AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038848.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038848.01.T01 MTR_7g063390 92.105 266 21 0 1 266 1 266 0.0 511
MsG0780038848.01.T01 MTR_7g063360 86.842 266 35 0 1 266 1 266 6.25e-175 483
MsG0780038848.01.T01 MTR_7g063260 79.245 265 55 0 1 265 1 265 3.12e-157 438
MsG0780038848.01.T01 MTR_7g063270 76.226 265 62 1 1 265 1 264 7.12e-153 427
MsG0780038848.01.T01 MTR_7g063330 75.094 265 64 2 1 265 1 263 7.21e-148 414
MsG0780038848.01.T01 MTR_7g063320 74.812 266 66 1 1 266 1 265 6.16e-144 404
MsG0780038848.01.T01 MTR_7g063270 61.509 265 52 3 1 265 1 215 1.00e-110 318
MsG0780038848.01.T01 MTR_3g068070 59.470 264 103 1 3 266 2 261 2.39e-108 314
MsG0780038848.01.T01 MTR_4g064883 58.203 256 103 1 11 266 9 260 1.08e-106 310
MsG0780038848.01.T01 MTR_3g068155 57.692 260 106 1 7 266 10 265 5.59e-104 303
MsG0780038848.01.T01 MTR_3g068175 56.604 265 111 1 2 266 3 263 7.12e-102 298
MsG0780038848.01.T01 MTR_3g068085 59.363 251 98 1 16 266 15 261 1.68e-101 297
MsG0780038848.01.T01 MTR_4g064887 54.887 266 115 2 1 266 1 261 2.69e-101 296
MsG0780038848.01.T01 MTR_3g068175 55.762 269 111 2 2 266 3 267 1.36e-99 292
MsG0780038848.01.T01 MTR_3g068065 57.600 250 102 1 16 265 17 262 1.16e-95 282
MsG0780038848.01.T01 MTR_4g064883 60.500 200 79 0 11 210 9 208 9.24e-86 255
MsG0780038848.01.T01 MTR_4g064887 56.585 205 88 1 1 205 1 204 7.77e-80 240
MsG0780038848.01.T01 MTR_7g094510 33.333 255 158 7 16 264 6 254 1.39e-26 104
MsG0780038848.01.T01 MTR_7g094520 31.939 263 159 6 12 264 7 259 1.23e-25 102
MsG0780038848.01.T01 MTR_4g132850 31.765 255 155 6 16 264 7 248 2.66e-25 100
MsG0780038848.01.T01 MTR_3g085740 29.482 251 160 6 22 266 81 320 2.79e-22 94.4
MsG0780038848.01.T01 MTR_8g442750 28.016 257 172 4 16 264 14 265 2.56e-21 91.3
MsG0780038848.01.T01 MTR_4g131740 28.846 260 169 6 16 266 40 292 7.72e-21 89.7
MsG0780038848.01.T01 MTR_7g080410 31.183 186 122 4 23 203 45 229 1.10e-20 89.4
MsG0780038848.01.T01 MTR_7g080410 31.183 186 122 4 23 203 45 229 1.96e-20 89.0
MsG0780038848.01.T01 MTR_1g068955 31.008 258 157 6 16 262 14 261 9.70e-20 86.7
MsG0780038848.01.T01 MTR_4g052350 29.572 257 164 8 16 266 14 259 2.52e-19 85.1
MsG0780038848.01.T01 MTR_4g058810 29.344 259 170 9 16 266 11 264 2.30e-18 82.8
MsG0780038848.01.T01 MTR_4g058840 30.038 263 163 9 16 266 11 264 6.28e-18 81.6
MsG0780038848.01.T01 MTR_4g058820 30.038 263 163 9 16 266 11 264 6.28e-18 81.6
MsG0780038848.01.T01 MTR_1g082760 26.538 260 174 7 16 266 40 291 8.85e-18 81.3
MsG0780038848.01.T01 MTR_7g113650 27.099 262 170 7 16 266 40 291 4.02e-17 79.7
MsG0780038848.01.T01 MTR_1196s0010 30.522 249 154 8 21 264 279 513 2.53e-16 78.6
MsG0780038848.01.T01 MTR_4g052300 27.559 254 173 6 16 266 8 253 3.14e-16 76.6
MsG0780038848.01.T01 MTR_7g083870 31.034 261 161 9 16 265 35 287 5.84e-16 76.3
MsG0780038848.01.T01 MTR_8g044240 30.049 203 126 7 16 206 69 267 1.61e-15 75.5
MsG0780038848.01.T01 MTR_6g023990 28.044 271 179 8 1 264 1 262 1.91e-15 74.3
MsG0780038848.01.T01 MTR_4g052320 27.953 254 173 5 16 266 8 254 2.15e-15 74.3
MsG0780038848.01.T01 MTR_4g052340 27.165 254 174 6 16 266 14 259 4.69e-15 73.6
MsG0780038848.01.T01 MTR_7g071680 29.151 271 166 8 16 265 29 294 5.89e-15 73.6
MsG0780038848.01.T01 MTR_6g023610 27.037 270 182 8 1 264 1 261 1.64e-14 72.0
MsG0780038848.01.T01 MTR_7g105460 27.237 257 173 7 16 266 13 261 2.08e-13 68.9
MsG0780038848.01.T01 MTR_4g078630 27.481 262 169 7 16 265 19 271 2.59e-13 68.6
MsG0780038848.01.T01 MTR_4g058830 31.210 157 102 5 113 266 57 210 2.22e-12 65.1
