AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014795.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014795.01.T01 MTR_3g464380 86.286 175 3 2 44 197 221 395 5.01e-97 291
MsG0380014795.01.T01 MTR_5g071250 77.401 177 19 2 44 199 218 394 2.30e-81 248
MsG0380014795.01.T01 MTR_5g071250 78.286 175 17 2 44 197 218 392 3.31e-80 248
MsG0380014795.01.T01 MTR_4g090580 69.714 175 32 2 44 197 260 434 1.87e-78 244
MsG0380014795.01.T01 MTR_4g045997 38.650 163 70 4 48 180 210 372 1.90e-27 108
MsG0380014795.01.T01 MTR_4g045997 38.650 163 70 4 48 180 210 372 2.31e-27 108
MsG0380014795.01.T01 MTR_2g011730 35.976 164 74 5 48 180 207 370 1.34e-26 106
MsG0380014795.01.T01 MTR_4g091240 35.366 164 75 5 48 180 103 266 4.13e-26 104
MsG0380014795.01.T01 MTR_4g091240 35.366 164 75 5 48 180 207 370 6.14e-26 104
MsG0380014795.01.T01 MTR_4g045993 30.675 163 83 3 48 180 202 364 1.56e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014795.01.T01 AT2G29990 72.571 175 27 2 44 197 225 399 8.30e-74 231
MsG0380014795.01.T01 AT1G07180 73.143 175 26 2 44 197 227 401 1.19e-72 228
MsG0380014795.01.T01 AT4G28220 32.335 167 83 3 48 184 204 370 6.28e-28 110
MsG0380014795.01.T01 AT4G28220 32.335 167 83 3 48 184 204 370 1.11e-27 109
MsG0380014795.01.T01 AT4G21490 32.105 190 92 5 27 180 182 370 2.88e-19 85.5
MsG0380014795.01.T01 AT4G21490 32.105 190 92 5 27 180 183 371 3.00e-19 85.5
MsG0380014795.01.T01 AT4G05020 32.105 190 92 5 27 180 185 373 3.02e-18 82.4
MsG0380014795.01.T01 AT4G05020 32.105 190 92 5 27 180 185 373 3.11e-18 82.4
MsG0380014795.01.T01 AT2G20800 34.356 163 77 4 48 180 216 378 2.23e-16 77.0

Find 45 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGTTCCATTTGGTTTGC+TGG 0.243195 3:-60164005 MsG0380014795.01.T01:CDS
TATGGTGTTTACACCTCTTT+TGG 0.265050 3:-60165939 MsG0380014795.01.T01:CDS
TTCCATTTGGTTTGCTGGTA+TGG 0.285985 3:-60164000 MsG0380014795.01.T01:CDS
GAATTCAACCTGCTATTTCT+AGG 0.287275 3:-60165863 MsG0380014795.01.T01:CDS
GAACCTCAGTACCATCATTT+AGG 0.327904 3:+60164020 None:intergenic
CACTGTGTTGTTGTGGGAGG+TGG 0.366862 3:-60164641 MsG0380014795.01.T01:CDS
GCAGGTTGAATTCTTCCAAT+AGG 0.380849 3:+60165873 None:intergenic
ACGGCACAATATGTCGGATA+TGG 0.410053 3:-60166832 None:intergenic
GGTTTGCTGGTATGGTCTAC+TGG 0.419015 3:-60163992 MsG0380014795.01.T01:CDS
GATGGTACTGAGGTTCCATT+TGG 0.422519 3:-60164013 MsG0380014795.01.T01:CDS
GTACAAGATGTGTTCTCAAT+AGG 0.425903 3:-60163774 MsG0380014795.01.T01:CDS
AGATCAGTTGCTGAACCTAT+TGG 0.427288 3:-60165888 MsG0380014795.01.T01:CDS
CCTGCTATTTCTAGGGAGCC+TGG 0.442612 3:-60165855 MsG0380014795.01.T01:intron
AATATCACTTGGGCCAATGC+TGG 0.450001 3:+60163708 None:intergenic
TGAGTGGCTTCGTGTTCCTT+CGG 0.474068 3:-60163796 MsG0380014795.01.T01:CDS
AAAGAGGTGTAAACACCATA+TGG 0.476687 3:+60165942 None:intergenic
GTTGTGGGAGGTGGTCCTAC+AGG 0.481106 3:-60164632 MsG0380014795.01.T01:CDS
AGTGGATTTGTTGAAAGTAC+TGG 0.494829 3:-60163744 MsG0380014795.01.T01:CDS
