AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035743.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035743.01.T01 MTR_6g087040 97.647 510 12 0 1 510 1 510 0.0 1018
MsG0680035743.01.T01 MTR_6g088375 97.647 510 12 0 1 510 1 510 0.0 1018
MsG0680035743.01.T01 MTR_8g102860 76.660 497 113 1 13 506 13 509 0.0 791
MsG0680035743.01.T01 MTR_8g102860 76.368 457 105 1 53 506 1 457 0.0 720
MsG0680035743.01.T01 MTR_0204s0020 58.215 493 202 3 8 499 3 492 0.0 613
MsG0680035743.01.T01 MTR_0204s0020 57.809 493 201 4 8 499 3 489 0.0 603
MsG0680035743.01.T01 MTR_7g091690 58.683 501 202 4 1 499 1 498 0.0 599
MsG0680035743.01.T01 MTR_5g094760 57.115 506 212 4 1 504 1 503 0.0 595
MsG0680035743.01.T01 MTR_0204s0040 55.624 489 215 2 14 502 17 503 0.0 588
MsG0680035743.01.T01 MTR_4g116770 55.624 489 215 2 14 502 213 699 0.0 587
MsG0680035743.01.T01 MTR_4g116790 55.200 500 220 3 3 502 6 501 0.0 576
MsG0680035743.01.T01 MTR_5g006070 57.317 492 203 6 18 504 14 503 0.0 564
MsG0680035743.01.T01 MTR_3g008160 53.347 493 227 3 18 508 15 506 0.0 530
MsG0680035743.01.T01 MTR_1g038630 52.756 508 232 5 1 505 1 503 0.0 523
MsG0680035743.01.T01 MTR_5g006070 56.674 457 191 6 53 504 1 455 0.0 518
MsG0680035743.01.T01 MTR_1g104780 53.360 506 227 6 1 502 1 501 1.89e-177 509
MsG0680035743.01.T01 MTR_1g104750 50.400 500 241 5 1 497 1 496 4.37e-177 507
MsG0680035743.01.T01 MTR_5g082540 52.361 487 227 4 18 501 15 499 3.48e-176 506
MsG0680035743.01.T01 MTR_0009s0370 52.439 492 228 4 18 504 13 503 7.82e-176 504
MsG0680035743.01.T01 MTR_1g104770 50.299 501 241 6 1 497 1 497 9.32e-175 501
MsG0680035743.01.T01 MTR_3g093010 52.437 513 231 7 1 505 1 508 4.16e-174 500
MsG0680035743.01.T01 MTR_5g041550 51.845 515 237 6 1 509 1 510 8.66e-174 499
MsG0680035743.01.T01 MTR_3g023480 51.710 497 230 5 15 504 10 503 1.75e-173 499
MsG0680035743.01.T01 MTR_4g091370 53.024 496 228 3 18 509 15 509 2.40e-171 493
MsG0680035743.01.T01 MTR_3g008160 53.057 458 212 3 53 508 1 457 1.30e-169 487
MsG0680035743.01.T01 MTR_3g008170 50.101 493 238 5 21 506 18 509 1.38e-169 489
MsG0680035743.01.T01 MTR_1g038600 49.901 507 230 6 1 505 1 485 2.37e-166 480
MsG0680035743.01.T01 MTR_3g007910 48.444 514 225 7 1 510 1 478 2.82e-160 464
MsG0680035743.01.T01 MTR_4g090600 52.941 493 227 4 18 506 15 506 6.65e-160 464
MsG0680035743.01.T01 MTR_3g074390 46.955 509 261 8 1 503 1 506 2.27e-159 463
MsG0680035743.01.T01 MTR_3g074410 45.365 507 269 8 1 503 1 503 1.25e-157 458
MsG0680035743.01.T01 MTR_3g074270 47.012 502 239 7 1 500 1 477 4.64e-156 453
MsG0680035743.01.T01 MTR_4g116790 55.220 364 159 3 3 366 6 365 1.00e-149 433
MsG0680035743.01.T01 MTR_3g093060 49.666 449 219 4 53 495 1 448 5.14e-146 427
MsG0680035743.01.T01 MTR_3g074380 46.612 369 192 5 1 367 1 366 2.73e-110 332
MsG0680035743.01.T01 MTR_3g074370 42.405 316 176 6 191 502 20 333 8.58e-88 273
MsG0680035743.01.T01 MTR_3g074340 42.089 316 177 6 191 502 20 333 1.35e-87 273
MsG0680035743.01.T01 MTR_3g074320 42.089 316 177 6 191 502 20 333 2.95e-87 272
MsG0680035743.01.T01 MTR_3g074400 36.044 455 232 11 53 483 1 420 1.37e-76 247
MsG0680035743.01.T01 MTR_6g088450 26.722 479 309 12 13 478 50 499 3.85e-53 187
MsG0680035743.01.T01 MTR_8g103500 26.295 502 336 11 21 510 13 492 7.18e-53 186
MsG0680035743.01.T01 MTR_4g072030 28.310 491 302 13 28 493 26 491 1.90e-50 181
MsG0680035743.01.T01 MTR_7g005910 30.000 480 305 12 25 497 32 487 5.51e-49 176
MsG0680035743.01.T01 MTR_7g446340 27.406 478 311 12 25 492 54 505 8.22e-48 174
MsG0680035743.01.T01 MTR_6g007340 27.406 478 311 12 25 492 54 505 8.22e-48 174
MsG0680035743.01.T01 MTR_1g116660 29.303 488 314 14 25 504 34 498 8.98e-48 173
MsG0680035743.01.T01 MTR_1g116650 30.913 482 286 12 25 497 77 520 1.99e-47 172
MsG0680035743.01.T01 MTR_3g084110 28.515 505 320 14 16 508 13 488 2.66e-47 171
MsG0680035743.01.T01 MTR_6g018790 29.512 471 298 11 19 485 98 538 5.04e-47 172
MsG0680035743.01.T01 MTR_5g096000 48.663 187 73 2 1 187 1 164 6.16e-47 166
MsG0680035743.01.T01 MTR_5g096000 49.254 134 68 0 377 510 176 309 2.13e-32 126
MsG0680035743.01.T01 MTR_4g077740 29.237 472 286 11 34 485 53 496 9.44e-47 170
MsG0680035743.01.T01 MTR_3g116240 27.536 483 301 11 28 485 29 487 1.05e-46 170
MsG0680035743.01.T01 MTR_2g013310 25.934 482 323 10 19 491 46 502 2.52e-46 169
MsG0680035743.01.T01 MTR_4g069500 24.748 497 333 9 28 504 31 506 3.06e-46 169
MsG0680035743.01.T01 MTR_5g075300 27.088 491 314 9 21 489 14 482 1.19e-45 167
MsG0680035743.01.T01 MTR_4g069500 26.392 413 284 6 111 504 45 456 1.64e-45 166
MsG0680035743.01.T01 MTR_8g077890 28.904 429 281 7 92 498 65 491 2.24e-45 166
MsG0680035743.01.T01 MTR_7g082270 27.692 455 301 8 32 485 71 498 9.91e-45 164
MsG0680035743.01.T01 MTR_2g013310 28.462 390 265 8 111 491 45 429 1.11e-44 163
MsG0680035743.01.T01 MTR_6g087910 29.288 379 251 6 111 485 117 482 2.35e-41 155
MsG0680035743.01.T01 MTR_4g013205 29.024 379 252 7 111 485 103 468 2.51e-41 155
MsG0680035743.01.T01 MTR_7g082270 28.715 397 256 7 32 428 71 440 3.98e-41 154
MsG0680035743.01.T01 MTR_5g077580 26.268 552 280 16 35 492 35 553 2.21e-40 154
MsG0680035743.01.T01 MTR_1g022315 27.317 410 284 7 86 490 89 489 1.86e-39 150
MsG0680035743.01.T01 MTR_3g074330 50.000 162 70 3 1 155 1 158 3.52e-39 140
MsG0680035743.01.T01 MTR_3g074360 50.000 162 70 3 1 155 1 158 3.52e-39 140
MsG0680035743.01.T01 MTR_2g026160 31.977 344 199 9 25 355 26 347 7.77e-39 149
MsG0680035743.01.T01 MTR_1g022315 27.068 399 277 7 97 490 1 390 8.49e-39 145
