AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039230.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039230.01.T01 MTR_7g068310 88.571 525 19 3 1 518 1 491 0.0 891
MsG0780039230.01.T01 MTR_5g025160 27.430 463 262 17 79 503 139 565 1.86e-31 128
MsG0780039230.01.T01 MTR_5g044720 26.566 399 243 11 117 503 390 750 4.51e-31 128
MsG0780039230.01.T01 MTR_4g134590 26.492 419 247 14 98 498 99 474 5.73e-25 108
MsG0780039230.01.T01 MTR_7g096920 27.899 276 171 5 65 333 15 269 8.48e-25 107
MsG0780039230.01.T01 MTR_4g077650 27.857 420 240 17 98 498 87 462 2.70e-24 106
MsG0780039230.01.T01 MTR_7g058500 27.723 202 129 5 150 343 152 344 4.42e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039230.01.T01 AT5G01510 60.169 472 143 5 59 514 61 503 0.0 518
MsG0780039230.01.T01 AT3G45890 24.664 446 294 11 32 464 121 537 4.15e-31 127
MsG0780039230.01.T01 AT5G49820 31.159 276 166 7 98 367 94 351 7.71e-25 108
MsG0780039230.01.T01 AT1G13770 28.085 235 155 5 111 337 52 280 2.80e-24 103
MsG0780039230.01.T01 AT1G13770 28.085 235 155 5 111 337 52 280 7.75e-24 103
MsG0780039230.01.T01 AT1G13770 28.571 231 151 5 111 333 52 276 1.55e-23 103
MsG0780039230.01.T01 AT2G31190 25.267 281 192 4 65 343 32 296 2.45e-21 97.1
MsG0780039230.01.T01 AT2G31190 25.267 281 192 4 65 343 33 297 2.76e-21 96.7
MsG0780039230.01.T01 AT1G13770 27.568 185 127 3 150 333 11 189 2.68e-18 87.0
MsG0780039230.01.T01 AT2G23470 27.803 223 147 3 57 272 64 279 3.01e-18 88.2

Find 125 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATACATTGAATAATT+TGG 0.127858 7:+60242072 None:intergenic
GCATTTCAAGCTTTGGATAT+TGG 0.195174 7:-60247773 MsG0780039230.01.T01:five_prime_UTR
TTTCCGAATGGAATTATTTC+AGG 0.205797 7:-60243013 MsG0780039230.01.T01:CDS
GGTGAACCGAAAATTATTAT+TGG 0.215950 7:+60242935 None:intergenic
GCATACATTCTCCATTGTTT+TGG 0.217722 7:+60244806 None:intergenic
AAAGATGATGATGTTAATAA+AGG 0.233940 7:-60247565 MsG0780039230.01.T01:CDS
CTTTGCAATTTCAGTAAATC+TGG 0.249782 7:-60243997 MsG0780039230.01.T01:CDS
CTGCTTCTGCTGCTGCCATC+AGG 0.250457 7:-60245143 MsG0780039230.01.T01:intron
CAATTGGTTGGTCTTGGTTT+GGG 0.254535 7:-60243538 MsG0780039230.01.T01:CDS
ATCTTTGAAACTGGAATGTT+TGG 0.255255 7:+60247582 None:intergenic
ATCATCGATTGAAATTTCTT+TGG 0.264727 7:+60242193 None:intergenic
TACAACTTATGTTATCAAAT+TGG 0.275509 7:-60241981 MsG0780039230.01.T01:three_prime_UTR
TTTCTATATTTGTTAGTGTT+TGG 0.282619 7:-60241892 MsG0780039230.01.T01:three_prime_UTR
GAAGCATATGGCAGACATTC+TGG 0.299004 7:-60242358 MsG0780039230.01.T01:CDS
TTAATGAACAGATACGTAAT+TGG 0.300003 7:-60246449 MsG0780039230.01.T01:intron
GTTGGTGTTGGTTCTTTCTC+TGG 0.300751 7:-60245177 MsG0780039230.01.T01:CDS
CATTCTGGCTTAGTGAGAAT+TGG 0.301398 7:-60242343 MsG0780039230.01.T01:CDS
GGTCTCTGCAAAACAGGTTT+GGG 0.302750 7:-60246385 MsG0780039230.01.T01:CDS
TCAATTGGTTGGTCTTGGTT+TGG 0.303687 7:-60243539 MsG0780039230.01.T01:CDS
ATAAAATCTTTAATCCTATC+TGG 0.305573 7:+60246326 None:intergenic
GAAAGTATCCGGGATATAAC+TGG 0.312984 7:+60244652 None:intergenic
TCCCGGATACTTTCTTCCTT+TGG 0.322911 7:-60244643 MsG0780039230.01.T01:CDS
GCCTAATGGAATTGGAAAAT+AGG 0.325397 7:-60242283 MsG0780039230.01.T01:CDS
TAATATCTCAGGAAGAAGTT+TGG 0.326695 7:-60243573 MsG0780039230.01.T01:intron
AACATCATCATCTTTGAAAC+TGG 0.327172 7:+60247573 None:intergenic
CATGCCATCCATCTTGTCTA+AGG 0.331624 7:+60242913 None:intergenic
TTGTACGGCTTCTTCATCTT+TGG 0.346675 7:-60243351 MsG0780039230.01.T01:CDS
TCTTTCTGCATTTCAAGCTT+TGG 0.346879 7:-60247780 MsG0780039230.01.T01:five_prime_UTR
TGCCAGTAGCCTAATGGAAT+TGG 0.355134 7:-60242291 MsG0780039230.01.T01:CDS
AAGATGATGATGTTAATAAA+GGG 0.356132 7:-60247564 MsG0780039230.01.T01:intron
TCATCGATTGAAATTTCTTT+GGG 0.359663 7:+60242194 None:intergenic
GTAGCTCAATTGGTTGGTCT+TGG 0.361164 7:-60243544 MsG0780039230.01.T01:CDS
TAACAGATCAGTGCCTTGTT+TGG 0.365554 7:-60241858 None:intergenic
GCTGTCGGGCGCTTATTCAT+TGG 0.371785 7:-60244948 MsG0780039230.01.T01:intron
TTTCTTCCTTTGGCATCTCT+TGG 0.375549 7:-60244633 MsG0780039230.01.T01:CDS
ATTCTACCTGCAGGATTTCC+CGG 0.377128 7:-60246305 MsG0780039230.01.T01:intron
TGGTTTGGGCATATTGATAC+TGG 0.380527 7:-60243524 MsG0780039230.01.T01:intron
ACATGCTTACCGTGTTAAAC+TGG 0.381456 7:+60243302 None:intergenic
TTGGGAAGTTGTAGCTCAAT+TGG 0.384419 7:-60243554 MsG0780039230.01.T01:CDS
CACTTGCAGGCTGTTGGTGT+TGG 0.386855 7:-60245189 MsG0780039230.01.T01:intron
AGGATTATCAAGGGTGATAT+TGG 0.393461 7:-60247415 MsG0780039230.01.T01:CDS
AATATCTCAGGAAGAAGTTT+GGG 0.394078 7:-60243572 MsG0780039230.01.T01:intron
TTTAGAGTTATTACTCTTCA+AGG 0.395986 7:-60243049 MsG0780039230.01.T01:CDS
CCCCTTCACTTGCAGGCTGT+TGG 0.399709 7:-60245195 MsG0780039230.01.T01:intron
GCAGACTTCATTGGCAGTGC+TGG 0.407400 7:-60244785 MsG0780039230.01.T01:CDS
CATCAACTTGGTTGATTGTA+CGG 0.407754 7:-60243366 MsG0780039230.01.T01:CDS
AGGTCTCTGCAAAACAGGTT+TGG 0.411007 7:-60246386 MsG0780039230.01.T01:CDS
TTCCAATTCCATTAGGCTAC+TGG 0.411161 7:+60242289 None:intergenic
TACTCAACAATTAAATTTGA+AGG 0.423130 7:-60242219 MsG0780039230.01.T01:CDS
TGCCAAAGGAAGAAAGTATC+CGG 0.432417 7:+60244641 None:intergenic
AGGATAGGTCTCTGCAAAAC+AGG 0.433677 7:-60246391 MsG0780039230.01.T01:CDS
TCCAAATTCTAACATGGGTC+AGG 0.436102 7:-60247843 None:intergenic
TAACATGGGTCAGGTCAAAT+CGG 0.437566 7:-60247834 None:intergenic
ATTCTGGCTTAGTGAGAATT+GGG 0.446216 7:-60242342 MsG0780039230.01.T01:CDS
TCTTAAGCGTGCTCGCATAC+TGG 0.455271 7:-60243134 MsG0780039230.01.T01:CDS
AGCAGCAGAAGCAGCTGCTG+TGG 0.459258 7:+60245152 None:intergenic
