATGAACAAAATAA+AGG + Chr5:92991341-92991360 None:intergenic 25.0%
!! TATAGCTTTTGCAAAAAATG+CGG - Chr5:92990528-92990547 MsG0580029155.01.T01:intron 25.0%
!!! AATTTGTTGCAATAGTTGAT+AGG + Chr5:92994389-92994408 None:intergenic 25.0%
!!! ATCCTCATTTTTAAATAGTG+AGG + Chr5:92992115-92992134 None:intergenic 25.0%
!!! GATTATTCTTTTTTGACACA+TGG - Chr5:92992600-92992619 MsG0580029155.01.T01:intron 25.0%
!!! GATTTATTTTTTAGCAAGGA+GGG - Chr5:92990227-92990246 MsG0580029155.01.T01:intron 25.0%
!!! TATACATTGATTCCTTTCAT+TGG - Chr5:92992533-92992552 MsG0580029155.01.T01:intron 25.0%
!!! TGATTTATTTTTTAGCAAGG+AGG - Chr5:92990226-92990245 MsG0580029155.01.T01:intron 25.0%
AAAAATATGGAGTGTATGAG+AGG + Chr5:92991634-92991653 None:intergenic 30.0%
AAAGCTCAAGAAACAAAACA+TGG + Chr5:92993831-92993850 None:intergenic 30.0%
AAATACATGTATATGGCACA+AGG - Chr5:92994197-92994216 MsG0580029155.01.T01:CDS 30.0%
AAATCAATTTAGTCCTCCTT+AGG - Chr5:92993799-92993818 MsG0580029155.01.T01:intron 30.0%
AACACACCCAAAAAAAACTT+AGG + Chr5:92993103-92993122 None:intergenic 30.0%
AATCAATTTAGTCCTCCTTA+GGG - Chr5:92993800-92993819 MsG0580029155.01.T01:intron 30.0%
AATCATTCTGCTTTATGTGA+TGG - Chr5:92991120-92991139 MsG0580029155.01.T01:intron 30.0%
ACACACCCAAAAAAAACTTA+GGG + Chr5:92993102-92993121 None:intergenic 30.0%
ACTATGCTGAGTAAAACTAA+AGG + Chr5:92989764-92989783 None:intergenic 30.0%
AGAAATAGCAGATAGTGTAA+TGG + Chr5:92992318-92992337 None:intergenic 30.0%
AGTAACCTTTGCTTTCTTTA+GGG - Chr5:92992926-92992945 MsG0580029155.01.T01:intron 30.0%
ATAGCTATGTTTATGACTCT+AGG - Chr5:92990419-92990438 MsG0580029155.01.T01:intron 30.0%
ATTATAACCAAAACGGGATT+TGG + Chr5:92990963-92990982 None:intergenic 30.0%
ATTCACAAACAACACAACAA+TGG - Chr5:92989682-92989701 MsG0580029155.01.T01:three_prime_UTR 30.0%
CAAATCAGTGACATTAAGAT+TGG + Chr5:92993468-92993487 None:intergenic 30.0%
CAAGCTTTCTTATGTAACAA+AGG + Chr5:92993921-92993940 None:intergenic 30.0%
CATATATCAACCTAAATTCC+TGG + Chr5:92992830-92992849 None:intergenic 30.0%
CTTCATGTTAAACATTGTGA+TGG + Chr5:92994331-92994350 None:intergenic 30.0%
GAAATAGCAGATAGTGTAAT+GGG + Chr5:92992317-92992336 None:intergenic 30.0%
GAACATCAATAATCGATAAG+AGG + Chr5:92990909-92990928 None:intergenic 30.0%
GACATGGTAAAACACAATAT+TGG + Chr5:92993410-92993429 None:intergenic 30.0%
GCAACCTAAGGATTAATAAT+TGG - Chr5:92990834-92990853 MsG0580029155.01.T01:intron 30.0%
GTATAACAAAAGTGAGCAAA+AGG + Chr5:92992518-92992537 None:intergenic 30.0%
GTATTAGTGAAGAGAGAATA+TGG + Chr5:92992038-92992057 None:intergenic 30.0%
GTTAGATGTAGGAACTTAAA+TGG - Chr5:92991180-92991199 MsG0580029155.01.T01:intron 30.0%
TAAAATTCCGCTACACAATA+GGG + Chr5:92990675-92990694 None:intergenic 30.0%
TATTGAACAACACTGTCATA+TGG + Chr5:92991729-92991748 None:intergenic 30.0%
TCATACTAAATAGTGTGTTG+CGG + Chr5:92990628-92990647 None:intergenic 30.0%
TCTATGTTCAAGAGAATCAA+TGG - Chr5:92990112-92990131 MsG0580029155.01.T01:intron 30.0%
TGAGGATAATGATTATGTTG+GGG - Chr5:92992128-92992147 MsG0580029155.01.T01:intron 30.0%
TGATAGGTACTTCTGTTAAA+CGG + Chr5:92994373-92994392 None:intergenic 30.0%
TGCCTCACTATTTAAAAATG+AGG - Chr5:92992110-92992129 MsG0580029155.01.T01:intron 30.0%
TGTGGCATAGTAATTTAAAG+AGG - Chr5:92990497-92990516 MsG0580029155.01.T01:three_prime_UTR 30.0%
TTGATGTTCGTCTCAATTTA+TGG - Chr5:92990920-92990939 MsG0580029155.01.T01:intron 30.0%
TTGTTAAATAGCAGGTATAG+CGG - Chr5:92990557-92990576 MsG0580029155.01.T01:intron 30.0%
! AAACATGACATGAGATCTTT+TGG - Chr5:92994409-92994428 MsG0580029155.01.T01:five_prime_UTR 30.0%
! GAGCTTTAGTTAAGTTGTTT+GGG - Chr5:92993844-92993863 MsG0580029155.01.T01:intron 30.0%
! GTTAGTCTGTTTGTTAGTTT+CGG - Chr5:92993239-92993258 MsG0580029155.01.T01:intron 30.0%