MsG0680035743.01.T01 MTR_8g077310 26.395 466 306 10 26 485 47 481 1.63e-38 147
MsG0680035743.01.T01 MTR_3g074310 49.383 162 71 3 1 155 1 158 1.77e-38 139
MsG0680035743.01.T01 MTR_3g080240 28.535 396 266 10 95 485 144 527 2.49e-38 147
MsG0680035743.01.T01 MTR_8g077310 27.089 395 271 8 97 485 1 384 8.35e-38 143
MsG0680035743.01.T01 MTR_5g020270 27.494 411 281 8 86 490 90 489 9.05e-38 145
MsG0680035743.01.T01 MTR_2g048720 31.065 338 204 7 35 365 35 350 1.12e-37 146
MsG0680035743.01.T01 MTR_7g113960 29.829 409 257 12 86 485 67 454 3.80e-37 143
MsG0680035743.01.T01 MTR_5g020270 27.250 400 274 8 97 490 1 389 4.12e-37 141
MsG0680035743.01.T01 MTR_2g049020 28.986 345 217 7 35 371 35 359 1.42e-36 143
MsG0680035743.01.T01 MTR_8g077300 26.439 469 304 11 25 485 38 473 1.72e-36 141
MsG0680035743.01.T01 MTR_1g038620 42.767 159 73 2 206 364 50 190 9.60e-36 132
MsG0680035743.01.T01 MTR_7g113970 29.710 414 253 12 86 485 102 491 1.79e-35 139
MsG0680035743.01.T01 MTR_7g094450 26.355 406 277 6 86 485 80 469 2.92e-35 137
MsG0680035743.01.T01 MTR_5g019870 27.373 453 291 9 81 509 50 488 3.81e-35 137
MsG0680035743.01.T01 MTR_4g118610 29.412 408 263 10 86 485 92 482 3.23e-33 132
MsG0680035743.01.T01 MTR_5g020270 26.683 416 257 9 86 490 90 468 1.38e-32 130
MsG0680035743.01.T01 MTR_0064s0040 43.478 138 66 1 18 155 16 141 4.67e-31 118
MsG0680035743.01.T01 MTR_7g094110 26.353 425 283 10 67 485 71 471 4.84e-31 125
MsG0680035743.01.T01 MTR_4g064820 28.184 369 226 9 26 376 96 443 2.06e-29 121
MsG0680035743.01.T01 MTR_2g020710 27.094 406 273 9 87 485 1 390 3.87e-29 119
MsG0680035743.01.T01 MTR_2g020710 27.451 408 271 10 86 485 89 479 4.70e-29 120
MsG0680035743.01.T01 MTR_2g026140 29.129 333 189 10 36 355 34 332 2.88e-28 119
MsG0680035743.01.T01 MTR_8g077310 28.472 288 193 6 86 370 87 364 1.77e-27 114
MsG0680035743.01.T01 MTR_4g069500 23.585 318 224 5 205 504 1 317 2.12e-26 110
MsG0680035743.01.T01 MTR_7g113960 30.935 278 168 9 86 355 67 328 3.21e-26 110
MsG0680035743.01.T01 MTR_7g094110 24.722 449 282 11 42 485 54 451 1.31e-24 107
MsG0680035743.01.T01 MTR_3g116060 32.308 195 121 3 77 263 31 222 4.56e-22 100
MsG0680035743.01.T01 MTR_3g116060 27.686 242 155 6 260 489 484 717 1.97e-12 70.1
MsG0680035743.01.T01 MTR_7g113970 28.060 335 206 11 86 406 102 415 6.19e-22 98.6
MsG0680035743.01.T01 MTR_4g118610 28.614 339 217 10 86 416 92 413 1.18e-21 97.8
MsG0680035743.01.T01 MTR_8g073100 27.966 236 157 4 79 306 39 269 7.50e-21 96.7
MsG0680035743.01.T01 MTR_8g073100 28.444 225 141 6 278 489 488 705 6.14e-11 65.5
MsG0680035743.01.T01 MTR_5g024740 28.033 239 151 4 26 262 4 223 1.51e-20 95.9
MsG0680035743.01.T01 MTR_5g044910 30.508 177 122 1 87 262 47 223 4.78e-20 94.4
MsG0680035743.01.T01 MTR_2g020710 26.113 337 226 9 86 415 89 409 2.39e-19 90.9
MsG0680035743.01.T01 MTR_1g114280 35.065 154 79 3 350 501 21 155 2.43e-19 85.5
MsG0680035743.01.T01 MTR_2g020710 26.549 339 224 10 86 416 89 410 2.46e-19 90.9
MsG0680035743.01.T01 MTR_3g118530 32.941 170 113 1 95 263 55 224 4.34e-19 91.3
MsG0680035743.01.T01 MTR_2g020710 28.571 273 174 8 86 351 89 347 5.94e-19 89.0
MsG0680035743.01.T01 MTR_3g118530 32.941 170 113 1 95 263 55 224 9.31e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035743.01.T01 AT1G77210 71.032 504 146 0 1 504 1 504 0.0 759
MsG0680035743.01.T01 AT1G77210 71.032 504 146 0 1 504 1 504 0.0 759
MsG0680035743.01.T01 AT4G02050 59.163 502 202 3 1 501 1 500 0.0 625
MsG0680035743.01.T01 AT4G02050 59.163 502 202 3 1 501 1 500 0.0 625
MsG0680035743.01.T01 AT5G26340 56.693 508 212 6 1 504 1 504 0.0 567
MsG0680035743.01.T01 AT3G19940 51.389 504 241 3 1 502 1 502 0.0 536
MsG0680035743.01.T01 AT1G50310 51.485 505 240 4 1 502 1 503 0.0 526
MsG0680035743.01.T01 AT1G11260 52.827 513 234 5 1 509 1 509 0.0 524
MsG0680035743.01.T01 AT1G77210 69.143 350 108 0 155 504 6 355 0.0 516
MsG0680035743.01.T01 AT5G23270 53.507 499 225 6 1 495 1 496 1.99e-178 511
MsG0680035743.01.T01 AT3G19930 51.089 505 239 5 1 502 1 500 3.09e-177 508
MsG0680035743.01.T01 AT3G19930 51.089 505 239 5 1 502 1 500 3.09e-177 508
MsG0680035743.01.T01 AT4G21480 53.909 486 219 4 18 500 15 498 2.55e-174 501
MsG0680035743.01.T01 AT5G26250 48.875 489 245 4 18 504 14 499 1.51e-164 476
MsG0680035743.01.T01 AT3G05960 47.284 497 259 3 14 509 9 503 5.34e-163 472
MsG0680035743.01.T01 AT5G61520 46.217 489 255 4 21 503 19 505 8.45e-156 454
MsG0680035743.01.T01 AT1G34580 44.618 511 269 8 1 503 1 505 2.54e-148 434
MsG0680035743.01.T01 AT1G07340 46.201 487 256 6 18 501 15 498 2.10e-147 432
MsG0680035743.01.T01 AT5G61520 45.415 458 242 4 52 503 2 457 1.62e-140 413
MsG0680035743.01.T01 AT1G34580 44.444 459 243 7 53 503 1 455 5.67e-133 394
MsG0680035743.01.T01 AT1G50310 49.858 351 172 3 155 502 11 360 1.15e-120 359
MsG0680035743.01.T01 AT2G16130 29.569 487 300 9 28 492 27 492 6.03e-57 198
MsG0680035743.01.T01 AT2G16120 28.953 487 303 9 28 492 27 492 8.76e-56 195
MsG0680035743.01.T01 AT4G36670 29.839 496 300 11 30 503 21 490 3.00e-54 190
MsG0680035743.01.T01 AT2G18480 30.998 471 281 12 40 489 36 483 5.76e-54 190
MsG0680035743.01.T01 AT3G18830 27.833 503 319 12 28 509 37 516 6.24e-54 190
MsG0680035743.01.T01 AT5G59250 29.586 507 307 14 3 485 72 552 3.69e-46 169
MsG0680035743.01.T01 AT4G16480 28.376 585 295 19 23 510 24 581 7.23e-46 169
MsG0680035743.01.T01 AT4G16480 28.376 585 295 19 23 510 24 581 7.23e-46 169
MsG0680035743.01.T01 AT4G16480 28.376 585 295 19 23 510 24 581 7.23e-46 169