GACCATACCAGCAAACCAAA+TGG 0.501285 3:+60163998 None:intergenic
CTGGTATGGTCTACTGGCGT+TGG 0.502336 3:-60163986 MsG0380014795.01.T01:CDS
TCAGGAGTTCGTCTTGTTCG+TGG 0.502386 3:-60164076 MsG0380014795.01.T01:CDS
ACATTACTTCAAATATCACT+TGG 0.505161 3:+60163697 None:intergenic
AATTCAACCTGCTATTTCTA+GGG 0.505654 3:-60165862 MsG0380014795.01.T01:CDS
TGGGCCAATGCTGGAAGTGT+TGG 0.512381 3:+60163717 None:intergenic
CAGAAGATTATCCTAAATGA+TGG 0.528034 3:-60164031 MsG0380014795.01.T01:CDS
TGTCTCACCTAGGAACCATA+TGG 0.529363 3:-60165957 MsG0380014795.01.T01:intron
AAGACCAACACTTCCAGCAT+TGG 0.547283 3:-60163721 MsG0380014795.01.T01:CDS
GCTTACCTTTGTCAACTGCT+TGG 0.548605 3:+60164322 None:intergenic
ACTTAGTGACTTTATCATGA+AGG 0.567480 3:-60164591 MsG0380014795.01.T01:CDS
CATTACTTCAAATATCACTT+GGG 0.574125 3:+60163698 None:intergenic
CCAGGCTCCCTAGAAATAGC+AGG 0.576342 3:+60165855 None:intergenic
CCACTGAATTCAACTCCTGT+AGG 0.581407 3:+60164617 None:intergenic
TTGCACTGTGTTGTTGTGGG+AGG 0.583309 3:-60164644 MsG0380014795.01.T01:CDS
ACAGGATTGGTGTTGATGAG+TGG 0.587559 3:-60163812 MsG0380014795.01.T01:intron
TTTCTGAAGATGAGAAGCAA+AGG 0.593111 3:-60164670 MsG0380014795.01.T01:CDS
ACACAAGTAGAAGCCAAAAG+AGG 0.602639 3:+60165926 None:intergenic
CAGCAACTGATCTAAACTCA+AGG 0.602732 3:+60165898 None:intergenic
TATGGCAGCACATATGCCAC+CGG 0.614084 3:-60166814 MsG0380014795.01.T01:CDS
TCAAAGATATACTCATGTGA+AGG 0.617326 3:-60164561 MsG0380014795.01.T01:CDS
GAGAACACATCTTGTACCGA+AGG 0.617580 3:+60163780 None:intergenic
TGCTACCAAGCAGTTGACAA+AGG 0.642265 3:-60164327 MsG0380014795.01.T01:intron
CCTACAGGAGTTGAATTCAG+TGG 0.673990 3:-60164617 MsG0380014795.01.T01:CDS
TATCCTAAATGATGGTACTG+AGG 0.675178 3:-60164023 MsG0380014795.01.T01:CDS
AAAATCCGACATACAGCCGG+TGG 0.686855 3:+60166798 None:intergenic
TTCTCAATAGGTGACTGCAG+TGG 0.690005 3:-60163762 MsG0380014795.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGAAAATATAAAAAAAATA+TGG + Chr3:60166402-60166421 None:intergenic 10.0%
!! ACTAGAAAAAAATGATATCA+AGG + Chr3:60164755-60164774 None:intergenic 20.0%
!! AGTAATCTACTAAACAAAAT+TGG + Chr3:60166056-60166075 None:intergenic 20.0%
!! ATACTAGCATTATATTTGTA+AGG + Chr3:60165711-60165730 None:intergenic 20.0%
!! ATAGAGGTAAACTAAATATA+AGG + Chr3:60163894-60163913 None:intergenic 20.0%
!! GAAAATTTGTATTTGATGTT+TGG - Chr3:60165242-60165261 MsG0380014795.01.T01:intron 20.0%
!! TAAATAAAATCCAAAGATGT+GGG + Chr3:60164117-60164136 None:intergenic 20.0%
!!! AAAAATGGATCAGTTTTATT+TGG + Chr3:60164343-60164362 None:intergenic 20.0%
!!! AACTTCAAATGAGTTTTTAA+TGG + Chr3:60164233-60164252 None:intergenic 20.0%
!!! ATCTTTGGATTTTATTTACT+TGG - Chr3:60164119-60164138 MsG0380014795.01.T01:intron 20.0%
!!! GTTATGTTTCTAGTTATATA+AGG + Chr3:60164080-60164099 None:intergenic 20.0%
!!! TATATTTTCTCAATTCTTAC+TGG + Chr3:60164938-60164957 None:intergenic 20.0%
!!! TATCTTAAGTTGTTTTTGAT+TGG - Chr3:60166293-60166312 MsG0380014795.01.T01:intron 20.0%