AAAAGTTGAAAGATGCTGAA+TGG 0.461318 7:-60242244 MsG0780039230.01.T01:CDS
CGGTTCACCCTTAGACAAGA+TGG 0.462228 7:-60242921 MsG0780039230.01.T01:CDS
AAAGTTGAAAGATGCTGAAT+GGG 0.463223 7:-60242243 MsG0780039230.01.T01:CDS
TTTGAAACTGGAATGTTTGG+AGG 0.467151 7:+60247585 None:intergenic
TCAACTTGCCAGTAGCCTAA+TGG 0.467930 7:-60242297 MsG0780039230.01.T01:CDS
GACTATCCTGGCTTCCAGAT+AGG 0.471080 7:-60246340 MsG0780039230.01.T01:CDS
CTGAATGTAACCTGGAACAG+TGG 0.482339 7:+60243090 None:intergenic
TCTCGGTATTGCGAAGCATA+TGG 0.483109 7:-60242370 MsG0780039230.01.T01:CDS
TTTGCAATTTCAGTAAATCT+GGG 0.495289 7:-60243996 MsG0780039230.01.T01:CDS
AACATGGGTCAGGTCAAATC+GGG 0.495509 7:-60247833 None:intergenic
ATCTCTTGGAAATCTTACTA+AGG 0.499636 7:-60244619 MsG0780039230.01.T01:intron
TTTAATCCTATCTGGAAGCC+AGG 0.499967 7:+60246334 None:intergenic
AGCCAGGATAGTCTTTCATC+AGG 0.500273 7:+60246350 None:intergenic
CCATTCTAGTTGAGGAGGAT+AGG 0.503587 7:-60246406 MsG0780039230.01.T01:CDS
CATCCTGAAATAATTCCATT+CGG 0.505301 7:+60243010 None:intergenic
CCTATCCTCCTCAACTAGAA+TGG 0.506141 7:+60246406 None:intergenic
CTCTTCAAAGATGATTAAGT+AGG 0.511183 7:-60241954 MsG0780039230.01.T01:three_prime_UTR
GAAGTTGTAGCTCAATTGGT+TGG 0.519901 7:-60243550 MsG0780039230.01.T01:CDS
ATACTGTACTTTCATCAACT+TGG 0.527353 7:-60243378 MsG0780039230.01.T01:CDS
TTAGAGGTGAAGGATTATCA+AGG 0.528187 7:-60247425 MsG0780039230.01.T01:intron
CTACTTAATCATCTTTGAAG+AGG 0.529454 7:+60241955 None:intergenic
ATCCATCCAGTCACATTGGT+AGG 0.529733 7:+60245845 None:intergenic
AAGGATGGCATTGGAGCTGT+CGG 0.529974 7:-60244963 MsG0780039230.01.T01:CDS
AGAATGTATGCAGACTTCAT+TGG 0.530282 7:-60244794 MsG0780039230.01.T01:CDS
TGGGTCTCAAAGGATGGCAT+TGG 0.537422 7:-60244972 MsG0780039230.01.T01:CDS
AGGATGGCATTGGAGCTGTC+GGG 0.550390 7:-60244962 MsG0780039230.01.T01:CDS
CATCTTTAGATGGGTCTCAA+AGG 0.550682 7:-60244982 MsG0780039230.01.T01:intron
ATTATCAAGGGTGATATTGG+TGG 0.553974 7:-60247412 MsG0780039230.01.T01:CDS
TAGTGAGAATTGGGAGAGCA+AGG 0.555670 7:-60242333 MsG0780039230.01.T01:CDS
CTTTGAATCACTCTAGAAGA+AGG 0.556421 7:+60244023 None:intergenic
TCCCTACCAATGTGACTGGA+TGG 0.558437 7:-60245847 MsG0780039230.01.T01:CDS
CAGTTCCCTACCAATGTGAC+TGG 0.562304 7:-60245851 MsG0780039230.01.T01:CDS
GTATTTATCTGAATGTAACC+TGG 0.563634 7:+60243082 None:intergenic
ACTTCATTGGCAGTGCTGGA+AGG 0.564752 7:-60244781 MsG0780039230.01.T01:intron
TCTGGGAGAGGTAGCAGCAA+AGG 0.572717 7:-60243979 MsG0780039230.01.T01:intron
CTTAGACAAGATGGATGGCA+TGG 0.578014 7:-60242912 MsG0780039230.01.T01:CDS
CTGACAACCCAGTTATATCC+CGG 0.581410 7:-60244660 MsG0780039230.01.T01:CDS
ATGCCATCCATCTTGTCTAA+GGG 0.583309 7:+60242914 None:intergenic
GCAAACCATTCTAGTTGAGG+AGG 0.584171 7:-60246411 MsG0780039230.01.T01:CDS
ATTGCAAACCATTCTAGTTG+AGG 0.585851 7:-60246414 MsG0780039230.01.T01:CDS
GAAAGAGCCACGAGTCGGAT+CGG 0.586359 7:+60247797 None:intergenic
GCCAAAGGAAGAAAGTATCC+GGG 0.588350 7:+60244642 None:intergenic
TAGAGGTGAAGGATTATCAA+GGG 0.589692 7:-60247424 MsG0780039230.01.T01:CDS
AATTTCAGTAAATCTGGGAG+AGG 0.591324 7:-60243991 MsG0780039230.01.T01:CDS
TCCATCCAGTCACATTGGTA+GGG 0.591774 7:+60245846 None:intergenic
TAATTACCGGGAAATCCTGC+AGG 0.594135 7:+60246299 None:intergenic
ATAGCAATGGTACTGCTAAG+AGG 0.594451 7:-60247383 MsG0780039230.01.T01:intron
TTTAGATGGGTCTCAAAGGA+TGG 0.597709 7:-60244978 MsG0780039230.01.T01:intron
GTCTCTGCAAAACAGGTTTG+GGG 0.604028 7:-60246384 MsG0780039230.01.T01:CDS
GGTTGGAGCTACAAGTGTCT+CGG 0.609927 7:-60242387 MsG0780039230.01.T01:CDS
TTAAAACAGGCTATAGCAAG+AGG 0.616791 7:-60244056 MsG0780039230.01.T01:intron
CTCCTGATGAAAGACTATCC+TGG 0.620083 7:-60246352 MsG0780039230.01.T01:CDS
TCGACGATGATCCAAAACAA+TGG 0.620424 7:-60244817 MsG0780039230.01.T01:CDS
AAAGTATCCGGGATATAACT+GGG 0.620739 7:+60244653 None:intergenic
GCAAGGAATCTTTCCAAACA+AGG 0.621869 7:+60241845 None:intergenic
ACATATCCATCCAGTCACAT+TGG 0.626260 7:+60245841 None:intergenic
TTCAGTTCTCCAGTTTAACA+CGG 0.628698 7:-60243311 MsG0780039230.01.T01:intron
AAATGAGAAATATATTCTTG+TGG 0.641580 7:-60242733 MsG0780039230.01.T01:CDS
AGATTTCCAAGAGATGCCAA+AGG 0.646763 7:+60244627 None:intergenic
AGGAAGAGAATATATTAGTG+TGG 0.649489 7:-60242973 MsG0780039230.01.T01:CDS
AGAAGCTCCGATCCGACTCG+TGG 0.652017 7:-60247804 MsG0780039230.01.T01:five_prime_UTR
TCACCCTTAGACAAGATGGA+TGG 0.654671 7:-60242917 MsG0780039230.01.T01:CDS
AGTGAGAATTGGGAGAGCAA+GGG 0.656379 7:-60242332 MsG0780039230.01.T01:CDS
GATTTACTGAAATTGCAAAG+TGG 0.657297 7:+60244000 None:intergenic
AGGATGCTTCAATTGCAACA+AGG 0.665131 7:-60242993 MsG0780039230.01.T01:CDS
ATGCAGAAAGAGCCACGAGT+CGG 0.667912 7:+60247792 None:intergenic
CGTTCGACTCTCGAAAACCC+CGG 0.696403 7:+60242110 None:intergenic
TTGGTGGAGAGATATAGCAA+TGG 0.703982 7:-60247396 MsG0780039230.01.T01:CDS
CATAGAATTTGAAAACTACG+AGG 0.716356 7:+60247610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTTATTCTACATT+TGG - Chr7:60246873-60246892 MsG0780039230.01.T01:intron 10.0%
!! TAATTATTTATTCTACATTT+GGG - Chr7:60246874-60246893 MsG0780039230.01.T01:intron 10.0%
!!! AGATATTTTTTTATAACATT+TGG + Chr7:60244075-60244094 None:intergenic 10.0%
!!! AAAGTATATTGATTTACATT+AGG - Chr7:60244110-60244129 MsG0780039230.01.T01:intron 15.0%
!!! AATGTAAATCAATATACTTT+TGG + Chr7:60244110-60244129 None:intergenic 15.0%
!!! GATTTGAGTTAATTAAATTA+AGG - Chr7:60242181-60242200 MsG0780039230.01.T01:CDS 15.0%
!!! TATTTTTATATAAGCTATGT+TGG + Chr7:60245361-60245380 None:intergenic 15.0%
!!! TTGATAATAATTTGAGAAAA+TGG - Chr7:60244265-60244284 MsG0780039230.01.T01:intron 15.0%