MsG0680035743.01.T01 AT5G17010 28.221 489 313 9 12 485 33 498 1.42e-45 167
MsG0680035743.01.T01 AT5G17010 28.221 489 313 9 12 485 33 498 1.42e-45 167
MsG0680035743.01.T01 AT5G17010 28.221 489 313 9 12 485 33 498 1.42e-45 167
MsG0680035743.01.T01 AT5G16150 28.330 473 305 9 19 487 98 540 7.19e-45 166
MsG0680035743.01.T01 AT5G16150 28.330 473 305 9 19 487 98 540 7.19e-45 166
MsG0680035743.01.T01 AT5G16150 28.330 473 305 9 19 487 98 540 7.19e-45 166
MsG0680035743.01.T01 AT2G20780 27.912 498 315 16 13 497 42 508 1.06e-43 162
MsG0680035743.01.T01 AT2G43330 29.079 478 304 10 25 492 30 482 2.83e-43 160
MsG0680035743.01.T01 AT2G20780 30.238 420 269 14 91 497 42 450 1.34e-41 155
MsG0680035743.01.T01 AT1G08930 29.138 429 250 13 86 492 98 494 1.69e-41 155
MsG0680035743.01.T01 AT1G08930 29.138 429 250 13 86 492 98 494 1.69e-41 155
MsG0680035743.01.T01 AT3G03090 28.138 494 307 10 12 485 33 498 4.77e-41 154
MsG0680035743.01.T01 AT1G05030 30.340 412 269 11 82 487 64 463 1.80e-40 152
MsG0680035743.01.T01 AT1G05030 29.004 462 291 13 32 487 85 515 1.95e-40 153
MsG0680035743.01.T01 AT1G75220 28.117 409 281 6 86 490 88 487 3.62e-40 152
MsG0680035743.01.T01 AT2G48020 28.256 407 268 7 86 485 68 457 1.36e-39 149
MsG0680035743.01.T01 AT2G48020 28.256 407 268 7 86 485 68 457 1.36e-39 149
MsG0680035743.01.T01 AT1G19450 28.606 409 279 6 86 490 89 488 1.57e-39 150
MsG0680035743.01.T01 AT1G08900 28.642 405 269 8 86 485 23 412 1.49e-38 146
MsG0680035743.01.T01 AT3G05400 28.979 421 259 13 86 491 66 461 1.53e-38 147
MsG0680035743.01.T01 AT1G08900 28.642 405 269 8 86 485 57 446 3.04e-38 145
MsG0680035743.01.T01 AT1G08900 28.642 405 269 8 86 485 65 454 3.09e-38 146
MsG0680035743.01.T01 AT1G08900 28.642 405 269 8 86 485 65 454 3.09e-38 146
MsG0680035743.01.T01 AT1G67300 27.559 381 258 7 111 485 118 486 1.52e-37 144
MsG0680035743.01.T01 AT5G27360 28.364 483 284 13 19 485 28 464 3.07e-37 143
MsG0680035743.01.T01 AT1G67300 27.647 340 232 6 111 448 118 445 4.71e-37 142
MsG0680035743.01.T01 AT1G67300 27.647 340 232 6 111 448 118 445 4.71e-37 142
MsG0680035743.01.T01 AT1G79820 26.862 376 264 5 111 485 121 486 6.70e-37 142
MsG0680035743.01.T01 AT1G79820 26.862 376 264 5 111 485 121 486 6.70e-37 142
MsG0680035743.01.T01 AT5G27360 28.364 483 284 13 19 485 76 512 8.03e-37 143
MsG0680035743.01.T01 AT1G30220 29.775 356 223 9 7 355 10 345 8.09e-37 144
MsG0680035743.01.T01 AT5G27350 27.551 490 279 12 19 485 24 460 8.16e-37 142
MsG0680035743.01.T01 AT3G05400 30.750 400 227 15 117 491 67 441 1.04e-36 141
MsG0680035743.01.T01 AT3G05155 26.650 409 270 9 86 485 67 454 1.24e-36 141
MsG0680035743.01.T01 AT1G67300 27.559 381 257 7 111 485 118 485 1.66e-36 141
MsG0680035743.01.T01 AT1G67300 27.559 381 257 7 111 485 118 485 1.66e-36 141
MsG0680035743.01.T01 AT1G54730 27.475 404 275 8 86 485 72 461 2.00e-36 141
MsG0680035743.01.T01 AT4G04760 30.184 434 270 10 68 492 2 411 2.05e-36 140
MsG0680035743.01.T01 AT4G04750 29.016 386 258 8 111 492 145 518 3.68e-36 141
MsG0680035743.01.T01 AT4G04750 29.016 386 258 8 111 492 101 474 4.29e-36 140
MsG0680035743.01.T01 AT4G04750 29.016 386 258 8 111 492 101 474 4.29e-36 140
MsG0680035743.01.T01 AT3G05150 28.256 407 269 8 86 485 75 465 6.38e-36 140
MsG0680035743.01.T01 AT3G05150 28.256 407 269 8 86 485 75 465 7.14e-36 139
MsG0680035743.01.T01 AT3G05150 28.256 407 269 8 86 485 75 465 7.14e-36 139
MsG0680035743.01.T01 AT4G04760 30.184 434 270 10 68 492 61 470 7.32e-36 139
MsG0680035743.01.T01 AT1G08890 29.238 407 264 10 86 485 67 456 1.45e-35 138
MsG0680035743.01.T01 AT1G67300 27.586 319 219 5 111 427 118 426 2.13e-35 137
MsG0680035743.01.T01 AT1G67300 27.586 319 219 5 111 427 118 426 2.13e-35 137
MsG0680035743.01.T01 AT5G18840 29.657 408 262 10 86 485 84 474 3.64e-35 137
MsG0680035743.01.T01 AT1G79820 26.769 325 228 4 111 435 121 435 3.95e-35 137
MsG0680035743.01.T01 AT5G27360 29.363 361 233 8 131 485 16 360 4.23e-35 135
MsG0680035743.01.T01 AT5G27360 29.363 361 233 8 131 485 16 360 4.23e-35 135
MsG0680035743.01.T01 AT2G35740 27.763 371 227 9 25 381 25 368 5.28e-35 138
MsG0680035743.01.T01 AT3G05160 28.780 410 258 12 88 485 14 401 4.22e-34 133
MsG0680035743.01.T01 AT3G05160 28.780 410 258 12 88 485 14 401 4.22e-34 133
MsG0680035743.01.T01 AT3G05165 29.156 391 235 12 111 485 95 459 6.41e-34 134
MsG0680035743.01.T01 AT3G05165 29.156 391 235 12 111 485 95 459 6.41e-34 134
MsG0680035743.01.T01 AT3G05165 29.156 391 235 12 111 485 95 459 6.41e-34 134
MsG0680035743.01.T01 AT3G05160 28.780 410 258 12 88 485 63 450 8.46e-34 133
MsG0680035743.01.T01 AT1G08900 29.444 360 234 8 86 440 65 409 1.46e-32 129
MsG0680035743.01.T01 AT1G08920 26.214 412 270 10 86 485 72 461 2.05e-32 129
MsG0680035743.01.T01 AT4G04760 29.561 433 269 11 68 491 61 466 3.56e-32 129
MsG0680035743.01.T01 AT1G54730 26.667 360 246 8 86 441 72 417 1.82e-31 126
MsG0680035743.01.T01 AT1G08920 25.776 419 270 10 86 485 72 468 2.28e-31 127
MsG0680035743.01.T01 AT1G54730 25.743 404 261 8 86 485 72 440 1.41e-29 121
MsG0680035743.01.T01 AT3G20460 27.670 412 264 11 86 485 93 482 1.66e-28 119
MsG0680035743.01.T01 AT3G05165 29.552 335 194 12 111 429 95 403 2.80e-28 118
MsG0680035743.01.T01 AT3G05165 29.552 335 194 12 111 429 95 403 4.75e-28 117
MsG0680035743.01.T01 AT3G05165 29.552 335 194 12 111 429 95 403 4.75e-28 117
MsG0680035743.01.T01 AT1G08920 25.815 368 239 10 86 441 72 417 1.73e-27 115
MsG0680035743.01.T01 AT2G48020 29.066 289 184 6 86 367 68 342 1.29e-26 111