MsG0780038848.01.T01 MTR_1g051165 24.809 262 183 7 16 266 14 272 3.46e-12 65.5
MsG0780038848.01.T01 MTR_7g110160 30.502 259 150 7 13 266 3 236 6.06e-12 64.3
MsG0780038848.01.T01 MTR_6g023950 27.559 254 174 7 16 264 13 261 6.69e-12 64.3
MsG0780038848.01.T01 MTR_1579s0020 33.333 84 51 1 182 265 1 79 1.49e-11 59.7
MsG0780038848.01.T01 MTR_3g098470 33.784 148 95 3 12 158 28 173 2.82e-11 63.2
MsG0780038848.01.T01 MTR_3g020670 29.502 261 167 8 16 265 16 270 5.97e-11 62.0
MsG0780038848.01.T01 MTR_7g105580 26.772 254 158 9 16 265 8 237 7.75e-11 61.2
MsG0780038848.01.T01 MTR_1g031180 34.228 149 93 4 12 158 33 178 8.99e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038848.01.T01 AT5G06060 58.984 256 101 1 11 266 4 255 3.93e-111 321
MsG0780038848.01.T01 AT1G07440 55.642 257 109 1 10 266 6 257 3.76e-103 301
MsG0780038848.01.T01 AT2G29290 55.078 256 111 1 11 266 2 253 5.23e-100 293
MsG0780038848.01.T01 AT2G29360 54.887 266 116 1 1 266 1 262 7.00e-100 293
MsG0780038848.01.T01 AT2G29260 54.902 255 111 1 12 266 64 314 1.47e-99 294
MsG0780038848.01.T01 AT2G29340 54.297 256 113 2 11 266 2 253 1.23e-98 289
MsG0780038848.01.T01 AT2G29340 54.297 256 113 2 11 266 2 253 3.97e-98 290
MsG0780038848.01.T01 AT2G29330 55.078 256 111 2 11 266 2 253 3.32e-97 286
MsG0780038848.01.T01 AT2G29300 54.264 258 111 3 11 266 2 254 5.74e-97 285
MsG0780038848.01.T01 AT2G29150 54.511 266 116 3 1 266 1 261 6.01e-97 285
MsG0780038848.01.T01 AT2G29320 55.212 259 108 4 11 266 7 260 7.82e-97 285
MsG0780038848.01.T01 AT2G30670 53.906 256 114 2 11 266 2 253 8.40e-97 285
MsG0780038848.01.T01 AT2G29310 54.688 256 112 2 11 266 2 253 2.01e-96 284
MsG0780038848.01.T01 AT2G29300 54.475 257 110 3 11 265 2 253 8.59e-96 283
MsG0780038848.01.T01 AT2G29350 54.864 257 111 1 10 266 9 260 1.91e-95 281
MsG0780038848.01.T01 AT2G29370 54.406 261 112 3 8 266 7 262 2.87e-93 276
MsG0780038848.01.T01 AT1G07450 52.344 256 115 3 12 266 4 253 1.41e-92 274
MsG0780038848.01.T01 AT2G29290 52.991 234 106 1 33 266 7 236 6.49e-86 256
MsG0780038848.01.T01 AT2G29320 53.586 237 103 3 32 266 11 242 3.56e-85 255
MsG0780038848.01.T01 AT2G29310 52.766 235 107 2 32 266 21 251 1.52e-82 248
MsG0780038848.01.T01 AT2G29350 52.655 226 102 1 41 266 2 222 2.24e-78 237
MsG0780038848.01.T01 AT2G29340 55.000 200 90 0 11 210 2 201 6.35e-78 234
MsG0780038848.01.T01 AT2G29340 55.000 200 90 0 11 210 2 201 6.35e-78 234
MsG0780038848.01.T01 AT2G29350 58.163 196 82 0 10 205 9 204 4.06e-77 233
MsG0780038848.01.T01 AT2G29320 58.462 195 79 2 11 203 7 201 7.23e-77 232
MsG0780038848.01.T01 AT2G29310 55.000 200 90 0 11 210 2 201 2.12e-75 228
MsG0780038848.01.T01 AT1G07440 57.927 164 69 0 10 173 6 169 8.61e-67 205
MsG0780038848.01.T01 AT2G29310 52.514 179 85 0 32 210 21 199 3.41e-61 192
MsG0780038848.01.T01 AT2G29170 64.583 96 33 1 8 102 7 102 1.96e-39 133
MsG0780038848.01.T01 AT3G03980 33.704 270 162 4 7 264 5 269 4.97e-34 124
MsG0780038848.01.T01 AT5G18210 34.363 259 155 6 15 264 7 259 7.46e-32 118
MsG0780038848.01.T01 AT4G13180 33.333 258 158 5 16 266 13 263 2.17e-29 112
MsG0780038848.01.T01 AT5G18210 33.333 261 146 7 15 266 7 248 5.40e-28 108
MsG0780038848.01.T01 AT4G05530 32.000 250 161 5 16 264 9 250 1.93e-25 101
MsG0780038848.01.T01 AT3G05260 31.939 263 155 7 16 266 37 287 1.61e-24 99.8
MsG0780038848.01.T01 AT3G04000 33.579 271 160 7 7 263 5 269 1.65e-24 99.4
MsG0780038848.01.T01 AT1G54870 29.961 257 163 7 16 263 82 330 1.78e-24 100
MsG0780038848.01.T01 AT1G54870 29.961 257 163 7 16 263 84 332 1.89e-24 100