!! AAAACAGTTTATAGTCTATA+TGG - Chr7:60247162-60247181 MsG0780039230.01.T01:intron 20.0%
!! AAAGTCAAAATAACAAATAG+TGG + Chr7:60244657-60244676 None:intergenic 20.0%
!! AAATGAGAAATATATTCTTG+TGG - Chr7:60246955-60246974 MsG0780039230.01.T01:intron 20.0%
!! AAATTAAGAAAAACGAGATA+AGG + Chr7:60245928-60245947 None:intergenic 20.0%
!! AAGAAATGTATGTTAATTAC+CGG + Chr7:60243405-60243424 None:intergenic 20.0%
!! AATAAAATCTAGATCAAACA+GGG + Chr7:60247068-60247087 None:intergenic 20.0%
!! ACAATTAAGACTGAAATTAA+GGG - Chr7:60243624-60243643 MsG0780039230.01.T01:intron 20.0%
!! ATAAAATCTTTAATCCTATC+TGG + Chr7:60243365-60243384 None:intergenic 20.0%
!! ATTACAAATTTATCTCATGT+TGG + Chr7:60243601-60243620 None:intergenic 20.0%
!! CTATAAATAAGAAATACTCA+TGG - Chr7:60242921-60242940 MsG0780039230.01.T01:CDS 20.0%
!! TAATAAAATCTAGATCAAAC+AGG + Chr7:60247069-60247088 None:intergenic 20.0%
!! TACAACTTATGTTATCAAAT+TGG - Chr7:60247707-60247726 MsG0780039230.01.T01:exon 20.0%
!! TACAATTAAGACTGAAATTA+AGG - Chr7:60243623-60243642 MsG0780039230.01.T01:intron 20.0%
!! TACTCAACAATTAAATTTGA+AGG - Chr7:60247469-60247488 MsG0780039230.01.T01:intron 20.0%
!! TGCTAATACATTGAATAATT+TGG + Chr7:60247619-60247638 None:intergenic 20.0%
!!! AAAATATTTATTTTCACCTG+AGG - Chr7:60247659-60247678 MsG0780039230.01.T01:CDS 20.0%
!!! AAAGATGATGATGTTAATAA+AGG - Chr7:60242123-60242142 MsG0780039230.01.T01:three_prime_UTR 20.0%
!!! AACTTCAAAACTTTAGAAAA+TGG - Chr7:60243479-60243498 MsG0780039230.01.T01:intron 20.0%
!!! AAGATGATGATGTTAATAAA+GGG - Chr7:60242124-60242143 MsG0780039230.01.T01:three_prime_UTR 20.0%
!!! ACTTCAAAACTTTAGAAAAT+GGG - Chr7:60243480-60243499 MsG0780039230.01.T01:intron 20.0%
!!! AGTTTTAATAGTAATCTGTT+TGG + Chr7:60245481-60245500 None:intergenic 20.0%
!!! ATGAAGCCAATAATAATTTT+CGG - Chr7:60246747-60246766 MsG0780039230.01.T01:intron 20.0%
!!! ATGCTTTTTAAACTCTAAAA+TGG - Chr7:60247522-60247541 MsG0780039230.01.T01:intron 20.0%
!!! ATTAAAGTTTGTTTTAGAGA+AGG + Chr7:60243198-60243217 None:intergenic 20.0%
!!! ATTTGATTAGTTTTTATGGT+TGG - Chr7:60243960-60243979 MsG0780039230.01.T01:intron 20.0%
!!! ATTTTTCTATCACAAATGTA+TGG - Chr7:60244436-60244455 MsG0780039230.01.T01:intron 20.0%
!!! CTTATTTTGATAAGTTCTTT+AGG - Chr7:60247134-60247153 MsG0780039230.01.T01:intron 20.0%
!!! GAGTATTTGATTAGTTTTTA+TGG - Chr7:60243956-60243975 MsG0780039230.01.T01:intron 20.0%
!!! GTAAATACTATCTCAATTTT+TGG + Chr7:60247690-60247709 None:intergenic 20.0%
!!! GTTTATCTTATTTTGTTTAG+AGG - Chr7:60242247-60242266 MsG0780039230.01.T01:CDS 20.0%
!!! TACTATCATAAGTACTTTTA+GGG - Chr7:60245271-60245290 MsG0780039230.01.T01:intron 20.0%
!!! TCTATGAATACTTTTTTATC+AGG - Chr7:60245828-60245847 MsG0780039230.01.T01:intron 20.0%
!!! TTTCTATATTTGTTAGTGTT+TGG - Chr7:60247796-60247815 MsG0780039230.01.T01:five_prime_UTR 20.0%
!!! TTTTTAAACATAAGATGACA+TGG + Chr7:60244414-60244433 None:intergenic 20.0%
! AAAAGATGTAGCTTATTGTT+AGG - Chr7:60245169-60245188 MsG0780039230.01.T01:CDS 25.0%
! AAAGCTAAAAGAATGTAACA+TGG + Chr7:60246256-60246275 None:intergenic 25.0%
! AACATATACAAACACTAGAT+AGG + Chr7:60242880-60242899 None:intergenic 25.0%
! AAGTACACAATAACAACAAA+TGG + Chr7:60242347-60242366 None:intergenic 25.0%
! AAGTATTCATAGATAGAAGA+GGG + Chr7:60245821-60245840 None:intergenic 25.0%
! AATTAACTAAAAACAGCTGA+TGG + Chr7:60245326-60245345 None:intergenic 25.0%
! AGAAATGTATGTTAATTACC+GGG + Chr7:60243404-60243423 None:intergenic 25.0%
! AGATATCCAGAAAAATTATG+TGG + Chr7:60246194-60246213 None:intergenic 25.0%
! AGTACTAGTTAACTTTATGA+AGG - Chr7:60247280-60247299 MsG0780039230.01.T01:intron 25.0%
! ATTTCCATACAAAAACAAGA+AGG + Chr7:60244943-60244962 None:intergenic 25.0%
! CAGAAAATTATGGACAAATA+TGG + Chr7:60243050-60243069 None:intergenic 25.0%
! CTTGATATTGCAGAAAATTA+TGG + Chr7:60243060-60243079 None:intergenic 25.0%
! GAATTCATGAAGAAAACTTA+CGG - Chr7:60244768-60244787 MsG0780039230.01.T01:intron 25.0%
! GTTAATTTAGTTACGCTATA+GGG - Chr7:60242656-60242675 MsG0780039230.01.T01:intron 25.0%
! TAATTCTCATAAGCGAAATA+AGG + Chr7:60247030-60247049 None:intergenic 25.0%
! TCAATTCGCAATAATGATTA+TGG - Chr7:60245561-60245580 MsG0780039230.01.T01:intron 25.0%
! TGCAAAAAATAGTTACAACA+AGG + Chr7:60246528-60246547 None:intergenic 25.0%
! TGTTAATTTAGTTACGCTAT+AGG - Chr7:60242655-60242674 MsG0780039230.01.T01:intron 25.0%
! TTAATGAACAGATACGTAAT+TGG - Chr7:60243239-60243258 MsG0780039230.01.T01:intron 25.0%
! TTAGGTTAAGATTATGCTAA+TGG - Chr7:60246036-60246055 MsG0780039230.01.T01:intron 25.0%
! TTATGCTTTCATCTTTAGAT+GGG - Chr7:60244697-60244716 MsG0780039230.01.T01:intron 25.0%
! TTATTGCATAAATTTCAGAG+TGG - Chr7:60243169-60243188 MsG0780039230.01.T01:intron 25.0%
! TTTATGCTTTCATCTTTAGA+TGG - Chr7:60244696-60244715 MsG0780039230.01.T01:intron 25.0%
! TTTCATAATACGTGTCATAA+TGG - Chr7:60246899-60246918 MsG0780039230.01.T01:intron 25.0%
! TTTGCAATTTCAGTAAATCT+GGG - Chr7:60245692-60245711 MsG0780039230.01.T01:intron 25.0%
! TTTGGATTTGACATTAAAAC+AGG - Chr7:60245619-60245638 MsG0780039230.01.T01:intron 25.0%
!! AAAGTATTCATAGATAGAAG+AGG + Chr7:60245822-60245841 None:intergenic 25.0%
!! ATCATCGATTGAAATTTCTT+TGG + Chr7:60247498-60247517 None:intergenic 25.0%
!! CATAATTTTCTGCAATATCA+AGG - Chr7:60243058-60243077 MsG0780039230.01.T01:CDS 25.0%
!! CTACTATCATAAGTACTTTT+AGG - Chr7:60245270-60245289 MsG0780039230.01.T01:intron 25.0%
!! GTACAGTATATGATTTTACA+AGG + Chr7:60246299-60246318 None:intergenic 25.0%
!! TCATCGATTGAAATTTCTTT+GGG + Chr7:60247497-60247516 None:intergenic 25.0%