MsG0680035743.01.T01 AT3G51490 30.126 239 148 5 26 263 4 224 4.31e-25 109
MsG0680035743.01.T01 AT3G51490 30.126 239 148 5 26 263 4 224 4.48e-25 109
MsG0680035743.01.T01 AT1G54730 25.970 335 230 8 86 416 72 392 4.58e-25 107
MsG0680035743.01.T01 AT1G54730 25.970 335 230 8 86 416 72 392 4.58e-25 107
MsG0680035743.01.T01 AT3G51490 35.057 174 111 2 91 263 2 174 4.86e-25 109
MsG0680035743.01.T01 AT1G54730 24.722 360 232 8 86 441 72 396 1.02e-24 106
MsG0680035743.01.T01 AT3G05155 26.619 278 177 7 86 355 67 325 1.87e-24 104
MsG0680035743.01.T01 AT2G48020 29.286 280 170 6 86 355 68 329 1.91e-24 105
MsG0680035743.01.T01 AT1G79820 24.468 376 225 5 111 485 121 438 3.63e-24 105
MsG0680035743.01.T01 AT1G54730 26.374 273 187 5 86 355 72 333 9.81e-24 102
MsG0680035743.01.T01 AT5G27360 26.905 420 245 13 19 422 28 401 1.07e-23 103
MsG0680035743.01.T01 AT5G17010 24.540 489 271 13 12 485 30 435 4.14e-22 99.4
MsG0680035743.01.T01 AT1G79820 24.862 362 209 6 127 485 75 376 2.07e-21 96.7
MsG0680035743.01.T01 AT1G54730 25.896 251 175 4 86 333 72 314 3.59e-21 95.1
MsG0680035743.01.T01 AT1G54730 25.896 251 175 4 86 333 72 314 3.59e-21 95.1
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 8.23e-21 96.7
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 9.55e-21 96.3
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 9.55e-21 96.3
MsG0680035743.01.T01 AT4G35300 34.483 174 112 2 91 263 52 224 9.55e-21 96.3
MsG0680035743.01.T01 AT1G54730 25.498 251 176 4 86 333 72 314 2.21e-20 93.6
MsG0680035743.01.T01 AT1G20840 30.208 192 126 2 80 263 31 222 5.13e-19 90.9
MsG0680035743.01.T01 AT1G20840 30.208 192 126 2 80 263 31 222 5.13e-19 90.9

Find 103 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAACTTGCTTGGTTTC+TGG 0.107517 6:-111482382 None:intergenic
ACAAGACTGTTTGGTGTTTC+TGG 0.173809 6:-111481019 None:intergenic
GCAAGAAGATTCCGTATTTA+AGG 0.184615 6:-111482309 None:intergenic
GGATATGATCTTGGTGTTTC+AGG 0.205684 6:+111479291 MsG0680035743.01.T01:CDS
GCACTTGGTGGGGCTCTATT+TGG 0.217992 6:+111479270 MsG0680035743.01.T01:CDS
CTTGGAGTTGGTATTGGATT+TGG 0.262672 6:+111480044 MsG0680035743.01.T01:CDS
ATCATTGGACGTATTCTTCT+TGG 0.273716 6:+111480026 MsG0680035743.01.T01:CDS
TTCCTAAACATGTTGTTAAC+TGG 0.274361 6:-111480877 None:intergenic
ATTGCTAACCTTGTGAATTA+TGG 0.277757 6:+111480905 MsG0680035743.01.T01:CDS
GATCAGCATTGCTATATTCT+TGG 0.280820 6:-111480006 None:intergenic
TGCTTCCTCTCATACACATT+TGG 0.294387 6:-111479792 None:intergenic
CCAATTGTTTGGAAAATAAC+AGG 0.316014 6:-111481274 None:intergenic
GCTGCTCTTGTGTCCACATT+TGG 0.331542 6:+111479891 MsG0680035743.01.T01:CDS
ATCTTCTGTTTGAGAATCAT+TGG 0.334480 6:+111482416 MsG0680035743.01.T01:CDS
TGTTTGAGAATCATTGGTTT+TGG 0.335335 6:+111482422 MsG0680035743.01.T01:CDS
TACACTCATCTCAATGGCTT+TGG 0.339050 6:+111481357 MsG0680035743.01.T01:CDS
CCAGCAACATTCATGTTCAT+TGG 0.340067 6:+111480983 MsG0680035743.01.T01:CDS
GCTCTATTTGGATATGATCT+TGG 0.350131 6:+111479282 MsG0680035743.01.T01:CDS
CTTTATGAGCATAAGATAAC+TGG 0.354982 6:+111479219 MsG0680035743.01.T01:CDS
GCAGATGACCTTATCTCTAA+TGG 0.355097 6:-111482211 None:intergenic
CCAGCATTTCAACAACTAAC+TGG 0.358134 6:+111481226 MsG0680035743.01.T01:CDS
GAAGATCTTGGGGTCCCTTA+GGG 0.359127 6:+111482164 MsG0680035743.01.T01:CDS
GATTGCCACAGCTATAGTTT+TGG 0.362236 6:+111482054 MsG0680035743.01.T01:intron
ATGGCTTTGGTTGACAAGTT+TGG 0.363390 6:+111481370 MsG0680035743.01.T01:CDS
GGAAGATCTTGGGGTCCCTT+AGG 0.366556 6:+111482163 MsG0680035743.01.T01:CDS
TTCCAGTTAACAACATGTTT+AGG 0.367924 6:+111480875 MsG0680035743.01.T01:CDS
CCTTGTTCCACAAGACTGTT+TGG 0.369419 6:-111481028 None:intergenic
CAGAGCCAAATCCAATTGTT+TGG 0.371830 6:-111481285 None:intergenic
TTGGGGTCCCTTAGGGTGGT+TGG 0.373657 6:+111482171 MsG0680035743.01.T01:CDS
ATTCTTCTTGGAGTTGGTAT+TGG 0.373658 6:+111480038 MsG0680035743.01.T01:CDS
TCCTCTATATCTTTCAGAAA+TGG 0.385342 6:+111480817 MsG0680035743.01.T01:CDS
CTCAAAAGGAGATTCTGAAA+TGG 0.385487 6:-111481163 None:intergenic
CTCTTCAATTGGAACTTGCT+TGG 0.389604 6:-111482389 None:intergenic
CTACTCTTCCTTCGTCGATT+CGG 0.391327 6:-111481051 None:intergenic
GAGGTCTATTCTTTCTCAAA+AGG 0.398721 6:-111481177 None:intergenic
CAAACAATTGGATTTGGCTC+TGG 0.401668 6:+111481286 MsG0680035743.01.T01:CDS
GCTTCCTCTCATACACATTT+GGG 0.404907 6:-111479791 None:intergenic
GCATTATTGGAGCACTTGGT+GGG 0.409674 6:+111479259 MsG0680035743.01.T01:CDS
TGCATTATTGGAGCACTTGG+TGG 0.411658 6:+111479258 MsG0680035743.01.T01:CDS
AGAAGATAAATCTCTTCAAT+TGG 0.412850 6:-111482400 None:intergenic
GATGGAAAACAACTGTCATT+TGG 0.414524 6:+111482091 MsG0680035743.01.T01:CDS
CCAATGAACATGAATGTTGC+TGG 0.414552 6:-111480983 None:intergenic
AGTAGACAAAGCAGCTCATA+AGG 0.415528 6:-111482351 None:intergenic
TTTGGCATATGGAAGATCTT+GGG 0.420424 6:+111482153 MsG0680035743.01.T01:CDS
CTTGCTTGGTTTCTGGCAAT+AGG 0.429274 6:-111482375 None:intergenic
TACTGAGAAAATTCACCCTT+GGG 0.434323 6:+111480928 MsG0680035743.01.T01:CDS
AATATAGCAATGCTGATCAT+TGG 0.436846 6:+111480011 MsG0680035743.01.T01:CDS
TGGGGATGGAGGCTATCCTT+AGG 0.436898 6:+111480947 MsG0680035743.01.T01:CDS
CCAGTTAGTTGTTGAAATGC+TGG 0.437664 6:-111481226 None:intergenic
AACTCTTTCCATTAGAGATA+AGG 0.443050 6:+111482203 MsG0680035743.01.T01:CDS
CGACGAAGGAAGAGTAGTAC+TGG 0.450629 6:+111481057 MsG0680035743.01.T01:CDS
GGACGTATTCTTCTTGGAGT+TGG 0.452238 6:+111480032 MsG0680035743.01.T01:CDS
TCACTTTGCCACCTTAAATA+CGG 0.453634 6:+111482298 MsG0680035743.01.T01:CDS
AGGAGAGCTAGTATCTTAGT+TGG 0.456742 6:+111479942 MsG0680035743.01.T01:CDS
