AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003442.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003442.01.T01 MTR_1g061850 97.046 237 6 1 1 236 21 257 9.56e-171 470
MsG0180003442.01.T01 MTR_3g115970 39.326 178 80 4 69 222 52 225 3.38e-28 107
MsG0180003442.01.T01 MTR_5g008680 37.190 121 63 4 107 223 389 500 6.46e-16 76.6
MsG0180003442.01.T01 MTR_4g094785 39.200 125 55 5 110 221 122 238 1.30e-14 71.2
MsG0180003442.01.T01 MTR_4g032680 34.711 121 65 5 107 222 549 660 1.49e-13 69.7
MsG0180003442.01.T01 MTR_4g032680 34.711 121 65 5 107 222 758 869 1.63e-13 69.7
MsG0180003442.01.T01 MTR_4g032680 34.711 121 65 5 107 222 758 869 1.63e-13 69.7
MsG0180003442.01.T01 MTR_4g032680 34.711 121 65 5 107 222 649 760 1.89e-13 69.7
MsG0180003442.01.T01 MTR_8g080980 38.596 114 59 5 111 221 37 142 2.44e-13 69.3
MsG0180003442.01.T01 MTR_8g012340 41.053 95 46 4 129 221 58 144 3.71e-13 68.6
MsG0180003442.01.T01 MTR_7g053470 37.895 95 49 4 129 221 52 138 1.66e-12 66.6
MsG0180003442.01.T01 MTR_1g061080 36.752 117 65 4 100 210 65 178 2.39e-12 64.7
MsG0180003442.01.T01 MTR_8g038785 46.269 67 32 2 156 221 213 276 9.85e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003442.01.T01 AT3G10060 68.584 226 67 2 11 236 9 230 2.77e-106 306
MsG0180003442.01.T01 AT1G20810 31.278 227 123 5 28 226 8 229 2.63e-25 99.8
MsG0180003442.01.T01 AT5G05420 38.889 108 47 2 122 223 49 143 4.96e-17 75.5
MsG0180003442.01.T01 AT4G25340 36.885 122 63 5 107 223 365 477 3.13e-15 74.7
MsG0180003442.01.T01 AT3G12340 38.525 122 61 5 107 223 266 378 1.09e-14 72.8
MsG0180003442.01.T01 AT3G12340 38.525 122 61 5 107 223 266 378 1.09e-14 72.8
MsG0180003442.01.T01 AT3G12340 38.525 122 61 5 107 223 387 499 1.20e-14 73.2
MsG0180003442.01.T01 AT5G48570 41.053 95 46 4 129 221 65 151 2.38e-14 72.4
MsG0180003442.01.T01 AT3G25230 37.607 117 62 5 107 220 34 142 5.83e-13 68.2
MsG0180003442.01.T01 AT3G25230 37.607 117 62 5 107 220 34 142 6.16e-13 68.2
MsG0180003442.01.T01 AT4G19830 30.702 114 66 4 105 210 79 187 4.34e-12 63.9
MsG0180003442.01.T01 AT1G18170 29.193 161 96 5 79 226 91 246 1.82e-11 62.4
MsG0180003442.01.T01 AT1G73655 32.759 116 72 2 109 219 110 224 3.28e-11 61.6

Find 0 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATATTCAATTTATG+TGG - Chr1:62375431-62375450 None:intergenic 10.0%
!!! CAAAATTTAACATTTTAAAT+GGG - Chr1:62372693-62372712 None:intergenic 10.0%
!!! TCAAAATTTAACATTTTAAA+TGG - Chr1:62372694-62372713 None:intergenic 10.0%
!!! TTTTTTATTTATTTATGATG+TGG - Chr1:62372409-62372428 None:intergenic 10.0%
!! AAAACTAAAGTAAAAAGATA+AGG - Chr1:62373599-62373618 None:intergenic 15.0%
!! GTTAAAATTATAAGATTCTT+AGG + Chr1:62372287-62372306 MsG0180003442.01.T01:intron 15.0%
!!! ATGTTATTTGAATATCAATT+TGG + Chr1:62372461-62372480 MsG0180003442.01.T01:intron 15.0%
!!! ATTATTTCTAAATTCTAAGT+GGG - Chr1:62374441-62374460 None:intergenic 15.0%
!!! TGTTATTTGAATATCAATTT+GGG + Chr1:62372462-62372481 MsG0180003442.01.T01:intron 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG + Chr1:62373598-62373617 MsG0180003442.01.T01:intron 15.0%
!! AAAATCATGGTTAAAATTTG+CGG - Chr1:62372569-62372588 None:intergenic 20.0%
!! AAATCATGAATATCAGTAAA+TGG + Chr1:62374923-62374942 MsG0180003442.01.T01:intron 20.0%
!! AACTCATAACAATCAATTAA+AGG - Chr1:62374592-62374611 None:intergenic 20.0%
!! ATCCATAATCAATAAATGTA+GGG - Chr1:62375812-62375831 None:intergenic 20.0%
