AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015103.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015103.01.T01 MTR_3g062890 95.098 204 10 0 1 204 1 204 1.04e-147 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015103.01.T01 AT5G58260 79.630 162 26 2 47 204 33 191 1.77e-92 269
MsG0380015103.01.T01 AT5G58260 78.030 132 22 2 49 176 35 163 1.00e-71 215

Find 72 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACATTGGTTAGAAAT+TGG 0.199134 3:-65331210 None:intergenic
TTGTAGTCTCTTTGTTTCTT+TGG 0.209156 3:-65331303 None:intergenic
CATGAATCTCAGGCTCATTT+AGG 0.248243 3:+65332451 MsG0380015103.01.T01:intron
GTAACAGTGATAGAAGTAAA+AGG 0.281626 3:+65331461 MsG0380015103.01.T01:CDS
TTGGTTAGAAATTGGAAATT+AGG 0.298624 3:-65331202 None:intergenic
ACCACCAGTCCTTTGGCATT+TGG 0.308230 3:-65332538 None:intergenic
TGACTTCATTGGAGGAGATT+TGG 0.322097 3:+65331516 MsG0380015103.01.T01:CDS
GATTTGGTTAAATTTGATAT+TGG 0.335397 3:+65331532 MsG0380015103.01.T01:CDS
GACCTTACAGCTCGTGGTCT+TGG 0.380827 3:+65331670 MsG0380015103.01.T01:CDS
GGGAAATACCACCTTGCTAT+TGG 0.388797 3:-65332481 None:intergenic
GCTATGAAGCTGTTCCTTGT+TGG 0.392835 3:-65331385 None:intergenic
ACTTTGGTGAGAGTAGTTTC+AGG 0.404266 3:-65331697 None:intergenic
ATGGGATTAGGTGACTTCAT+TGG 0.442642 3:+65331505 MsG0380015103.01.T01:CDS
ATGTTAGCCTCTGCAAGCTT+AGG 0.446007 3:+65331328 MsG0380015103.01.T01:CDS
GATCCACACCACCAGTCCTT+TGG 0.451001 3:-65332545 None:intergenic
GATGAATGATATTAGTTGTA+TGG 0.451236 3:-65331174 None:intergenic
TCATTGCTGAATGTGGAAAT+TGG 0.454528 3:+65333174 MsG0380015103.01.T01:CDS
TCAGCAATGACCCTCACATT+AGG 0.462929 3:-65333161 None:intergenic
TGCAGCAGTGGAATGGGATT+AGG 0.468261 3:+65331493 MsG0380015103.01.T01:CDS
ACCAGTCCTTTGGCATTTGG+TGG 0.474336 3:-65332535 None:intergenic
TCCAATCTGTAATCAACCTC+TGG 0.475049 3:-65332505 None:intergenic
GCCTCTGCAAGCTTAGGTTG+TGG 0.477414 3:+65331334 MsG0380015103.01.T01:CDS
GTGAAATGCAGCAGTGGAAT+GGG 0.480259 3:+65331487 MsG0380015103.01.T01:CDS
GTTGAAAGATAAAGAAACAT+TGG 0.490021 3:-65331221 None:intergenic
CAACACTGGAAGAACGATGA+TGG 0.495851 3:+65331420 MsG0380015103.01.T01:CDS
ACCAGAGGTTGATTACAGAT+TGG 0.496749 3:+65332504 MsG0380015103.01.T01:CDS
TAACAGTGATAGAAGTAAAA+GGG 0.496959 3:+65331462 MsG0380015103.01.T01:CDS
CACCAAGACCACGAGCTGTA+AGG 0.525141 3:-65331672 None:intergenic
AGTGAAATGCAGCAGTGGAA+TGG 0.525909 3:+65331486 MsG0380015103.01.T01:CDS
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 3:+65333100 MsG0380015103.01.T01:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 3:-65333117 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 3:+65333138 MsG0380015103.01.T01:CDS