TCTTGCATTATTGGAGCACT+TGG 0.467413 6:+111479255 MsG0680035743.01.T01:CDS
GTAGTACTGGAAAAGATTAG+AGG 0.468764 6:+111481070 MsG0680035743.01.T01:CDS
GCCATTTCTGAAAGATATAG+AGG 0.470895 6:-111480818 None:intergenic
AATAGACCTCAATTCATCAT+TGG 0.473706 6:+111481190 MsG0680035743.01.T01:CDS
TCTTGCTACACTCATCTCAA+TGG 0.483416 6:+111481351 MsG0680035743.01.T01:CDS
AGAAAATTCACCCTTGGGGA+TGG 0.501248 6:+111480933 MsG0680035743.01.T01:CDS
ATAAAGATGAGCCCTCTTGA+GGG 0.508927 6:-111479202 None:intergenic
GATCTTGGGGTCCCTTAGGG+TGG 0.511703 6:+111482167 MsG0680035743.01.T01:CDS
TTGGCATATGGAAGATCTTG+GGG 0.514199 6:+111482154 MsG0680035743.01.T01:CDS
CATTATTGGAGCACTTGGTG+GGG 0.519682 6:+111479260 MsG0680035743.01.T01:CDS
AGAATTCGATGATCTTATTG+AGG 0.537749 6:+111481111 MsG0680035743.01.T01:CDS
TTTAGCTTATGCTTGTGTCT+CGG 0.537950 6:-111482476 None:intergenic
CATAAAGATGAGCCCTCTTG+AGG 0.543236 6:-111479203 None:intergenic
GCAACATTCATGTTCATTGG+AGG 0.543345 6:+111480986 MsG0680035743.01.T01:CDS
CTTTGGTTGACAAGTTTGGT+AGG 0.544568 6:+111481374 MsG0680035743.01.T01:CDS
GTACTGAGAAAATTCACCCT+TGG 0.549057 6:+111480927 MsG0680035743.01.T01:CDS
TTCAATGAGGAAATCATCCA+TGG 0.549795 6:-111479763 None:intergenic
TATTGTCAAGGACGAAAACA+AGG 0.557245 6:+111482450 MsG0680035743.01.T01:CDS
ATGTTGTTAACTGGAAGAGT+TGG 0.557976 6:-111480868 None:intergenic
ACTAGGAACCAACCACCCTA+AGG 0.558058 6:-111482179 None:intergenic
AAAAGTTAGGGGAAAATGGC+AGG 0.558336 6:+111479156 None:intergenic
CACAGGTGGTGTTACTTCCA+TGG 0.565297 6:+111479746 MsG0680035743.01.T01:intron
TGGAACTGTTGCTAAACCTA+AGG 0.567484 6:-111480963 None:intergenic
TCTAATGGAAAGAGTTCACT+AGG 0.569504 6:-111482196 None:intergenic
TAGACTTGAAGCACCAAATG+TGG 0.573480 6:-111479904 None:intergenic
CCAAACAGTCTTGTGGAACA+AGG 0.574342 6:+111481028 MsG0680035743.01.T01:CDS
AAATTCACCCTTGGGGATGG+AGG 0.582472 6:+111480936 MsG0680035743.01.T01:CDS
AAGGATAGCCTCCATCCCCA+AGG 0.585207 6:-111480944 None:intergenic
ATTGCACCAATGATGAATTG+AGG 0.586290 6:-111481196 None:intergenic
TCTTCCCAAATGTGTATGAG+AGG 0.597203 6:+111479787 MsG0680035743.01.T01:CDS
AGAAACACCAAACAGTCTTG+TGG 0.605301 6:+111481021 MsG0680035743.01.T01:CDS
CTAGGAACCAACCACCCTAA+GGG 0.605522 6:-111482178 None:intergenic
AAGGAAGAATTGTGCGACGA+TGG 0.620883 6:-111482272 None:intergenic
AGAAGATTCCGTATTTAAGG+TGG 0.621906 6:-111482306 None:intergenic
GCAGGTGGAGCATTTGCAGA+TGG 0.625709 6:+111479174 MsG0680035743.01.T01:CDS
TCTCAGTACCATAATTCACA+AGG 0.628815 6:-111480913 None:intergenic
CAGATGGTAGCACCCTCAAG+AGG 0.631499 6:+111479190 MsG0680035743.01.T01:CDS
AGGATAGCCTCCATCCCCAA+GGG 0.641594 6:-111480943 None:intergenic
TACTGAAATGATAATATGCA+TGG 0.645085 6:+111481420 MsG0680035743.01.T01:CDS
GAACAAGGCCGAATCGACGA+AGG 0.647528 6:+111481043 MsG0680035743.01.T01:CDS
AGATGGTAGCACCCTCAAGA+GGG 0.662568 6:+111479191 MsG0680035743.01.T01:CDS
AGTAGCCAAAACTATAGCTG+TGG 0.663529 6:-111482059 None:intergenic
ATTGTCAAGGACGAAAACAA+GGG 0.664475 6:+111482451 MsG0680035743.01.T01:CDS
GTCATCTGCACAAAGTGTTG+TGG 0.672138 6:+111482225 MsG0680035743.01.T01:CDS
TAAGGTGGCAAAGTGACACA+AGG 0.685068 6:-111482291 None:intergenic
AGTTAGGGGAAAATGGCAGG+TGG 0.686132 6:+111479159 None:intergenic
TTGTCAAGGACGAAAACAAG+GGG 0.689476 6:+111482452 MsG0680035743.01.T01:CDS
CATTTGGGAAGAATTCAATG+AGG 0.699343 6:-111479776 None:intergenic
ACTGAGAAAATTCACCCTTG+GGG 0.704912 6:+111480929 MsG0680035743.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATTAAAACGTAAATT+TGG + Chr6:111480371-111480390 MsG0680035743.01.T01:intron 10.0%
!! GATCTAAAAAAACAATTAAA+AGG + Chr6:111481509-111481528 MsG0680035743.01.T01:intron 15.0%
!!! CATGATTTTTCTAATTATTA+TGG + Chr6:111480784-111480803 MsG0680035743.01.T01:intron 15.0%
!!! TAGAAAAAATTATCTAAAGT+AGG - Chr6:111481665-111481684 None:intergenic 15.0%
!!! TATAACTATGTTAAAGTATT+TGG - Chr6:111480703-111480722 None:intergenic 15.0%
!! AACGATTAATCATAAACTAA+CGG + Chr6:111479701-111479720 MsG0680035743.01.T01:intron 20.0%
!! ATTAGAGATACATGAAAAAT+TGG - Chr6:111480126-111480145 None:intergenic 20.0%
!! TAAAATACAATCATCAATGA+AGG - Chr6:111479435-111479454 None:intergenic 20.0%
!! TCACATAAATGCTTATTTAA+AGG - Chr6:111481903-111481922 None:intergenic 20.0%
!! TGATTTCCTATTCTTATAAA+TGG - Chr6:111479381-111479400 None:intergenic 20.0%
!!! AATTTGAGAATTTTTTTTGG+TGG + Chr6:111482017-111482036 MsG0680035743.01.T01:intron 20.0%
!!! AGTGATTTTCTTATTTGTTT+TGG + Chr6:111482135-111482154 MsG0680035743.01.T01:CDS 20.0%
!!! ATTAACCATTCAATTTTGAA+AGG + Chr6:111479555-111479574 MsG0680035743.01.T01:intron 20.0%
!!! ATTTTGCCATTTATAAGAAT+AGG + Chr6:111479372-111479391 MsG0680035743.01.T01:intron 20.0%
!!! ATTTTTATTTCACATAAGGT+GGG - Chr6:111480422-111480441 None:intergenic 20.0%
!!! CAAAATTATGTTTCTACATT+AGG + Chr6:111481591-111481610 MsG0680035743.01.T01:intron 20.0%
!!! CTAATGTAGAAACATAATTT+TGG - Chr6:111481593-111481612 None:intergenic 20.0%
!!! GCTAATTTGAGAATTTTTTT+TGG + Chr6:111482014-111482033 MsG0680035743.01.T01:intron 20.0%
!!! TGAACAAAACTTGATTTTTA+AGG - Chr6:111480680-111480699 None:intergenic 20.0%
!!! TGAGATTTTTATTTCACATA+AGG - Chr6:111480426-111480445 None:intergenic 20.0%
! AATTTGTCAACACTTTGTAT+TGG + Chr6:111480244-111480263 MsG0680035743.01.T01:intron 25.0%
! AGAAGATAAATCTCTTCAAT+TGG - Chr6:111482403-111482422 None:intergenic 25.0%
! CAAATTAGCAACAAAAAAAG+TGG - Chr6:111482003-111482022 None:intergenic 25.0%
! CCTCATAATACCAATTTATA+AGG - Chr6:111480336-111480355 None:intergenic 25.0%