!! ATTTAATCGTTAGAAAATCA+TGG - Chr1:62372582-62372601 None:intergenic 20.0%
!! GTTAATACCATTAAAATTTG+TGG + Chr1:62372632-62372651 MsG0180003442.01.T01:intron 20.0%
!! TATATGTAGTATCAAATTAC+AGG - Chr1:62375362-62375381 None:intergenic 20.0%
!! TTAAAGATGCAAAATTTACA+AGG + Chr1:62375097-62375116 MsG0180003442.01.T01:intron 20.0%
!! TTTACAACAAAAGTTCAAAT+AGG + Chr1:62372081-62372100 MsG0180003442.01.T01:CDS 20.0%
!!! AAAGTTTTGAAATCATTTTC+AGG - Chr1:62372825-62372844 None:intergenic 20.0%
!!! AACTTTGACAACATTTTAAA+TGG + Chr1:62372491-62372510 MsG0180003442.01.T01:intron 20.0%
!!! AATTATGCTTTTCTTGTTTT+TGG + Chr1:62372771-62372790 MsG0180003442.01.T01:intron 20.0%
!!! AGAATGATTATTTCTTTTGA+TGG - Chr1:62375675-62375694 None:intergenic 20.0%
!!! CATTATTTCTAAATTCTAAG+TGG - Chr1:62374442-62374461 None:intergenic 20.0%
!!! GTAGTTAATTTCAATGATTT+TGG + Chr1:62376013-62376032 MsG0180003442.01.T01:intron 20.0%
!!! TGTAAATTTTGCATCTTTAA+AGG - Chr1:62375097-62375116 None:intergenic 20.0%
!!! TTGAGATAAATGTATTTCTA+GGG - Chr1:62373002-62373021 None:intergenic 20.0%
!!! TTGTTAACCACAAATTTTAA+TGG - Chr1:62372642-62372661 None:intergenic 20.0%
!!! TTTAAAATGTTGTCAAAGTT+AGG - Chr1:62372491-62372510 None:intergenic 20.0%
! AACCATTAGAAAAGATTTAG+AGG + Chr1:62374348-62374367 MsG0180003442.01.T01:intron 25.0%
! AAGTAAAAAGATAAGGACTT+AGG - Chr1:62373592-62373611 None:intergenic 25.0%
! AATGAAATCAACAAGAAAAG+CGG - Chr1:62373117-62373136 None:intergenic 25.0%
! ACTAATGAAACAAAAGTGAT+AGG - Chr1:62373043-62373062 None:intergenic 25.0%
! AGTAAAAAGATAAGGACTTA+GGG - Chr1:62373591-62373610 None:intergenic 25.0%
! AGTATATAAGATGCAGAATT+AGG - Chr1:62375838-62375857 None:intergenic 25.0%
! ATGAAATTTGTAACAGAACA+AGG - Chr1:62374901-62374920 None:intergenic 25.0%
! ATTTGTAAAGACATAGAGAT+TGG - Chr1:62372158-62372177 None:intergenic 25.0%
! GATCCATAATCAATAAATGT+AGG - Chr1:62375813-62375832 None:intergenic 25.0%
! GTTGAGATAAATGTATTTCT+AGG - Chr1:62373003-62373022 None:intergenic 25.0%
! TAAGATGTATAAAGCTAGTT+GGG + Chr1:62373140-62373159 MsG0180003442.01.T01:intron 25.0%
! TAGTACACTAGTATTTAGTT+AGG + Chr1:62373059-62373078 MsG0180003442.01.T01:intron 25.0%
! TATTGTTATGGGAAAATCTA+CGG - Chr1:62373549-62373568 None:intergenic 25.0%
! TCCATAATCAATAAATGTAG+GGG - Chr1:62375811-62375830 None:intergenic 25.0%
! TCTATGTCTTTACAAATTGA+AGG + Chr1:62372161-62372180 MsG0180003442.01.T01:CDS 25.0%
! TGTAGTTGAAATACCTAAAA+TGG + Chr1:62372607-62372626 MsG0180003442.01.T01:intron 25.0%
! TTAAGATGTATAAAGCTAGT+TGG + Chr1:62373139-62373158 MsG0180003442.01.T01:intron 25.0%
!! ATTTTCACCTTTGTAACTTT+CGG + Chr1:62375892-62375911 MsG0180003442.01.T01:intron 25.0%
!! CACGATGTATAAATTTTCTA+AGG + Chr1:62374691-62374710 MsG0180003442.01.T01:intron 25.0%
!! TACCAACTTTTCTACTATAT+AGG - Chr1:62374200-62374219 None:intergenic 25.0%
!! TCTTTTTAGATATCTAGAGA+CGG - Chr1:62375641-62375660 None:intergenic 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - Chr1:62374341-62374360 None:intergenic 25.0%
!!! AAAATTAGTTCTTTTTCTGC+CGG + Chr1:62375745-62375764 MsG0180003442.01.T01:intron 25.0%
!!! ACACTTAGTTTTCATTGATT+TGG + Chr1:62373385-62373404 MsG0180003442.01.T01:intron 25.0%
!!! GAAATCATTTTCAGGAATTT+TGG - Chr1:62372817-62372836 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + Chr1:62374206-62374225 MsG0180003442.01.T01:intron 25.0%
AAGTCTTCCATGTATAAACA+AGG + Chr1:62374615-62374634 MsG0180003442.01.T01:intron 30.0%