MsG0780038848.01.T01 AT1G24360 32.271 251 153 8 22 266 80 319 3.19e-24 99.8
MsG0780038848.01.T01 AT3G12800 26.616 263 169 7 16 264 10 262 2.16e-21 91.7
MsG0780038848.01.T01 AT3G03330 30.457 197 132 3 12 203 37 233 1.76e-19 86.7
MsG0780038848.01.T01 AT3G55290 28.679 265 164 9 16 266 18 271 4.25e-18 82.0
MsG0780038848.01.T01 AT3G55290 28.679 265 164 9 16 266 17 270 4.32e-18 82.0
MsG0780038848.01.T01 AT3G26760 29.851 268 171 8 9 265 29 290 2.65e-16 77.4
MsG0780038848.01.T01 AT3G55310 26.336 262 174 8 16 266 17 270 5.04e-16 76.3
MsG0780038848.01.T01 AT5G04900 30.612 196 121 7 22 206 83 274 7.78e-16 76.6
MsG0780038848.01.T01 AT1G63380 25.769 260 179 7 16 266 15 269 8.28e-16 75.9
MsG0780038848.01.T01 AT1G63380 25.769 260 179 7 16 266 17 271 8.56e-16 75.9
MsG0780038848.01.T01 AT1G63380 25.769 260 179 7 16 266 19 273 8.76e-16 75.9
MsG0780038848.01.T01 AT3G06060 28.342 187 125 3 16 198 37 218 9.26e-16 76.3
MsG0780038848.01.T01 AT1G63380 25.769 260 179 7 16 266 22 276 1.06e-15 75.5
MsG0780038848.01.T01 AT3G06060 28.342 187 125 3 16 198 54 235 1.18e-15 75.9
MsG0780038848.01.T01 AT4G03140 28.125 256 174 8 16 265 78 329 3.33e-15 74.7
MsG0780038848.01.T01 AT3G42960 30.712 267 163 9 11 265 5 261 5.94e-15 73.2
MsG0780038848.01.T01 AT3G46170 26.718 262 173 8 16 266 26 279 9.22e-15 72.8
MsG0780038848.01.T01 AT3G51680 27.758 281 182 7 1 265 20 295 1.13e-14 72.8
MsG0780038848.01.T01 AT5G50690 28.571 189 124 6 16 199 45 227 1.13e-14 72.0
MsG0780038848.01.T01 AT5G50590 28.571 189 124 6 16 199 45 227 1.13e-14 72.0
MsG0780038848.01.T01 AT5G50690 28.571 189 124 6 16 199 45 227 2.74e-14 71.6
MsG0780038848.01.T01 AT5G50590 28.571 189 124 6 16 199 45 227 2.74e-14 71.6
MsG0780038848.01.T01 AT1G62610 25.000 260 181 7 16 266 15 269 3.83e-14 70.9
MsG0780038848.01.T01 AT1G62610 25.000 260 181 7 16 266 14 268 4.10e-14 70.9
MsG0780038848.01.T01 AT1G62610 25.000 260 181 7 16 266 19 273 4.32e-14 70.9
MsG0780038848.01.T01 AT3G03350 31.847 157 94 3 51 204 207 353 4.59e-14 71.6
MsG0780038848.01.T01 AT1G62610 25.000 260 181 7 16 266 13 267 5.03e-14 70.9
MsG0780038848.01.T01 AT4G13250 28.293 205 126 4 22 206 165 368 1.05e-13 70.9
MsG0780038848.01.T01 AT2G17845 23.664 262 184 7 16 266 47 303 1.64e-13 69.7
MsG0780038848.01.T01 AT5G65205 30.726 179 117 4 22 199 12 184 2.74e-13 68.6
MsG0780038848.01.T01 AT3G47350 28.704 216 139 8 18 226 46 253 2.82e-13 68.9
MsG0780038848.01.T01 AT3G47350 28.311 219 142 8 15 226 43 253 3.37e-13 68.6
MsG0780038848.01.T01 AT1G49670 31.222 221 134 9 18 225 6 221 1.12e-12 68.2
MsG0780038848.01.T01 AT1G49670 31.222 221 134 9 18 225 6 221 1.24e-12 67.8
MsG0780038848.01.T01 AT1G52340 29.699 266 163 10 16 265 18 275 1.53e-12 66.6
MsG0780038848.01.T01 AT5G10050 28.421 190 129 4 22 210 11 194 1.92e-12 66.2
MsG0780038848.01.T01 AT3G26770 28.137 263 166 9 16 265 41 293 1.02e-11 64.3
MsG0780038848.01.T01 AT4G13250 27.805 205 125 5 22 206 165 366 1.68e-11 64.3
MsG0780038848.01.T01 AT5G50600 29.648 199 127 8 15 207 44 235 1.91e-11 63.9
MsG0780038848.01.T01 AT5G50700 29.648 199 127 8 15 207 44 235 1.91e-11 63.9
MsG0780038848.01.T01 AT2G47140 25.954 262 170 7 16 266 6 254 2.60e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGTTAGCAGAATT+TGG 0.185342 7:+53976997 MsG0780038848.01.T01:CDS
ATAATTAAAATTACCTTTAG+AGG 0.208184 7:-53978642 None:intergenic
CCATTCCAATGCTAAGTTCT+TGG 0.213276 7:-53978773 None:intergenic
GTATACATATCCTCAATTTC+AGG 0.273951 7:+53978584 MsG0780038848.01.T01:CDS
ACCTGTGATGACCTTACTTT+TGG 0.297664 7:+53978834 MsG0780038848.01.T01:CDS
GATCAAAGATGGTCACTAAA+AGG 0.312455 7:+53976821 MsG0780038848.01.T01:CDS