CCTCATGAAGGAGGGTATGA+AGG 0.537717 3:+65331604 MsG0380015103.01.T01:CDS
TTTCTTGACCTTACAGCTCG+TGG 0.545690 3:+65331664 MsG0380015103.01.T01:CDS
CTGGAAGAACGATGATGGGT+TGG 0.554424 3:+65331425 MsG0380015103.01.T01:CDS
AGGGCAAACAGGATGAACTT+TGG 0.558412 3:-65331713 None:intergenic
GAGAAATGAGATAAAGTGAT+CGG 0.565737 3:-65331149 None:intergenic
GGATTAGGTGACTTCATTGG+AGG 0.569123 3:+65331508 MsG0380015103.01.T01:CDS
AATCTGTAATCAACCTCTGG+TGG 0.569201 3:-65332502 None:intergenic
GCTGAAAATCATAACAACAC+TGG 0.571770 3:+65331406 MsG0380015103.01.T01:CDS
GTTAGAAATTGGAAATTAGG+CGG 0.573232 3:-65331199 None:intergenic
AGAACGATGATGGGTTGGAA+AGG 0.574451 3:+65331430 MsG0380015103.01.T01:CDS
TGTTGCAAAACTTGTGCTTG+AGG 0.576060 3:+65333287 MsG0380015103.01.T01:three_prime_UTR
ATATATACTCCTCATGAAGG+AGG 0.584569 3:+65331595 MsG0380015103.01.T01:CDS
AGAAATTGGAAATTAGGCGG+AGG 0.586679 3:-65331196 None:intergenic
ACCACCAAATGCCAAAGGAC+TGG 0.587702 3:+65332534 MsG0380015103.01.T01:CDS
TTATCGCGTCTTCAACGTCA+AGG 0.593630 3:+65331634 MsG0380015103.01.T01:CDS
TTAAATTTGATATTGGACGT+TGG 0.596364 3:+65331539 MsG0380015103.01.T01:CDS
AACACTAAGGCCTAATGTGA+GGG 0.598775 3:+65333151 MsG0380015103.01.T01:CDS
GCAATATATACTCCTCATGA+AGG 0.600567 3:+65331592 MsG0380015103.01.T01:CDS
GTGAGGGTCATTGCTGAATG+TGG 0.601568 3:+65333167 MsG0380015103.01.T01:CDS
AACACTGGAAGAACGATGAT+GGG 0.605472 3:+65331421 MsG0380015103.01.T01:CDS
CTCACATTAGGCCTTAGTGT+TGG 0.607755 3:-65333149 None:intergenic
TGCTGAATGTTAGAGCATGT+TGG 0.609400 3:-65331361 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 3:-65333136 None:intergenic
ATGCCAAAGGACTGGTGGTG+TGG 0.615122 3:+65332542 MsG0380015103.01.T01:CDS
CAACACTAAGGCCTAATGTG+AGG 0.616666 3:+65333150 MsG0380015103.01.T01:CDS
GAATGATATTAGTTGTATGG+TGG 0.617217 3:-65331171 None:intergenic
TGCTGAATGTGGAAATTGGT+AGG 0.627145 3:+65333178 MsG0380015103.01.T01:CDS
ATCTGTAATCAACCTCTGGT+GGG 0.628296 3:-65332501 None:intergenic
TCTGCAAGCTTAGGTTGTGG+AGG 0.630890 3:+65331337 MsG0380015103.01.T01:CDS
CCTTCATACCCTCCTTCATG+AGG 0.634611 3:-65331604 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 3:+65332470 MsG0380015103.01.T01:CDS
TATATACTCCTCATGAAGGA+GGG 0.636161 3:+65331596 MsG0380015103.01.T01:CDS
GGTGTGGATCATTGAAGCCA+AGG 0.636653 3:+65332558 MsG0380015103.01.T01:CDS
AGGGCAGTGAAATGCAGCAG+TGG 0.648171 3:+65331481 MsG0380015103.01.T01:CDS
CTAACATTCAGCAACCAACA+AGG 0.653000 3:+65331371 MsG0380015103.01.T01:CDS
TCCACAACCTAAGCTTGCAG+AGG 0.654833 3:-65331335 None:intergenic
GCATTACCACCAAATGCCAA+AGG 0.660442 3:+65332529 MsG0380015103.01.T01:CDS
