AlfalfaGEDB | MsG0680030401.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030401.01

KEGG: K12823
GO: GO:0003676 GO:0005515 GO:0005524
PFAM: PF00270 PF00271 PF00397

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030401.01.T01	XP_003618185.1	96.797	718	10	1	1	705	1	718	0	1410

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030401.01.T01	Q9LYJ9	71.735	559	138	5	1	545	1	553	0	810

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048202.01	MsG0680030401.01	0.806177	9.335734e-50	5.033771e-47
MsG0580025864.01	MsG0680030401.01	0.813161	2.944710e-51	1.908413e-48

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PPI

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Gene1	Gene2	Type
MsG0180001046.01	MsG0680030401.01	PPI
MsG0180001047.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180001883.01	MsG0680030401.01	PPI
MsG0180003735.01	MsG0680030401.01	PPI
MsG0280008086.01	MsG0680030401.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030401.01.T01	MTR_6g005550	96.797	718	10	1	1	705	1	718	0.0	1410
MsG0680030401.01.T01	MTR_2g032630	72.927	410	98	1	144	540	475	884	0.0	639
MsG0680030401.01.T01	MTR_2g032630	69.492	59	18	0	6	64	4	62	8.50e-20	95.1
MsG0680030401.01.T01	MTR_4g105100	56.049	405	162	4	146	535	183	586	6.45e-148	445
MsG0680030401.01.T01	MTR_2g100230	54.684	395	163	4	146	525	77	470	3.96e-146	436
MsG0680030401.01.T01	MTR_4g105100	54.103	329	135	4	146	459	183	510	1.60e-110	345
MsG0680030401.01.T01	MTR_1g054630	43.427	426	204	8	152	545	141	561	4.42e-104	330
MsG0680030401.01.T01	MTR_4g114120	41.064	470	229	10	118	550	100	558	9.74e-101	323
MsG0680030401.01.T01	MTR_3g083690	44.524	420	192	11	152	535	132	546	7.34e-100	320
MsG0680030401.01.T01	MTR_7g109720	42.857	406	211	7	146	533	213	615	8.42e-100	324

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030401.01.T01	AT5G14610	71.735	559	138	5	1	545	1	553	0.0	810
MsG0680030401.01.T01	AT5G14610	71.735	559	138	5	1	545	1	553	0.0	810
MsG0680030401.01.T01	AT5G14610	71.735	559	138	5	1	545	9	561	0.0	809
MsG0680030401.01.T01	AT3G01540	71.223	556	131	9	1	538	1	545	0.0	781
MsG0680030401.01.T01	AT3G01540	71.223	556	131	9	1	538	1	545	0.0	781
MsG0680030401.01.T01	AT3G01540	71.223	556	131	9	1	538	1	545	0.0	781
MsG0680030401.01.T01	AT3G01540	71.223	556	131	9	1	538	1	545	0.0	781
MsG0680030401.01.T01	AT5G14610	68.763	493	136	4	1	479	9	497	0.0	678
MsG0680030401.01.T01	AT5G14610	82.275	378	65	1	168	545	246	621	0.0	652
MsG0680030401.01.T01	AT5G14610	51.064	188	86	4	1	186	1	184	2.93e-45	173