AATGAACAACTACATTGAAC+TGG + Chr1:62374965-62374984 MsG0180003442.01.T01:intron 30.0%
AGATTCACTATGTTGCTAAA+TGG + Chr1:62374477-62374496 MsG0180003442.01.T01:intron 30.0%
AGGAAATGTCTTAAAAGGTT+TGG + Chr1:62374809-62374828 MsG0180003442.01.T01:CDS 30.0%
AGTTGAAATACCTAAAATGG+TGG + Chr1:62372610-62372629 MsG0180003442.01.T01:intron 30.0%
ATAACAATAAGACTACACCA+AGG + Chr1:62373560-62373579 MsG0180003442.01.T01:intron 30.0%
ATAGTATGACTCTTGTGATA+TGG - Chr1:62375396-62375415 None:intergenic 30.0%
ATATACTTACTTGAGACCAT+TGG - Chr1:62372850-62372869 None:intergenic 30.0%
ATGAAATCAACAAGAAAAGC+GGG - Chr1:62373116-62373135 None:intergenic 30.0%
CACCTATATAGTAGAAAAGT+TGG + Chr1:62374195-62374214 MsG0180003442.01.T01:intron 30.0%
CTCTAATTGATCAAATTCCT+TGG + Chr1:62375497-62375516 MsG0180003442.01.T01:intron 30.0%
GCAAAATTTACAAGGAAGTT+GGG + Chr1:62375105-62375124 MsG0180003442.01.T01:intron 30.0%
GTTCTATCAAAAACCATAGT+TGG - Chr1:62374388-62374407 None:intergenic 30.0%
TAACAATAAGACTACACCAA+GGG + Chr1:62373561-62373580 MsG0180003442.01.T01:intron 30.0%
TAACTAACTAACATGTTGTG+AGG - Chr1:62372211-62372230 None:intergenic 30.0%
TATACTTACTTGAGACCATT+GGG - Chr1:62372849-62372868 None:intergenic 30.0%
TGAAATGTAACTTCAGCAAA+AGG + Chr1:62373789-62373808 MsG0180003442.01.T01:intron 30.0%
TGCAAAATTTACAAGGAAGT+TGG + Chr1:62375104-62375123 MsG0180003442.01.T01:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + Chr1:62374273-62374292 MsG0180003442.01.T01:intron 30.0%
TGTCTTTACAAATTGAAGGA+AGG + Chr1:62372165-62372184 MsG0180003442.01.T01:CDS 30.0%
TTGATCAATTAGAGTTGTTG+TGG - Chr1:62375491-62375510 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - Chr1:62374272-62374291 None:intergenic 30.0%
TTTCTAAATTCTAAGTGGGT+CGG - Chr1:62374437-62374456 None:intergenic 30.0%
! ATGGTATTAACCACCATTTT+AGG - Chr1:62372623-62372642 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - Chr1:62374353-62374372 None:intergenic 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - Chr1:62374331-62374350 None:intergenic 30.0%
! TATTTTATGTGATCAGTTGC+TGG + Chr1:62372326-62372345 MsG0180003442.01.T01:intron 30.0%
! TCCCCTACATTTATTGATTA+TGG + Chr1:62375807-62375826 MsG0180003442.01.T01:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + Chr1:62374392-62374411 MsG0180003442.01.T01:intron 30.0%
! TTAGCCTTCAACAATCTTTA+CGG - Chr1:62376053-62376072 None:intergenic 30.0%
! TTCTCCGTAATTTTGTACTA+TGG - Chr1:62373891-62373910 None:intergenic 30.0%
!! AAAATTTTAGCCGAGTTACT+TGG - Chr1:62374564-62374583 None:intergenic 30.0%
!! TGGTGTAGTCTTATTGTTAT+GGG - Chr1:62373560-62373579 None:intergenic 30.0%
!! TGGTTCTACAACAGTTTTAT+TGG - Chr1:62372138-62372157 None:intergenic 30.0%
!! TTGGTGTAGTCTTATTGTTA+TGG - Chr1:62373561-62373580 None:intergenic 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + Chr1:62373391-62373410 MsG0180003442.01.T01:intron 30.0%
!!! TTCTACAACAGTTTTATTGG+AGG - Chr1:62372135-62372154 None:intergenic 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG + Chr1:62373610-62373629 MsG0180003442.01.T01:intron 30.0%
AAATTTACAAGGAAGTTGGG+AGG + Chr1:62375108-62375127 MsG0180003442.01.T01:intron 35.0%
AACTCTGAGTTATATGAGTC+AGG - Chr1:62373319-62373338 None:intergenic 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - Chr1:62373998-62374017 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG + Chr1:62374276-62374295 MsG0180003442.01.T01:intron 35.0%