AAGGTGGTATTTCCCACCAG+AGG 0.661184 3:+65332489 MsG0380015103.01.T01:CDS
ACCAAATGCCAAAGGACTGG+TGG 0.665822 3:+65332537 MsG0380015103.01.T01:CDS
GAAAGCAACCAATAGCAAGG+TGG 0.723318 3:+65332473 MsG0380015103.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATTAGAAAATT+TGG - Chr3:65333207-65333226 None:intergenic 10.0%
!!! TACATTCTATAATTTTTTTT+GGG + Chr3:65331901-65331920 MsG0380015103.01.T01:intron 10.0%
!!! TTACATTCTATAATTTTTTT+TGG + Chr3:65331900-65331919 MsG0380015103.01.T01:intron 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG + Chr3:65332788-65332807 MsG0380015103.01.T01:intron 10.0%
!!! TTTGTTTTTATGAAAATAAA+AGG + Chr3:65332787-65332806 MsG0380015103.01.T01:intron 10.0%
!! ATTATTTGTATTATATCTCT+AGG + Chr3:65332724-65332743 MsG0380015103.01.T01:intron 15.0%
!! TGAATATATATTCATTTATC+TGG + Chr3:65333045-65333064 MsG0380015103.01.T01:intron 15.0%
!!! CTCTTTTCTTATTAATTTTA+TGG + Chr3:65332066-65332085 MsG0380015103.01.T01:intron 15.0%
!!! TATTAATTTTATGGACATTT+AGG + Chr3:65332075-65332094 MsG0380015103.01.T01:intron 15.0%
!! AAACAATTTCATCAGAAAAT+AGG - Chr3:65332766-65332785 None:intergenic 20.0%
!! TCATGGAAAGTTATAAATAA+AGG + Chr3:65332868-65332887 MsG0380015103.01.T01:intron 20.0%
!!! ATTCAGTTTAAAAGCATTTA+TGG + Chr3:65331829-65331848 MsG0380015103.01.T01:intron 20.0%
!!! CTCCTTTAAAATTTCTTTTT+CGG + Chr3:65332147-65332166 MsG0380015103.01.T01:intron 20.0%
!!! GATTTGGTTAAATTTGATAT+TGG + Chr3:65331532-65331551 MsG0380015103.01.T01:CDS 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG + Chr3:65332791-65332810 MsG0380015103.01.T01:intron 20.0%
! AAAGAGGAAAAAAACTTACA+GGG - Chr3:65331735-65331754 None:intergenic 25.0%
! AATTGTGCAAACAACTATTT+AGG + Chr3:65331985-65332004 MsG0380015103.01.T01:intron 25.0%
! AATTTCATCAGAAAATAGGT+GGG - Chr3:65332762-65332781 None:intergenic 25.0%
! ATTGCAACAAATTACAAATG+AGG - Chr3:65332923-65332942 None:intergenic 25.0%
! ATTTAAGGACTATAATGACA+AGG - Chr3:65332016-65332035 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG + Chr3:65332851-65332870 MsG0380015103.01.T01:intron 25.0%
! GATGAATGATATTAGTTGTA+TGG - Chr3:65331177-65331196 None:intergenic 25.0%
! GTAATAATAGCTATGAATCA+TGG - Chr3:65331793-65331812 None:intergenic 25.0%
! GTAATGATAGTTATCAATCA+TGG - Chr3:65332177-65332196 None:intergenic 25.0%
! GTTGAAAGATAAAGAAACAT+TGG - Chr3:65331224-65331243 None:intergenic 25.0%
! TAACAGTGATAGAAGTAAAA+GGG + Chr3:65331462-65331481 MsG0380015103.01.T01:CDS 25.0%
! TATATTCACCTAACAACAAT+CGG - Chr3:65333033-65333052 None:intergenic 25.0%
! TTAAATTTGATATTGGACGT+TGG + Chr3:65331539-65331558 MsG0380015103.01.T01:CDS 25.0%