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Find 266 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTGGGGAGGATCTTC+AGG	0.295472	6:-1720296	MsG0680030401.01.T01:CDS
AAATATCGTACTGGTGGTCG+TGG	0.563897	6:-1720851	MsG0680030401.01.T01:CDS
AAATTAGGAAGATTGTGAAT+GGG	0.508102	6:-1721816	MsG0680030401.01.T01:CDS
AACAGGTTCAGGGAAAACCT+TGG	0.548525	6:-1722426	MsG0680030401.01.T01:CDS
AACCTCCTTAGGCCATGTTG+CGG	0.658904	6:+1721762	None:intergenic
AACTTCGCGAGTTGTCATCC+AGG	0.497161	6:-1720898	MsG0680030401.01.T01:CDS
AAGAGTTATGACTCTGGGTA+TGG	0.561068	6:-1720809	MsG0680030401.01.T01:CDS
AAGCCTGATAATGATGAAAT+AGG	0.362930	6:-1720048	MsG0680030401.01.T01:three_prime_UTR
AAGGGTAATGATGGAGGATA+TGG	0.377958	6:-1720782	MsG0680030401.01.T01:CDS
AATCATCTCAAGGGAGTTGC+CGG	0.400076	6:-1724021	MsG0680030401.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATATAACGCGAGTTG+AGG	+	Chr6:1721684-1721703	None:intergenic	30.0%
AACTAAGATATTAGAGCTTC+AGG	+	Chr6:1722683-1722702	None:intergenic	30.0%
AAGAACATTTCCAAATGTCA+TGG	+	Chr6:1724491-1724510	None:intergenic	30.0%
AATTAGGAAGATTGTGAATG+GGG	-	Chr6:1723783-1723802	MsG0680030401.01.T01:intron	30.0%
AGGGATAGTACATATTTATC+AGG	+	Chr6:1722407-1722426	None:intergenic	30.0%
ATAAAAAATGACATCGTAGG+GGG	+	Chr6:1724019-1724038	None:intergenic	30.0%
CAAATTAGGAAGATTGTGAA+TGG	-	Chr6:1723781-1723800	MsG0680030401.01.T01:intron	30.0%
CAATTAAAAGATATTGACCG+CGG	-	Chr6:1723628-1723647	MsG0680030401.01.T01:intron	30.0%
CATTACACCAAATATATCAG+TGG	+	Chr6:1723964-1723983	None:intergenic	30.0%
CATTACATTTGCTTAGGTAA+TGG	-	Chr6:1721956-1721975	MsG0680030401.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	1719749	1725871	1719749	ID=MsG0680030401.01;Name=MsG0680030401.01
Chr6	mRNA	1719749	1725871	1719749	ID=MsG0680030401.01.T01;Parent=MsG0680030401.01;Name=MsG0680030401.01.T01;_AED=0.48;_eAED=0.48;_QI=154\|0.87\|0.88\|1\|0.87\|0.77\|9\|474\|705
Chr6	exon	1719749	1720529	1719749	ID=MsG0680030401.01.T01:exon:2721;Parent=MsG0680030401.01.T01
Chr6	exon	1720680	1721096	1720680	ID=MsG0680030401.01.T01:exon:2720;Parent=MsG0680030401.01.T01
Chr6	exon	1721233	1721510	1721233	ID=MsG0680030401.01.T01:exon:2719;Parent=MsG0680030401.01.T01
Chr6	exon	1721672	1722022	1721672	ID=MsG0680030401.01.T01:exon:2718;Parent=MsG0680030401.01.T01
Chr6	exon	1722271	1722501	1722271	ID=MsG0680030401.01.T01:exon:2717;Parent=MsG0680030401.01.T01
Chr6	exon	1723060	1723128	1723060	ID=MsG0680030401.01.T01:exon:2716;Parent=MsG0680030401.01.T01
Chr6	exon	1723291	1723446	1723291	ID=MsG0680030401.01.T01:exon:2715;Parent=MsG0680030401.01.T01
Chr6	exon	1723946	1724278	1723946	ID=MsG0680030401.01.T01:exon:2714;Parent=MsG0680030401.01.T01
Chr6	exon	1725742	1725871	1725742	ID=MsG0680030401.01.T01:exon:2713;Parent=MsG0680030401.01.T01
Chr6	five_prime_UTR	1725742	1725871	1725742	ID=MsG0680030401.01.T01:five_prime_utr;Parent=MsG0680030401.01.T01
Chr6	five_prime_UTR	1724255	1724278	1724255	ID=MsG0680030401.01.T01:five_prime_utr;Parent=MsG0680030401.01.T01
Chr6	CDS	1723946	1724254	1723946	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1723291	1723446	1723291	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1723060	1723128	1723060	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1722271	1722501	1722271	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1721672	1722022	1721672	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1721233	1721510	1721233	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1720680	1721096	1720680	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	CDS	1720223	1720529	1720223	ID=MsG0680030401.01.T01:cds;Parent=MsG0680030401.01.T01
Chr6	three_prime_UTR	1719749	1720222	1719749	ID=MsG0680030401.01.T01:three_prime_utr;Parent=MsG0680030401.01.T01