! CCTTATAAATTGGTATTATG+AGG + Chr6:111480333-111480352 MsG0680035743.01.T01:intron 25.0%
! GGCAAAATCAAAATTTGTAT+TGG - Chr6:111479360-111479379 None:intergenic 25.0%
! TAATACCAATTTATAAGGTG+AGG - Chr6:111480331-111480350 None:intergenic 25.0%
! TACTGAAATGATAATATGCA+TGG + Chr6:111481420-111481439 MsG0680035743.01.T01:CDS 25.0%
! TCAAGTCTAACAAAAAACAA+AGG + Chr6:111479918-111479937 MsG0680035743.01.T01:CDS 25.0%
! TCATATTGAATAGACAGATA+AGG + Chr6:111480280-111480299 MsG0680035743.01.T01:intron 25.0%
! TCTCATATTGAATAGAGATA+AGG + Chr6:111480441-111480460 MsG0680035743.01.T01:intron 25.0%
! TTCTAAATAAACTAGTTGCT+TGG + Chr6:111481680-111481699 MsG0680035743.01.T01:intron 25.0%
! TTTATTTCCATAAGCTCAAT+AGG + Chr6:111481801-111481820 MsG0680035743.01.T01:intron 25.0%
!! ATCTAAAGTAGGTTAAAACA+GGG - Chr6:111481654-111481673 None:intergenic 25.0%
!! ATTTTCCAAACAATTGGATT+TGG + Chr6:111481280-111481299 MsG0680035743.01.T01:CDS 25.0%
!! CTCATATTTTCTTGCATTAT+TGG + Chr6:111479246-111479265 MsG0680035743.01.T01:CDS 25.0%
!! TATCTAAAGTAGGTTAAAAC+AGG - Chr6:111481655-111481674 None:intergenic 25.0%
!! TGATAATTTAGAGTTTAGTC+AGG + Chr6:111479620-111479639 MsG0680035743.01.T01:intron 25.0%
!! TTTTCTAATTATTATGGTGC+AGG + Chr6:111480790-111480809 MsG0680035743.01.T01:intron 25.0%
!!! ACAAAACTTGATTTTTAAGG+TGG - Chr6:111480677-111480696 None:intergenic 25.0%
!!! CAAAACTTGATTTTTAAGGT+GGG - Chr6:111480676-111480695 None:intergenic 25.0%
!!! GATTTTTATTTCACATAAGG+TGG - Chr6:111480423-111480442 None:intergenic 25.0%
!!! TGACAAAAGATTGTTTTAGT+CGG + Chr6:111479656-111479675 MsG0680035743.01.T01:intron 25.0%
!!! TTCTTATTTGTTTTGGCATA+TGG + Chr6:111482142-111482161 MsG0680035743.01.T01:CDS 25.0%
!!! TTTTTATTTCACATAAGGTG+GGG - Chr6:111480421-111480440 None:intergenic 25.0%
AACTCTTTCCATTAGAGATA+AGG + Chr6:111482203-111482222 MsG0680035743.01.T01:CDS 30.0%
AATAGACCTCAATTCATCAT+TGG + Chr6:111481190-111481209 MsG0680035743.01.T01:CDS 30.0%
AATAGAGATAAGGTCTTACA+TGG + Chr6:111480451-111480470 MsG0680035743.01.T01:intron 30.0%
AATATAGCAATGCTGATCAT+TGG + Chr6:111480011-111480030 MsG0680035743.01.T01:CDS 30.0%
AATGACCTCACCTTATAAAT+TGG + Chr6:111480323-111480342 MsG0680035743.01.T01:intron 30.0%
AGAATTCGATGATCTTATTG+AGG + Chr6:111481111-111481130 MsG0680035743.01.T01:CDS 30.0%
ATAGAGATAAGGTCTTACAT+GGG + Chr6:111480452-111480471 MsG0680035743.01.T01:intron 30.0%
ATCTTCTGTTTGAGAATCAT+TGG + Chr6:111482416-111482435 MsG0680035743.01.T01:CDS 30.0%
ATTGCTAACCTTGTGAATTA+TGG + Chr6:111480905-111480924 MsG0680035743.01.T01:CDS 30.0%
CCAATTGTTTGGAAAATAAC+AGG - Chr6:111481277-111481296 None:intergenic 30.0%
CTTTATGAGCATAAGATAAC+TGG + Chr6:111479219-111479238 MsG0680035743.01.T01:CDS 30.0%
GCTAACTCATGTTTACATAA+AGG - Chr6:111480499-111480518 None:intergenic 30.0%
GTCTAACAAAAAACAAAGGA+AGG + Chr6:111479922-111479941 MsG0680035743.01.T01:CDS 30.0%
TCCTCTATATCTTTCAGAAA+TGG + Chr6:111480817-111480836 MsG0680035743.01.T01:CDS 30.0%
TGTCCTCAAGATGAAAAATA+TGG + Chr6:111480740-111480759 MsG0680035743.01.T01:intron 30.0%
TTCCAGTTAACAACATGTTT+AGG + Chr6:111480875-111480894 MsG0680035743.01.T01:CDS 30.0%
TTCCTAAACATGTTGTTAAC+TGG - Chr6:111480880-111480899 None:intergenic 30.0%
! AAGTATTTCTTGATGATCAC+AGG + Chr6:111479729-111479748 MsG0680035743.01.T01:intron 30.0%
! CCAATAGTGTTGAACATAAA+GGG + Chr6:111480594-111480613 MsG0680035743.01.T01:intron 30.0%
! TCCAATAGTGTTGAACATAA+AGG + Chr6:111480593-111480612 MsG0680035743.01.T01:intron 30.0%
! TGACCATATTTTTCATCTTG+AGG - Chr6:111480746-111480765 None:intergenic 30.0%
! TTGAACATAAAGGGTGTATT+AGG + Chr6:111480603-111480622 MsG0680035743.01.T01:intron 30.0%
!!! ATAGTTTTGGCTACTTGTTT+TGG + Chr6:111482067-111482086 MsG0680035743.01.T01:CDS 30.0%
!!! CCTGTTATTTTCCAAACAAT+TGG + Chr6:111481274-111481293 MsG0680035743.01.T01:CDS 30.0%
!!! GTTTTGGAAGAATATTGTCA+AGG + Chr6:111482438-111482457 MsG0680035743.01.T01:CDS 30.0%
!!! TGTTTGAGAATCATTGGTTT+TGG + Chr6:111482422-111482441 MsG0680035743.01.T01:CDS 30.0%
AAGCTATCCTATTGAGCTTA+TGG - Chr6:111481811-111481830 None:intergenic 35.0%
AGAAGATTCCGTATTTAAGG+TGG - Chr6:111482309-111482328 None:intergenic 35.0%
ATAAATAGTGTGTGACGCAA+TGG - Chr6:111480557-111480576 None:intergenic 35.0%
ATCATTGGACGTATTCTTCT+TGG + Chr6:111480026-111480045 MsG0680035743.01.T01:CDS 35.0%
ATGTTGTTAACTGGAAGAGT+TGG - Chr6:111480871-111480890 None:intergenic 35.0%
ATTGCACCAATGATGAATTG+AGG - Chr6:111481199-111481218 None:intergenic 35.0%
ATTGTCAAGGACGAAAACAA+GGG + Chr6:111482451-111482470 MsG0680035743.01.T01:CDS 35.0%
CATTTGGGAAGAATTCAATG+AGG - Chr6:111479779-111479798 None:intergenic 35.0%
CCCTTTATGTTCAACACTAT+TGG - Chr6:111480597-111480616 None:intergenic 35.0%
GAGGTCTATTCTTTCTCAAA+AGG - Chr6:111481180-111481199 None:intergenic 35.0%
GATCAGCATTGCTATATTCT+TGG - Chr6:111480009-111480028 None:intergenic 35.0%
GATGGAAAACAACTGTCATT+TGG + Chr6:111482091-111482110 MsG0680035743.01.T01:CDS 35.0%
GCAAGAAGATTCCGTATTTA+AGG - Chr6:111482312-111482331 None:intergenic 35.0%
GCGTTCCTTTCAAAATTGAA+TGG - Chr6:111479563-111479582 None:intergenic 35.0%
GCTCTATTTGGATATGATCT+TGG + Chr6:111479282-111479301 MsG0680035743.01.T01:CDS 35.0%
TACTACCTAAAATTTCCCCA+AGG - Chr6:111479507-111479526 None:intergenic 35.0%
TACTGAGAAAATTCACCCTT+GGG + Chr6:111480928-111480947 MsG0680035743.01.T01:CDS 35.0%
TATTGTCAAGGACGAAAACA+AGG + Chr6:111482450-111482469 MsG0680035743.01.T01:CDS 35.0%
TCACTTTGCCACCTTAAATA+CGG + Chr6:111482298-111482317 MsG0680035743.01.T01:CDS 35.0%
TCTAATGGAAAGAGTTCACT+AGG - Chr6:111482199-111482218 None:intergenic 35.0%