ACCAATGCTGATATATCTTT+AGG 0.318330 7:-53979608 None:intergenic
TTAACAAATGTTTGAAAGAA+TGG 0.322643 7:+53977058 MsG0780038848.01.T01:CDS
GTTCTTGGTGCATTGATTCA+TGG 0.329472 7:-53978758 None:intergenic
GTATTATCTATGATGGGTTT+AGG 0.353458 7:-53978458 None:intergenic
TTCATCAGTATTATCTATGA+TGG 0.366382 7:-53978465 None:intergenic
CGTGCTAATGTTGTGGCTCC+TGG 0.373198 7:+53978811 MsG0780038848.01.T01:CDS
GGAATGACAGCTCTAGTAAC+TGG 0.387510 7:+53976842 MsG0780038848.01.T01:CDS
ATGGTAACCAGACACAAAAT+TGG 0.420948 7:-53978510 None:intergenic
CACTGTTAGGTAAACAATGC+TGG 0.424573 7:+53978425 MsG0780038848.01.T01:intron
GGTGTGCAAGTTGGCACAAA+TGG 0.434463 7:-53978529 None:intergenic
CCAGCTTCTTCACACATAAC+CGG 0.436902 7:+53979647 MsG0780038848.01.T01:CDS
ATCTGCTGCTATAATTTGTC+CGG 0.440485 7:-53979666 None:intergenic
GAAGATATAACAACTACAAT+TGG 0.449713 7:+53978485 MsG0780038848.01.T01:CDS
ACAGTAGCTTCAATCTTTCA+AGG 0.454086 7:+53977156 MsG0780038848.01.T01:CDS
TCTGTCTATGCAGCCTCTAA+AGG 0.472464 7:+53978629 MsG0780038848.01.T01:CDS
CATAGCTGTCTCCAAAAGTA+AGG 0.485794 7:-53978845 None:intergenic
ATCAATCAGGTATGCAATTG+TGG 0.492239 7:+53976978 MsG0780038848.01.T01:intron
CGGAGTGGATAATGCTATCA+AGG 0.492998 7:+53979547 MsG0780038848.01.T01:CDS
ACTGGTGGAACCCGAGGCAT+AGG 0.498705 7:+53976860 MsG0780038848.01.T01:CDS
GGCTTTGAGACCTGAAATTG+AGG 0.516922 7:-53978594 None:intergenic
TCATCAGTATTATCTATGAT+GGG 0.517347 7:-53978464 None:intergenic
CCAAGAACTTAGCATTGGAA+TGG 0.520563 7:+53978773 MsG0780038848.01.T01:CDS
CAAGAACTTAGCATTGGAAT+GGG 0.525445 7:+53978774 MsG0780038848.01.T01:CDS
AGTAAGGTCATCACAGGTCC+AGG 0.529196 7:-53978829 None:intergenic
GAGAACTGACCCTATGCCTC+GGG 0.531174 7:-53976870 None:intergenic
CAAACACCTAGTGGTCGGAT+TGG 0.531397 7:+53979581 MsG0780038848.01.T01:CDS
ACCTAAAGATATATCAGCAT+TGG 0.531601 7:+53979607 MsG0780038848.01.T01:CDS
CCGGTTATGTGTGAAGAAGC+TGG 0.541993 7:-53979647 None:intergenic
GGTTCTCCAATCCGACCACT+AGG 0.544965 7:-53979587 None:intergenic
ATGCACCAAGAACTTAGCAT+TGG 0.554507 7:+53978768 MsG0780038848.01.T01:CDS
TTGAAAGAATGGAAAGGCAA+AGG 0.557601 7:+53977069 MsG0780038848.01.T01:CDS
ACTGTTAGGTAAACAATGCT+GGG 0.565713 7:+53978426 MsG0780038848.01.T01:intron
TCCAAAAGTAAGGTCATCAC+AGG 0.566176 7:-53978835 None:intergenic
CTTAGCATTGGAATGGGCAA+AGG 0.572011 7:+53978780 MsG0780038848.01.T01:CDS
AGAGAACTGACCCTATGCCT+CGG 0.576626 7:-53976871 None:intergenic
GCAGCTTCAAAGATCAAAGA+TGG 0.579135 7:+53976810 MsG0780038848.01.T01:CDS
TAATATTCGTGCTAATGTTG+TGG 0.584061 7:+53978804 MsG0780038848.01.T01:CDS
GCTGCATAGACAGAAACAAA+AGG 0.589616 7:-53978620 None:intergenic
GGACAAATTATAGCAGCAGA+TGG 0.598661 7:+53979668 MsG0780038848.01.T01:CDS
CTGGTGGAACCCGAGGCATA+GGG 0.613722 7:+53976861 MsG0780038848.01.T01:CDS
CAAATTATAGCAGCAGATGG+AGG 0.615495 7:+53979671 MsG0780038848.01.T01:CDS
CTTGATAGCATTATCCACTC+CGG 0.625119 7:-53979546 None:intergenic
CTAGTAACTGGTGGAACCCG+AGG 0.629591 7:+53976854 MsG0780038848.01.T01:CDS
ATAGACAGAAACAAAAGGCA+AGG 0.644062 7:-53978615 None:intergenic
AAATGTTTGAAAGAATGGAA+AGG 0.648117 7:+53977063 MsG0780038848.01.T01:CDS
TGTCTCAAACACCTAGTGGT+CGG 0.653560 7:+53979576 MsG0780038848.01.T01:CDS
ATAGTGTCTCAAACACCTAG+TGG 0.659894 7:+53979572 MsG0780038848.01.T01:CDS
ATAGAAATTAGATGCCGGAG+TGG 0.664921 7:+53979532 MsG0780038848.01.T01:intron
ATGACAGCTCTAGTAACTGG+TGG 0.670365 7:+53976845 MsG0780038848.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTATTTTTTAAAAT+AGG - Chr7:53979168-53979187 None:intergenic 0.0%
!! TTATTAAAGTTATTAAGTTT+CGG + Chr7:53977380-53977399 MsG0780038848.01.T01:intron 10.0%