!! TCTTTTGACAATAATATCTC+AGG - Chr7:60246104-60246123 MsG0780039230.01.T01:intron 25.0%
!! TGATTTGTCATTGTTAAGAT+TGG + Chr7:60246460-60246479 None:intergenic 25.0%
!! TTTAGAGTTATTACTCTTCA+AGG - Chr7:60246639-60246658 MsG0780039230.01.T01:intron 25.0%
!!! CTATTATCACAGTTTTATGA+AGG - Chr7:60246836-60246855 MsG0780039230.01.T01:intron 25.0%
!!! CTTCATTTTTTAATGATACC+GGG - Chr7:60247560-60247579 MsG0780039230.01.T01:intron 25.0%
!!! CTTTTTAAACTCTAAAATGG+TGG - Chr7:60247525-60247544 MsG0780039230.01.T01:intron 25.0%
!!! GAAGTTTTATGTTTCTTTCA+AGG - Chr7:60247000-60247019 MsG0780039230.01.T01:intron 25.0%
!!! GCTTCATTTTTTAATGATAC+CGG - Chr7:60247559-60247578 MsG0780039230.01.T01:intron 25.0%
!!! TATTTTGACTTTTATGTCGT+TGG - Chr7:60244665-60244684 MsG0780039230.01.T01:CDS 25.0%
!!! TGTTCCTATAAACTTTTTCA+TGG - Chr7:60244159-60244178 MsG0780039230.01.T01:intron 25.0%
!!! TTCATTTTTTAATGATACCG+GGG - Chr7:60247561-60247580 MsG0780039230.01.T01:intron 25.0%
AAAACCTTCCATGATTGTTA+TGG - Chr7:60247098-60247117 MsG0780039230.01.T01:intron 30.0%
AAAAGTTGAAAGATGCTGAA+TGG - Chr7:60247444-60247463 MsG0780039230.01.T01:intron 30.0%
AAAGTTGAAAGATGCTGAAT+GGG - Chr7:60247445-60247464 MsG0780039230.01.T01:intron 30.0%
AATATCTCAGGAAGAAGTTT+GGG - Chr7:60246116-60246135 MsG0780039230.01.T01:intron 30.0%
AGGAAGAGAATATATTAGTG+TGG - Chr7:60246715-60246734 MsG0780039230.01.T01:intron 30.0%
ATACTGTACTTTCATCAACT+TGG - Chr7:60246310-60246329 MsG0780039230.01.T01:CDS 30.0%
ATCTCTTGGAAATCTTACTA+AGG - Chr7:60245069-60245088 MsG0780039230.01.T01:intron 30.0%
ATCTTCAACCATAACAATCA+TGG + Chr7:60247109-60247128 None:intergenic 30.0%
ATGAGCAATGAACCTATTAA+CGG + Chr7:60243532-60243551 None:intergenic 30.0%
CACAAAATGCAAACATTCTT+GGG + Chr7:60243937-60243956 None:intergenic 30.0%
CATAGAATTTGAAAACTACG+AGG + Chr7:60242081-60242100 None:intergenic 30.0%
CATCCTGAAATAATTCCATT+CGG + Chr7:60246681-60246700 None:intergenic 30.0%
CCTTCCATGAAAAAGTTTAT+AGG + Chr7:60244166-60244185 None:intergenic 30.0%
CTAGTTAACTTTATGAAGGT+TGG - Chr7:60247284-60247303 MsG0780039230.01.T01:intron 30.0%
CTCTTCAAAGATGATTAAGT+AGG - Chr7:60247734-60247753 MsG0780039230.01.T01:five_prime_UTR 30.0%
CTTTGCAATTTCAGTAAATC+TGG - Chr7:60245691-60245710 MsG0780039230.01.T01:intron 30.0%
GATCATATCTATAAAGCCTT+GGG - Chr7:60245758-60245777 MsG0780039230.01.T01:intron 30.0%
GATTTACTGAAATTGCAAAG+TGG + Chr7:60245691-60245710 None:intergenic 30.0%
GGTGAACCGAAAATTATTAT+TGG + Chr7:60246756-60246775 None:intergenic 30.0%
GTATTTATCTGAATGTAACC+TGG + Chr7:60246609-60246628 None:intergenic 30.0%
GTTAAGATTATGCTAATGGT+AGG - Chr7:60246040-60246059 MsG0780039230.01.T01:intron 30.0%
TAATATCTCAGGAAGAAGTT+TGG - Chr7:60246115-60246134 MsG0780039230.01.T01:intron 30.0%
TATATGTTTCCTCGTATCAT+AGG - Chr7:60242892-60242911 MsG0780039230.01.T01:intron 30.0%
TCACAAAATGCAAACATTCT+TGG + Chr7:60243938-60243957 None:intergenic 30.0%
TCGTTCATTAGAACAAAGAT+CGG + Chr7:60246489-60246508 None:intergenic 30.0%
TCTATTTAAACACGTGAAAC+TGG - Chr7:60245100-60245119 MsG0780039230.01.T01:intron 30.0%
TGATCATATCTATAAAGCCT+TGG - Chr7:60245757-60245776 MsG0780039230.01.T01:intron 30.0%
TGCGAATTGATAAAGAGAAA+AGG + Chr7:60245551-60245570 None:intergenic 30.0%
TTAAAACCTTGCTTGTTTCA+TGG - Chr7:60243117-60243136 MsG0780039230.01.T01:CDS 30.0%
TTCCTGTATTAATGCAATGT+TGG - Chr7:60245871-60245890 MsG0780039230.01.T01:CDS 30.0%
TTTCCGAATGGAATTATTTC+AGG - Chr7:60246675-60246694 MsG0780039230.01.T01:intron 30.0%
TTTGTCATTGTTAAGATTGG+TGG + Chr7:60246457-60246476 None:intergenic 30.0%
! AAAAACTGATTCAAGACTCT+TGG - Chr7:60245953-60245972 MsG0780039230.01.T01:intron 30.0%
! AAAACTGATTCAAGACTCTT+GGG - Chr7:60245954-60245973 MsG0780039230.01.T01:intron 30.0%
! AAAGATTTTATTCTACCTGC+AGG - Chr7:60243374-60243393 MsG0780039230.01.T01:CDS 30.0%
! AAGAGTCTTGAATCAGTTTT+TGG + Chr7:60245954-60245973 None:intergenic 30.0%
! AAGCTATTGATGACACAATT+AGG - Chr7:60246018-60246037 MsG0780039230.01.T01:intron 30.0%
! AATTGATTCTCTGATCCAAT+GGG - Chr7:60245980-60245999 MsG0780039230.01.T01:intron 30.0%
! ACCTATTTTCCAATTCCATT+AGG + Chr7:60247409-60247428 None:intergenic 30.0%
! CATACAGTTGTGTAATGTTT+TGG - Chr7:60245601-60245620 MsG0780039230.01.T01:intron 30.0%
! CATGTTGGTTAATATTTCTG+TGG + Chr7:60243586-60243605 None:intergenic 30.0%
! CTACTTAATCATCTTTGAAG+AGG + Chr7:60247736-60247755 None:intergenic 30.0%
! GGTAAACCACATAATTTTTC+TGG - Chr7:60246185-60246204 MsG0780039230.01.T01:intron 30.0%
! TAACCTCTTTGCATGTTTTA+AGG - Chr7:60242155-60242174 MsG0780039230.01.T01:three_prime_UTR 30.0%
! TAATTGATTCTCTGATCCAA+TGG - Chr7:60245979-60245998 MsG0780039230.01.T01:intron 30.0%
!! AAAGTTGATAATTCACCTGA+TGG + Chr7:60244563-60244582 None:intergenic 30.0%
!! AACATCATCATCTTTGAAAC+TGG + Chr7:60242118-60242137 None:intergenic 30.0%
!! AACCTCTTTGCATGTTTTAA+GGG - Chr7:60242156-60242175 MsG0780039230.01.T01:three_prime_UTR 30.0%
!! AAGTTGATGTTTCACATTCA+CGG - Chr7:60243703-60243722 MsG0780039230.01.T01:intron 30.0%
!! ATCTTTGAAACTGGAATGTT+TGG + Chr7:60242109-60242128 None:intergenic 30.0%
!!! AGTTTTTTCAAGTTTCCGAA+TGG - Chr7:60246663-60246682 MsG0780039230.01.T01:intron 30.0%
!!! CCTATAAACTTTTTCATGGA+AGG - Chr7:60244163-60244182 MsG0780039230.01.T01:intron 30.0%
!!! CTTATTTTGTTTAGAGGTGA+AGG - Chr7:60242253-60242272 MsG0780039230.01.T01:CDS 30.0%
!!! TCAATTTTTGGAATAACCTC+AGG + Chr7:60247678-60247697 None:intergenic 30.0%
!!! TCACTGTTATTAGTTTTTCC+AGG - Chr7:60244828-60244847 MsG0780039230.01.T01:CDS 30.0%