TCTCAGTACCATAATTCACA+AGG - Chr6:111480916-111480935 None:intergenic 35.0%
TTCAATGAGGAAATCATCCA+TGG - Chr6:111479766-111479785 None:intergenic 35.0%
TTTGGCATATGGAAGATCTT+GGG + Chr6:111482153-111482172 MsG0680035743.01.T01:CDS 35.0%
! AAATGCTAACTTGTGCCTTA+AGG - Chr6:111481631-111481650 None:intergenic 35.0%
! CTCAAAAGGAGATTCTGAAA+TGG - Chr6:111481166-111481185 None:intergenic 35.0%
! GCCATTTCTGAAAGATATAG+AGG - Chr6:111480821-111480840 None:intergenic 35.0%
! GGTCTTACATGGGTTTTTAA+AGG + Chr6:111480462-111480481 MsG0680035743.01.T01:intron 35.0%
! GTAGTACTGGAAAAGATTAG+AGG + Chr6:111481070-111481089 MsG0680035743.01.T01:CDS 35.0%
! TATTTCTTGATGATCACAGG+TGG + Chr6:111479732-111479751 MsG0680035743.01.T01:intron 35.0%
! TTTTGGCATATGGAAGATCT+TGG + Chr6:111482152-111482171 MsG0680035743.01.T01:CDS 35.0%
!! ATTCTTCTTGGAGTTGGTAT+TGG + Chr6:111480038-111480057 MsG0680035743.01.T01:CDS 35.0%
ACTGAGAAAATTCACCCTTG+GGG + Chr6:111480929-111480948 MsG0680035743.01.T01:CDS 40.0%
AGAAACACCAAACAGTCTTG+TGG + Chr6:111481021-111481040 MsG0680035743.01.T01:CDS 40.0%
AGGAGAGCTAGTATCTTAGT+TGG + Chr6:111479942-111479961 MsG0680035743.01.T01:CDS 40.0%
AGTAGACAAAGCAGCTCATA+AGG - Chr6:111482354-111482373 None:intergenic 40.0%
AGTAGCCAAAACTATAGCTG+TGG - Chr6:111482062-111482081 None:intergenic 40.0%
ATAAAGATGAGCCCTCTTGA+GGG - Chr6:111479205-111479224 None:intergenic 40.0%
ATGGCACCAGCAAAAATTAG+AGG + Chr6:111480836-111480855 MsG0680035743.01.T01:CDS 40.0%
CAGAGCCAAATCCAATTGTT+TGG - Chr6:111481288-111481307 None:intergenic 40.0%
CCAATGAACATGAATGTTGC+TGG - Chr6:111480986-111481005 None:intergenic 40.0%
CCAGCAACATTCATGTTCAT+TGG + Chr6:111480983-111481002 MsG0680035743.01.T01:CDS 40.0%
CCAGCATTTCAACAACTAAC+TGG + Chr6:111481226-111481245 MsG0680035743.01.T01:CDS 40.0%
CCAGTTAGTTGTTGAAATGC+TGG - Chr6:111481229-111481248 None:intergenic 40.0%
CTTTGGTTGACAAGTTTGGT+AGG + Chr6:111481374-111481393 MsG0680035743.01.T01:CDS 40.0%
GCAACATTCATGTTCATTGG+AGG + Chr6:111480986-111481005 MsG0680035743.01.T01:CDS 40.0%
GCAGATGACCTTATCTCTAA+TGG - Chr6:111482214-111482233 None:intergenic 40.0%
GCTTCCTCTCATACACATTT+GGG - Chr6:111479794-111479813 None:intergenic 40.0%
GTACTGAGAAAATTCACCCT+TGG + Chr6:111480927-111480946 MsG0680035743.01.T01:CDS 40.0%
TACACTCATCTCAATGGCTT+TGG + Chr6:111481357-111481376 MsG0680035743.01.T01:CDS 40.0%
TCTTCCCAAATGTGTATGAG+AGG + Chr6:111479787-111479806 MsG0680035743.01.T01:CDS 40.0%
TCTTGCTACACTCATCTCAA+TGG + Chr6:111481351-111481370 MsG0680035743.01.T01:CDS 40.0%
TGCTTCCTCTCATACACATT+TGG - Chr6:111479795-111479814 None:intergenic 40.0%
TGGAACTGTTGCTAAACCTA+AGG - Chr6:111480966-111480985 None:intergenic 40.0%
TTATTTCACATAAGGTGGGG+TGG - Chr6:111480418-111480437 None:intergenic 40.0%
TTGGCATATGGAAGATCTTG+GGG + Chr6:111482154-111482173 MsG0680035743.01.T01:CDS 40.0%
TTGTCAAGGACGAAAACAAG+GGG + Chr6:111482452-111482471 MsG0680035743.01.T01:CDS 40.0%
! ACTGCTCCTCTAATTTTTGC+TGG - Chr6:111480845-111480864 None:intergenic 40.0%
! ATTGGAACTTGCTTGGTTTC+TGG - Chr6:111482385-111482404 None:intergenic 40.0%
! CAAACAATTGGATTTGGCTC+TGG + Chr6:111481286-111481305 MsG0680035743.01.T01:CDS 40.0%
! CTCTTCAATTGGAACTTGCT+TGG - Chr6:111482392-111482411 None:intergenic 40.0%
! GAACTCCTTGGGGAAATTTT+AGG + Chr6:111479499-111479518 MsG0680035743.01.T01:intron 40.0%
! GATTGCCACAGCTATAGTTT+TGG + Chr6:111482054-111482073 MsG0680035743.01.T01:intron 40.0%
! GGTTCTGTAAGCTTCTTTTG+TGG + Chr6:111479963-111479982 MsG0680035743.01.T01:CDS 40.0%
! TAGACTTGAAGCACCAAATG+TGG - Chr6:111479907-111479926 None:intergenic 40.0%
! TCTTGCATTATTGGAGCACT+TGG + Chr6:111479255-111479274 MsG0680035743.01.T01:CDS 40.0%
! TGGTAGGAGAGCTTTCTTTT+TGG + Chr6:111481390-111481409 MsG0680035743.01.T01:CDS 40.0%
!! ACAAGACTGTTTGGTGTTTC+TGG - Chr6:111481022-111481041 None:intergenic 40.0%
!! AGAGCTTTCTTTTTGGAAGC+TGG + Chr6:111481397-111481416 MsG0680035743.01.T01:CDS 40.0%
!! ATGGCTTTGGTTGACAAGTT+TGG + Chr6:111481370-111481389 MsG0680035743.01.T01:CDS 40.0%
!! CTTGGAGTTGGTATTGGATT+TGG + Chr6:111480044-111480063 MsG0680035743.01.T01:CDS 40.0%
!! GCTTCTTAACTTGTGCCTTA+AGG + Chr6:111481613-111481632 MsG0680035743.01.T01:intron 40.0%
!! GGATATGATCTTGGTGTTTC+AGG + Chr6:111479291-111479310 MsG0680035743.01.T01:CDS 40.0%
!!! TTGGCTACTTGTTTTGGAGA+TGG + Chr6:111482073-111482092 MsG0680035743.01.T01:CDS 40.0%
AAGGAAGAATTGTGCGACGA+TGG - Chr6:111482275-111482294 None:intergenic 45.0%
AGAAAATTCACCCTTGGGGA+TGG + Chr6:111480933-111480952 MsG0680035743.01.T01:CDS 45.0%
CATAAAGATGAGCCCTCTTG+AGG - Chr6:111479206-111479225 None:intergenic 45.0%
CCAAGGAGTTCACTTGAAAG+GGG - Chr6:111479490-111479509 None:intergenic 45.0%
CCCAAGGAGTTCACTTGAAA+GGG - Chr6:111479491-111479510 None:intergenic 45.0%
CCTTGTTCCACAAGACTGTT+TGG - Chr6:111481031-111481050 None:intergenic 45.0%
GGACGTATTCTTCTTGGAGT+TGG + Chr6:111480032-111480051 MsG0680035743.01.T01:CDS 45.0%
TAAGGTGGCAAAGTGACACA+AGG - Chr6:111482294-111482313 None:intergenic 45.0%
! CATGCTAACTCGTGTCGTTA+GGG + Chr6:111481475-111481494 MsG0680035743.01.T01:intron 45.0%
! CATTATTGGAGCACTTGGTG+GGG + Chr6:111479260-111479279 MsG0680035743.01.T01:CDS 45.0%
! CCAAACAGTCTTGTGGAACA+AGG + Chr6:111481028-111481047 MsG0680035743.01.T01:CDS 45.0%
! CCCTTTCAAGTGAACTCCTT+GGG + Chr6:111479488-111479507 MsG0680035743.01.T01:intron 45.0%
! CCTTTCAAGTGAACTCCTTG+GGG + Chr6:111479489-111479508 MsG0680035743.01.T01:intron 45.0%