! TCTCATACACTCCATATTTT+TGG - Chr5:92991633-92991652 MsG0580029155.01.T01:intron 30.0%
! TGAGCTTTAGTTAAGTTGTT+TGG - Chr5:92993843-92993862 MsG0580029155.01.T01:intron 30.0%
! TGGGTTGAATTGTTTGAAAT+TGG - Chr5:92993863-92993882 MsG0580029155.01.T01:CDS 30.0%
!! TAATGTCACTGATTTGATCA+AGG - Chr5:92993472-92993491 MsG0580029155.01.T01:intron 30.0%
!! TGTTGTTTGTGAATTTTCAG+TGG + Chr5:92989676-92989695 None:intergenic 30.0%
!!! ACTCTTAAGTTTTTTCTGCA+CGG - Chr5:92994168-92994187 MsG0580029155.01.T01:CDS 30.0%
!!! AGTTTTTTTTTGATACCTGG+CGG - Chr5:92994302-92994321 MsG0580029155.01.T01:five_prime_UTR 30.0%
!!! CAACACCCTAAGTTTTTTTT+GGG - Chr5:92993094-92993113 MsG0580029155.01.T01:intron 30.0%
!!! GTTTTTTTTGGGTGTGTTTA+TGG - Chr5:92993105-92993124 MsG0580029155.01.T01:intron 30.0%
!!! TCTTTTTTGACACATGGATA+AGG - Chr5:92992606-92992625 MsG0580029155.01.T01:intron 30.0%
AAAACTTAAGAGTGACCAGA+AGG + Chr5:92994161-92994180 None:intergenic 35.0%
AAAAGCTTACTATGCTGTTG+AGG - Chr5:92991016-92991035 MsG0580029155.01.T01:intron 35.0%
AAGAGAAACTGTTATGACAC+TGG - Chr5:92991394-92991413 MsG0580029155.01.T01:intron 35.0%
AAGATCATTTCTCGCAGTTT+CGG + Chr5:92990279-92990298 None:intergenic 35.0%
ACATTTGCTTAGAGATGTGA+AGG - Chr5:92992460-92992479 MsG0580029155.01.T01:intron 35.0%
AGGACAACAAAACCAATGAA+AGG + Chr5:92992548-92992567 None:intergenic 35.0%
ATACAGGATCTCATGGTTTA+AGG + Chr5:92992746-92992765 None:intergenic 35.0%
ATACATATAGGAAAGGAGTG+GGG + Chr5:92991552-92991571 None:intergenic 35.0%
ATCACGAAGAAACAAGAAAG+AGG - Chr5:92989594-92989613 MsG0580029155.01.T01:three_prime_UTR 35.0%
ATTTCCTACCACTTCAATAG+AGG - Chr5:92991821-92991840 MsG0580029155.01.T01:intron 35.0%
CATACATATAGGAAAGGAGT+GGG + Chr5:92991553-92991572 None:intergenic 35.0%
CCAAAAAAAACTTAGGGTGT+TGG + Chr5:92993096-92993115 None:intergenic 35.0%
CCACAACTTGATTAACAACA+AGG - Chr5:92993660-92993679 MsG0580029155.01.T01:intron 35.0%
CTAAAATTCCGCTACACAAT+AGG + Chr5:92990676-92990695 None:intergenic 35.0%
CTAGCAAAATAAACAGGACA+TGG + Chr5:92993426-92993445 None:intergenic 35.0%
CTGCTATGCTATTACATATC+AGG - Chr5:92991761-92991780 MsG0580029155.01.T01:intron 35.0%
CTTTGCTCTGTAGATAGTTT+GGG + Chr5:92991465-92991484 None:intergenic 35.0%
GAAATAGGTATGTCATGGAA+TGG - Chr5:92991288-92991307 MsG0580029155.01.T01:three_prime_UTR 35.0%
GACAATCTCGTTTGTCATAT+AGG - Chr5:92992631-92992650 MsG0580029155.01.T01:intron 35.0%
GAGTAACCTTTGCTTTCTTT+AGG - Chr5:92992925-92992944 MsG0580029155.01.T01:intron 35.0%
GATGTTGAACCTAAAGAGTT+GGG - Chr5:92990984-92991003 MsG0580029155.01.T01:intron 35.0%
GCTCAACAAAGAACATGAAA+GGG - Chr5:92994009-92994028 MsG0580029155.01.T01:intron 35.0%
GTATGACCACACCAAAAATA+TGG + Chr5:92991647-92991666 None:intergenic 35.0%
GTTTATGGTAAAAAGCTCTG+TGG - Chr5:92993120-92993139 MsG0580029155.01.T01:intron 35.0%
TAATGATTATGTTGGGGAAG+AGG - Chr5:92992134-92992153 MsG0580029155.01.T01:intron 35.0%
TAATTATACCGAGTGTAGCT+TGG - Chr5:92990449-92990468 MsG0580029155.01.T01:intron 35.0%
TACAGGATCTCATGGTTTAA+GGG + Chr5:92992745-92992764 None:intergenic 35.0%
TACGTCCTAGCAAAATAAAC+AGG + Chr5:92993432-92993451 None:intergenic 35.0%
TCCTTGTCATCTTCTTCAAA+CGG + Chr5:92990046-92990065 None:intergenic 35.0%
TCGCACACAGAACAAAATTA+GGG - Chr5:92989644-92989663 MsG0580029155.01.T01:intron 35.0%
TCTAAATTTGGCTATGCTAG+AGG + Chr5:92990590-92990609 None:intergenic 35.0%
TCTATGAACTATTGATGCTC+TGG - Chr5:92992789-92992808 MsG0580029155.01.T01:intron 35.0%
TGAAAAATACCATTAGAGGC+AGG + Chr5:92992568-92992587 None:intergenic 35.0%
TGAAGAGAGAATATGGAGAT+TGG + Chr5:92992031-92992050 None:intergenic 35.0%
TGAGGATTCATTGAAGTTGA+AGG - Chr5:92992084-92992103 MsG0580029155.01.T01:intron 35.0%