!!! TGTTATTAGTTTTTCCAGGT+GGG - Chr7:60244832-60244851 MsG0780039230.01.T01:CDS 30.0%
AAATATGGCTGCAAATGCAT+TGG + Chr7:60243035-60243054 None:intergenic 35.0%
AACATAAGATGACATGGTGA+AGG + Chr7:60244408-60244427 None:intergenic 35.0%
AACCCTTAAAACATGCAAAG+AGG + Chr7:60242161-60242180 None:intergenic 35.0%
AAGCTATGTTGGAGAACTTA+AGG + Chr7:60245350-60245369 None:intergenic 35.0%
AATTTCAGTAAATCTGGGAG+AGG - Chr7:60245697-60245716 MsG0780039230.01.T01:intron 35.0%
AGAATGTATGCAGACTTCAT+TGG - Chr7:60244894-60244913 MsG0780039230.01.T01:intron 35.0%
AGGATTATCAAGGGTGATAT+TGG - Chr7:60242273-60242292 MsG0780039230.01.T01:CDS 35.0%
AGTATGTGTTAGCAGAAGTT+TGG - Chr7:60242513-60242532 MsG0780039230.01.T01:intron 35.0%
ATCGATTAGATGAAGTTGGA+GGG - Chr7:60243750-60243769 MsG0780039230.01.T01:intron 35.0%
ATGAAATCATGAAACTCCCA+AGG + Chr7:60245777-60245796 None:intergenic 35.0%
ATGAGATACCATTGTGGTAA+GGG + Chr7:60244994-60245013 None:intergenic 35.0%
ATTATCAAGGGTGATATTGG+TGG - Chr7:60242276-60242295 MsG0780039230.01.T01:CDS 35.0%
CACTAGATAGGATTGAATGT+AGG + Chr7:60242868-60242887 None:intergenic 35.0%
CATATTCCATGAAACAAGCA+AGG + Chr7:60243126-60243145 None:intergenic 35.0%
CATCAACTTGGTTGATTGTA+CGG - Chr7:60246322-60246341 MsG0780039230.01.T01:CDS 35.0%
CTCCAACATTGCATTAATAC+AGG + Chr7:60245876-60245895 None:intergenic 35.0%
CTGCATCATATAGAGTAAAC+AGG + Chr7:60243779-60243798 None:intergenic 35.0%
CTGTATTAATGCAATGTTGG+AGG - Chr7:60245874-60245893 MsG0780039230.01.T01:CDS 35.0%
CTGTTTACTCTATATGATGC+AGG - Chr7:60243777-60243796 MsG0780039230.01.T01:intron 35.0%
GCCTAATGGAATTGGAAAAT+AGG - Chr7:60247405-60247424 MsG0780039230.01.T01:CDS 35.0%
GGAACATATACAACTGATAG+AGG + Chr7:60244145-60244164 None:intergenic 35.0%
GTTCTATGAAACACAAACAC+CGG - Chr7:60242376-60242395 MsG0780039230.01.T01:CDS 35.0%
TAAAGAAACCCTTACCACAA+TGG - Chr7:60244983-60245002 MsG0780039230.01.T01:intron 35.0%
TACTCTATATGATGCAGGAT+CGG - Chr7:60243782-60243801 MsG0780039230.01.T01:intron 35.0%
TAGAGGTGAAGGATTATCAA+GGG - Chr7:60242264-60242283 MsG0780039230.01.T01:CDS 35.0%
TAGCAGAAGTTTGGAGATTA+TGG - Chr7:60242522-60242541 MsG0780039230.01.T01:intron 35.0%
TAGGTTCATTGCTCATTCTT+TGG - Chr7:60243536-60243555 MsG0780039230.01.T01:CDS 35.0%
TCAACCATAACAATCATGGA+AGG + Chr7:60247105-60247124 None:intergenic 35.0%
TCAAGGATCACGAATAAATG+CGG - Chr7:60243075-60243094 MsG0780039230.01.T01:CDS 35.0%
TCAATACTCAATGAGGCTTA+CGG - Chr7:60244049-60244068 MsG0780039230.01.T01:CDS 35.0%
TCTTTCTGCATTTCAAGCTT+TGG - Chr7:60241908-60241927 MsG0780039230.01.T01:three_prime_UTR 35.0%
TGAGCAATGAACCTATTAAC+GGG + Chr7:60243531-60243550 None:intergenic 35.0%
TTAAAACAGGCTATAGCAAG+AGG - Chr7:60245632-60245651 MsG0780039230.01.T01:intron 35.0%
TTAGAGGTGAAGGATTATCA+AGG - Chr7:60242263-60242282 MsG0780039230.01.T01:CDS 35.0%
TTCAGTTCTCCAGTTTAACA+CGG - Chr7:60246377-60246396 MsG0780039230.01.T01:CDS 35.0%
TTCATTAGAACAAAGATCGG+TGG + Chr7:60246486-60246505 None:intergenic 35.0%
TTGAATGTAACCACACATGT+TGG - Chr7:60244293-60244312 MsG0780039230.01.T01:intron 35.0%
! AAAGTATCCGGGATATAACT+GGG + Chr7:60245038-60245057 None:intergenic 35.0%
! AACACTTGGTGGTACTAAAT+AGG - Chr7:60242708-60242727 MsG0780039230.01.T01:CDS 35.0%
! ACACTTGGTGGTACTAAATA+GGG - Chr7:60242709-60242728 MsG0780039230.01.T01:CDS 35.0%
! ATTGCAAACCATTCTAGTTG+AGG - Chr7:60243274-60243293 MsG0780039230.01.T01:intron 35.0%
! CATGGAGAGATCTCATTTTA+TGG - Chr7:60246794-60246813 MsG0780039230.01.T01:intron 35.0%
! CTTCATCGATTAGATGAAGT+TGG - Chr7:60243746-60243765 MsG0780039230.01.T01:intron 35.0%
! CTTTGAATCACTCTAGAAGA+AGG + Chr7:60245668-60245687 None:intergenic 35.0%
! GCAAACACAATCTAAAACCA+TGG + Chr7:60242963-60242982 None:intergenic 35.0%
! GCATACATTCTCCATTGTTT+TGG + Chr7:60244885-60244904 None:intergenic 35.0%
! GCATCGATACTTCTTATAGA+AGG - Chr7:60242802-60242821 MsG0780039230.01.T01:intron 35.0%
! GTATATGATTTTACAAGGCC+AGG + Chr7:60246294-60246313 None:intergenic 35.0%
! TTCATGGAAGGTTTTACTTG+TGG - Chr7:60244175-60244194 MsG0780039230.01.T01:intron 35.0%
! TTTGAAACTGGAATGTTTGG+AGG + Chr7:60242106-60242125 None:intergenic 35.0%
!! AAGAAGTATCGATGCTACAT+AGG + Chr7:60242797-60242816 None:intergenic 35.0%
!! ATTCTGGCTTAGTGAGAATT+GGG - Chr7:60247346-60247365 MsG0780039230.01.T01:intron 35.0%
!! GCATTTCAAGCTTTGGATAT+TGG - Chr7:60241915-60241934 MsG0780039230.01.T01:three_prime_UTR 35.0%
!!! CATGCCTTCTTGTTTTTGTA+TGG - Chr7:60244936-60244955 MsG0780039230.01.T01:intron 35.0%
!!! CTGTTATTAGTTTTTCCAGG+TGG - Chr7:60244831-60244850 MsG0780039230.01.T01:CDS 35.0%
AAAGCCTTCTTAGCAAACCT+TGG - Chr7:60245216-60245235 MsG0780039230.01.T01:intron 40.0%
AAGCCTTCTTAGCAAACCTT+GGG - Chr7:60245217-60245236 MsG0780039230.01.T01:intron 40.0%
ACATAGCAGCTATAGTGTAG+CGG + Chr7:60242766-60242785 None:intergenic 40.0%
ACATATCCATCCAGTCACAT+TGG + Chr7:60243850-60243869 None:intergenic 40.0%
ACATGCTTACCGTGTTAAAC+TGG + Chr7:60246389-60246408 None:intergenic 40.0%
ACATTCACGGAGAAATGTCT+AGG - Chr7:60243716-60243735 MsG0780039230.01.T01:intron 40.0%
AGATTTCCAAGAGATGCCAA+AGG + Chr7:60245064-60245083 None:intergenic 40.0%
AGCAAGAATGACATGCCTTT+AGG + Chr7:60243896-60243915 None:intergenic 40.0%
AGCATTGCACTTCTGATTGA+AGG + Chr7:60244346-60244365 None:intergenic 40.0%
AGCCTCTATTTGACAACACT+TGG - Chr7:60242694-60242713 MsG0780039230.01.T01:CDS 40.0%
AGGATGCTTCAATTGCAACA+AGG - Chr7:60246695-60246714 MsG0780039230.01.T01:intron 40.0%
AGTCACTTCAAGTCTCCTAA+AGG - Chr7:60243878-60243897 MsG0780039230.01.T01:intron 40.0%