! TTGGTTAGAAATTGGAAATT+AGG - Chr3:65331205-65331224 None:intergenic 25.0%
!! AAAGGAGCAAATAACTATTT+TGG - Chr3:65332134-65332153 None:intergenic 25.0%
!! AAGAAACATTGGTTAGAAAT+TGG - Chr3:65331213-65331232 None:intergenic 25.0%
!! AGCCGAAAAAGAAATTTTAA+AGG - Chr3:65332152-65332171 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG + Chr3:65332698-65332717 MsG0380015103.01.T01:intron 25.0%
!!! AAGCTTTGAAAATTCTGTTT+AGG + Chr3:65331763-65331782 MsG0380015103.01.T01:intron 25.0%
!!! AAGCTTTTAATTTGAAGTGT+TGG - Chr3:65332214-65332233 None:intergenic 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG - Chr3:65332620-65332639 None:intergenic 25.0%
!!! TTGAGAATGCAATTTGTTTT+TGG + Chr3:65331953-65331972 MsG0380015103.01.T01:intron 25.0%
CAAAGCTTGAAAAAAGAAAG+AGG - Chr3:65331751-65331770 None:intergenic 30.0%
CAATTTCATCAGAAAATAGG+TGG - Chr3:65332763-65332782 None:intergenic 30.0%
GAAAGAGGAAAAAAACTTAC+AGG - Chr3:65331736-65331755 None:intergenic 30.0%
GAATGATATTAGTTGTATGG+TGG - Chr3:65331174-65331193 None:intergenic 30.0%
GAGAAATGAGATAAAGTGAT+CGG - Chr3:65331152-65331171 None:intergenic 30.0%
GTAACAGTGATAGAAGTAAA+AGG + Chr3:65331461-65331480 MsG0380015103.01.T01:CDS 30.0%
GTTAGAAATTGGAAATTAGG+CGG - Chr3:65331202-65331221 None:intergenic 30.0%
! AGAATTTTGTCATGAATCTC+AGG + Chr3:65332441-65332460 MsG0380015103.01.T01:intron 30.0%
! CATCTCAATCAAATGCTTTT+AGG + Chr3:65332688-65332707 MsG0380015103.01.T01:intron 30.0%
! TTGTAGTCTCTTTGTTTCTT+TGG - Chr3:65331306-65331325 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG - Chr3:65332621-65332640 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG - Chr3:65332690-65332709 None:intergenic 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG - Chr3:65332619-65332638 None:intergenic 30.0%
AAAAAACTTACAGGGCAAAC+AGG - Chr3:65331727-65331746 None:intergenic 35.0%
ATATATACTCCTCATGAAGG+AGG + Chr3:65331595-65331614 MsG0380015103.01.T01:CDS 35.0%
CTAACAACAATCGGATTTCT+TGG - Chr3:65333024-65333043 None:intergenic 35.0%
GCAATATATACTCCTCATGA+AGG + Chr3:65331592-65331611 MsG0380015103.01.T01:CDS 35.0%
GCTGAAAATCATAACAACAC+TGG + Chr3:65331406-65331425 MsG0380015103.01.T01:CDS 35.0%
TATATACTCCTCATGAAGGA+GGG + Chr3:65331596-65331615 MsG0380015103.01.T01:CDS 35.0%
TCATTGCTGAATGTGGAAAT+TGG + Chr3:65333174-65333193 MsG0380015103.01.T01:CDS 35.0%
! CAAGAAATCCGATTGTTGTT+AGG + Chr3:65333022-65333041 MsG0380015103.01.T01:intron 35.0%
!! AAAAGCATTTATGGTGTTCG+AGG + Chr3:65331838-65331857 MsG0380015103.01.T01:intron 35.0%
AACACTAAGGCCTAATGTGA+GGG + Chr3:65333151-65333170 MsG0380015103.01.T01:CDS 40.0%