TGATCAAGAAACCAAATGCT+AGG + Chr5:92990070-92990089 None:intergenic 35.0%
TGATGTTGAACCTAAAGAGT+TGG - Chr5:92990983-92991002 MsG0580029155.01.T01:intron 35.0%
TGCGAATCGATGAATGAATA+TGG + Chr5:92989629-92989648 None:intergenic 35.0%
TGCTCAACAAAGAACATGAA+AGG - Chr5:92994008-92994027 MsG0580029155.01.T01:intron 35.0%
TTAGTGATGAGAGTTTACCT+AGG + Chr5:92991993-92992012 None:intergenic 35.0%
TTCGCACACAGAACAAAATT+AGG - Chr5:92989643-92989662 MsG0580029155.01.T01:intron 35.0%
TTGAGGAAATAGGTATGTCA+TGG - Chr5:92991283-92991302 MsG0580029155.01.T01:three_prime_UTR 35.0%
TTTCTTATGTAACAAAGGCC+TGG + Chr5:92993916-92993935 None:intergenic 35.0%
TTTGGTTGTAGGGTTTAGAA+GGG - Chr5:92992953-92992972 MsG0580029155.01.T01:three_prime_UTR 35.0%
! ACAGCATAGTAAGCTTTTGT+AGG + Chr5:92991014-92991033 None:intergenic 35.0%
! ATTCTGCTTTATGTGATGGA+AGG - Chr5:92991124-92991143 MsG0580029155.01.T01:intron 35.0%
! CAAACTATGCAGTGGATTTA+AGG + Chr5:92990337-92990356 None:intergenic 35.0%
! GTTATTGTTGTCTGCTGATT+TGG - Chr5:92993718-92993737 MsG0580029155.01.T01:CDS 35.0%
! TGAATCAAAGTTTAGGATCC+AGG - Chr5:92993895-92993914 MsG0580029155.01.T01:CDS 35.0%
!! ATAGTGTAATGGGCAAATAG+TGG + Chr5:92992307-92992326 None:intergenic 35.0%
!! CCTTGTTGTTAATCAAGTTG+TGG + Chr5:92993663-92993682 None:intergenic 35.0%
!!! CATGTCCTGTTTATTTTGCT+AGG - Chr5:92993424-92993443 MsG0580029155.01.T01:intron 35.0%
!!! CCAACACCCTAAGTTTTTTT+TGG - Chr5:92993093-92993112 MsG0580029155.01.T01:intron 35.0%
!!! TACACTCCATATTTTTGGTG+TGG - Chr5:92991638-92991657 MsG0580029155.01.T01:intron 35.0%
AAAAAGCTCTGTGGATAGTC+AGG - Chr5:92993129-92993148 MsG0580029155.01.T01:intron 40.0%
AAAAGCTCTGTGGATAGTCA+GGG - Chr5:92993130-92993149 MsG0580029155.01.T01:intron 40.0%
AACAACACTGTCATATGGAC+AGG + Chr5:92991724-92991743 None:intergenic 40.0%
AACCAACCTGCAAATGATAC+AGG + Chr5:92992762-92992781 None:intergenic 40.0%
AATTGCTGCTCATGAAGTTG+AGG - Chr5:92991266-92991285 MsG0580029155.01.T01:three_prime_UTR 40.0%
ACACACCCTAAAGAAAGCAA+AGG + Chr5:92992934-92992953 None:intergenic 40.0%
ACAGCAGGAAGTTGAGATTT+GGG - Chr5:92994064-92994083 MsG0580029155.01.T01:intron 40.0%
ACCAAATGGTCCAGGAATTT+AGG - Chr5:92992817-92992836 MsG0580029155.01.T01:intron 40.0%
ACCTAAATTCCTGGACCATT+TGG + Chr5:92992821-92992840 None:intergenic 40.0%
ACGAGCAGAAGCAATATACA+TGG + Chr5:92994242-92994261 None:intergenic 40.0%
ACTTTGGATAGCCCGAATTA+CGG + Chr5:92990751-92990770 None:intergenic 40.0%
AGGTTGCGAGAAAATGTCAT+GGG + Chr5:92990821-92990840 None:intergenic 40.0%
ATATGACTATGCCACATCAG+AGG + Chr5:92990775-92990794 None:intergenic 40.0%
ATCCTGTATCATTTGCAGGT+TGG - Chr5:92992757-92992776 MsG0580029155.01.T01:intron 40.0%
ATGAACTATTGATGCTCTGG+CGG - Chr5:92992792-92992811 MsG0580029155.01.T01:intron 40.0%
ATGACAAGGATCCTAGCATT+TGG - Chr5:92990056-92990075 MsG0580029155.01.T01:intron 40.0%
ATGTATATTGCTTCTGCTCG+TGG - Chr5:92994241-92994260 MsG0580029155.01.T01:CDS 40.0%
ATTGAGGGTTAGGAGAAGAA+GGG + Chr5:92993073-92993092 None:intergenic 40.0%
CAAAACATGGTAAAGCCCTA+AGG + Chr5:92993818-92993837 None:intergenic 40.0%
CAAAGCTCCTCGAAGAAATT+TGG + Chr5:92993288-92993307 None:intergenic 40.0%
CACTTCTAATGAGAGACGAT+AGG + Chr5:92993630-92993649 None:intergenic 40.0%
CAGAATCAATGACGTGTAAG+AGG + Chr5:92992066-92992085 None:intergenic 40.0%
CATGAGCAGCAATTTCTGAT+TGG + Chr5:92991260-92991279 None:intergenic 40.0%
CCACTCCTTTCCTATATGTA+TGG - Chr5:92991551-92991570 MsG0580029155.01.T01:intron 40.0%
CCATACATATAGGAAAGGAG+TGG + Chr5:92991554-92991573 None:intergenic 40.0%
CTTCTTGGTTCCTCTTTGAA+AGG - Chr5:92989836-92989855 MsG0580029155.01.T01:three_prime_UTR 40.0%
GAAGCTTTCCATCAATGACA+AGG + Chr5:92992723-92992742 None:intergenic 40.0%
GCAAATGATACAGGATCTCA+TGG + Chr5:92992753-92992772 None:intergenic 40.0%