ATAGCAATGGTACTGCTAAG+AGG - Chr7:60242305-60242324 MsG0780039230.01.T01:CDS 40.0%
ATGCCATCCATCTTGTCTAA+GGG + Chr7:60246777-60246796 None:intergenic 40.0%
CAAGGATCACGAATAAATGC+GGG - Chr7:60243076-60243095 MsG0780039230.01.T01:CDS 40.0%
CATCTTTAGATGGGTCTCAA+AGG - Chr7:60244706-60244725 MsG0780039230.01.T01:intron 40.0%
CATGAGATACCATTGTGGTA+AGG + Chr7:60244995-60245014 None:intergenic 40.0%
CATGGCAACCAACAGTATTA+TGG + Chr7:60246238-60246257 None:intergenic 40.0%
CTCTATTTGACAACACTTGG+TGG - Chr7:60242697-60242716 MsG0780039230.01.T01:CDS 40.0%
GAAGTTGTAGCTCAATTGGT+TGG - Chr7:60246138-60246157 MsG0780039230.01.T01:intron 40.0%
GAGCTTATGGAAACCACTTA+TGG - Chr7:60245295-60245314 MsG0780039230.01.T01:intron 40.0%
GCATTGCACTTCTGATTGAA+GGG + Chr7:60244345-60244364 None:intergenic 40.0%
GTAATTACCCCGACACATAT+CGG - Chr7:60242451-60242470 MsG0780039230.01.T01:intron 40.0%
GTGCATGTCAATACTCAATG+AGG - Chr7:60244042-60244061 MsG0780039230.01.T01:CDS 40.0%
TAAAATTCCCCTTCACTTGC+AGG - Chr7:60244486-60244505 MsG0780039230.01.T01:intron 40.0%
TAGGAGACTTGAAGTGACTA+TGG + Chr7:60243877-60243896 None:intergenic 40.0%
TATGCTAATGGTAGGAAGCT+CGG - Chr7:60246048-60246067 MsG0780039230.01.T01:intron 40.0%
TCACAGCACCATAATACTGT+TGG - Chr7:60246227-60246246 MsG0780039230.01.T01:intron 40.0%
TCGACGATGATCCAAAACAA+TGG - Chr7:60244871-60244890 MsG0780039230.01.T01:intron 40.0%
TGCAACATCTTCCCGTTAAT+AGG - Chr7:60243517-60243536 MsG0780039230.01.T01:intron 40.0%
TGTTAGTGTCCGATATGTGT+CGG + Chr7:60242463-60242482 None:intergenic 40.0%
TTCCAATTCCATTAGGCTAC+TGG + Chr7:60247402-60247421 None:intergenic 40.0%
TTGGGAAGTTGTAGCTCAAT+TGG - Chr7:60246134-60246153 MsG0780039230.01.T01:intron 40.0%
TTGGTGGAGAGATATAGCAA+TGG - Chr7:60242292-60242311 MsG0780039230.01.T01:CDS 40.0%
TTGTACGGCTTCTTCATCTT+TGG - Chr7:60246337-60246356 MsG0780039230.01.T01:CDS 40.0%
TTTAATCCTATCTGGAAGCC+AGG + Chr7:60243357-60243376 None:intergenic 40.0%
TTTAGATGGGTCTCAAAGGA+TGG - Chr7:60244710-60244729 MsG0780039230.01.T01:intron 40.0%
TTTCTTCCTTTGGCATCTCT+TGG - Chr7:60245055-60245074 MsG0780039230.01.T01:intron 40.0%
! CAATCTAAAACCATGGCAAC+AGG + Chr7:60242956-60242975 None:intergenic 40.0%
! CACCAAGTGTTGTCAAATAG+AGG + Chr7:60242699-60242718 None:intergenic 40.0%
! CATCGATTAGATGAAGTTGG+AGG - Chr7:60243749-60243768 MsG0780039230.01.T01:intron 40.0%
! GTTTTACATTCCACTGTTCC+AGG - Chr7:60246588-60246607 MsG0780039230.01.T01:intron 40.0%
! TGGTTTGGGCATATTGATAC+TGG - Chr7:60246164-60246183 MsG0780039230.01.T01:intron 40.0%
!! CAATTGGTTGGTCTTGGTTT+GGG - Chr7:60246150-60246169 MsG0780039230.01.T01:intron 40.0%
!! CATTCTGGCTTAGTGAGAAT+TGG - Chr7:60247345-60247364 MsG0780039230.01.T01:intron 40.0%
!! GAAAGTATCCGGGATATAAC+TGG + Chr7:60245039-60245058 None:intergenic 40.0%
!! GATAGGTTCTAGAAGGTTCT+TGG - Chr7:60245139-60245158 MsG0780039230.01.T01:intron 40.0%
!! GTACTTTTAGGGAGAGCTTA+TGG - Chr7:60245282-60245301 MsG0780039230.01.T01:intron 40.0%
!! GTGAAGGGGAATTTTAACAC+AGG + Chr7:60244482-60244501 None:intergenic 40.0%
!! TCAATTGGTTGGTCTTGGTT+TGG - Chr7:60246149-60246168 MsG0780039230.01.T01:intron 40.0%
!! TGCCAAAGGAAGAAAGTATC+CGG + Chr7:60245050-60245069 None:intergenic 40.0%
!!! CTATTTTGACCAAAACGCCA+AGG - Chr7:60242994-60243013 MsG0780039230.01.T01:CDS 40.0%
!!! TTCTTTTAGCTTTTGACCGC+AGG - Chr7:60246263-60246282 MsG0780039230.01.T01:intron 40.0%
AACTGGACATAGTCTTTGCC+AGG - Chr7:60245117-60245136 MsG0780039230.01.T01:intron 45.0%
ACATGTTGGTATCCGACAAC+CGG - Chr7:60244307-60244326 MsG0780039230.01.T01:intron 45.0%
ACGGTAAGCATGTACTGTGT+GGG - Chr7:60246396-60246415 MsG0780039230.01.T01:CDS 45.0%
AGCCAGGATAGTCTTTCATC+AGG + Chr7:60243341-60243360 None:intergenic 45.0%
AGCCTTCTTAGCAAACCTTG+GGG - Chr7:60245218-60245237 MsG0780039230.01.T01:intron 45.0%
AGGATAGGTCTCTGCAAAAC+AGG - Chr7:60243297-60243316 MsG0780039230.01.T01:intron 45.0%
AGGTCTCTGCAAAACAGGTT+TGG - Chr7:60243302-60243321 MsG0780039230.01.T01:intron 45.0%
AGTGAGAATTGGGAGAGCAA+GGG - Chr7:60247356-60247375 MsG0780039230.01.T01:intron 45.0%
ATCCATCCAGTCACATTGGT+AGG + Chr7:60243846-60243865 None:intergenic 45.0%
ATTCTACCTGCAGGATTTCC+CGG - Chr7:60243383-60243402 MsG0780039230.01.T01:CDS 45.0%
CAACCTATGAAGCACATGCA+CGG - Chr7:60244213-60244232 MsG0780039230.01.T01:intron 45.0%
CATGCCATCCATCTTGTCTA+AGG + Chr7:60246778-60246797 None:intergenic 45.0%
CCAATGGGTCACATGTAAGT+AGG - Chr7:60245995-60246014 MsG0780039230.01.T01:intron 45.0%
CCTACTTACATGTGACCCAT+TGG + Chr7:60245998-60246017 None:intergenic 45.0%
CCTATCCTCCTCAACTAGAA+TGG + Chr7:60243285-60243304 None:intergenic 45.0%
CTCCTGATGAAAGACTATCC+TGG - Chr7:60243336-60243355 MsG0780039230.01.T01:CDS 45.0%
CTGAATGTAACCTGGAACAG+TGG + Chr7:60246601-60246620 None:intergenic 45.0%
CTGACAACCCAGTTATATCC+CGG - Chr7:60245028-60245047 MsG0780039230.01.T01:intron 45.0%
CTTAGACAAGATGGATGGCA+TGG - Chr7:60246776-60246795 MsG0780039230.01.T01:intron 45.0%
GAAGCATATGGCAGACATTC+TGG - Chr7:60247330-60247349 MsG0780039230.01.T01:intron 45.0%
GACATAGTCTTTGCCAGGAT+AGG - Chr7:60245122-60245141 MsG0780039230.01.T01:intron 45.0%
GGCAGTAAACACAAAAGCCT+TGG + Chr7:60243014-60243033 None:intergenic 45.0%
GGTCTCTGCAAAACAGGTTT+GGG - Chr7:60243303-60243322 MsG0780039230.01.T01:intron 45.0%
GTCAATCCAAACAAACCCCA+AGG + Chr7:60245236-60245255 None:intergenic 45.0%
GTCTCTGCAAAACAGGTTTG+GGG - Chr7:60243304-60243323 MsG0780039230.01.T01:intron 45.0%
GTTAGTGTCCGATATGTGTC+GGG + Chr7:60242462-60242481 None:intergenic 45.0%
TAATTACCGGGAAATCCTGC+AGG + Chr7:60243392-60243411 None:intergenic 45.0%