!!! TAATTTTTTTATATTTTTGG+TGG + Chr7:53977804-53977823 MsG0780038848.01.T01:intron 10.0%
!!! TATTTTTTTTTTTTGAGAAA+AGG - Chr7:53978284-53978303 None:intergenic 10.0%
!!! TTATTAAAGTTTTTTTTGAA+AGG + Chr7:53977352-53977371 MsG0780038848.01.T01:intron 10.0%
!! ATAATTAAAATTACCTTTAG+AGG - Chr7:53978645-53978664 None:intergenic 15.0%
!! TTTCTCTTAAAAAAATTAGT+CGG + Chr7:53979374-53979393 MsG0780038848.01.T01:intron 15.0%
!!! AATAGGTAATTTAGTTTTTT+TGG - Chr7:53979151-53979170 None:intergenic 15.0%
!!! ATATTTGTTAAAATTCACAT+GGG + Chr7:53978060-53978079 MsG0780038848.01.T01:intron 15.0%
!!! CAAAAAATATTTTTTTGTAG+AGG + Chr7:53979057-53979076 MsG0780038848.01.T01:intron 15.0%
!!! CTTAAAAGTGATTTTTTTTA+AGG - Chr7:53978959-53978978 None:intergenic 15.0%
!!! GTAAAATTTAACATTTTTCA+AGG + Chr7:53978236-53978255 MsG0780038848.01.T01:intron 15.0%
!!! GTTAGTAAGATTTTTTTTAA+AGG - Chr7:53977784-53977803 None:intergenic 15.0%
!!! TAATCATTCAAATTTGATTT+TGG + Chr7:53977203-53977222 MsG0780038848.01.T01:intron 15.0%
!! ACTTTAATAAAATACCATTG+TGG - Chr7:53977342-53977361 None:intergenic 20.0%
!! CTTTAATAAAATACCATTGT+GGG - Chr7:53977341-53977360 None:intergenic 20.0%
!! GTCAATTAGACAAAAAAAAA+AGG - Chr7:53977422-53977441 None:intergenic 20.0%
!! TAGACAAAAAAAAAAGGTTA+CGG - Chr7:53977416-53977435 None:intergenic 20.0%
!! TCATATTATATCCTTTAACT+TGG + Chr7:53978671-53978690 MsG0780038848.01.T01:intron 20.0%
!! TTAACAAATGTTTGAAAGAA+TGG + Chr7:53977058-53977077 MsG0780038848.01.T01:CDS 20.0%
!! TTCTCTTAAAAAAATTAGTC+GGG + Chr7:53979375-53979394 MsG0780038848.01.T01:intron 20.0%
!!! AAATTTTTAAAAACCCACAA+TGG + Chr7:53977325-53977344 MsG0780038848.01.T01:intron 20.0%
!!! CAGTTGACTTTATTATAAAA+TGG - Chr7:53977634-53977653 None:intergenic 20.0%
!!! CTTTTTTTGAATAATCAATC+AGG + Chr7:53976965-53976984 MsG0780038848.01.T01:intron 20.0%
!!! GATATTTGTTAAAATTCACA+TGG + Chr7:53978059-53978078 MsG0780038848.01.T01:intron 20.0%
!!! GATTTTTTTTAAAGGATAGT+AGG - Chr7:53977776-53977795 None:intergenic 20.0%
!!! TGATTGGTTAAAATTCATAT+GGG - Chr7:53978106-53978125 None:intergenic 20.0%
!!! TTGATTGGTTAAAATTCATA+TGG - Chr7:53978107-53978126 None:intergenic 20.0%
!!! TTTTTATAGAAATTAGATGC+CGG + Chr7:53979527-53979546 MsG0780038848.01.T01:intron 20.0%
! AAATGTTTGAAAGAATGGAA+AGG + Chr7:53977063-53977082 MsG0780038848.01.T01:CDS 25.0%
! AATCTCCAAACATAATTTCT+TGG + Chr7:53979237-53979256 MsG0780038848.01.T01:intron 25.0%
! AGGATACAAAAGTTCAAATT+AGG - Chr7:53979462-53979481 None:intergenic 25.0%
! ATTGAATTTCTCAAACTGTT+AGG + Chr7:53978023-53978042 MsG0780038848.01.T01:intron 25.0%
! CAATTCATTGTAATATGCAT+TGG - Chr7:53977512-53977531 None:intergenic 25.0%
! CATTATAGCTAAAGCATAAA+AGG - Chr7:53979482-53979501 None:intergenic 25.0%
! CTTCTTATCAATTTCCTTAA+GGG + Chr7:53977676-53977695 MsG0780038848.01.T01:intron 25.0%
! GAAAAGGTCACTAATATAAT+TGG - Chr7:53978268-53978287 None:intergenic 25.0%
! GAAGATATAACAACTACAAT+TGG + Chr7:53978485-53978504 MsG0780038848.01.T01:CDS 25.0%
! TATACAATCAAAACAAAGCA+GGG + Chr7:53977272-53977291 MsG0780038848.01.T01:intron 25.0%
! TCATCAGTATTATCTATGAT+GGG - Chr7:53978467-53978486 None:intergenic 25.0%
! TTATACAATCAAAACAAAGC+AGG + Chr7:53977271-53977290 MsG0780038848.01.T01:intron 25.0%
! TTCATCAGTATTATCTATGA+TGG - Chr7:53978468-53978487 None:intergenic 25.0%
!! GTCACTAATATAATTGGTTT+AGG - Chr7:53978262-53978281 None:intergenic 25.0%
!!! ATCCAGATGCTTTTAAAAAA+GGG - Chr7:53978553-53978572 None:intergenic 25.0%
!!! CTCTTTTTAATTGTACCATT+GGG + Chr7:53977868-53977887 MsG0780038848.01.T01:intron 25.0%