AACACTGGAAGAACGATGAT+GGG + Chr3:65331421-65331440 MsG0380015103.01.T01:CDS 40.0%
AAGGAATTGTAGTTCAGCCT+TGG - Chr3:65333120-65333139 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG - Chr3:65332505-65332524 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG - Chr3:65333021-65333040 None:intergenic 40.0%
ACTTTGGTGAGAGTAGTTTC+AGG - Chr3:65331700-65331719 None:intergenic 40.0%
AGAAATTGGAAATTAGGCGG+AGG - Chr3:65331199-65331218 None:intergenic 40.0%
ATCTGTAATCAACCTCTGGT+GGG - Chr3:65332504-65332523 None:intergenic 40.0%
ATGGGATTAGGTGACTTCAT+TGG + Chr3:65331505-65331524 MsG0380015103.01.T01:CDS 40.0%
CAACAGTACAACGATACATG+TGG + Chr3:65332267-65332286 MsG0380015103.01.T01:intron 40.0%
CACATGTATCGTTGTACTGT+TGG - Chr3:65332269-65332288 None:intergenic 40.0%
CATGAATCTCAGGCTCATTT+AGG + Chr3:65332451-65332470 MsG0380015103.01.T01:intron 40.0%
CATTTATCTGGTCAAATGCG+CGG + Chr3:65333057-65333076 MsG0380015103.01.T01:intron 40.0%
CTAACATTCAGCAACCAACA+AGG + Chr3:65331371-65331390 MsG0380015103.01.T01:CDS 40.0%
CTTCATAGATTATGTCGCAC+TGG + Chr3:65332386-65332405 MsG0380015103.01.T01:intron 40.0%
GTAAAGCATAATCCACACCT+TGG - Chr3:65332578-65332597 None:intergenic 40.0%
TAGGAAAGCAACCAATAGCA+AGG + Chr3:65332470-65332489 MsG0380015103.01.T01:CDS 40.0%
TCCAATCTGTAATCAACCTC+TGG - Chr3:65332508-65332527 None:intergenic 40.0%
TGACTTCATTGGAGGAGATT+TGG + Chr3:65331516-65331535 MsG0380015103.01.T01:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG + Chr3:65333178-65333197 MsG0380015103.01.T01:CDS 40.0%
TGCTGAATGTTAGAGCATGT+TGG - Chr3:65331364-65331383 None:intergenic 40.0%
TGTTGCAAAACTTGTGCTTG+AGG + Chr3:65333287-65333306 MsG0380015103.01.T01:three_prime_UTR 40.0%
TTGCAGTTAAGCTGTGATAC+TGG - Chr3:65332960-65332979 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG + Chr3:65332504-65332523 MsG0380015103.01.T01:CDS 40.0%
! GAAAATAAAAGGGAGGTGCA+AGG + Chr3:65332798-65332817 MsG0380015103.01.T01:intron 40.0%
! GCGGTACTAAAATGTTGCTT+TGG + Chr3:65333076-65333095 MsG0380015103.01.T01:intron 40.0%
!! AGTGTTGGTGCATACTACAT+TGG - Chr3:65332199-65332218 None:intergenic 40.0%
!!! TTTTGGTTCTTGAATGTGCG+AGG - Chr3:65332117-65332136 None:intergenic 40.0%
AGGGCAAACAGGATGAACTT+TGG - Chr3:65331716-65331735 None:intergenic 45.0%
AGTGAAATGCAGCAGTGGAA+TGG + Chr3:65331486-65331505 MsG0380015103.01.T01:CDS 45.0%
CAACACTAAGGCCTAATGTG+AGG + Chr3:65333150-65333169 MsG0380015103.01.T01:CDS 45.0%
CAACACTGGAAGAACGATGA+TGG + Chr3:65331420-65331439 MsG0380015103.01.T01:CDS 45.0%
CTCACATTAGGCCTTAGTGT+TGG - Chr3:65333152-65333171 None:intergenic 45.0%