TACGTGTCATAATGGTGTGC+AGG - Chr7:60246907-60246926 MsG0780039230.01.T01:intron 45.0%
TAGCTGATGCCTATGATACG+AGG + Chr7:60242904-60242923 None:intergenic 45.0%
TAGTGAGAATTGGGAGAGCA+AGG - Chr7:60247355-60247374 MsG0780039230.01.T01:intron 45.0%
TCAACTTGCCAGTAGCCTAA+TGG - Chr7:60247391-60247410 MsG0780039230.01.T01:CDS 45.0%
TCACCCTTAGACAAGATGGA+TGG - Chr7:60246771-60246790 MsG0780039230.01.T01:intron 45.0%
TCATAATGGTGTGCAGGTAG+AGG - Chr7:60246913-60246932 MsG0780039230.01.T01:intron 45.0%
TCCATCCAGTCACATTGGTA+GGG + Chr7:60243845-60243864 None:intergenic 45.0%
TCCCGGATACTTTCTTCCTT+TGG - Chr7:60245045-60245064 MsG0780039230.01.T01:intron 45.0%
TCTCGGTATTGCGAAGCATA+TGG - Chr7:60247318-60247337 MsG0780039230.01.T01:intron 45.0%
TGACGTGTCAGTATCCTATC+CGG + Chr7:60244242-60244261 None:intergenic 45.0%
TGCCAGTAGCCTAATGGAAT+TGG - Chr7:60247397-60247416 MsG0780039230.01.T01:CDS 45.0%
TGCTGCATGAGATACCATTG+TGG + Chr7:60245000-60245019 None:intergenic 45.0%
TGGTGGTACTAAATAGGGTG+TGG - Chr7:60242714-60242733 MsG0780039230.01.T01:CDS 45.0%
TTAGTGTCCGATATGTGTCG+GGG + Chr7:60242461-60242480 None:intergenic 45.0%
TTGTCGGATACCAACATGTG+TGG + Chr7:60244306-60244325 None:intergenic 45.0%
! ACACAAAAGCCTTGGCGTTT+TGG + Chr7:60243006-60243025 None:intergenic 45.0%
! AGCAAACCTTGGGGTTTGTT+TGG - Chr7:60245227-60245246 MsG0780039230.01.T01:intron 45.0%
! ATGTACTGTGTGGGCTAATG+TGG - Chr7:60246405-60246424 MsG0780039230.01.T01:CDS 45.0%
! CCATTCTAGTTGAGGAGGAT+AGG - Chr7:60243282-60243301 MsG0780039230.01.T01:intron 45.0%
! GCAAACCATTCTAGTTGAGG+AGG - Chr7:60243277-60243296 MsG0780039230.01.T01:intron 45.0%
!! AACCCCAAGGTTTGCTAAGA+AGG + Chr7:60245223-60245242 None:intergenic 45.0%
!! GAACCTTCTAGAACCTATCC+TGG + Chr7:60245138-60245157 None:intergenic 45.0%
!! GCCAAAGGAAGAAAGTATCC+GGG + Chr7:60245049-60245068 None:intergenic 45.0%
!! GTAGCTCAATTGGTTGGTCT+TGG - Chr7:60246144-60246163 MsG0780039230.01.T01:intron 45.0%
!! GTTGGTGTTGGTTCTTTCTC+TGG - Chr7:60244511-60244530 MsG0780039230.01.T01:intron 45.0%
!! TTGCCAGGATAGGTTCTAGA+AGG - Chr7:60245132-60245151 MsG0780039230.01.T01:intron 45.0%
!!! ATAAATAATTATGAATTTTT+AGG + Chr7:60246865-60246884 None:intergenic 5.0%
ACCAACAGCCTGCAAGTGAA+GGG + Chr7:60244497-60244516 None:intergenic 50.0%
ACCATGGCAACAGGCAAACA+CGG + Chr7:60242947-60242966 None:intergenic 50.0%
AGATTTCCAAATCGCCCACC+TGG + Chr7:60244849-60244868 None:intergenic 50.0%
ATGCAGAAAGAGCCACGAGT+CGG + Chr7:60241899-60241918 None:intergenic 50.0%
CACGGTAAGCATGTACTGTG+TGG - Chr7:60246395-60246414 MsG0780039230.01.T01:CDS 50.0%
CAGTTCCCTACCAATGTGAC+TGG - Chr7:60243837-60243856 MsG0780039230.01.T01:intron 50.0%
CGGTTCACCCTTAGACAAGA+TGG - Chr7:60246767-60246786 MsG0780039230.01.T01:intron 50.0%
GACTATCCTGGCTTCCAGAT+AGG - Chr7:60243348-60243367 MsG0780039230.01.T01:CDS 50.0%
GGTTGGAGCTACAAGTGTCT+CGG - Chr7:60247301-60247320 MsG0780039230.01.T01:intron 50.0%
TCCCTACCAATGTGACTGGA+TGG - Chr7:60243841-60243860 MsG0780039230.01.T01:intron 50.0%
TCTTAAGCGTGCTCGCATAC+TGG - Chr7:60246554-60246573 MsG0780039230.01.T01:intron 50.0%
TGGGTCTCAAAGGATGGCAT+TGG - Chr7:60244716-60244735 MsG0780039230.01.T01:intron 50.0%
TGTCCGTGCATGTGCTTCAT+AGG + Chr7:60244219-60244238 None:intergenic 50.0%
! AAGGATGGCATTGGAGCTGT+CGG - Chr7:60244725-60244744 MsG0780039230.01.T01:intron 50.0%
! ACTTCATTGGCAGTGCTGGA+AGG - Chr7:60244907-60244926 MsG0780039230.01.T01:intron 50.0%
! GCTGATGGACATGCCATAAG+TGG + Chr7:60245311-60245330 None:intergenic 50.0%
! GGGCGCTTATTCATTGGTCT+GGG - Chr7:60244746-60244765 MsG0780039230.01.T01:intron 50.0%
! GTTTTTCCAGGTGGGCGATT+TGG - Chr7:60244840-60244859 MsG0780039230.01.T01:CDS 50.0%
! TTTTGACCGCAGGATACACC+TGG - Chr7:60246273-60246292 MsG0780039230.01.T01:intron 50.0%
!! ATGGTTGGTTTGTGCGCACT+TGG - Chr7:60243975-60243994 MsG0780039230.01.T01:intron 50.0%
!! CAGTGTCGATGTGTCGTATC+CGG + Chr7:60242398-60242417 None:intergenic 50.0%
ACAAGGCCAGGTGTATCCTG+CGG + Chr7:60246282-60246301 None:intergenic 55.0%
CACCAACAGCCTGCAAGTGA+AGG + Chr7:60244498-60244517 None:intergenic 55.0%
CACTTGCAGGCTGTTGGTGT+TGG - Chr7:60244499-60244518 MsG0780039230.01.T01:intron 55.0%
CCAACAGCCTGCAAGTGAAG+GGG + Chr7:60244496-60244515 None:intergenic 55.0%
CCTGTCAAGTGTCCGGTTGT+CGG + Chr7:60244322-60244341 None:intergenic 55.0%
CGGATACGACACATCGACAC+TGG - Chr7:60242396-60242415 MsG0780039230.01.T01:intron 55.0%
CGGGCGCTTATTCATTGGTC+TGG - Chr7:60244745-60244764 MsG0780039230.01.T01:intron 55.0%
CGTTCGACTCTCGAAAACCC+CGG + Chr7:60247581-60247600 None:intergenic 55.0%
GAAAGAGCCACGAGTCGGAT+CGG + Chr7:60241894-60241913 None:intergenic 55.0%
GCAGACTTCATTGGCAGTGC+TGG - Chr7:60244903-60244922 MsG0780039230.01.T01:intron 55.0%
GCTGTCGGGCGCTTATTCAT+TGG - Chr7:60244740-60244759 MsG0780039230.01.T01:intron 55.0%
TCTGGGAGAGGTAGCAGCAA+AGG - Chr7:60245709-60245728 MsG0780039230.01.T01:intron 55.0%
TGAAGCACATGCACGGACAC+CGG - Chr7:60244220-60244239 MsG0780039230.01.T01:intron 55.0%
TGAAGGGCCTGTCAAGTGTC+CGG + Chr7:60244329-60244348 None:intergenic 55.0%
! AGGATGGCATTGGAGCTGTC+GGG - Chr7:60244726-60244745 MsG0780039230.01.T01:intron 55.0%
AGCAGCAGAAGCAGCTGCTG+TGG + Chr7:60244539-60244558 None:intergenic 60.0%
CACATGCACGGACACCGGAT+AGG - Chr7:60244225-60244244 MsG0780039230.01.T01:intron 60.0%
CCCCTTCACTTGCAGGCTGT+TGG - Chr7:60244493-60244512 MsG0780039230.01.T01:intron 60.0%
CCGACAACCGGACACTTGAC+AGG - Chr7:60244319-60244338 MsG0780039230.01.T01:intron 60.0%