!!! TACAATTAAAAAGAGCACTA+AGG - Chr7:53977863-53977882 None:intergenic 25.0%
!!! TATCCAGATGCTTTTAAAAA+AGG - Chr7:53978554-53978573 None:intergenic 25.0%
!!! TTTCTTTTGAGTTGCAATTT+TGG - Chr7:53977947-53977966 None:intergenic 25.0%
!!! TTTTTAAAAGCATCTGGATA+TGG + Chr7:53978554-53978573 MsG0780038848.01.T01:CDS 25.0%
AATGATAATAAGTGCCCTTA+AGG - Chr7:53977693-53977712 None:intergenic 30.0%
ACCAATGCTGATATATCTTT+AGG - Chr7:53979611-53979630 None:intergenic 30.0%
ACCTAAAGATATATCAGCAT+TGG + Chr7:53979607-53979626 MsG0780038848.01.T01:CDS 30.0%
AGTTCAAATTAGGCCAAATT+AGG - Chr7:53979452-53979471 None:intergenic 30.0%
ATACAATCAAAACAAAGCAG+GGG + Chr7:53977273-53977292 MsG0780038848.01.T01:intron 30.0%
ATCAATTGAGTTATGCTCAA+AGG + Chr7:53977537-53977556 MsG0780038848.01.T01:intron 30.0%
CAACACCAAGAAATTATGTT+TGG - Chr7:53979245-53979264 None:intergenic 30.0%
GCTTCTTATCAATTTCCTTA+AGG + Chr7:53977675-53977694 MsG0780038848.01.T01:intron 30.0%
GTATACATATCCTCAATTTC+AGG + Chr7:53978584-53978603 MsG0780038848.01.T01:CDS 30.0%
TAATATTCGTGCTAATGTTG+TGG + Chr7:53978804-53978823 MsG0780038848.01.T01:CDS 30.0%
TCAATTGAGTTATGCTCAAA+GGG + Chr7:53977538-53977557 MsG0780038848.01.T01:intron 30.0%
TGATCAACGTGAAAAATTGA+TGG + Chr7:53977131-53977150 MsG0780038848.01.T01:CDS 30.0%
TTACGTTAAACAAACGCAAA+AGG + Chr7:53979188-53979207 MsG0780038848.01.T01:intron 30.0%
!! ACACCTATTTCTATCTATGT+AGG + Chr7:53978733-53978752 MsG0780038848.01.T01:intron 30.0%
!! ATAATTTCTTGGTGTTGCAA+AGG + Chr7:53979248-53979267 MsG0780038848.01.T01:intron 30.0%
!! GCTCTTTTTAATTGTACCAT+TGG + Chr7:53977867-53977886 MsG0780038848.01.T01:intron 30.0%
!! GTATTATCTATGATGGGTTT+AGG - Chr7:53978461-53978480 None:intergenic 30.0%
!!! CAATTTTGGTTTAGGCTAAA+AGG - Chr7:53978318-53978337 None:intergenic 30.0%
!!! TTGAGTTGCAATTTTGGTTT+AGG - Chr7:53978326-53978345 None:intergenic 30.0%
AAATTAGGCCAAATTAGGCA+TGG - Chr7:53979447-53979466 None:intergenic 35.0%
AACTGTTAGGTAAACAATGC+TGG + Chr7:53978036-53978055 MsG0780038848.01.T01:intron 35.0%
AAGTGTTCACGTATTGAGAA+GGG + Chr7:53979278-53979297 MsG0780038848.01.T01:intron 35.0%
ACAGTAGCTTCAATCTTTCA+AGG + Chr7:53977156-53977175 MsG0780038848.01.T01:CDS 35.0%
ACCCTTAAAGGTGAATAAAC+AGG + Chr7:53977464-53977483 MsG0780038848.01.T01:intron 35.0%
ACTGTTAGGTAAACAATGCT+GGG + Chr7:53978037-53978056 MsG0780038848.01.T01:intron 35.0%
ATAGACAGAAACAAAAGGCA+AGG - Chr7:53978618-53978637 None:intergenic 35.0%
ATCAATCAGGTATGCAATTG+TGG + Chr7:53976978-53976997 MsG0780038848.01.T01:intron 35.0%
ATGGTAACCAGACACAAAAT+TGG - Chr7:53978513-53978532 None:intergenic 35.0%
CCCTGTTTATTCACCTTTAA+GGG - Chr7:53977468-53977487 None:intergenic 35.0%
CCCTTAAAGGTGAATAAACA+GGG + Chr7:53977465-53977484 MsG0780038848.01.T01:intron 35.0%
CTAAATTGCCATGCCTAATT+TGG + Chr7:53979436-53979455 MsG0780038848.01.T01:intron 35.0%
GATCAAAGATGGTCACTAAA+AGG + Chr7:53976821-53976840 MsG0780038848.01.T01:CDS 35.0%
GCTCCTACATAGATAGAAAT+AGG - Chr7:53978739-53978758 None:intergenic 35.0%
GGAACTTTGCAGAAGATAAT+TGG + Chr7:53978692-53978711 MsG0780038848.01.T01:intron 35.0%
TCCCTGTTTATTCACCTTTA+AGG - Chr7:53977469-53977488 None:intergenic 35.0%
TCTGCAAAGTTCCAAGTTAA+AGG - Chr7:53978685-53978704 None:intergenic 35.0%
TGAGTGAATTTCTCACTGTT+AGG + Chr7:53978412-53978431 MsG0780038848.01.T01:intron 35.0%
TTCAACACACTCTCTTTGAT+TGG - Chr7:53978122-53978141 None:intergenic 35.0%
TTGAAAGAATGGAAAGGCAA+AGG + Chr7:53977069-53977088 MsG0780038848.01.T01:CDS 35.0%
! ATCTGCTGCTATAATTTGTC+CGG - Chr7:53979669-53979688 None:intergenic 35.0%
! ATTGGTACCAATTTTGTGTC+TGG + Chr7:53978503-53978522 MsG0780038848.01.T01:CDS 35.0%