AAGTCCATTTGGGTAAGTAA+TGG + Chr1:62375951-62375970 MsG0180003442.01.T01:intron 35.0%
AATTTACAAGGAAGTTGGGA+GGG + Chr1:62375109-62375128 MsG0180003442.01.T01:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + Chr1:62374360-62374379 MsG0180003442.01.T01:intron 35.0%
AGCTATCCAGGATATATATG+AGG + Chr1:62373487-62373506 MsG0180003442.01.T01:intron 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + Chr1:62374002-62374021 MsG0180003442.01.T01:intron 35.0%
AGGTCCAAATTTAACTGTCT+AGG - Chr1:62375077-62375096 None:intergenic 35.0%
AGTCAGGTTAAAAGAGATAG+AGG + Chr1:62374301-62374320 MsG0180003442.01.T01:intron 35.0%
AGTCCCTAGACAGTTAAATT+TGG + Chr1:62375070-62375089 MsG0180003442.01.T01:intron 35.0%
ATATCTAAACCGCGTAACTT+GGG - Chr1:62373861-62373880 None:intergenic 35.0%
ATCCTGGATAGCTCTTATAT+AGG - Chr1:62373480-62373499 None:intergenic 35.0%
ATGACTAGTAGACAAGGAAT+GGG + Chr1:62374515-62374534 MsG0180003442.01.T01:CDS 35.0%
CAGTTAAACTGATTGAACCT+TGG - Chr1:62375578-62375597 None:intergenic 35.0%
CCATCAAACAAAGTCCATTT+GGG + Chr1:62375941-62375960 MsG0180003442.01.T01:CDS 35.0%
CTATCCAGGATATATATGAG+GGG + Chr1:62373489-62373508 MsG0180003442.01.T01:intron 35.0%
CTGAATTGTCTTAACAACAC+AGG + Chr1:62372044-62372063 MsG0180003442.01.T01:intron 35.0%
CTTAAATTATTGCAGCCCTA+CGG + Chr1:62374762-62374781 MsG0180003442.01.T01:intron 35.0%
CTTGTGATATGGAGCTAAAA+TGG - Chr1:62375385-62375404 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + Chr1:62374220-62374239 MsG0180003442.01.T01:intron 35.0%
GAAACCATTACTTACCCAAA+TGG - Chr1:62375958-62375977 None:intergenic 35.0%
GAAGTTACTTGTGAAGAGAT+TGG - Chr1:62371955-62371974 None:intergenic 35.0%
GACAAAACTCTGATATGTTC+AGG + Chr1:62373173-62373192 MsG0180003442.01.T01:intron 35.0%
GATTTCAAAACTTTGCCCAA+TGG + Chr1:62372831-62372850 MsG0180003442.01.T01:CDS 35.0%
GCTATCCAGGATATATATGA+GGG + Chr1:62373488-62373507 MsG0180003442.01.T01:intron 35.0%
GGGTCCATAGTACAAAATTA+CGG + Chr1:62373884-62373903 MsG0180003442.01.T01:intron 35.0%
GGTCCAAATTTAACTGTCTA+GGG - Chr1:62375076-62375095 None:intergenic 35.0%
GGTTCAATCAGTTTAACTGA+AGG + Chr1:62375579-62375598 MsG0180003442.01.T01:intron 35.0%
GTCTTAAAAGGTTTGGATGT+AGG + Chr1:62374816-62374835 MsG0180003442.01.T01:CDS 35.0%
GTTCAGGTACTATGATTTGA+AGG + Chr1:62373189-62373208 MsG0180003442.01.T01:intron 35.0%
TATCCAGGATATATATGAGG+GGG + Chr1:62373490-62373509 MsG0180003442.01.T01:intron 35.0%
TCACTATGTTGCTAAATGGA+GGG + Chr1:62374481-62374500 MsG0180003442.01.T01:CDS 35.0%
TCTGCAAAATGCATACATCT+CGG - Chr1:62373656-62373675 None:intergenic 35.0%
TGCTAACTCAGAAATGGAAA+TGG - Chr1:62375531-62375550 None:intergenic 35.0%
TGGAAATGGTAATTAAGCCA+AGG - Chr1:62375517-62375536 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + Chr1:62374215-62374234 MsG0180003442.01.T01:intron 35.0%
TTACGCGGTTTAGATATCTT+GGG + Chr1:62373864-62373883 MsG0180003442.01.T01:intron 35.0%
TTAGATATCTAGAGACGGAA+GGG - Chr1:62375636-62375655 None:intergenic 35.0%
TTCACCTCTATTGTTGCATT+TGG - Chr1:62375332-62375351 None:intergenic 35.0%
TTCACTATGTTGCTAAATGG+AGG + Chr1:62374480-62374499 MsG0180003442.01.T01:CDS 35.0%
TTGCATTTGGAGGAATTTCT+TGG - Chr1:62375319-62375338 None:intergenic 35.0%
TTTAGATATCTAGAGACGGA+AGG - Chr1:62375637-62375656 None:intergenic 35.0%
TTTCCATTTCTGAGTTAGCA+AGG + Chr1:62375531-62375550 MsG0180003442.01.T01:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + Chr1:62373989-62374008 MsG0180003442.01.T01:intron 35.0%