GCAATTAGGAGCTTATGCTA+CGG - Chr5:92990382-92990401 MsG0580029155.01.T01:intron 40.0%
GCTCATGAAGTTGAGGAAAT+AGG - Chr5:92991273-92991292 MsG0580029155.01.T01:three_prime_UTR 40.0%
GCTTTGCTCTGTAGATAGTT+TGG + Chr5:92991466-92991485 None:intergenic 40.0%
GTAGGAATTCCCAACTCTTT+AGG + Chr5:92990996-92991015 None:intergenic 40.0%
GTGTGCCATACATATAGGAA+AGG + Chr5:92991559-92991578 None:intergenic 40.0%
GTTGATACTTGGAGTTCGAA+GGG - Chr5:92994090-92994109 MsG0580029155.01.T01:intron 40.0%
GTTTGGTTGTAGGGTTTAGA+AGG - Chr5:92992952-92992971 MsG0580029155.01.T01:three_prime_UTR 40.0%
TACAGCAGGAAGTTGAGATT+TGG - Chr5:92994063-92994082 MsG0580029155.01.T01:intron 40.0%
TACATATAGGAAAGGAGTGG+GGG + Chr5:92991551-92991570 None:intergenic 40.0%
TACCTTGACCTTGTCATTGA+TGG - Chr5:92992712-92992731 MsG0580029155.01.T01:three_prime_UTR 40.0%
TAGGTTGCGAGAAAATGTCA+TGG + Chr5:92990822-92990841 None:intergenic 40.0%
TATTCTTCTTTCCCTTGTGC+AGG - Chr5:92992431-92992450 MsG0580029155.01.T01:intron 40.0%
TCTCATCACTAAACTGCCTT+GGG - Chr5:92992001-92992020 MsG0580029155.01.T01:intron 40.0%
TGAGATCCTGTATCATTTGC+AGG - Chr5:92992753-92992772 MsG0580029155.01.T01:three_prime_UTR 40.0%
TGTATATTGCTTCTGCTCGT+GGG - Chr5:92994242-92994261 MsG0580029155.01.T01:CDS 40.0%
TGTGTGAGAAGGGAAATGAA+TGG - Chr5:92993217-92993236 MsG0580029155.01.T01:intron 40.0%
TTAGGGTGTGTTTGGTTGTA+GGG - Chr5:92992943-92992962 MsG0580029155.01.T01:three_prime_UTR 40.0%
TTCAATAGAGGTGGGCATAT+TGG - Chr5:92991833-92991852 MsG0580029155.01.T01:intron 40.0%
TTCCATCAATGACAAGGTCA+AGG + Chr5:92992717-92992736 None:intergenic 40.0%
TTGGTTGTAGGGTTTAGAAG+GGG - Chr5:92992954-92992973 MsG0580029155.01.T01:three_prime_UTR 40.0%
TTTGTAGCCCTATTGTGTAG+CGG - Chr5:92990665-92990684 MsG0580029155.01.T01:intron 40.0%
! CTATGTTCCAAATCCCGTTT+TGG - Chr5:92990953-92990972 MsG0580029155.01.T01:intron 40.0%
! GATTTGATCAAGGCTTTTGC+AGG - Chr5:92993482-92993501 MsG0580029155.01.T01:intron 40.0%
! GCACTGACACTTCTGATTAA+AGG + Chr5:92989957-92989976 None:intergenic 40.0%
! GGTCAGTGTTGTTAAATAGC+AGG - Chr5:92990549-92990568 MsG0580029155.01.T01:intron 40.0%
! GTTAGTTTCGGCTTAAGCTT+GGG - Chr5:92993251-92993270 MsG0580029155.01.T01:intron 40.0%
! TGACATTTTCTCGCAACCTA+AGG - Chr5:92990822-92990841 MsG0580029155.01.T01:intron 40.0%
! TGTTAGTTTCGGCTTAAGCT+TGG - Chr5:92993250-92993269 MsG0580029155.01.T01:intron 40.0%
! TTACCTAGGTCGTAGGTTTT+AGG + Chr5:92991979-92991998 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGTTGT+AGG - Chr5:92992942-92992961 MsG0580029155.01.T01:intron 40.0%
!! AAACTTAGGGTGTTGGATTG+AGG + Chr5:92993089-92993108 None:intergenic 40.0%
!! AACTTAGGGTGTTGGATTGA+GGG + Chr5:92993088-92993107 None:intergenic 40.0%
!! CTGAAAGGTTTTGGTGAGAT+CGG - Chr5:92989570-92989589 MsG0580029155.01.T01:three_prime_UTR 40.0%
!! CTTACACGTCATTGATTCTG+AGG - Chr5:92992066-92992085 MsG0580029155.01.T01:intron 40.0%
!! TGCTTTCTTTAGGGTGTGTT+TGG - Chr5:92992935-92992954 MsG0580029155.01.T01:intron 40.0%
!! TTTGGCGATCAGCTATTTCT+GGG - Chr5:92992349-92992368 MsG0580029155.01.T01:intron 40.0%
!! TTTTGGCGATCAGCTATTTC+TGG - Chr5:92992348-92992367 MsG0580029155.01.T01:intron 40.0%
!! TTTTGTTGTCCTGCCTCTAA+TGG - Chr5:92992556-92992575 MsG0580029155.01.T01:intron 40.0%
AAATGTTCCACTCCTGCACA+AGG + Chr5:92992446-92992465 None:intergenic 45.0%
AACATGGTAAAGCCCTAAGG+AGG + Chr5:92993815-92993834 None:intergenic 45.0%
AATGTTCCACTCCTGCACAA+GGG + Chr5:92992445-92992464 None:intergenic 45.0%
ACTCCTAAAACCTACGACCT+AGG - Chr5:92991973-92991992 MsG0580029155.01.T01:intron 45.0%
AGCTTACTATGCTGTTGAGG+AGG - Chr5:92991019-92991038 MsG0580029155.01.T01:intron 45.0%
AGGGAACGCAATTGTCTGTT+AGG + Chr5:92991513-92991532 None:intergenic 45.0%