! AAAAAAACTTACATGTTGTG+TGG + Chr3:60163847-60163866 None:intergenic 25.0%
! AAAGATGGTAAAAGGAAAAA+TGG + Chr3:60164358-60164377 None:intergenic 25.0%
! AAAGATTGAATAATTGGTGA+CGG + Chr3:60166558-60166577 None:intergenic 25.0%
! AATAAGCTGAAAACAGTTTA+AGG - Chr3:60165657-60165676 MsG0380014795.01.T01:intron 25.0%
! ACATTACTTCAAATATCACT+TGG + Chr3:60166823-60166842 None:intergenic 25.0%
! ACTGAGATAAACTACAATAT+TGG + Chr3:60166422-60166441 None:intergenic 25.0%
! AGATATAAGTTTACTTGACA+CGG + Chr3:60164834-60164853 None:intergenic 25.0%
! ATGCATCACAAAATAAAGAT+TGG + Chr3:60164158-60164177 None:intergenic 25.0%
! ATTATATTTGTAAGGCTGTT+TGG + Chr3:60165703-60165722 None:intergenic 25.0%
! CATTACTTCAAATATCACTT+GGG + Chr3:60166822-60166841 None:intergenic 25.0%
! GATATATGTAATAAAAGCCT+TGG - Chr3:60166027-60166046 MsG0380014795.01.T01:intron 25.0%
! GTAAATAAAATCCAAAGATG+TGG + Chr3:60164118-60164137 None:intergenic 25.0%
! TAATATCTCATTTGCCTATT+AGG + Chr3:60166141-60166160 None:intergenic 25.0%
! TACTCACTAAATGAACAATT+TGG - Chr3:60165106-60165125 MsG0380014795.01.T01:intron 25.0%
! TTATATTTGTAAGGCTGTTT+GGG + Chr3:60165702-60165721 None:intergenic 25.0%
!!! ATCACTTCTGTGTTTTATTT+TGG - Chr3:60165815-60165834 MsG0380014795.01.T01:intron 25.0%
!!! ATGTTTCTAGTTATATAAGG+TGG + Chr3:60164077-60164096 None:intergenic 25.0%
!!! ATTTGTGTGTGTGTTTTTTA+TGG + Chr3:60164210-60164229 None:intergenic 25.0%
!!! CAAAATTTTGTTGTCGAATA+CGG + Chr3:60163940-60163959 None:intergenic 25.0%
!!! TGAGATGATTTTAATGTTGT+TGG + Chr3:60164316-60164335 None:intergenic 25.0%
AAACCTGAAGGATAATCATT+AGG + Chr3:60164435-60164454 None:intergenic 30.0%
ACTTAGTGACTTTATCATGA+AGG - Chr3:60165926-60165945 MsG0380014795.01.T01:CDS 30.0%
AGAAAGTGAAAGATGGTAAA+AGG + Chr3:60164366-60164385 None:intergenic 30.0%
AGATGGACAAAATATGTTGA+AGG + Chr3:60164867-60164886 None:intergenic 30.0%
AGGTCCAAAGATTGAATAAT+TGG + Chr3:60166564-60166583 None:intergenic 30.0%
AGTAAATGTCTTAGTTGACA+AGG - Chr3:60166359-60166378 MsG0380014795.01.T01:intron 30.0%
CAATTTCTTCATGTCCTAAT+AGG - Chr3:60166124-60166143 MsG0380014795.01.T01:intron 30.0%
CAGAAGATTATCCTAAATGA+TGG - Chr3:60166486-60166505 MsG0380014795.01.T01:intron 30.0%
CATCAGATAGCATCAAATTT+AGG + Chr3:60165458-60165477 None:intergenic 30.0%
CTAGAATATTGTAACAAACC+TGG + Chr3:60165483-60165502 None:intergenic 30.0%
CTATTAGGACATGAAGAAAT+TGG + Chr3:60166126-60166145 None:intergenic 30.0%
GACAAAATATGTTGAAGGAA+CGG + Chr3:60164862-60164881 None:intergenic 30.0%
GATAAACTAGTAATTGCACT+AGG - Chr3:60165337-60165356 MsG0380014795.01.T01:intron 30.0%
GTCACCAATTATTCAATCTT+TGG - Chr3:60166557-60166576 MsG0380014795.01.T01:intron 30.0%
GTGTGTTAGAATATATGAGA+TGG + Chr3:60164186-60164205 None:intergenic 30.0%
GTTGAATCTGAATACTTTGT+TGG - Chr3:60164961-60164980 MsG0380014795.01.T01:intron 30.0%
GTTGTCATTATCTATAAGCA+TGG - Chr3:60165582-60165601 MsG0380014795.01.T01:intron 30.0%