! ATAGGTTCTGTTTCTTCTCT+AGG - Chr1:62373025-62373044 None:intergenic 35.0%
! ATTTAGTTGACTTTCTGCAG+CGG + Chr1:62375249-62375268 MsG0180003442.01.T01:intron 35.0%
! GAATTTTCTACCCTCAACTT+TGG + Chr1:62372907-62372926 MsG0180003442.01.T01:intron 35.0%
! TAGAGTTGTTGTGGTGTTAA+TGG - Chr1:62375482-62375501 None:intergenic 35.0%
! TCAATGATTTTGGATTCTGC+AGG + Chr1:62376023-62376042 MsG0180003442.01.T01:intron 35.0%
!! GAACATGCCTTGTTTATACA+TGG - Chr1:62374625-62374644 None:intergenic 35.0%
AACTTCAGCAAAAGGAGAAG+TGG + Chr1:62373797-62373816 MsG0180003442.01.T01:intron 40.0%
ACCTCTATTGTTGCATTTGG+AGG - Chr1:62375329-62375348 None:intergenic 40.0%
ACCTTCATGACTAGTAGACA+AGG + Chr1:62374509-62374528 MsG0180003442.01.T01:CDS 40.0%
ACTGCCGTAAAGATTGTTGA+AGG + Chr1:62376046-62376065 MsG0180003442.01.T01:CDS 40.0%
ACTTCAGCAAAAGGAGAAGT+GGG + Chr1:62373798-62373817 MsG0180003442.01.T01:intron 40.0%
AGAGAGTAAAGTAAGCGTAG+CGG + Chr1:62374084-62374103 MsG0180003442.01.T01:intron 40.0%
ATATCATACCCCAAGTTACG+CGG + Chr1:62373849-62373868 MsG0180003442.01.T01:intron 40.0%
ATGTGCATCTGAACTCATGT+TGG + Chr1:62375770-62375789 MsG0180003442.01.T01:intron 40.0%
CACTATGTTGCTAAATGGAG+GGG + Chr1:62374482-62374501 MsG0180003442.01.T01:CDS 40.0%
CATGACTAGTAGACAAGGAA+TGG + Chr1:62374514-62374533 MsG0180003442.01.T01:CDS 40.0%
CGCTTACTTTACTCTCTTGT+TGG - Chr1:62374081-62374100 None:intergenic 40.0%
GATATCTAAACCGCGTAACT+TGG - Chr1:62373862-62373881 None:intergenic 40.0%
GATGAGTGGTAAGATTAGAC+AGG + Chr1:62374126-62374145 MsG0180003442.01.T01:intron 40.0%
GCCATCAAACAAAGTCCATT+TGG + Chr1:62375940-62375959 MsG0180003442.01.T01:CDS 40.0%
GCGAGAGGAAATGTCTTAAA+AGG + Chr1:62374804-62374823 MsG0180003442.01.T01:CDS 40.0%
GCTTTCCACAAAATCTCTCT+AGG - Chr1:62373431-62373450 None:intergenic 40.0%
GTGGTAAGATTAGACAGGAT+AGG + Chr1:62374131-62374150 MsG0180003442.01.T01:intron 40.0%
GTTACGCGGTTTAGATATCT+TGG + Chr1:62373863-62373882 MsG0180003442.01.T01:intron 40.0%
TAGATATCTAGAGACGGAAG+GGG - Chr1:62375635-62375654 None:intergenic 40.0%
TATCTAAACCGCGTAACTTG+GGG - Chr1:62373860-62373879 None:intergenic 40.0%
TATGATTTGAAGGTTGCCGA+TGG + Chr1:62373199-62373218 MsG0180003442.01.T01:CDS 40.0%
TCACCTTGCTAACTCAGAAA+TGG - Chr1:62375537-62375556 None:intergenic 40.0%
TCCTCCAAATGCAACAATAG+AGG + Chr1:62375325-62375344 MsG0180003442.01.T01:CDS 40.0%
TCCTTGTCTACTAGTCATGA+AGG - Chr1:62374513-62374532 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG - Chr1:62374263-62374282 None:intergenic 40.0%
TGAGTTCAGATGCACATAAC+CGG - Chr1:62375767-62375786 None:intergenic 40.0%
TGCATCATCGTATTCAAGCT+GGG + Chr1:62373924-62373943 MsG0180003442.01.T01:intron 40.0%
TGCCTATATAAGAGCTATCC+AGG + Chr1:62373475-62373494 MsG0180003442.01.T01:intron 40.0%
TTACCACTGACCAAAGTTGA+GGG - Chr1:62372920-62372939 None:intergenic 40.0%
! CAATGAGTTGGATCCAACTA+TGG + Chr1:62374372-62374391 MsG0180003442.01.T01:intron 40.0%
! CCCAAATGGACTTTGTTTGA+TGG - Chr1:62375944-62375963 None:intergenic 40.0%
! GAGTACCTAGAGAGATTTTG+TGG + Chr1:62373423-62373442 MsG0180003442.01.T01:intron 40.0%
!!! TTTGGTTTTCTGCAGCTAAG+AGG + Chr1:62372789-62372808 MsG0180003442.01.T01:intron 40.0%
AAGCCCCCTCATATATATCC+TGG - Chr1:62373496-62373515 None:intergenic 45.0%
ACCATTAGAGAGAGAGAGAG+TGG + Chr1:62374166-62374185 MsG0180003442.01.T01:intron 45.0%
ACCGGCAATGTTGTATGGTA+CGG + Chr1:62374036-62374055 MsG0180003442.01.T01:intron 45.0%