ATACCGAGTGTAGCTTGGTT+GGG - Chr5:92990454-92990473 MsG0580029155.01.T01:intron 45.0%
ATGCTGAGTCGGTGATTAGA+TGG - Chr5:92991939-92991958 MsG0580029155.01.T01:intron 45.0%
CAGGAAGTTGAGATTTGGGA+GGG - Chr5:92994068-92994087 MsG0580029155.01.T01:intron 45.0%
CCTACCACTTCAATAGAGGT+GGG - Chr5:92991825-92991844 MsG0580029155.01.T01:intron 45.0%
CTCTCATCACTAAACTGCCT+TGG - Chr5:92992000-92992019 MsG0580029155.01.T01:intron 45.0%
GATTGAGGGTTAGGAGAAGA+AGG + Chr5:92993074-92993093 None:intergenic 45.0%
GCCGTTTGAAGAAGATGACA+AGG - Chr5:92990042-92990061 MsG0580029155.01.T01:intron 45.0%
GGGAATGCCAAATTTCTTCG+AGG - Chr5:92993278-92993297 MsG0580029155.01.T01:intron 45.0%
GGTAAACGAGTGTGTGAGAA+GGG - Chr5:92993207-92993226 MsG0580029155.01.T01:intron 45.0%
GTGGGTTTGGCAAATTACTG+TGG - Chr5:92990479-92990498 MsG0580029155.01.T01:intron 45.0%
GTGGTGTGTGCCATACATAT+AGG + Chr5:92991564-92991583 None:intergenic 45.0%
GTTGAGGAGGTTAAAGAGGT+GGG - Chr5:92991032-92991051 MsG0580029155.01.T01:intron 45.0%
TATACCGAGTGTAGCTTGGT+TGG - Chr5:92990453-92990472 MsG0580029155.01.T01:intron 45.0%
TATGCCCACCTCTATTGAAG+TGG + Chr5:92991832-92991851 None:intergenic 45.0%
TCACAGAGAATATGCTTCCC+TGG - Chr5:92991487-92991506 MsG0580029155.01.T01:three_prime_UTR 45.0%
TCCTACCACTTCAATAGAGG+TGG - Chr5:92991824-92991843 MsG0580029155.01.T01:intron 45.0%
TCGCGGAAAGTGGAAAATAG+CGG + Chr5:92990703-92990722 None:intergenic 45.0%
TCTCAACTTCCTGCTGTACT+TGG + Chr5:92994061-92994080 None:intergenic 45.0%
TCTTGCATCCAAACCCTTCA+AGG + Chr5:92992674-92992693 None:intergenic 45.0%
TGACATTAAGATTGGGCAGC+AGG + Chr5:92993460-92993479 None:intergenic 45.0%
TGAGAGTTTACCTAGGTCGT+AGG + Chr5:92991986-92992005 None:intergenic 45.0%
TGCAAACTCACAGCCTTGAA+GGG - Chr5:92992658-92992677 MsG0580029155.01.T01:intron 45.0%
TGCCACTCAGAAGAGTCAAA+AGG - Chr5:92991221-92991240 MsG0580029155.01.T01:three_prime_UTR 45.0%
TGCCATTGCTCACCGTAATT+CGG - Chr5:92990736-92990755 MsG0580029155.01.T01:intron 45.0%
TGCTGAGTCGGTGATTAGAT+GGG - Chr5:92991940-92991959 MsG0580029155.01.T01:intron 45.0%
TGCTGTTGAGGAGGTTAAAG+AGG - Chr5:92991028-92991047 MsG0580029155.01.T01:intron 45.0%
TGTTAAACGGTTGTGAGCGA+CGG + Chr5:92994360-92994379 None:intergenic 45.0%
TGTTGAGGAGGTTAAAGAGG+TGG - Chr5:92991031-92991050 MsG0580029155.01.T01:intron 45.0%
TTGTAGGGTTTAGAAGGGGA+AGG - Chr5:92992958-92992977 MsG0580029155.01.T01:three_prime_UTR 45.0%
TTTGTGGGGTGGTATAGTAC+TGG - Chr5:92990252-92990271 MsG0580029155.01.T01:intron 45.0%
! GGTTGATACTTGGAGTTCGA+AGG - Chr5:92994089-92994108 MsG0580029155.01.T01:intron 45.0%
! TATCCAAAGTGCCTCTGATG+TGG - Chr5:92990761-92990780 MsG0580029155.01.T01:intron 45.0%
!! AAAAGGCACCTCTGTTGCAA+GGG + Chr5:92992501-92992520 None:intergenic 45.0%
!! AGCTAGCAAGTTGGTTAGAG+GGG - Chr5:92993155-92993174 MsG0580029155.01.T01:intron 45.0%
!! GACCTTTTGACTCTTCTGAG+TGG + Chr5:92991226-92991245 None:intergenic 45.0%
!! GAGCTAGCAAGTTGGTTAGA+GGG - Chr5:92993154-92993173 MsG0580029155.01.T01:intron 45.0%
!! GAGCTTTGTTCTGGGGTTAT+TGG - Chr5:92993300-92993319 MsG0580029155.01.T01:intron 45.0%
!! GATTTGGGAGGGTTGATACT+TGG - Chr5:92994079-92994098 MsG0580029155.01.T01:intron 45.0%
!! GTAGCTGTTGGTGATATCGA+CGG + Chr5:92989864-92989883 None:intergenic 45.0%
!! GTGTAATGGGCAAATAGTGG+AGG + Chr5:92992304-92992323 None:intergenic 45.0%
!! TAGCGTATCGACTTTCGTTG+CGG + Chr5:92991797-92991816 None:intergenic 45.0%
!! TCTTCGAGGAGCTTTGTTCT+GGG - Chr5:92993292-92993311 MsG0580029155.01.T01:intron 45.0%
!! TGAGCTAGCAAGTTGGTTAG+AGG - Chr5:92993153-92993172 MsG0580029155.01.T01:intron 45.0%
!! TTAGCAAGGAGGGCATTTGT+GGG - Chr5:92990237-92990256 MsG0580029155.01.T01:intron 45.0%