TATTGTAGTTTATCTCAGTC+AGG - Chr3:60166423-60166442 MsG0380014795.01.T01:intron 30.0%
TCAAAGATATACTCATGTGA+AGG - Chr3:60165956-60165975 MsG0380014795.01.T01:intron 30.0%
TCACAAAATAAAGATTGGTG+TGG + Chr3:60164153-60164172 None:intergenic 30.0%
! ACATAATGCTTTTCCTCAAT+AGG + Chr3:60164408-60164427 None:intergenic 30.0%
! ACTAATTTGTGTTGGAATGT+TGG - Chr3:60165198-60165217 MsG0380014795.01.T01:intron 30.0%
! AGTGTGATACTAATTTGTGT+TGG - Chr3:60165190-60165209 MsG0380014795.01.T01:intron 30.0%
! ATTAGCTTAGAAGACATCTT+TGG + Chr3:60166091-60166110 None:intergenic 30.0%
! TAATGATTATCCTTCAGGTT+TGG - Chr3:60164434-60164453 MsG0380014795.01.T01:intron 30.0%
! TGTTGTGTGGTTTTTCTTTT+AGG + Chr3:60163834-60163853 None:intergenic 30.0%
! TGTTGTTGGAAAATTTTGAG+AGG + Chr3:60164302-60164321 None:intergenic 30.0%
! TTAAGTTGCTTATCCAAACA+TGG + Chr3:60165507-60165526 None:intergenic 30.0%
! TTAGTGTGGACTATAAGTTA+TGG - Chr3:60165074-60165093 MsG0380014795.01.T01:intron 30.0%
!! AATTCAACCTGCTATTTCTA+GGG - Chr3:60164655-60164674 MsG0380014795.01.T01:CDS 30.0%
!! ACAAACTCTTAGTCTTAGTA+TGG - Chr3:60165754-60165773 MsG0380014795.01.T01:intron 30.0%
!! CAGGTTTGTTACAATATTCT+AGG - Chr3:60165481-60165500 MsG0380014795.01.T01:intron 30.0%
!! GTATTTGATGTTTGGTTTGA+AGG - Chr3:60165250-60165269 MsG0380014795.01.T01:intron 30.0%
!!! ACTGAATGTTTTTTTCTCAC+AGG - Chr3:60166687-60166706 MsG0380014795.01.T01:intron 30.0%
!!! ATGTTTTTTTCTCACAGGAT+TGG - Chr3:60166692-60166711 MsG0380014795.01.T01:intron 30.0%
!!! CTGTGTTTTATTTTGGATAC+AGG - Chr3:60165822-60165841 MsG0380014795.01.T01:intron 30.0%
AAACTACCAACTCATTAAGC+TGG - Chr3:60164050-60164069 MsG0380014795.01.T01:CDS 35.0%
AACATTGTAGATTACCTCTC+CGG + Chr3:60165613-60165632 None:intergenic 35.0%
AAGCCTAATGATTATCCTTC+AGG - Chr3:60164429-60164448 MsG0380014795.01.T01:intron 35.0%
AATGTCTTAGTTGACAAGGT+AGG - Chr3:60166363-60166382 MsG0380014795.01.T01:intron 35.0%
ACAATATTCTAGGCCATGTT+TGG - Chr3:60165491-60165510 MsG0380014795.01.T01:intron 35.0%
ACACCTTCAATATTCAGTGT+CGG - Chr3:60165021-60165040 MsG0380014795.01.T01:intron 35.0%
ATATGAGACTGTAACTTCCA+AGG + Chr3:60165317-60165336 None:intergenic 35.0%
ATCATGCACAAGAAATTCGT+CGG - Chr3:60165424-60165443 MsG0380014795.01.T01:intron 35.0%
CATAAAGTTGCAGCTGTTTA+TGG - Chr3:60166612-60166631 MsG0380014795.01.T01:intron 35.0%
CCTTGAATTCCAAAAGTAGA+AGG + Chr3:60165370-60165389 None:intergenic 35.0%
CTAAACAAAATTGGCATCCA+AGG + Chr3:60166047-60166066 None:intergenic 35.0%
CTGAGTCAATTCAAAAAGAC+GGG + Chr3:60165133-60165152 None:intergenic 35.0%
GCAAGAAAGAAATAAGAACC+AGG + Chr3:60164683-60164702 None:intergenic 35.0%
GCTGAGTCAATTCAAAAAGA+CGG + Chr3:60165134-60165153 None:intergenic 35.0%
GGTAAGCTATATCTTGATAG+AGG - Chr3:60166211-60166230 MsG0380014795.01.T01:intron 35.0%
GTACAAGATGTGTTCTCAAT+AGG - Chr3:60166743-60166762 MsG0380014795.01.T01:intron 35.0%
TAAACCAGAGATAGAGATAG+AGG + Chr3:60163910-60163929 None:intergenic 35.0%