CTGCTTCTGCTGCTGCCATC+AGG - Chr7:60244545-60244564 MsG0780039230.01.T01:intron 60.0%
GCCGTGTTTGCCTGTTGCCA+TGG - Chr7:60242943-60242962 MsG0780039230.01.T01:CDS 60.0%
! AGAAGCTCCGATCCGACTCG+TGG - Chr7:60241884-60241903 MsG0780039230.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60241860 60247850 60241860 ID=MsG0780039230.01;Name=MsG0780039230.01
Chr7 mRNA 60241860 60247850 60241860 ID=MsG0780039230.01.T01;Parent=MsG0780039230.01;Name=MsG0780039230.01.T01;_AED=0.17;_eAED=0.17;_QI=134|0.92|0.85|1|1|1|14|318|519
Chr7 exon 60241860 60242408 60241860 ID=MsG0780039230.01.T01:exon:16170;Parent=MsG0780039230.01.T01
Chr7 exon 60242689 60242781 60242689 ID=MsG0780039230.01.T01:exon:16169;Parent=MsG0780039230.01.T01
Chr7 exon 60242895 60243161 60242895 ID=MsG0780039230.01.T01:exon:16168;Parent=MsG0780039230.01.T01
Chr7 exon 60243312 60243425 60243312 ID=MsG0780039230.01.T01:exon:16167;Parent=MsG0780039230.01.T01
Chr7 exon 60243525 60243584 60243525 ID=MsG0780039230.01.T01:exon:16166;Parent=MsG0780039230.01.T01
Chr7 exon 60243980 60244069 60243980 ID=MsG0780039230.01.T01:exon:16165;Parent=MsG0780039230.01.T01
Chr7 exon 60244620 60244692 60244620 ID=MsG0780039230.01.T01:exon:16164;Parent=MsG0780039230.01.T01
Chr7 exon 60244782 60244860 60244782 ID=MsG0780039230.01.T01:exon:16163;Parent=MsG0780039230.01.T01
Chr7 exon 60244949 60244995 60244949 ID=MsG0780039230.01.T01:exon:16162;Parent=MsG0780039230.01.T01
Chr7 exon 60245144 60245202 60245144 ID=MsG0780039230.01.T01:exon:16161;Parent=MsG0780039230.01.T01
Chr7 exon 60245832 60245911 60245832 ID=MsG0780039230.01.T01:exon:16160;Parent=MsG0780039230.01.T01
Chr7 exon 60246306 60246460 60246306 ID=MsG0780039230.01.T01:exon:16159;Parent=MsG0780039230.01.T01
Chr7 exon 60247384 60247443 60247384 ID=MsG0780039230.01.T01:exon:16158;Parent=MsG0780039230.01.T01
Chr7 exon 60247565 60247850 60247565 ID=MsG0780039230.01.T01:exon:16157;Parent=MsG0780039230.01.T01
Chr7 five_prime_UTR 60247717 60247850 60247717 ID=MsG0780039230.01.T01:five_prime_utr;Parent=MsG0780039230.01.T01
Chr7 CDS 60247565 60247716 60247565 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60247384 60247443 60247384 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60246306 60246460 60246306 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60245832 60245911 60245832 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60245144 60245202 60245144 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60244949 60244995 60244949 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60244782 60244860 60244782 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60244620 60244692 60244620 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60243980 60244069 60243980 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60243525 60243584 60243525 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60243312 60243425 60243312 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60242895 60243161 60242895 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60242689 60242781 60242689 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 CDS 60242178 60242408 60242178 ID=MsG0780039230.01.T01:cds;Parent=MsG0780039230.01.T01
Chr7 three_prime_UTR 60241860 60242177 60241860 ID=MsG0780039230.01.T01:three_prime_utr;Parent=MsG0780039230.01.T01
Gene Sequence

>MsG0780039230.01.T01

ATGTCTCAAACTTTGCAATTTTCATTATCTTCAACTGCATTCAATTCTTCTTCACTGAATTTGAAGAAGTTGAAGAAAGTTAAGCCTCGTAGTTTTCAAATTCTATGCTCCTCCAAACATTCCAGTTTCAAAGATGATGATGTTAATAAAGGAGGTGAAGGATTATCAAGGGTGATATTGGTGGAGAGATATAGCAATGGTACTGCTAAGAGATACGTAATTGGTGATGATTCGCAATTGCAAACCATTCTAGTTGAGGAGGATAGGTCTCTGCAAAACAGGTTTGGGGTTTTGCATTCTCCTGATGAAAGACTATCCTGGCTTCCAGATAGGATTAAAGATTTTATTCTACCTGCAGGATTTCCCGGATCGGTCTCAGATGATTATTTGCAATACATGTTACTACAGTTCCCTACCAATGTGACTGGATGGATATGTCACACCATAGCTGTTGGTGTTGGTTCTTTCTCTGGAACCACAGCAGCTGCTTCTGCTGCTGCCATCAGATGGGTCTCAAAGGATGGCATTGGAGCTGTCGGGCGCTTATTCATTGGTGGGCGATTTGGAAATCTTTTCGACGATGATCCAAAACAATGGAGAATGTATGCAGACTTCATTGGCAGTGCTGGAAGCATTTTTGATCTGACAACCCAGTTATATCCCGGATACTTTCTTCCTTTGGCATCTCTTGGAAATCTTACTAAGGCTATAGCAAGAGGACTAAAAGATCCTTCTTCTAGAGTGATTCAAAGCCACTTTGCAATTTCAGTAAATCTGGGAGAGGTAGCAGCAAAGGAAGAAGTTTGGGAAGTTGTAGCTCAATTGGTTGGTCTTGGTTTGGGCATATTGATACTGGATACACCTGGCCTTGTAAAATCATATACTGTACTTTCATCAACTTGGTTGATTGTACGGCTTCTTCATCTTTGGCTACGCTACGAATCACTTTCAGTTCTCCAGTTTAACACGATAAATCTTAAGCGTGCTCGCATACTGGTAAAATCACATGTTTTACATTCCACTGTTCCAGGTTACATTCAGATAAATACAGTAGTTTTCTTTAGAGTTATTACTCTTCAAGGTAGTTTTTTCAAGTTTCCGAATGGAATTATTTCAGGATGCTTCAATTGCAACAAGGAAGAGAATATATTAGTGTGGTCACAATTCATGAAGCCAATAATAATTTTCGGTTCACCCTTAGACAAGATGGATGGCATGGAGAGATCTCATTTTATGGTAGAGGCTCTTCTAAAGTTATATGCAAATGAGAAATATATTCTTGTGGTAAATCAGCAACTAGATGATTTGAAGTTTTATGTTTCTTTCAAGGTTGGAGCTACAAGTGTCTCGGTATTGCGAAGCATATGGCAGACATTCTGGCTTAGTGAGAATTGGGAGAGCAAGGGTAATGTTTGTGATCAACTTGCCAGTAGCCTAATGGAATTGGAAAATAGGTTTGATGATTTCATTCAAAAGTTGAAAGATGCTGAATGGGATACTCAACAATTAAATTTGAAGGTTCCCAAAGAAATTTCAATCGATGATATCAATGCTTTTTAA

Protein sequence

>MsG0780039230.01.T01

MSQTLQFSLSSTAFNSSSLNLKKLKKVKPRSFQILCSSKHSSFKDDDVNKGGEGLSRVILVERYSNGTAKRYVIGDDSQLQTILVEEDRSLQNRFGVLHSPDERLSWLPDRIKDFILPAGFPGSVSDDYLQYMLLQFPTNVTGWICHTIAVGVGSFSGTTAAASAAAIRWVSKDGIGAVGRLFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAIARGLKDPSSRVIQSHFAISVNLGEVAAKEEVWEVVAQLVGLGLGILILDTPGLVKSYTVLSSTWLIVRLLHLWLRYESLSVLQFNTINLKRARILVKSHVLHSTVPGYIQINTVVFFRVITLQGSFFKFPNGIISGCFNCNKEENILVWSQFMKPIIIFGSPLDKMDGMERSHFMVEALLKLYANEKYILVVNQQLDDLKFYVSFKVGATSVSVLRSIWQTFWLSENWESKGNVCDQLASSLMELENRFDDFIQKLKDAEWDTQQLNLKVPKEISIDDINAF*