ACGGTACGATCCAAGTAACT+CGG + Chr1:62374551-62374570 MsG0180003442.01.T01:intron 45.0%
ACTCTGTCTTGCTTCTACTC+AGG - Chr1:62373766-62373785 None:intergenic 45.0%
AGAGTGCAATGAAGGAGTGA+AGG - Chr1:62371927-62371946 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + Chr1:62374285-62374304 MsG0180003442.01.T01:intron 45.0%
AGGTTTGGATGTAGGAGTAG+AGG + Chr1:62374824-62374843 MsG0180003442.01.T01:CDS 45.0%
AGTAGACAAGGAATGGGTGT+TGG + Chr1:62374521-62374540 MsG0180003442.01.T01:CDS 45.0%
ATCATCGTATTCAAGCTGGG+TGG + Chr1:62373927-62373946 MsG0180003442.01.T01:intron 45.0%
ATCTCCAACTTTCACCTCCA+AGG - Chr1:62373828-62373847 None:intergenic 45.0%
ATTAGAGAGAGAGAGAGTGG+GGG + Chr1:62374169-62374188 MsG0180003442.01.T01:intron 45.0%
CAAGGTGAGTTTGTCTCCTT+TGG + Chr1:62375549-62375568 MsG0180003442.01.T01:intron 45.0%
CATTAGAGAGAGAGAGAGTG+GGG + Chr1:62374168-62374187 MsG0180003442.01.T01:intron 45.0%
CCATTAGAGAGAGAGAGAGT+GGG + Chr1:62374167-62374186 MsG0180003442.01.T01:intron 45.0%
CTATCGGATAGCAGTCAAAC+CGG + Chr1:62374018-62374037 MsG0180003442.01.T01:intron 45.0%
CTGCAGTCCGAAAGTTACAA+AGG - Chr1:62375902-62375921 None:intergenic 45.0%
CTTATCGCACAAAACACCTG+AGG - Chr1:62373969-62373988 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - Chr1:62374262-62374281 None:intergenic 45.0%
GAACTCATGTTGGCAGGAAA+AGG + Chr1:62375780-62375799 MsG0180003442.01.T01:intron 45.0%
GAAGAATGTGAACAGCTGCA+TGG - Chr1:62372113-62372132 None:intergenic 45.0%
GGTTTGGATGTAGGAGTAGA+GGG + Chr1:62374825-62374844 MsG0180003442.01.T01:CDS 45.0%
GTCAAACCGGCAATGTTGTA+TGG + Chr1:62374031-62374050 MsG0180003442.01.T01:intron 45.0%
GTGCATCATCGTATTCAAGC+TGG + Chr1:62373923-62373942 MsG0180003442.01.T01:intron 45.0%
GTTACCACTGACCAAAGTTG+AGG - Chr1:62372921-62372940 None:intergenic 45.0%
TCCGTACCATACAACATTGC+CGG - Chr1:62374040-62374059 None:intergenic 45.0%
TCGCCTACATCAAATCCGTA+GGG - Chr1:62374780-62374799 None:intergenic 45.0%
TCTACCTTGGAGGTGAAAGT+TGG + Chr1:62373821-62373840 MsG0180003442.01.T01:intron 45.0%
TGAACTTGCCTATGGAAGCA+GGG + Chr1:62375289-62375308 MsG0180003442.01.T01:CDS 45.0%
TGCAATGAAGGAGTGAAGGA+TGG - Chr1:62371923-62371942 None:intergenic 45.0%
TGGAGTCTATGCATGTGATG+TGG + Chr1:62372346-62372365 MsG0180003442.01.T01:CDS 45.0%
TGTAACTTTCGGACTGCAGA+TGG + Chr1:62375903-62375922 MsG0180003442.01.T01:intron 45.0%
TGTTGTATGGTACGGAGTGT+TGG + Chr1:62374044-62374063 MsG0180003442.01.T01:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + Chr1:62373936-62373955 MsG0180003442.01.T01:intron 45.0%
TTCGCCTACATCAAATCCGT+AGG - Chr1:62374781-62374800 None:intergenic 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + Chr1:62373950-62373969 MsG0180003442.01.T01:intron 45.0%
TTTCACAGCTTCAGCTCCAT+CGG - Chr1:62373218-62373237 None:intergenic 45.0%
TTTGTCTCCTTTGGACACCA+AGG + Chr1:62375558-62375577 MsG0180003442.01.T01:intron 45.0%
! AGAGATTTTGTGGAAAGCCC+TGG + Chr1:62373433-62373452 MsG0180003442.01.T01:intron 45.0%
! AGGAAGTTGGGAGGGATTTT+AGG + Chr1:62375117-62375136 MsG0180003442.01.T01:intron 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + Chr1:62373671-62373690 MsG0180003442.01.T01:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + Chr1:62374045-62374064 MsG0180003442.01.T01:intron 45.0%
! TGGATGTGAGAGTGCAATGA+AGG - Chr1:62371935-62371954 None:intergenic 45.0%