TATCCTAAATGATGGTACTG+AGG - Chr3:60166494-60166513 MsG0380014795.01.T01:intron 35.0%
TTTACCTCTATCTCTATCTC+TGG - Chr3:60163903-60163922 MsG0380014795.01.T01:intron 35.0%
! AAAGAGGTGTAAACACCATA+TGG + Chr3:60164578-60164597 None:intergenic 35.0%
! AATGCTTTTCCTCAATAGGT+TGG + Chr3:60164404-60164423 None:intergenic 35.0%
! ATGCTTTTCCTCAATAGGTT+GGG + Chr3:60164403-60164422 None:intergenic 35.0%
! CTAGTTCTCTAGTTATGGTT+TGG + Chr3:60164261-60164280 None:intergenic 35.0%
! TATGGTGTTTACACCTCTTT+TGG - Chr3:60164578-60164597 MsG0380014795.01.T01:CDS 35.0%
! TTTCTGAAGATGAGAAGCAA+AGG - Chr3:60165847-60165866 MsG0380014795.01.T01:intron 35.0%
!! AGTGGATTTGTTGAAAGTAC+TGG - Chr3:60166773-60166792 MsG0380014795.01.T01:intron 35.0%
!! CTGAATATTGAAGGTGTTTC+CGG + Chr3:60165018-60165037 None:intergenic 35.0%
!! GAATTCAACCTGCTATTTCT+AGG - Chr3:60164654-60164673 MsG0380014795.01.T01:CDS 35.0%
!! GATAGAGGCATTTCTTCATT+AGG - Chr3:60166226-60166245 MsG0380014795.01.T01:intron 35.0%
!! GTATCACACTCTCTTTTTCA+AGG + Chr3:60165180-60165199 None:intergenic 35.0%
!!! CCTTCTACTTTTGGAATTCA+AGG - Chr3:60165367-60165386 MsG0380014795.01.T01:intron 35.0%
!!! GCTTAATGAGTTGGTAGTTT+TGG + Chr3:60164050-60164069 None:intergenic 35.0%
!!! GGATTTTAGTTTCAACAGCA+AGG + Chr3:60164029-60164048 None:intergenic 35.0%
ACACAAGTAGAAGCCAAAAG+AGG + Chr3:60164594-60164613 None:intergenic 40.0%
ACATCCGTGTACTTTAATCG+AGG - Chr3:60165982-60166001 MsG0380014795.01.T01:intron 40.0%
ACATTGTAGATTACCTCTCC+GGG + Chr3:60165612-60165631 None:intergenic 40.0%
ACATTGTTTGTGTCTCACCT+AGG - Chr3:60164550-60164569 MsG0380014795.01.T01:CDS 40.0%
ACCACTATGAGTGTTTAGTG+TGG - Chr3:60165060-60165079 MsG0380014795.01.T01:intron 40.0%
AGATCAGTTGCTGAACCTAT+TGG - Chr3:60164629-60164648 MsG0380014795.01.T01:CDS 40.0%
ATCTATAAGCATGGCTATCC+CGG - Chr3:60165591-60165610 MsG0380014795.01.T01:intron 40.0%
ATGGGAGAGAAAGTGAAAGA+TGG + Chr3:60164373-60164392 None:intergenic 40.0%
CACACCTCGATTAAAGTACA+CGG + Chr3:60165989-60166008 None:intergenic 40.0%
CAGCAACTGATCTAAACTCA+AGG + Chr3:60164622-60164641 None:intergenic 40.0%
CATCACAAAACCCACATCTT+TGG - Chr3:60164104-60164123 MsG0380014795.01.T01:intron 40.0%
CATCGATGCACATAACCATA+CGG - Chr3:60164715-60164734 MsG0380014795.01.T01:intron 40.0%
CCATAACTAGAGAACTAGCA+TGG - Chr3:60164263-60164282 MsG0380014795.01.T01:intron 40.0%
GAACCTCAGTACCATCATTT+AGG + Chr3:60166500-60166519 None:intergenic 40.0%
GATGAACTTCGCGAAGAAAA+TGG + Chr3:60165407-60165426 None:intergenic 40.0%
GTAAACACCATATGGTTCCT+AGG + Chr3:60164570-60164589 None:intergenic 40.0%
GTAACACATAACACACCGTA+TGG + Chr3:60164733-60164752 None:intergenic 40.0%
TACTAACATGTGTCAGAGAC+CGG - Chr3:60164996-60165015 MsG0380014795.01.T01:intron 40.0%
TCCACACTAAACACTCATAG+TGG + Chr3:60165064-60165083 None:intergenic 40.0%
TTGATGCTATCTGATGTTCC+AGG - Chr3:60165462-60165481 MsG0380014795.01.T01:intron 40.0%