!! TTCTTCGAGGAGCTTTGTTC+TGG - Chr5:92993291-92993310 MsG0580029155.01.T01:intron 45.0%
!! TTTAGCAAGGAGGGCATTTG+TGG - Chr5:92990236-92990255 MsG0580029155.01.T01:intron 45.0%
ACGCAATTGTCTGTTAGGCC+AGG + Chr5:92991508-92991527 None:intergenic 50.0%
ACTCACAGCCTTGAAGGGTT+TGG - Chr5:92992663-92992682 MsG0580029155.01.T01:intron 50.0%
ACTGTGTCAATCGCGGAAAG+TGG + Chr5:92990713-92990732 None:intergenic 50.0%
AGACAATTGCGTTCCCTTCC+TGG - Chr5:92991516-92991535 MsG0580029155.01.T01:three_prime_UTR 50.0%
AGGGTTAGGAGAAGAAGGGA+GGG + Chr5:92993069-92993088 None:intergenic 50.0%
ATCGACGGTGCCTTTCAAAG+AGG + Chr5:92989849-92989868 None:intergenic 50.0%
ATGCTCTGGCGGTTACCAAA+TGG - Chr5:92992803-92992822 MsG0580029155.01.T01:intron 50.0%
CATTAGCACCCTTGCAACAG+AGG - Chr5:92992490-92992509 MsG0580029155.01.T01:intron 50.0%
CCCACCTCTATTGAAGTGGT+AGG + Chr5:92991828-92991847 None:intergenic 50.0%
CGCAATTGTCTGTTAGGCCA+GGG + Chr5:92991507-92991526 None:intergenic 50.0%
CTCCAGAAAGAATGGTGAGG+TGG + Chr5:92991609-92991628 None:intergenic 50.0%
CTTCCTGCTGTACTTGGTAC+AGG + Chr5:92994055-92994074 None:intergenic 50.0%
GAGAGGAGCTCCAGAAAGAA+TGG + Chr5:92991617-92991636 None:intergenic 50.0%
GAGCTCCAGAAAGAATGGTG+AGG + Chr5:92991612-92991631 None:intergenic 50.0%
GATATCACCAACAGCTACGC+CGG - Chr5:92989866-92989885 MsG0580029155.01.T01:three_prime_UTR 50.0%
GCAGGAAGTTGAGATTTGGG+AGG - Chr5:92994067-92994086 MsG0580029155.01.T01:intron 50.0%
GCCATTGCTCACCGTAATTC+GGG - Chr5:92990737-92990756 MsG0580029155.01.T01:intron 50.0%
GCTGAGTCGGTGATTAGATG+GGG - Chr5:92991941-92991960 MsG0580029155.01.T01:intron 50.0%
GGGTAAACGAGTGTGTGAGA+AGG - Chr5:92993206-92993225 MsG0580029155.01.T01:intron 50.0%
GGTTTAGAAGGGGAAGGAGA+GGG - Chr5:92992964-92992983 MsG0580029155.01.T01:three_prime_UTR 50.0%
GTGACCAGAAGGTTGTCAGT+TGG + Chr5:92994150-92994169 None:intergenic 50.0%
GTGCAAACTCACAGCCTTGA+AGG - Chr5:92992657-92992676 MsG0580029155.01.T01:intron 50.0%
GTTTAGAAGGGGAAGGAGAG+GGG - Chr5:92992965-92992984 MsG0580029155.01.T01:three_prime_UTR 50.0%
TGCCACCTCACCATTCTTTC+TGG - Chr5:92991604-92991623 MsG0580029155.01.T01:intron 50.0%
TTCTTTCCCTTGTGCAGGAG+TGG - Chr5:92992436-92992455 MsG0580029155.01.T01:intron 50.0%
TTTAGAAGGGGAAGGAGAGG+GGG - Chr5:92992966-92992985 MsG0580029155.01.T01:three_prime_UTR 50.0%
! AATTGTACCGGCGTAGCTGT+TGG + Chr5:92989876-92989895 None:intergenic 50.0%
! TATGGAGATTGGAGTGCCCA+AGG + Chr5:92992020-92992039 None:intergenic 50.0%
!! AGGGTGTTGGATTGAGGGTT+AGG + Chr5:92993083-92993102 None:intergenic 50.0%
!! ATGCCACATCAGAGGCACTT+TGG + Chr5:92990767-92990786 None:intergenic 50.0%
!! CAAAAGGCACCTCTGTTGCA+AGG + Chr5:92992502-92992521 None:intergenic 50.0%
!! CTCTGTTGCAAGGGTGCTAA+TGG + Chr5:92992492-92992511 None:intergenic 50.0%
!! CTTCGAGGAGCTTTGTTCTG+GGG - Chr5:92993293-92993312 MsG0580029155.01.T01:intron 50.0%
!! GCTAGCAAGTTGGTTAGAGG+GGG - Chr5:92993156-92993175 MsG0580029155.01.T01:intron 50.0%
!! TAGCAAGGAGGGCATTTGTG+GGG - Chr5:92990238-92990257 MsG0580029155.01.T01:intron 50.0%
AAACGGTTGTGAGCGACGGT+AGG + Chr5:92994356-92994375 None:intergenic 55.0%
AGTGTAGCTTGGTTGGGTGG+TGG - Chr5:92990460-92990479 MsG0580029155.01.T01:intron 55.0%
CCACCCAACCAAGCTACACT+CGG + Chr5:92990460-92990479 None:intergenic 55.0%
CGCGTCGTTGGAGTTCTTCT+TGG - Chr5:92989821-92989840 MsG0580029155.01.T01:three_prime_UTR 55.0%
GAAAGGAGTGGGGGAGTTAG+TGG + Chr5:92991542-92991561 None:intergenic 55.0%
GACGCGTTTGCGAGTGTCTT+TGG + Chr5:92989807-92989826 None:intergenic 55.0%
GAGGGTTAGGAGAAGAAGGG+AGG + Chr5:92993070-92993089 None:intergenic 55.0%
GCCCGAATTACGGTGAGCAA+TGG + Chr5:92990741-92990760 None:intergenic 55.0%
GGAGCCAACTGACAACCTTC+TGG - Chr5:92994143-92994162 MsG0580029155.01.T01:CDS 55.0%