!! GATTGAACCTTGGTGTCCAA+AGG - Chr1:62375568-62375587 None:intergenic 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - Chr1:62373643-62373662 None:intergenic 45.0%
AAGGACTTAGGGTTGACCCT+TGG - Chr1:62373580-62373599 None:intergenic 50.0%
AAGGAGAAGTGGGTCTACCT+TGG + Chr1:62373808-62373827 MsG0180003442.01.T01:intron 50.0%
ACTAGTGTGAGGACGCAGAA+TGG + Chr1:62373518-62373537 MsG0180003442.01.T01:intron 50.0%
AGTCGAGGGAGGAGTTAAAC+GGG + Chr1:62373696-62373715 MsG0180003442.01.T01:intron 50.0%
CAGCCCTACGGATTTGATGT+AGG + Chr1:62374774-62374793 MsG0180003442.01.T01:intron 50.0%
CCCACTCTCTCTCTCTCTAA+TGG - Chr1:62374170-62374189 None:intergenic 50.0%
CTACCCTCAACTTTGGTCAG+TGG + Chr1:62372914-62372933 MsG0180003442.01.T01:intron 50.0%
CTAGTGTGAGGACGCAGAAT+GGG + Chr1:62373519-62373538 MsG0180003442.01.T01:intron 50.0%
CTGAACTTGCCTATGGAAGC+AGG + Chr1:62375288-62375307 MsG0180003442.01.T01:CDS 50.0%
CTGCTTCCATAGGCAAGTTC+AGG - Chr1:62375290-62375309 None:intergenic 50.0%
CTGTCTTGCTTCTACTCAGG+CGG - Chr1:62373763-62373782 None:intergenic 50.0%
CTTCCATAGGCAAGTTCAGG+AGG - Chr1:62375287-62375306 None:intergenic 50.0%
GAAAGCCCTGGAGAAGAAAG+GGG + Chr1:62373445-62373464 MsG0180003442.01.T01:intron 50.0%
GAACTTGCCTATGGAAGCAG+GGG + Chr1:62375290-62375309 MsG0180003442.01.T01:CDS 50.0%
GACGCAGTTCACATGTGGTA+CGG - Chr1:62372669-62372688 None:intergenic 50.0%
GAGTCGAGGGAGGAGTTAAA+CGG + Chr1:62373695-62373714 MsG0180003442.01.T01:intron 50.0%
GATGGAGCTGAAGCTGTGAA+AGG + Chr1:62373217-62373236 MsG0180003442.01.T01:CDS 50.0%
GCATCTGAACTCATGTTGGC+AGG + Chr1:62375774-62375793 MsG0180003442.01.T01:intron 50.0%
GGAAAGCCCTGGAGAAGAAA+GGG + Chr1:62373444-62373463 MsG0180003442.01.T01:intron 50.0%
GTTCCTCCTGAACTTGCCTA+TGG + Chr1:62375281-62375300 MsG0180003442.01.T01:CDS 50.0%
TAGTGTGAGGACGCAGAATG+GGG + Chr1:62373520-62373539 MsG0180003442.01.T01:intron 50.0%
TGCTAGAGTCACTTCTCACC+TGG - Chr1:62374866-62374885 None:intergenic 50.0%
TGGAAAGCCCTGGAGAAGAA+AGG + Chr1:62373443-62373462 MsG0180003442.01.T01:intron 50.0%
TGGTTAATGCAGTTCACGCG+TGG + Chr1:62372511-62372530 MsG0180003442.01.T01:intron 50.0%
TTCTAAGTGGGTCGGCTACA+TGG - Chr1:62374429-62374448 None:intergenic 50.0%
! AAGTAAGCGTAGCGGAGATG+CGG + Chr1:62374092-62374111 MsG0180003442.01.T01:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+TGG + Chr1:62373734-62373753 MsG0180003442.01.T01:intron 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + Chr1:62373682-62373701 MsG0180003442.01.T01:intron 50.0%
! GGAGTGAAGGATGGTGATGA+TGG - Chr1:62371914-62371933 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + Chr1:62373681-62373700 MsG0180003442.01.T01:intron 50.0%
!! AATGGGTGTTGGAGGAGGAA+CGG + Chr1:62374532-62374551 MsG0180003442.01.T01:CDS 50.0%
!! AGACAAGGAATGGGTGTTGG+AGG + Chr1:62374524-62374543 MsG0180003442.01.T01:CDS 50.0%
AAGGATCGCGTGTCGCAGTA+CGG + Chr1:62373236-62373255 MsG0180003442.01.T01:intron 55.0%
CCTCACCCCTTTCTTCTCCA+GGG - Chr1:62373453-62373472 None:intergenic 55.0%
CGGATGTTGCGTTGGATGAG+TGG + Chr1:62374112-62374131 MsG0180003442.01.T01:intron 55.0%
CTAGAGACGGAAGGGGTAAG+TGG - Chr1:62375628-62375647 None:intergenic 55.0%
GAGAAGTGGGTCTACCTTGG+AGG + Chr1:62373811-62373830 MsG0180003442.01.T01:intron 55.0%
GATGTAGGCGAATCTGCGAG+AGG + Chr1:62374789-62374808 MsG0180003442.01.T01:CDS 55.0%
GCGGAAGCCATACGCTTCTA+AGG - Chr1:62373744-62373763 None:intergenic 55.0%
TAAACGGGAGGCTGGAGACT+TGG + Chr1:62373711-62373730 MsG0180003442.01.T01:intron 55.0%