TTTCCATATAAGCCAACTGC+AGG + Chr3:60165226-60165245 None:intergenic 40.0%
! AATAGGTTGGGAGCTGAAAT+GGG + Chr3:60164391-60164410 None:intergenic 40.0%
! CCATGCTAGTTCTCTAGTTA+TGG + Chr3:60164266-60164285 None:intergenic 40.0%
! GCAGGTTGAATTCTTCCAAT+AGG + Chr3:60164647-60164666 None:intergenic 40.0%
! GGATCACATCCTTCTACTTT+TGG - Chr3:60165358-60165377 MsG0380014795.01.T01:intron 40.0%
!! ATACTTTGTTGGTGTCGTGT+CGG - Chr3:60164972-60164991 MsG0380014795.01.T01:intron 40.0%
!! CAAAGATGTGGGTTTTGTGA+TGG + Chr3:60164106-60164125 None:intergenic 40.0%
!! CTTTTGCACTGTGTTGTTGT+GGG - Chr3:60165870-60165889 MsG0380014795.01.T01:CDS 40.0%
!! TTCCATTTGGTTTGCTGGTA+TGG - Chr3:60166517-60166536 MsG0380014795.01.T01:intron 40.0%
!!! CTTTTGGCTTCTACTTGTGT+CGG - Chr3:60164594-60164613 MsG0380014795.01.T01:CDS 40.0%
AAGACCAACACTTCCAGCAT+TGG - Chr3:60166796-60166815 MsG0380014795.01.T01:intron 45.0%
AATATCACTTGGGCCAATGC+TGG + Chr3:60166812-60166831 None:intergenic 45.0%
ACTAGAGAACTAGCATGGCT+TGG - Chr3:60164268-60164287 MsG0380014795.01.T01:intron 45.0%
ATAGGTCGCACACAAGTAGA+TGG + Chr3:60164884-60164903 None:intergenic 45.0%
CACTGTGAGACTGTAACTGA+TGG - Chr3:60165275-60165294 MsG0380014795.01.T01:intron 45.0%
CCAAAAATCCGACATACAGC+CGG + Chr3:60163725-60163744 None:intergenic 45.0%
CCACTGAATTCAACTCCTGT+AGG + Chr3:60165903-60165922 None:intergenic 45.0%
CCTACAGGAGTTGAATTCAG+TGG - Chr3:60165900-60165919 MsG0380014795.01.T01:CDS 45.0%
CGACCTATGAAACACTGACA+CGG - Chr3:60164896-60164915 MsG0380014795.01.T01:intron 45.0%
CGTATGGTTATGTGCATCGA+TGG + Chr3:60164717-60164736 None:intergenic 45.0%
GACCATACCAGCAAACCAAA+TGG + Chr3:60166522-60166541 None:intergenic 45.0%
GACCTATGAAACACTGACAC+GGG - Chr3:60164897-60164916 MsG0380014795.01.T01:intron 45.0%
GAGAACACATCTTGTACCGA+AGG + Chr3:60166740-60166759 None:intergenic 45.0%
GAGAGCAGACAATAGAACCT+TGG - Chr3:60165297-60165316 MsG0380014795.01.T01:intron 45.0%
GCAAGCAATGTTATCGATGG+CGG + Chr3:60163752-60163771 None:intergenic 45.0%
GCAGCAAGCAATGTTATCGA+TGG + Chr3:60163755-60163774 None:intergenic 45.0%
GCTTACCTTTGTCAACTGCT+TGG + Chr3:60166198-60166217 None:intergenic 45.0%
TATGAGACTAACCTTCCACC+AGG + Chr3:60166596-60166615 None:intergenic 45.0%
TGCTACCAAGCAGTTGACAA+AGG - Chr3:60166190-60166209 MsG0380014795.01.T01:intron 45.0%
TGTCTCACCTAGGAACCATA+TGG - Chr3:60164560-60164579 MsG0380014795.01.T01:CDS 45.0%
TTCTCAATAGGTGACTGCAG+TGG - Chr3:60166755-60166774 MsG0380014795.01.T01:intron 45.0%
TTTCAGCTCCCAACCTATTG+AGG - Chr3:60164392-60164411 MsG0380014795.01.T01:intron 45.0%
! AACCACTCTTGGTTCTCATG+AGG + Chr3:60164471-60164490 None:intergenic 45.0%
! AGGCTGTTTGGGATAGCTTA+TGG + Chr3:60165691-60165710 None:intergenic 45.0%
! CAATAGGTTGGGAGCTGAAA+TGG + Chr3:60164392-60164411 None:intergenic 45.0%
! GATGGTACTGAGGTTCCATT+TGG - Chr3:60166504-60166523 MsG0380014795.01.T01:intron 45.0%
! GCACCGACACTGAATATTGA+AGG + Chr3:60165027-60165046 None:intergenic 45.0%