GGCACTCACTGTGTCAATCG+CGG + Chr5:92990720-92990739 None:intergenic 55.0%
GGGTTAGGAGAAGAAGGGAG+GGG + Chr5:92993068-92993087 None:intergenic 55.0%
GGGTTTAGAAGGGGAAGGAG+AGG - Chr5:92992963-92992982 MsG0580029155.01.T01:three_prime_UTR 55.0%
GGTGGGCATATTGGCGATAG+CGG - Chr5:92991842-92991861 MsG0580029155.01.T01:intron 55.0%
GTCAGGGTGAGCTAGCAAGT+TGG - Chr5:92993146-92993165 MsG0580029155.01.T01:intron 55.0%
GTGCCTGTACCAAGTACAGC+AGG - Chr5:92994049-92994068 MsG0580029155.01.T01:intron 55.0%
GTGTAGCTTGGTTGGGTGGT+GGG - Chr5:92990461-92990480 MsG0580029155.01.T01:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG + Chr5:92993064-92993083 None:intergenic 55.0%
TCGGCTTAAGCTTGGGCAGA+GGG - Chr5:92993258-92993277 MsG0580029155.01.T01:intron 55.0%
TGGCGGTTACCAAATGGTCC+AGG - Chr5:92992809-92992828 MsG0580029155.01.T01:intron 55.0%
TGGTTAGAGGGGGAGAGAGA+GGG - Chr5:92993166-92993185 MsG0580029155.01.T01:intron 55.0%
TTAGAAGGGGAAGGAGAGGG+GGG - Chr5:92992967-92992986 MsG0580029155.01.T01:three_prime_UTR 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG + Chr5:92993065-92993084 None:intergenic 55.0%
TTCGGCTTAAGCTTGGGCAG+AGG - Chr5:92993257-92993276 MsG0580029155.01.T01:intron 55.0%
TTGGTTAGAGGGGGAGAGAG+AGG - Chr5:92993165-92993184 MsG0580029155.01.T01:intron 55.0%
! ACATTGTGATGGAAGCCGCC+AGG + Chr5:92994320-92994339 None:intergenic 55.0%
AGAGAGGGAACGCGTGGAGT+CGG - Chr5:92993181-92993200 MsG0580029155.01.T01:intron 60.0%
CCGAGTGTAGCTTGGTTGGG+TGG - Chr5:92990457-92990476 MsG0580029155.01.T01:intron 60.0%
GACACTCGCAAACGCGTCGT+TGG - Chr5:92989809-92989828 MsG0580029155.01.T01:three_prime_UTR 60.0%
GGGGAGTTAGTGGCCAGGAA+GGG + Chr5:92991532-92991551 None:intergenic 60.0%
TAGAAGGGGAAGGAGAGGGG+GGG - Chr5:92992968-92992987 MsG0580029155.01.T01:three_prime_UTR 60.0%
!! CAAGGAGGGCATTTGTGGGG+TGG - Chr5:92990241-92990260 MsG0580029155.01.T01:intron 60.0%
!! GCTTGGTTGGGTGGTGGGTT+TGG - Chr5:92990466-92990485 MsG0580029155.01.T01:intron 60.0%
AGAAGGGGAAGGAGAGGGGG+GGG - Chr5:92992969-92992988 MsG0580029155.01.T01:three_prime_UTR 65.0%
AGGAGAGGGGGGGGTTGCTT+TGG - Chr5:92992978-92992997 MsG0580029155.01.T01:three_prime_UTR 65.0%
GAGAGGGAACGCGTGGAGTC+GGG - Chr5:92993182-92993201 MsG0580029155.01.T01:intron 65.0%
GAGTGGGGGAGTTAGTGGCC+AGG + Chr5:92991537-92991556 None:intergenic 65.0%
GGGGGAGTTAGTGGCCAGGA+AGG + Chr5:92991533-92991552 None:intergenic 65.0%
! GGAGAGGGGGGGGTTGCTTT+GGG - Chr5:92992979-92992998 MsG0580029155.01.T01:three_prime_UTR 65.0%
AGGGAACGCGTGGAGTCGGG+AGG - Chr5:92993185-92993204 MsG0580029155.01.T01:intron 70.0%
GGGAACGCGTGGAGTCGGGA+GGG - Chr5:92993186-92993205 MsG0580029155.01.T01:intron 70.0%
GGGGAGAGAGAGGGAACGCG+TGG - Chr5:92993175-92993194 MsG0580029155.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 92989563 92994429 92989563 ID=MsG0580029155.01;Name=MsG0580029155.01
Chr5 mRNA 92989563 92994429 92989563 ID=MsG0580029155.01.T01;Parent=MsG0580029155.01;Name=MsG0580029155.01.T01;_AED=0.49;_eAED=0.49;_QI=138|1|1|1|0.4|0.45|11|887|119
Chr5 exon 92989563 92989629 92989563 ID=MsG0580029155.01.T01:exon:49596;Parent=MsG0580029155.01.T01
Chr5 exon 92989663 92989985 92989663 ID=MsG0580029155.01.T01:exon:49595;Parent=MsG0580029155.01.T01
Chr5 exon 92990311 92990395 92990311 ID=MsG0580029155.01.T01:exon:49594;Parent=MsG0580029155.01.T01
Chr5 exon 92991481 92991539 92991481 ID=MsG0580029155.01.T01:exon:49591;Parent=MsG0580029155.01.T01
Chr5 exon 92992943 92993039 92992943 ID=MsG0580029155.01.T01:exon:49589;Parent=MsG0580029155.01.T01
Chr5 exon 92993672 92993751 92993672 ID=MsG0580029155.01.T01:exon:49588;Parent=MsG0580029155.01.T01
Chr5 exon 92993859 92993951 92993859 ID=MsG0580029155.01.T01:exon:49587;Parent=MsG0580029155.01.T01