! CTACTCTTCCTTCGTCGATT+CGG - Chr6:111481054-111481073 None:intergenic 45.0%
! GCATTATTGGAGCACTTGGT+GGG + Chr6:111479259-111479278 MsG0680035743.01.T01:CDS 45.0%
! TCATGCTAACTCGTGTCGTT+AGG + Chr6:111481474-111481493 MsG0680035743.01.T01:intron 45.0%
! TGCATTATTGGAGCACTTGG+TGG + Chr6:111479258-111479277 MsG0680035743.01.T01:CDS 45.0%
!! CTTGCTTGGTTTCTGGCAAT+AGG - Chr6:111482378-111482397 None:intergenic 45.0%
!! GTCATCTGCACAAAGTGTTG+TGG + Chr6:111482225-111482244 MsG0680035743.01.T01:CDS 45.0%
AAATTCACCCTTGGGGATGG+AGG + Chr6:111480936-111480955 MsG0680035743.01.T01:CDS 50.0%
ACTAGGAACCAACCACCCTA+AGG - Chr6:111482182-111482201 None:intergenic 50.0%
AGATGGTAGCACCCTCAAGA+GGG + Chr6:111479191-111479210 MsG0680035743.01.T01:CDS 50.0%
CCCCAAGGAGTTCACTTGAA+AGG - Chr6:111479492-111479511 None:intergenic 50.0%
CGACGAAGGAAGAGTAGTAC+TGG + Chr6:111481057-111481076 MsG0680035743.01.T01:CDS 50.0%
CTAGGAACCAACCACCCTAA+GGG - Chr6:111482181-111482200 None:intergenic 50.0%
GAAGATCTTGGGGTCCCTTA+GGG + Chr6:111482164-111482183 MsG0680035743.01.T01:CDS 50.0%
GCTGCTCTTGTGTCCACATT+TGG + Chr6:111479891-111479910 MsG0680035743.01.T01:CDS 50.0%
! CCCCTTTCAAGTGAACTCCT+TGG + Chr6:111479487-111479506 MsG0680035743.01.T01:intron 50.0%
!! CACAGGTGGTGTTACTTCCA+TGG + Chr6:111479746-111479765 MsG0680035743.01.T01:intron 50.0%
AAGGATAGCCTCCATCCCCA+AGG - Chr6:111480947-111480966 None:intergenic 55.0%
AGGATAGCCTCCATCCCCAA+GGG - Chr6:111480946-111480965 None:intergenic 55.0%
CAGATGGTAGCACCCTCAAG+AGG + Chr6:111479190-111479209 MsG0680035743.01.T01:CDS 55.0%
CATAAGGTGGGGTGGTCTGA+TGG - Chr6:111480410-111480429 None:intergenic 55.0%
GAACAAGGCCGAATCGACGA+AGG + Chr6:111481043-111481062 MsG0680035743.01.T01:CDS 55.0%
GGAAGATCTTGGGGTCCCTT+AGG + Chr6:111482163-111482182 MsG0680035743.01.T01:CDS 55.0%
TGGGGATGGAGGCTATCCTT+AGG + Chr6:111480947-111480966 MsG0680035743.01.T01:CDS 55.0%
! GCACTTGGTGGGGCTCTATT+TGG + Chr6:111479270-111479289 MsG0680035743.01.T01:CDS 55.0%
! GCAGGTGGAGCATTTGCAGA+TGG + Chr6:111479174-111479193 MsG0680035743.01.T01:CDS 55.0%
GATCTTGGGGTCCCTTAGGG+TGG + Chr6:111482167-111482186 MsG0680035743.01.T01:CDS 60.0%
TTGGGGTCCCTTAGGGTGGT+TGG + Chr6:111482171-111482190 MsG0680035743.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 111479171 111482492 111479171 ID=MsG0680035743.01;Name=MsG0680035743.01
Chr6 mRNA 111479171 111482492 111479171 ID=MsG0680035743.01.T01;Parent=MsG0680035743.01;Name=MsG0680035743.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|4|0|510
Chr6 exon 111479171 111479312 111479171 ID=MsG0680035743.01.T01:exon:9201;Parent=MsG0680035743.01.T01
Chr6 exon 111479751 111480073 111479751 ID=MsG0680035743.01.T01:exon:9202;Parent=MsG0680035743.01.T01
Chr6 exon 111480812 111481441 111480812 ID=MsG0680035743.01.T01:exon:9203;Parent=MsG0680035743.01.T01
Chr6 exon 111482055 111482492 111482055 ID=MsG0680035743.01.T01:exon:9204;Parent=MsG0680035743.01.T01
Chr6 CDS 111479171 111479312 111479171 ID=MsG0680035743.01.T01:cds;Parent=MsG0680035743.01.T01
Chr6 CDS 111479751 111480073 111479751 ID=MsG0680035743.01.T01:cds;Parent=MsG0680035743.01.T01
Chr6 CDS 111480812 111481441 111480812 ID=MsG0680035743.01.T01:cds;Parent=MsG0680035743.01.T01
Chr6 CDS 111482055 111482492 111482055 ID=MsG0680035743.01.T01:cds;Parent=MsG0680035743.01.T01
Gene Sequence

>MsG0680035743.01.T01

ATGGCAGGTGGAGCATTTGCAGATGGTAGCACCCTCAAGAGGGCTCATCTTTATGAGCATAAGATAACTGGATATCTCATATTTTCTTGCATTATTGGAGCACTTGGTGGGGCTCTATTTGGATATGATCTTGGTGTTTCAGGTGGTGTTACTTCCATGGATGATTTCCTCATTGAATTCTTCCCAAATGTGTATGAGAGGAAGCATGCAAAACTTCAAGAAACAGATTATTGTAAATATGATGATCAAATATTGACACTATTTACTTCATCTCTCTACTTTGCTGCTCTTGTGTCCACATTTGGTGCTTCAAGTCTAACAAAAAACAAAGGAAGGAGAGCTAGTATCTTAGTTGGTTCTGTAAGCTTCTTTTGTGGAGCTATTCTCAATGCAGCTGCCAAGAATATAGCAATGCTGATCATTGGACGTATTCTTCTTGGAGTTGGTATTGGATTTGGAAATCAAGCTGTTCCTCTATATCTTTCAGAAATGGCACCAGCAAAAATTAGAGGAGCAGTGAACCAACTCTTCCAGTTAACAACATGTTTAGGAATTTTGATTGCTAACCTTGTGAATTATGGTACTGAGAAAATTCACCCTTGGGGATGGAGGCTATCCTTAGGTTTAGCAACAGTTCCAGCAACATTCATGTTCATTGGAGGCGTTTTTTGTCCAGAAACACCAAACAGTCTTGTGGAACAAGGCCGAATCGACGAAGGAAGAGTAGTACTGGAAAAGATTAGAGGAACAAGAAATGTTGATGCAGAATTCGATGATCTTATTGAGGCTAGCAGAGAAGCAAAATCTATTAAGAATCCATTTCAGAATCTCCTTTTGAGAAAGAATAGACCTCAATTCATCATTGGTGCAATTTGTATTCCAGCATTTCAACAACTAACTGGAAACAACTCTATTCTATTCTATGCTCCTGTTATTTTCCAAACAATTGGATTTGGCTCTGGTGCATCTCTATATTCATCTGTTATTACAAGTGTTGCTCTTGTTCTTGCTACACTCATCTCAATGGCTTTGGTTGACAAGTTTGGTAGGAGAGCTTTCTTTTTGGAAGCTGGTACTGAAATGATAATATGCATGATTGCCACAGCTATAGTTTTGGCTACTTGTTTTGGAGATGGAAAACAACTGTCATTTGGAGTTGCTATCTTTCTAGTTTTAGTGATTTTCTTATTTGTTTTGGCATATGGAAGATCTTGGGGTCCCTTAGGGTGGTTGGTTCCTAGTGAACTCTTTCCATTAGAGATAAGGTCATCTGCACAAAGTGTTGTGGTGTGTGTCAACATGATCTTCACAGCCATCGTCGCACAATTCTTCCTTGTGTCACTTTGCCACCTTAAATACGGAATCTTCTTGCTTTTTGCTGCATTGATTGTCCTTATGAGCTGCTTTGTCTACTTCCTATTGCCAGAAACCAAGCAAGTTCCAATTGAAGAGATTTATCTTCTGTTTGAGAATCATTGGTTTTGGAAGAATATTGTCAAGGACGAAAACAAGGGGTCCGAGACACAAGCATAA

Protein sequence

>MsG0680035743.01.T01

MAGGAFADGSTLKRAHLYEHKITGYLIFSCIIGALGGALFGYDLGVSGGVTSMDDFLIEFFPNVYERKHAKLQETDYCKYDDQILTLFTSSLYFAALVSTFGASSLTKNKGRRASILVGSVSFFCGAILNAAAKNIAMLIIGRILLGVGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILIANLVNYGTEKIHPWGWRLSLGLATVPATFMFIGGVFCPETPNSLVEQGRIDEGRVVLEKIRGTRNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQFIIGAICIPAFQQLTGNNSILFYAPVIFQTIGFGSGASLYSSVITSVALVLATLISMALVDKFGRRAFFLEAGTEMIICMIATAIVLATCFGDGKQLSFGVAIFLVLVIFLFVLAYGRSWGPLGWLVPSELFPLEIRSSAQSVVVCVNMIFTAIVAQFFLVSLCHLKYGIFLLFAALIVLMSCFVYFLLPETKQVPIEEIYLLFENHWFWKNIVKDENKGSETQA*