! GTACCTGCAGTTGGCTTATA+TGG - Chr3:60165220-60165239 MsG0380014795.01.T01:intron 45.0%
! TGCATCGATGGCAGTACAAT+TGG + Chr3:60164705-60164724 None:intergenic 45.0%
! TGGTTCTCATGAGGCTTTGT+TGG + Chr3:60164462-60164481 None:intergenic 45.0%
!! ACAGGATTGGTGTTGATGAG+TGG - Chr3:60166705-60166724 MsG0380014795.01.T01:intron 45.0%
!! GATGTGGGTTTTGTGATGGT+TGG + Chr3:60164102-60164121 None:intergenic 45.0%
!! GCTTTTGCACTGTGTTGTTG+TGG - Chr3:60165869-60165888 MsG0380014795.01.T01:CDS 45.0%
!! TGAGGTTCCATTTGGTTTGC+TGG - Chr3:60166512-60166531 MsG0380014795.01.T01:intron 45.0%
!! TTTGTTGGTGCCAAACCTGA+AGG + Chr3:60164447-60164466 None:intergenic 45.0%
AAAATCCGACATACAGCCGG+TGG + Chr3:60163722-60163741 None:intergenic 50.0%
AGAGTGGTTGTGCTTGGTTC+AGG - Chr3:60164482-60164501 MsG0380014795.01.T01:intron 50.0%
AGCCTCATGAGAACCAAGAG+TGG - Chr3:60164466-60164485 MsG0380014795.01.T01:intron 50.0%
ATGAAACACTGACACGGGCA+TGG - Chr3:60164902-60164921 MsG0380014795.01.T01:intron 50.0%
CTGCAGACTCATGAAGGGTT+TGG - Chr3:60164513-60164532 MsG0380014795.01.T01:intron 50.0%
GAACCAAGAGTGGTTGTGCT+TGG - Chr3:60164476-60164495 MsG0380014795.01.T01:intron 50.0%
GAACCAAGCACAACCACTCT+TGG + Chr3:60164482-60164501 None:intergenic 50.0%
GGAATGTTGGTACCTGCAGT+TGG - Chr3:60165211-60165230 MsG0380014795.01.T01:intron 50.0%
GGTGGACCAGCTTAATGAGT+TGG + Chr3:60164059-60164078 None:intergenic 50.0%
TATGGCAGCACATATGCCAC+CGG - Chr3:60163703-60163722 MsG0380014795.01.T01:CDS 50.0%
TGAGTGGCTTCGTGTTCCTT+CGG - Chr3:60166721-60166740 MsG0380014795.01.T01:intron 50.0%
TGCCCGTGTCAGTGTTTCAT+AGG + Chr3:60164902-60164921 None:intergenic 50.0%
TGGTTGTGCTTGGTTCAGGT+GGG - Chr3:60164486-60164505 MsG0380014795.01.T01:intron 50.0%
TTTGGACCTCCAAAAGCTCC+TGG - Chr3:60166575-60166594 MsG0380014795.01.T01:intron 50.0%
! AACCTTCCACCAGGAGCTTT+TGG + Chr3:60166587-60166606 None:intergenic 50.0%
! ATATGCCACCGGCTGTATGT+CGG - Chr3:60163714-60163733 MsG0380014795.01.T01:CDS 50.0%
! CCGGCTGTATGTCGGATTTT+TGG - Chr3:60163722-60163741 MsG0380014795.01.T01:CDS 50.0%
! TCAGGAGTTCGTCTTGTTCG+TGG - Chr3:60166441-60166460 MsG0380014795.01.T01:intron 50.0%
! TTGCACTGTGTTGTTGTGGG+AGG - Chr3:60165873-60165892 MsG0380014795.01.T01:CDS 50.0%
!! GGTTTGCTGGTATGGTCTAC+TGG - Chr3:60166525-60166544 MsG0380014795.01.T01:intron 50.0%
CCAGGCTCCCTAGAAATAGC+AGG + Chr3:60164665-60164684 None:intergenic 55.0%
CTCCAAAAGCTCCTGGTGGA+AGG - Chr3:60166582-60166601 MsG0380014795.01.T01:intron 55.0%
CTGGTATGGTCTACTGGCGT+TGG - Chr3:60166531-60166550 MsG0380014795.01.T01:intron 55.0%
GCTGGCTGCAGACTCATGAA+GGG - Chr3:60164508-60164527 MsG0380014795.01.T01:intron 55.0%
GTGGTTGTGCTTGGTTCAGG+TGG - Chr3:60164485-60164504 MsG0380014795.01.T01:intron 55.0%
TAAGCATGGCTATCCCGGAG+AGG - Chr3:60165596-60165615 MsG0380014795.01.T01:intron 55.0%
! CACTGTGTTGTTGTGGGAGG+TGG - Chr3:60165876-60165895 MsG0380014795.01.T01:CDS 55.0%