Chr5 exon 92994105 92994429 92994105 ID=MsG0580029155.01.T01:exon:49586;Parent=MsG0580029155.01.T01
Chr5 five_prime_UTR 92994292 92994429 92994292 ID=MsG0580029155.01.T01:five_prime_utr;Parent=MsG0580029155.01.T01
Chr5 CDS 92994105 92994291 92994105 ID=MsG0580029155.01.T01:cds;Parent=MsG0580029155.01.T01
Chr5 CDS 92993859 92993951 92993859 ID=MsG0580029155.01.T01:cds;Parent=MsG0580029155.01.T01
Chr5 CDS 92993672 92993751 92993672 ID=MsG0580029155.01.T01:cds;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92992943 92993039 92992943 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92992698 92992773 92992698 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92991481 92991539 92991481 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92991218 92991339 92991218 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92990489 92990546 92990489 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92990311 92990395 92990311 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92989663 92989985 92989663 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 three_prime_UTR 92989563 92989629 92989563 ID=MsG0580029155.01.T01:three_prime_utr;Parent=MsG0580029155.01.T01
Chr5 mRNA 92989914 92993053 92989914 ID=MsG0580029155.01.T02;Parent=MsG0580029155.01;Name=MsG0580029155.01.T02;_AED=0.49;_eAED=0.60;_QI=0|0.6|0.5|1|0.6|0.66|6|0|204
Chr5 exon 92992943 92993053 92992943 ID=MsG0580029155.01.T02:exon:49599;Parent=MsG0580029155.01.T02
Chr5 exon 92991438 92991539 92991438 ID=MsG0580029155.01.T02:exon:49598;Parent=MsG0580029155.01.T02
Chr5 exon 92989914 92990059 92989914 ID=MsG0580029155.01.T02:exon:49597;Parent=MsG0580029155.01.T02
Chr5 CDS 92992943 92993053 92992943 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Chr5 CDS 92992698 92992773 92992698 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Chr5 CDS 92991438 92991539 92991438 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Chr5 CDS 92991218 92991339 92991218 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Chr5 CDS 92990489 92990546 92990489 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Chr5 CDS 92989914 92990059 92989914 ID=MsG0580029155.01.T02:cds;Parent=MsG0580029155.01.T02
Gene Sequence

>MsG0580029155.01.T02

ATGGATTGTTGCAGCTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAAGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAGGAGGTTAAAGAGAATGCCACTCAGAAGAGTCAAAAGGTCTTTGTGCATGTCCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTGCCTTTTGCTCACTTTTGTTATACATTGATTCCTTTCATTGGTAAGTGCAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATTTGCAGGACGTATTCAACCTGCTGCCCAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGAAAGCTTGTCAAGTGAAACATTTGAAATGATTAATGTGATTTTATGTTTCTTAACATCTGAATTATCATTTCAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAATCAGTGCCTGTACCAAGTACAGCAGGAAGTTGA

>MsG0580029155.01.T01

ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCAATTGAAAAAGTTGTAGTTCATCCTTTAGTTTTACTCAGCATAGTTGATAACTACAATAGAGTCGCCAAAGACACTCGCAAACGCGTCGTTGGAGTTCTTCTTGGTTCCTCTTTGAAAGGCACCGTCGATATCACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTTGATCATAATTATCATGAATCAATGTTCTCTATGTTCAAGAGAATCAATGCAAGGAGGGCATTTGTGGGGTGGTATAGTACTGGACCGAAACTGCGAGAAATGATCTTGATATCATGCTTTATTCAATGA

Protein sequence

>MsG0580029155.01.T02

MDCCSYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVPFAHFCYTLIPFIGKCKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAESLSSETFEMINVILCFLTSELSFQMLNKEHEREEDSKSVPVPSTAGS*

>MsG0580029155.01.T01

MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSLKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINARRAFVGWYSTGPKLREMILISCFIQ*