! CAAGAACTTAGCATTGGAAT+GGG + Chr7:53978774-53978793 MsG0780038848.01.T01:CDS 35.0%
! GCAAAGGATTTTGTGTAACA+GGG + Chr7:53977085-53977104 MsG0780038848.01.T01:CDS 35.0%
! GCAAAGTTGCAACATTTTGA+CGG - Chr7:53977900-53977919 None:intergenic 35.0%
! TTAAAAAAGGGTGTGCAAGT+TGG - Chr7:53978541-53978560 None:intergenic 35.0%
!! AAAGTTGCAACATTTTGACG+GGG - Chr7:53977898-53977917 None:intergenic 35.0%
!! ACCTTTAAGGGTTGATTTTC+CGG - Chr7:53977456-53977475 None:intergenic 35.0%
!! CAAAGTTGCAACATTTTGAC+GGG - Chr7:53977899-53977918 None:intergenic 35.0%
!!! CACCCTTTTTTAAAAGCATC+TGG + Chr7:53978548-53978567 MsG0780038848.01.T01:CDS 35.0%
ATAGAAATTAGATGCCGGAG+TGG + Chr7:53979532-53979551 MsG0780038848.01.T01:intron 40.0%
ATAGTGTCTCAAACACCTAG+TGG + Chr7:53979572-53979591 MsG0780038848.01.T01:CDS 40.0%
ATGCACCAAGAACTTAGCAT+TGG + Chr7:53978768-53978787 MsG0780038848.01.T01:CDS 40.0%
ATGGGATCCACATGATTTAC+TGG - Chr7:53978088-53978107 None:intergenic 40.0%
CAAATTATAGCAGCAGATGG+AGG + Chr7:53979671-53979690 MsG0780038848.01.T01:CDS 40.0%
CAAGTGTTCACGTATTGAGA+AGG + Chr7:53979277-53979296 MsG0780038848.01.T01:intron 40.0%
CACTGTTAGGTAAACAATGC+TGG + Chr7:53978425-53978444 MsG0780038848.01.T01:intron 40.0%
CATAGCTGTCTCCAAAAGTA+AGG - Chr7:53978848-53978867 None:intergenic 40.0%
CCATTCCAATGCTAAGTTCT+TGG - Chr7:53978776-53978795 None:intergenic 40.0%
CTTCTCAATACGTGAACACT+TGG - Chr7:53979279-53979298 None:intergenic 40.0%
GCAGCTTCAAAGATCAAAGA+TGG + Chr7:53976810-53976829 MsG0780038848.01.T01:CDS 40.0%
GCTGCATAGACAGAAACAAA+AGG - Chr7:53978623-53978642 None:intergenic 40.0%
GGACAAATTATAGCAGCAGA+TGG + Chr7:53979668-53979687 MsG0780038848.01.T01:CDS 40.0%
GTGGAAGAGTTAGCAGAATT+TGG + Chr7:53976997-53977016 MsG0780038848.01.T01:CDS 40.0%
TCCAAAAGTAAGGTCATCAC+AGG - Chr7:53978838-53978857 None:intergenic 40.0%
TGGGATCCACATGATTTACT+GGG - Chr7:53978087-53978106 None:intergenic 40.0%
! ACCTGTGATGACCTTACTTT+TGG + Chr7:53978834-53978853 MsG0780038848.01.T01:CDS 40.0%
! CCAAGAACTTAGCATTGGAA+TGG + Chr7:53978773-53978792 MsG0780038848.01.T01:CDS 40.0%
! CTTGATAGCATTATCCACTC+CGG - Chr7:53979549-53979568 None:intergenic 40.0%
! GGCAAAGGATTTTGTGTAAC+AGG + Chr7:53977084-53977103 MsG0780038848.01.T01:CDS 40.0%
!! CCTTTAAGGGTTGATTTTCC+GGG - Chr7:53977455-53977474 None:intergenic 40.0%
!! CTTACTTTTGGAGACAGCTA+TGG + Chr7:53978846-53978865 MsG0780038848.01.T01:CDS 40.0%
!! GTTCTTGGTGCATTGATTCA+TGG - Chr7:53978761-53978780 None:intergenic 40.0%
!! TAATTGACTAGCTTAGTGCC+CGG + Chr7:53977434-53977453 MsG0780038848.01.T01:intron 40.0%
ATGGGTCCCAGTAAATCATG+TGG + Chr7:53978078-53978097 MsG0780038848.01.T01:intron 45.0%
CCAGCTTCTTCACACATAAC+CGG + Chr7:53979647-53979666 MsG0780038848.01.T01:CDS 45.0%
CCCGGAAAATCAACCCTTAA+AGG + Chr7:53977452-53977471 MsG0780038848.01.T01:intron 45.0%
CGGAGTGGATAATGCTATCA+AGG + Chr7:53979547-53979566 MsG0780038848.01.T01:CDS 45.0%
TCTGTCTATGCAGCCTCTAA+AGG + Chr7:53978629-53978648 MsG0780038848.01.T01:CDS 45.0%
TGTCTCAAACACCTAGTGGT+CGG + Chr7:53979576-53979595 MsG0780038848.01.T01:CDS 45.0%
! ATGACAGCTCTAGTAACTGG+TGG + Chr7:53976845-53976864 MsG0780038848.01.T01:CDS 45.0%
! CTTAGCATTGGAATGGGCAA+AGG + Chr7:53978780-53978799 MsG0780038848.01.T01:CDS 45.0%
! GGAATGACAGCTCTAGTAAC+TGG + Chr7:53976842-53976861 MsG0780038848.01.T01:CDS 45.0%
!! GGCTTTGAGACCTGAAATTG+AGG - Chr7:53978597-53978616 None:intergenic 45.0%
!! TTGCAACATTTTGACGGGGA+TGG - Chr7:53977894-53977913 None:intergenic 45.0%
!!! AACTAATTTTTTTATATTTT+TGG + Chr7:53977801-53977820 MsG0780038848.01.T01:intron 5.0%