TCCTCACCCCTTTCTTCTCC+AGG - Chr1:62373454-62373473 None:intergenic 55.0%
TTGGACTCCCCTGCTTCCAT+AGG - Chr1:62375300-62375319 None:intergenic 55.0%
!! CAAGGAATGGGTGTTGGAGG+AGG + Chr1:62374527-62374546 MsG0180003442.01.T01:CDS 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + Chr1:62374048-62374067 MsG0180003442.01.T01:intron 55.0%
AGGGGGCTTCGACTAGTGTG+AGG + Chr1:62373507-62373526 MsG0180003442.01.T01:intron 60.0%
CCCTGGAGAAGAAAGGGGTG+AGG + Chr1:62373450-62373469 MsG0180003442.01.T01:intron 60.0%
CGAGGGAGGAGTTAAACGGG+AGG + Chr1:62373699-62373718 MsG0180003442.01.T01:intron 60.0%
CGGAGATGCGGATGTTGCGT+TGG + Chr1:62374104-62374123 MsG0180003442.01.T01:intron 60.0%
GGAGGAGTTAAACGGGAGGC+TGG + Chr1:62373703-62373722 MsG0180003442.01.T01:intron 60.0%
TGGGCGACGCAGTTCACATG+TGG - Chr1:62372674-62372693 None:intergenic 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + Chr1:62373685-62373704 MsG0180003442.01.T01:intron 60.0%
! GGAGTAGAGGGCATGCGAGT+TGG + Chr1:62374837-62374856 MsG0180003442.01.T01:CDS 60.0%
! GTAGAGGGCATGCGAGTTGG+AGG + Chr1:62374840-62374859 MsG0180003442.01.T01:CDS 60.0%
ACGGGAGGCTGGAGACTTGG+AGG + Chr1:62373714-62373733 MsG0180003442.01.T01:intron 65.0%
! GGGCATGCGAGTTGGAGGCC+AGG + Chr1:62374845-62374864 MsG0180003442.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 62371891 62376072 62371891 ID=MsG0180003442.01;
Chr1 mRNA 62371891 62376072 62371891 ID=MsG0180003442.01.T01;Parent=MsG0180003442.01
Chr1 CDS 62371891 62371966 62371891 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62372066 62372218 62372066 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62372342 62372397 62372342 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62372804 62372859 62372804 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62373195 62373252 62373195 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62374479 62374553 62374479 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62374777 62374866 62374777 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62375269 62375346 62375269 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62375922 62375962 62375922 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Chr1 CDS 62376045 62376072 62376045 ID=MsG0180003442.01.T01.cds;Parent=MsG0180003442.01.T01
Gene Sequence

>MsG0180003442.01.T01

ATGGAACTCTCTCTTCTCAACCATCATCACCATCCTTCACTCCTTCATTGCACTCTCACATCCAATCTCTTCACAAGAACACACAAAAGACTTTACAACAAAAGTTCAAATAGGTTAATACCATGCAGCTGTTCACATTCTTCCTCCAATAAAACTGTTGTAGAACCAATCTCTATGTCTTTACAAATTGAAGGAAGGAGAACATTACTCACTTCTCTCCTCACAACATTTGCTGGAGTCTATGCATGTGATGTGGCTGAAGCTGTTAGCACTAGTAGAAGAGCTCTAAGAGGAGCCAAAATTCCTGAAAATGATTTCAAAACTTTGCCCAATGGTCTCAAGTACTATGATTTGAAGGTTGCCGATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACCTTCATGACTAGTAGACAAGGAATGGGTGTTGGAGGAGGAACGCCCTACGGATTTGATGTAGGCGAATCTGCGAGAGGAAATGTCTTAAAAGGTTTGGATGTAGGAGTAGAGGGCATGCGAGTTGGAGGCCAGCGGTTGTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAGGGGAGTCCAAGAAATTCCTCCAAATGCAACAATAGAGATGGATATTGAACTGCTTGCCATCAAACAAAGTCCATTTGGGACTGCCGTAAAGATTGTTGAAGGCTAA

Protein sequence

>MsG0180003442.01.T01

MELSLLNHHHHPSLLHCTLTSNLFTRTHKRLYNKSSNRLIPCSCSHSSSNKTVVEPISMSLQIEGRRTLLTSLLTTFAGVYACDVAEAVSTSRRALRGAKIPENDFKTLPNGLKYYDLKVADGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESARGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGSRGVQEIPPNATIEMDIELLAIKQSPFGTAVKIVEG*