! CTTCCACCAGGAGCTTTTGG+AGG + Chr3:60166584-60166603 None:intergenic 55.0%
! TGGGCCAATGCTGGAAGTGT+TGG + Chr3:60166803-60166822 None:intergenic 55.0%
!! CCTGCTATTTCTAGGGAGCC+TGG - Chr3:60164662-60164681 MsG0380014795.01.T01:CDS 55.0%
GGACCTCCAAAAGCTCCTGG+TGG - Chr3:60166578-60166597 MsG0380014795.01.T01:intron 60.0%
GTTGTGGGAGGTGGTCCTAC+AGG - Chr3:60165885-60165904 MsG0380014795.01.T01:CDS 60.0%
TGTGCTTGGTTCAGGTGGGC+TGG - Chr3:60164490-60164509 MsG0380014795.01.T01:intron 60.0%
! GGCTGGCTGCAGACTCATGA+AGG - Chr3:60164507-60164526 MsG0380014795.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 60163695 60166844 60163695 ID=MsG0380014795.01;Name=MsG0380014795.01
Chr3 mRNA 60163695 60166844 60163695 ID=MsG0380014795.01.T01;Parent=MsG0380014795.01;Name=MsG0380014795.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.2|0.16|0.83|1|1|6|0|202
Chr3 exon 60166812 60166844 60166812 ID=MsG0380014795.01.T01:exon:14199;Parent=MsG0380014795.01.T01
Chr3 exon 60165856 60165967 60165856 ID=MsG0380014795.01.T01:exon:14198;Parent=MsG0380014795.01.T01
Chr3 exon 60164550 60164695 60164550 ID=MsG0380014795.01.T01:exon:14197;Parent=MsG0380014795.01.T01
Chr3 exon 60164328 60164393 60164328 ID=MsG0380014795.01.T01:exon:14196;Parent=MsG0380014795.01.T01
Chr3 exon 60163983 60164098 60163983 ID=MsG0380014795.01.T01:exon:14195;Parent=MsG0380014795.01.T01
Chr3 exon 60163695 60163830 60163695 ID=MsG0380014795.01.T01:exon:14194;Parent=MsG0380014795.01.T01
Chr3 CDS 60166812 60166844 60166812 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Chr3 CDS 60165856 60165967 60165856 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Chr3 CDS 60164550 60164695 60164550 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Chr3 CDS 60164328 60164393 60164328 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Chr3 CDS 60163983 60164098 60163983 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Chr3 CDS 60163695 60163830 60163695 ID=MsG0380014795.01.T01:cds;Parent=MsG0380014795.01.T01
Gene Sequence

>MsG0380014795.01.T01

ATGTCGGATATGGCAGCACATATGCCACCGGCTGAACCATATGGTGTTTACACCTCTTTTGGCTTCTACTTGTGTCGGAACCTTGAGTTTAGATCAGTTGCTGAACCTATTGGAAGAATTCAACCTGCTATTTCTAGGGAGCCTGGAATTTCTGAAGATGAGAAGCAAAGGCTTTTGCACTGTGTTGTTGTGGGAGGTGGTCCTACAGGAGTTGAATTCAGTGGTGAACTTAGTGACTTTATCATGAAGGATGTTCGTCAAAGATATACTCATGTGAAGGATTACATCCGTGCAAATGAGATATTATCTTCTTTTGATGATCGACTCAGACTCTATGCTACCAAGCAGTTGACAAAGTCAGGAGTTCGTCTTGTTCGTGGCATTGTGAAAGATGTTAAAGCTCAGAAGATTATCCTAAATGATGGTACTGAGGTTCCATTTGGTTTGCTGGTATGGTCTACTGGCGTTGGTCCGATTGGTGTTGATGAGTGGCTTCGTGTTCCTTCGGTACAAGATGTGTTCTCAATAGGTGACTGCAGTGGATTTGTTGAAAGTACTGGAAGACCAACACTTCCAGCATTGGCCCAAGTGATATTTGAAGTAATGTAA

Protein sequence

>MsG0380014795.01.T01

MSDMAAHMPPAEPYGVYTSFGFYLCRNLEFRSVAEPIGRIQPAISREPGISEDEKQRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYTHVKDYIRANEILSSFDDRLRLYATKQLTKSGVRLVRGIVKDVKAQKIILNDGTEVPFGLLVWSTGVGPIGVDEWLRVPSVQDVFSIGDCSGFVESTGRPTLPALAQVIFEVM*