AGAGAACTGACCCTATGCCT+CGG - Chr7:53976874-53976893 None:intergenic 50.0%
AGTAAGGTCATCACAGGTCC+AGG - Chr7:53978832-53978851 None:intergenic 50.0%
CAAACACCTAGTGGTCGGAT+TGG + Chr7:53979581-53979600 MsG0780038848.01.T01:CDS 50.0%
CAGACAGACGCTAAGTGAAG+AGG - Chr7:53978910-53978929 None:intergenic 50.0%
CCGGTTATGTGTGAAGAAGC+TGG - Chr7:53979650-53979669 None:intergenic 50.0%
! GGTGTGCAAGTTGGCACAAA+TGG - Chr7:53978532-53978551 None:intergenic 50.0%
!!! ACAAAGCAGGGGCTAGCTTT+TGG + Chr7:53977284-53977303 MsG0780038848.01.T01:intron 50.0%
CGTGCTAATGTTGTGGCTCC+TGG + Chr7:53978811-53978830 MsG0780038848.01.T01:CDS 55.0%
CTAGTAACTGGTGGAACCCG+AGG + Chr7:53976854-53976873 MsG0780038848.01.T01:CDS 55.0%
GAGAACTGACCCTATGCCTC+GGG - Chr7:53976873-53976892 None:intergenic 55.0%
GGTTCTCCAATCCGACCACT+AGG - Chr7:53979590-53979609 None:intergenic 55.0%
! TTTTGACGGGGATGGCCCAA+TGG - Chr7:53977886-53977905 None:intergenic 55.0%
ACTGGTGGAACCCGAGGCAT+AGG + Chr7:53976860-53976879 MsG0780038848.01.T01:CDS 60.0%
CTGGTGGAACCCGAGGCATA+GGG + Chr7:53976861-53976880 MsG0780038848.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53976791 53979706 53976791 ID=MsG0780038848.01;Name=MsG0780038848.01
Chr7 mRNA 53976791 53979706 53976791 ID=MsG0780038848.01.T01;Parent=MsG0780038848.01;Name=MsG0780038848.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|5|0|266
Chr7 exon 53976791 53976882 53976791 ID=MsG0780038848.01.T01:exon:7523;Parent=MsG0780038848.01.T01
Chr7 exon 53976987 53977194 53976987 ID=MsG0780038848.01.T01:exon:7524;Parent=MsG0780038848.01.T01
Chr7 exon 53978434 53978650 53978434 ID=MsG0780038848.01.T01:exon:7525;Parent=MsG0780038848.01.T01
Chr7 exon 53978755 53978867 53978755 ID=MsG0780038848.01.T01:exon:7526;Parent=MsG0780038848.01.T01
Chr7 exon 53979536 53979706 53979536 ID=MsG0780038848.01.T01:exon:7527;Parent=MsG0780038848.01.T01
Chr7 CDS 53976791 53976882 53976791 ID=MsG0780038848.01.T01:cds;Parent=MsG0780038848.01.T01
Chr7 CDS 53976987 53977194 53976987 ID=MsG0780038848.01.T01:cds;Parent=MsG0780038848.01.T01
Chr7 CDS 53978434 53978650 53978434 ID=MsG0780038848.01.T01:cds;Parent=MsG0780038848.01.T01
Chr7 CDS 53978755 53978867 53978755 ID=MsG0780038848.01.T01:cds;Parent=MsG0780038848.01.T01
Chr7 CDS 53979536 53979706 53979536 ID=MsG0780038848.01.T01:cds;Parent=MsG0780038848.01.T01
Gene Sequence

>MsG0780038848.01.T01

ATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATCAAAGATGGTCACTAAAAGGAATGACAGCTCTAGTAACTGGTGGAACCCGAGGCATAGGGTATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGTGTGCATATATGTTCACGAAATCAAGAAGATATTAACAAATGTTTGAAAGAATGGAAAGGCAAAGGATTTTGTGTAACAGGGTCAACTTGTGATTTATTATTGCGTGATCAACGTGAAAAATTGATGGAAACAGTAGCTTCAATCTTTCAAGGAAAACTCAATATTCTAGTAAACAATGCTGGGACATTTACTCCTAAACCCATCATAGATAATACTGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGCCAACTTGCACACCCTTTTTTAAAAGCATCTGGATATGGAAGCATAGTATACATATCCTCAATTTCAGGTCTCAAAGCCTTGCCTTTTGTTTCTGTCTATGCAGCCTCTAAAGGAGCCATGAATCAATGCACCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCTAATGTTGTGGCTCCTGGACCTGTGATGACCTTACTTTTGGAGACAGCTATGAAATTAGATGCCGGAGTGGATAATGCTATCAAGGATATAGTGTCTCAAACACCTAGTGGTCGGATTGGAGAACCTAAAGATATATCAGCATTGGTTGCTTTTCTTTGTCTTCCAGCTTCTTCACACATAACCGGACAAATTATAGCAGCAGATGGAGGCTTCACTATTTAA

Protein sequence

>MsG0780038848.01.T01

MAETKLSSFKDQRWSLKGMTALVTGGTRGIGYAIVEELAEFGASVHICSRNQEDINKCLKEWKGKGFCVTGSTCDLLLRDQREKLMETVASIFQGKLNILVNNAGTFTPKPIIDNTDEDITTTIGTNFVSGYHLCQLAHPFLKASGYGSIVYISSISGLKALPFVSVYAASKGAMNQCTKNLALEWAKDNIRANVVAPGPVMTLLLETAMKLDAGVDNAIKDIVSQTPSGRIGEPKDISALVAFLCLPASSHITGQIIAADGGFTI*