Gene Sequence

>MsG0680030401.01.T01

ATGGCTGCTACAGCAACTGCCGCAGCGGGTCCACGGTATGCCCCAGCAGATCCTACACTTCCTAAACCATGGAAGGGTCTTGTGGATGGGAAGACTGGTTATCTTTACTTTTGGAATCCTGAGACTAATGTCACTCAGTATGAGAGGCCTTCAAGCTCAGCTGCTCCACCGAAAACTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAGCAATCATCTCAAGGGAGTTGCCGGAGTCCTGATTTCAGTGATCGGTATGATAGGAATGGAAATGGTGGGTCAAATGAAGGTGGATTCCGGAACCATCAGAGTTCCAAAGGTGACAGTTTTAGTTCTCATAATAATGTTGCAAATGGAACACCTGCTGCTGGAAATGGTAGTTCTATCAAAAGTCAAGTACCATTGGAGACCGGACCTGCATTATCTCCAGATGCTTATAGACGGCGTCATGAGATCACTGTTACTGGAGATAATGTGCCTCCACCTGTTACATCATTTGCGTCTTCTGGTTTTCCATCTGAGATTCTTAGAGAGGCACAATCATGGCCCATTGCACTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCCTTTATTCACCTTAAGCGTACTAATAATAACGCTAAAATGGGCCCCACTGTGTTGGTACTTTCACCAACAAGGGAGTTGGCAACACAAATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACTTGTTTGTATGGAGGAGCACCGAAGGGTCCTCAATTAAAAGATATTGACCGCGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCACCAGGTCTCTTACCTAGTTCTGGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGGGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACCGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTGGTTGCTAACAAGTCTATTACTCAGCATATTGAAGTTTTGACGTATGTGGAGAAACAGCGACGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGGTCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGCGGAAGGACTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGACGTCAAAGACATTAGAGTGGTTGTCAACTTCGACTTCCCTACTGGTGTTGAGGATTATGTTCATAGGATTGGTAGGACTGGGAGGGCTGGCGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCTGATCTCATCAAAATCTTAGAGGGTGCAAACCAGCGAGTTCCTCCAGAACTTCGCGAGTTGTCATCCAGGGGTGGTGGTGGCTTTAGCAGATCCAAATATCGTACTGGTGGTCGTGGTGACTCTGGATTCGGTGCTAAGAGTTATGACTCTGGGTATGGTGGAAAGGGTAATGATGGAGGATATGGCGGAAGAGGTGGTGATTCAAGTTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGCCGAGGTGGAGGCCGTGGATTTGACAATGACTCACAGAGGAATGATCGTGATCGAAGCCCTGACAGAGGATCTAGCTGGAGTGATCGCTTTAAAACTATCAATCGTGAACGCAGTCGTAGTCCTGTCAAGGGTGCACCATCTCAAAATGCCCCGGTCAGCTTTCACCAAGCAATGATGCAACGCAGTGGAGGTGGTAGTGATCGCAACAAGAGCTTTAGCCGGGAGCGAAGCCACAGTCGTAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAATGGTGGCTCTCATTCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGATTGA

Protein sequence

>MsG0680030401.01.T01

MAATATAAAGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKTSSVPSSSVQVQQSSQGSCRSPDFSDRYDRNGNGGSNEGGFRNHQSSKGDSFSSHNNVANGTPAAGNGSSIKSQVPLETGPALSPDAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQRVPPELRELSSRGGGGFSRSKYRTGGRGDSGFGAKSYDSGYGGKGNDGGYGGRGGDSSYGGRGGYGSSAAFGRGGGRGFDNDSQRNDRDRSPDRGSSWSDRFKTINRERSRSPVKGAPSQNAPVSFHQAMMQRSGGGSDRNKSFSRERSHSRSPQKGWGGSSGDGRNGGSHSYNGELEEGMIPDED*