GAAAGCAACCAATAGCAAGG+TGG + Chr3:65332473-65332492 MsG0380015103.01.T01:CDS 45.0%
GCATTACCACCAAATGCCAA+AGG + Chr3:65332529-65332548 MsG0380015103.01.T01:CDS 45.0%
GCTATGAAGCTGTTCCTTGT+TGG - Chr3:65331388-65331407 None:intergenic 45.0%
GGATTAGGTGACTTCATTGG+AGG + Chr3:65331508-65331527 MsG0380015103.01.T01:CDS 45.0%
GTACAACGATACATGTGGTG+TGG + Chr3:65332272-65332291 MsG0380015103.01.T01:intron 45.0%
GTGAAATGCAGCAGTGGAAT+GGG + Chr3:65331487-65331506 MsG0380015103.01.T01:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG - Chr3:65333164-65333183 None:intergenic 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG + Chr3:65333100-65333119 MsG0380015103.01.T01:intron 45.0%
TTATCGCGTCTTCAACGTCA+AGG + Chr3:65331634-65331653 MsG0380015103.01.T01:CDS 45.0%
TTATGGTGTTCGAGGTGTGT+TGG + Chr3:65331846-65331865 MsG0380015103.01.T01:intron 45.0%
TTTCTTGACCTTACAGCTCG+TGG + Chr3:65331664-65331683 MsG0380015103.01.T01:CDS 45.0%
! ATGTTAGCCTCTGCAAGCTT+AGG + Chr3:65331328-65331347 MsG0380015103.01.T01:CDS 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG - Chr3:65333011-65333030 None:intergenic 45.0%
! GGGAAATACCACCTTGCTAT+TGG - Chr3:65332484-65332503 None:intergenic 45.0%
!! AGAACGATGATGGGTTGGAA+AGG + Chr3:65331430-65331449 MsG0380015103.01.T01:CDS 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG + Chr3:65333088-65333107 MsG0380015103.01.T01:intron 45.0%
!!! TTGAAATTTTAATATATTTA+AGG - Chr3:65332031-65332050 None:intergenic 5.0%
AAGGTGGTATTTCCCACCAG+AGG + Chr3:65332489-65332508 MsG0380015103.01.T01:CDS 50.0%
ACCAAATGCCAAAGGACTGG+TGG + Chr3:65332537-65332556 MsG0380015103.01.T01:CDS 50.0%
ACCACCAAATGCCAAAGGAC+TGG + Chr3:65332534-65332553 MsG0380015103.01.T01:CDS 50.0%
ACCACCAGTCCTTTGGCATT+TGG - Chr3:65332541-65332560 None:intergenic 50.0%
ACCAGTCCTTTGGCATTTGG+TGG - Chr3:65332538-65332557 None:intergenic 50.0%
CCTTCATACCCTCCTTCATG+AGG - Chr3:65331607-65331626 None:intergenic 50.0%
GGATCATTGAAGCCAAGGTG+TGG + Chr3:65332563-65332582 MsG0380015103.01.T01:intron 50.0%
GGTGTGGATCATTGAAGCCA+AGG + Chr3:65332558-65332577 MsG0380015103.01.T01:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG + Chr3:65333167-65333186 MsG0380015103.01.T01:CDS 50.0%
TCAGCCTTGGAGAGAACCTA+AGG - Chr3:65333107-65333126 None:intergenic 50.0%
TCCACAACCTAAGCTTGCAG+AGG - Chr3:65331338-65331357 None:intergenic 50.0%
TGCAGCAGTGGAATGGGATT+AGG + Chr3:65331493-65331512 MsG0380015103.01.T01:CDS 50.0%
TTGCTCTGCTGCCAACACTA+AGG + Chr3:65333138-65333157 MsG0380015103.01.T01:CDS 50.0%
! CCTCATGAAGGAGGGTATGA+AGG + Chr3:65331604-65331623 MsG0380015103.01.T01:CDS 50.0%
! TCTGCAAGCTTAGGTTGTGG+AGG + Chr3:65331337-65331356 MsG0380015103.01.T01:CDS 50.0%
!! CTGGAAGAACGATGATGGGT+TGG + Chr3:65331425-65331444 MsG0380015103.01.T01:CDS 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG - Chr3:65333139-65333158 None:intergenic 50.0%
AGGGCAGTGAAATGCAGCAG+TGG + Chr3:65331481-65331500 MsG0380015103.01.T01:CDS 55.0%
CACCAAGACCACGAGCTGTA+AGG - Chr3:65331675-65331694 None:intergenic 55.0%
GACCTTACAGCTCGTGGTCT+TGG + Chr3:65331670-65331689 MsG0380015103.01.T01:CDS 55.0%
GATCCACACCACCAGTCCTT+TGG - Chr3:65332548-65332567 None:intergenic 55.0%
! ATGCCAAAGGACTGGTGGTG+TGG + Chr3:65332542-65332561 MsG0380015103.01.T01:CDS 55.0%
! GCCTCTGCAAGCTTAGGTTG+TGG + Chr3:65331334-65331353 MsG0380015103.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65331148 65333323 65331148 ID=MsG0380015103.01;Name=MsG0380015103.01
Chr3 mRNA 65331148 65333323 65331148 ID=MsG0380015103.01.T01;Parent=MsG0380015103.01;Name=MsG0380015103.01.T01;_AED=0.49;_eAED=0.49;_QI=180|1|1|1|1|1|3|124|204
Chr3 exon 65331148 65331735 65331148 ID=MsG0380015103.01.T01:exon:13086;Parent=MsG0380015103.01.T01
Chr3 exon 65332463 65332579 65332463 ID=MsG0380015103.01.T01:exon:13087;Parent=MsG0380015103.01.T01
Chr3 exon 65333110 65333323 65333110 ID=MsG0380015103.01.T01:exon:13088;Parent=MsG0380015103.01.T01
Chr3 five_prime_UTR 65331148 65331327 65331148 ID=MsG0380015103.01.T01:five_prime_utr;Parent=MsG0380015103.01.T01
Chr3 CDS 65331328 65331735 65331328 ID=MsG0380015103.01.T01:cds;Parent=MsG0380015103.01.T01
Chr3 CDS 65332463 65332579 65332463 ID=MsG0380015103.01.T01:cds;Parent=MsG0380015103.01.T01
Chr3 CDS 65333110 65333199 65333110 ID=MsG0380015103.01.T01:cds;Parent=MsG0380015103.01.T01
Chr3 three_prime_UTR 65333200 65333323 65333200 ID=MsG0380015103.01.T01:three_prime_utr;Parent=MsG0380015103.01.T01
Gene Sequence

>MsG0380015103.01.T01

ATGTTAGCCTCTGCAAGCTTAGGTTGTGGAGGACCAACATGCTCTAACATTCAGCAACCAACAAGGAACAGCTTCATAGCTGAAAATCATAACAACACTGGAAGAACGATGATGGGTTGGAAAGGAAAAGAATGTAACAGTGATAGAAGTAAAAGGGCAGTGAAATGCAGCAGTGGAATGGGATTAGGTGACTTCATTGGAGGAGATTTGGTTAAATTTGATATTGGACGTTGGCTTTCAGATGTTGAAGAACATAAAGCACTTGCAATATATACTCCTCATGAAGGAGGGTATGAAGGACGTTACTTATCGCGTCTTCAACGTCAAGGTTACTATTTTCTTGACCTTACAGCTCGTGGTCTTGGTGATCCTGAAACTACTCTCACCAAAGTTCATCCTGTTTGCCCTGCTCATTTAGGAAAGCAACCAATAGCAAGGTGGTATTTCCCACCAGAGGTTGATTACAGATTGGAAGCATTACCACCAAATGCCAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAAGGCCTAATGTGAGGGTCATTGCTGAATGTGGAAATTGGTAG

Protein sequence

>MsG0380015103.01.T01

MLASASLGCGGPTCSNIQQPTRNSFIAENHNNTGRTMMGWKGKECNSDRSKRAVKCSSGMGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGNW*