Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043652.01.T01 | XP_003627852.2 | 97.529 | 526 | 12 | 1 | 1 | 525 | 1 | 526 | 0 | 1045 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043652.01.T01 | Q9SA38 | 46.243 | 519 | 262 | 5 | 1 | 509 | 1 | 512 | 7.53E-173 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043652.01.T01 | A0A396GH00 | 97.529 | 526 | 12 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1045 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043652.01.T01 | MTR_8g039190 | 97.338 | 526 | 13 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1040 |
| MsG0880043652.01.T01 | MTR_8g039070 | 89.734 | 526 | 17 | 3 | 1 | 525 | 1 | 490 | 0.0 | 938 |
| MsG0880043652.01.T01 | MTR_5g080050 | 86.233 | 523 | 66 | 3 | 1 | 518 | 1 | 522 | 0.0 | 909 |
| MsG0880043652.01.T01 | MTR_5g082760 | 83.459 | 532 | 74 | 3 | 1 | 518 | 1 | 532 | 0.0 | 888 |
| MsG0880043652.01.T01 | MTR_4g030040 | 71.285 | 498 | 138 | 3 | 11 | 507 | 12 | 505 | 0.0 | 723 |
| MsG0880043652.01.T01 | MTR_4g030040 | 70.259 | 501 | 142 | 3 | 8 | 507 | 10 | 504 | 0.0 | 719 |
| MsG0880043652.01.T01 | MTR_4g030210 | 71.285 | 498 | 138 | 2 | 11 | 507 | 16 | 509 | 0.0 | 714 |
| MsG0880043652.01.T01 | MTR_8g447340 | 43.590 | 507 | 272 | 5 | 12 | 507 | 15 | 518 | 4.86e-159 | 463 |
| MsG0880043652.01.T01 | MTR_2g081930 | 31.712 | 514 | 326 | 10 | 9 | 504 | 17 | 523 | 1.16e-77 | 253 |
| MsG0880043652.01.T01 | MTR_4g120720 | 39.016 | 305 | 147 | 5 | 77 | 377 | 2 | 271 | 2.08e-65 | 213 |
| MsG0880043652.01.T01 | MTR_2g081950 | 30.867 | 392 | 242 | 8 | 128 | 499 | 18 | 400 | 8.96e-48 | 171 |
| MsG0880043652.01.T01 | MTR_4g081490 | 29.337 | 392 | 251 | 7 | 129 | 507 | 66 | 444 | 2.03e-47 | 171 |
| MsG0880043652.01.T01 | MTR_2g081960 | 32.031 | 128 | 83 | 2 | 7 | 133 | 16 | 140 | 1.46e-16 | 77.0 |
| MsG0880043652.01.T01 | MTR_4g081480 | 29.600 | 125 | 80 | 2 | 10 | 129 | 23 | 144 | 4.21e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043652.01.T01 | AT1G16390 | 46.243 | 519 | 262 | 5 | 1 | 509 | 1 | 512 | 7.68e-174 | 501 |
| MsG0880043652.01.T01 | AT1G79360 | 48.024 | 506 | 250 | 8 | 24 | 516 | 19 | 524 | 6.87e-172 | 496 |
| MsG0880043652.01.T01 | AT1G16370 | 44.356 | 505 | 267 | 9 | 16 | 513 | 21 | 518 | 8.83e-150 | 439 |
| MsG0880043652.01.T01 | AT1G79410 | 43.217 | 516 | 280 | 8 | 1 | 510 | 1 | 509 | 1.45e-146 | 431 |
| MsG0880043652.01.T01 | AT1G73220 | 38.521 | 514 | 288 | 9 | 11 | 507 | 27 | 529 | 2.60e-106 | 328 |
| MsG0880043652.01.T01 | AT3G20660 | 29.868 | 529 | 335 | 9 | 8 | 523 | 19 | 524 | 4.04e-74 | 244 |
| MsG0880043652.01.T01 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 4.21e-14 | 75.9 |
| MsG0880043652.01.T01 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 4.62e-14 | 75.5 |
| MsG0880043652.01.T01 | AT3G51490 | 29.714 | 175 | 117 | 3 | 123 | 293 | 3 | 175 | 9.42e-14 | 74.3 |
| MsG0880043652.01.T01 | AT1G20840 | 26.250 | 160 | 107 | 2 | 141 | 293 | 68 | 223 | 3.44e-12 | 69.7 |
| MsG0880043652.01.T01 | AT1G20840 | 26.250 | 160 | 107 | 2 | 141 | 293 | 68 | 223 | 3.44e-12 | 69.7 |
Find 70 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTAGCTGTTGGAAATTT+AGG | 0.100486 | 8:+28447198 | MsG0880043652.01.T01:CDS |
| TTCTTTATAGGTTGTCTTCT+TGG | 0.148431 | 8:+28446538 | MsG0880043652.01.T01:CDS |
| CCACAGTCTTCTTTCTTTAT+AGG | 0.161186 | 8:+28446526 | MsG0880043652.01.T01:CDS |
| TGAAATTCTTGACTGGTTTC+TGG | 0.161801 | 8:+28446692 | MsG0880043652.01.T01:CDS |
| ATGATAGCTGTTATGATTCT+TGG | 0.200882 | 8:+28447144 | MsG0880043652.01.T01:CDS |
| TTTAGGATTCAACATTTATT+TGG | 0.226455 | 8:+28447215 | MsG0880043652.01.T01:CDS |
| ATTTCATCCCATGATAAAAT+TGG | 0.227150 | 8:-28446235 | None:intergenic |
| TTGTGTAGCAACATATTTCT+TGG | 0.258918 | 8:+28447272 | MsG0880043652.01.T01:CDS |
| CCTCCCCGCCGATATCAAAA+AGG | 0.267652 | 8:-28447544 | None:intergenic |
| TTGTGTGATGTGTGCTGTTT+TGG | 0.274294 | 8:+28447350 | MsG0880043652.01.T01:CDS |
| GTAAACTCCCAAGATCTTCT+TGG | 0.282784 | 8:+28446425 | MsG0880043652.01.T01:CDS |
| GAATTTGTGCAGTGCCATTT+TGG | 0.286472 | 8:-28446376 | None:intergenic |
| ACACTGATAATTATCCAAAA+TGG | 0.291848 | 8:+28446362 | MsG0880043652.01.T01:CDS |
| ATTTACTCATATGGTGTGTT+TGG | 0.306270 | 8:+28447576 | MsG0880043652.01.T01:CDS |
| TGCTCAATAGAATGAGATTC+AGG | 0.310523 | 8:-28446202 | None:intergenic |
| CGTGGAAATCTCTTTACATT+TGG | 0.314910 | 8:+28446863 | MsG0880043652.01.T01:CDS |
| CCATTCAGCGCTAACTTTCT+CGG | 0.316763 | 8:-28446752 | None:intergenic |
| GCATTAGCTGATTCATCTAT+TGG | 0.326922 | 8:+28446577 | MsG0880043652.01.T01:CDS |
| GCTGTTATGATTCTTGGAAT+TGG | 0.328512 | 8:+28447150 | MsG0880043652.01.T01:CDS |
| CAAAATGAACAATGTAATAT+TGG | 0.329024 | 8:-28447616 | None:intergenic |
| TCCCAAGATCTTCTTGGTCT+TGG | 0.333286 | 8:+28446431 | MsG0880043652.01.T01:CDS |
| TTTCAACTTTACTCATCAAT+AGG | 0.345221 | 8:+28447087 | MsG0880043652.01.T01:CDS |
| GGACTTGGAATGGTTTATTT+CGG | 0.368666 | 8:+28447171 | MsG0880043652.01.T01:CDS |
| CAAACACAATCATTTCTCAT+TGG | 0.381344 | 8:+28446467 | MsG0880043652.01.T01:CDS |
| CCCAAGATCTTCTTGGTCTT+GGG | 0.388239 | 8:+28446432 | MsG0880043652.01.T01:CDS |
| GAGAATTGTTTCATAAAAGA+TGG | 0.402166 | 8:+28447109 | MsG0880043652.01.T01:CDS |
| GTGAGACAAGCTATTGTGTT+TGG | 0.405620 | 8:+28447507 | MsG0880043652.01.T01:CDS |
| GAGATTTCCACGAAGAGTTT+CGG | 0.407414 | 8:-28446852 | None:intergenic |
| ATAGAAAACACAAGAATTGA+AGG | 0.420097 | 8:-28447312 | None:intergenic |
| TCCCAAGACCAAGAAGATCT+TGG | 0.437312 | 8:-28446433 | None:intergenic |
| GGTTTCTGGCGTTCATCCAT+CGG | 0.445814 | 8:+28446706 | MsG0880043652.01.T01:CDS |
| CCGAGAAAGTTAGCGCTGAA+TGG | 0.463476 | 8:+28446752 | MsG0880043652.01.T01:CDS |
| ATGATTCTTGGAATTGGACT+TGG | 0.469021 | 8:+28447156 | MsG0880043652.01.T01:CDS |
| CCCAAGACCAAGAAGATCTT+GGG | 0.475977 | 8:-28446432 | None:intergenic |
| TTCGGTATGCCACTAGCTGT+TGG | 0.482710 | 8:+28447189 | MsG0880043652.01.T01:CDS |
| GTTTCTGGCGTTCATCCATC+GGG | 0.485333 | 8:+28446707 | MsG0880043652.01.T01:CDS |
| TAGAGTACCAGCTGCTAAAG+TGG | 0.498469 | 8:+28447377 | MsG0880043652.01.T01:CDS |
| TGAGAAATGATTGTGTTTGA+AGG | 0.499350 | 8:-28446463 | None:intergenic |
| GAAACCAGTCAAGAATTTCA+TGG | 0.500112 | 8:-28446689 | None:intergenic |
| TTCATGTTGATTCATGGCAT+CGG | 0.501306 | 8:-28447706 | None:intergenic |
| ATGGGGTACATGTCTTTACC+TGG | 0.502965 | 8:+28446814 | MsG0880043652.01.T01:CDS |
| AGAACAATCCCTATAGTCTC+TGG | 0.504851 | 8:-28447639 | None:intergenic |
| ATATTAACCGAAACTCTTCG+TGG | 0.514113 | 8:+28446845 | MsG0880043652.01.T01:CDS |
| GATTGTTCTTTGTGATACAA+TGG | 0.520244 | 8:+28447653 | MsG0880043652.01.T01:CDS |
| TCTTGGAATTGGACTTGGAA+TGG | 0.524447 | 8:+28447161 | MsG0880043652.01.T01:CDS |
| AGAATTGTTTCATAAAAGAT+GGG | 0.525041 | 8:+28447110 | MsG0880043652.01.T01:CDS |
| CCTAAATTTCCAACAGCTAG+TGG | 0.527532 | 8:-28447198 | None:intergenic |
| AAATATGTTGCTACACAAGA+AGG | 0.528534 | 8:-28447267 | None:intergenic |
| TCCGCCATGAAATTCTTGAC+TGG | 0.529656 | 8:+28446685 | MsG0880043652.01.T01:CDS |
| GCTAAAACCACTTTAGCAGC+TGG | 0.531986 | 8:-28447384 | None:intergenic |
| TGTTGAAAAGATTATGAGCA+TGG | 0.555849 | 8:-28446647 | None:intergenic |
| GCTGAATGGCGGTTTAGAGT+TGG | 0.556204 | 8:+28446766 | MsG0880043652.01.T01:CDS |
| TGTGCTAGCACATTCATCAC+TGG | 0.561957 | 8:+28446499 | MsG0880043652.01.T01:CDS |
| GAGAAATGATTGTGTTTGAA+GGG | 0.574527 | 8:-28446462 | None:intergenic |
| TCTTTGTTACCGAGTCGCCT+AGG | 0.584227 | 8:+28446926 | MsG0880043652.01.T01:CDS |
| ATGACAGAGTAACATATAGC+AGG | 0.585106 | 8:-28446895 | None:intergenic |
| CGGTTAATATAAGCGAAACC+AGG | 0.588496 | 8:-28446832 | None:intergenic |
| AACAAGCCACCTAGGCGACT+CGG | 0.591181 | 8:-28446935 | None:intergenic |
| CCTAGGTGGCTTGTTATGCA+AGG | 0.598767 | 8:+28446943 | MsG0880043652.01.T01:CDS |
| AGTTTACAAATATCAGAGGA+TGG | 0.609310 | 8:-28446409 | None:intergenic |
| AACAAGAACACATGTCCCGA+TGG | 0.611953 | 8:-28446722 | None:intergenic |
| TGGGAGTTTACAAATATCAG+AGG | 0.623076 | 8:-28446413 | None:intergenic |
| GAGGAACACAACAACGTCGT+TGG | 0.627045 | 8:+28447485 | MsG0880043652.01.T01:CDS |
| GTTGTGTTCCTCACACATGT+CGG | 0.637523 | 8:-28447474 | None:intergenic |
| CCTTGCATAACAAGCCACCT+AGG | 0.639898 | 8:-28446943 | None:intergenic |
| AGTTGTTTCCGACATGTGTG+AGG | 0.640373 | 8:+28447466 | MsG0880043652.01.T01:CDS |
| AGAAAGTTAGCGCTGAATGG+CGG | 0.664310 | 8:+28446755 | MsG0880043652.01.T01:CDS |
| TTGTTACCGAGTCGCCTAGG+TGG | 0.668506 | 8:+28446929 | MsG0880043652.01.T01:CDS |
| CCTATAAAGAAAGAAGACTG+TGG | 0.727528 | 8:-28446526 | None:intergenic |
| ACCAGTCAAGAATTTCATGG+CGG | 0.749781 | 8:-28446686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGTTTATCAAATTTT+GGG | + | Chr8:28446263-28446282 | MsG0880043652.01.T01:CDS | 10.0% |
| !! | AAAAACAATATTTACTCATA+TGG | + | Chr8:28447567-28447586 | MsG0880043652.01.T01:CDS | 15.0% |
| !!! | AAAAATGAAACTTTTTCTTT+TGG | - | Chr8:28447069-28447088 | None:intergenic | 15.0% |
| !!! | AAAATGAAACTTTTTCTTTT+GGG | - | Chr8:28447068-28447087 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTTTATCAAATTT+TGG | + | Chr8:28446262-28446281 | MsG0880043652.01.T01:CDS | 15.0% |
| !! | AGAATTGTTTCATAAAAGAT+GGG | + | Chr8:28447110-28447129 | MsG0880043652.01.T01:CDS | 20.0% |
| !! | CAAAATGAACAATGTAATAT+TGG | - | Chr8:28447619-28447638 | None:intergenic | 20.0% |
| !!! | AAAAGAAACCAATTTTATCA+TGG | + | Chr8:28446227-28446246 | MsG0880043652.01.T01:CDS | 20.0% |
| !!! | AAAGAAACCAATTTTATCAT+GGG | + | Chr8:28446228-28446247 | MsG0880043652.01.T01:CDS | 20.0% |
| !!! | AAATGAAACTTTTTCTTTTG+GGG | - | Chr8:28447067-28447086 | None:intergenic | 20.0% |
| !!! | TAATCTTTTCAACAAATGTT+TGG | + | Chr8:28446656-28446675 | MsG0880043652.01.T01:CDS | 20.0% |
| !!! | TTTAGGATTCAACATTTATT+TGG | + | Chr8:28447215-28447234 | MsG0880043652.01.T01:CDS | 20.0% |
| ! | ACACTGATAATTATCCAAAA+TGG | + | Chr8:28446362-28446381 | MsG0880043652.01.T01:CDS | 25.0% |
| ! | ATAGAAAACACAAGAATTGA+AGG | - | Chr8:28447315-28447334 | None:intergenic | 25.0% |
| ! | ATGAATCAACATGAAAAAAG+AGG | + | Chr8:28447714-28447733 | MsG0880043652.01.T01:CDS | 25.0% |
| ! | ATTTCATCCCATGATAAAAT+TGG | - | Chr8:28446238-28446257 | None:intergenic | 25.0% |
| ! | GAGAATTGTTTCATAAAAGA+TGG | + | Chr8:28447109-28447128 | MsG0880043652.01.T01:CDS | 25.0% |
| ! | TTTCAACTTTACTCATCAAT+AGG | + | Chr8:28447087-28447106 | MsG0880043652.01.T01:CDS | 25.0% |
| !! | AAAGTTTATCAAATTTTGGG+TGG | + | Chr8:28446266-28446285 | MsG0880043652.01.T01:CDS | 25.0% |
| !! | AGTATTTTACTTTCACAATG+GGG | + | Chr8:28446797-28446816 | MsG0880043652.01.T01:CDS | 25.0% |
| !! | ATTCTTGTGTTTTCTATCTT+AGG | + | Chr8:28447318-28447337 | MsG0880043652.01.T01:CDS | 25.0% |
| !! | GAGTATTTTACTTTCACAAT+GGG | + | Chr8:28446796-28446815 | MsG0880043652.01.T01:CDS | 25.0% |
| !! | TGAGTATTTTACTTTCACAA+TGG | + | Chr8:28446795-28446814 | MsG0880043652.01.T01:CDS | 25.0% |
| !!! | AATGAAACTTTTTCTTTTGG+GGG | - | Chr8:28447066-28447085 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCATGTTGATTCA+TGG | - | Chr8:28447715-28447734 | None:intergenic | 25.0% |
| AAATATGTTGCTACACAAGA+AGG | - | Chr8:28447270-28447289 | None:intergenic | 30.0% | |
| AGTTTACAAATATCAGAGGA+TGG | - | Chr8:28446412-28446431 | None:intergenic | 30.0% | |
| ATGATAGCTGTTATGATTCT+TGG | + | Chr8:28447144-28447163 | MsG0880043652.01.T01:CDS | 30.0% | |
| ATTTACTCATATGGTGTGTT+TGG | + | Chr8:28447576-28447595 | MsG0880043652.01.T01:CDS | 30.0% | |
| CAAACACAATCATTTCTCAT+TGG | + | Chr8:28446467-28446486 | MsG0880043652.01.T01:CDS | 30.0% | |
| GAGAAATGATTGTGTTTGAA+GGG | - | Chr8:28446465-28446484 | None:intergenic | 30.0% | |
| GATTGTTCTTTGTGATACAA+TGG | + | Chr8:28447653-28447672 | MsG0880043652.01.T01:CDS | 30.0% | |
| TGAGAAATGATTGTGTTTGA+AGG | - | Chr8:28446466-28446485 | None:intergenic | 30.0% | |
| TGTTGAAAAGATTATGAGCA+TGG | - | Chr8:28446650-28446669 | None:intergenic | 30.0% | |
| TTCTTTATAGGTTGTCTTCT+TGG | + | Chr8:28446538-28446557 | MsG0880043652.01.T01:CDS | 30.0% | |
| TTGTGTAGCAACATATTTCT+TGG | + | Chr8:28447272-28447291 | MsG0880043652.01.T01:CDS | 30.0% | |
| ! | ATTCTGTCCCTTTTTGATAT+CGG | + | Chr8:28447536-28447555 | MsG0880043652.01.T01:CDS | 30.0% |
| ! | TTAGCAATGGTTGCATTTTT+CGG | + | Chr8:28447402-28447421 | MsG0880043652.01.T01:CDS | 30.0% |
| !! | TTTATCAAATTTTGGGTGGA+TGG | + | Chr8:28446270-28446289 | MsG0880043652.01.T01:CDS | 30.0% |
| !!! | AGTAGTTTTTAGTGCTTCAA+TGG | + | Chr8:28447239-28447258 | MsG0880043652.01.T01:CDS | 30.0% |
| ATATTAACCGAAACTCTTCG+TGG | + | Chr8:28446845-28446864 | MsG0880043652.01.T01:CDS | 35.0% | |
| ATGACAGAGTAACATATAGC+AGG | - | Chr8:28446898-28446917 | None:intergenic | 35.0% | |
| ATGATTCTTGGAATTGGACT+TGG | + | Chr8:28447156-28447175 | MsG0880043652.01.T01:CDS | 35.0% | |
| CCACAGTCTTCTTTCTTTAT+AGG | + | Chr8:28446526-28446545 | MsG0880043652.01.T01:CDS | 35.0% | |
| CCTATAAAGAAAGAAGACTG+TGG | - | Chr8:28446529-28446548 | None:intergenic | 35.0% | |
| CGTGGAAATCTCTTTACATT+TGG | + | Chr8:28446863-28446882 | MsG0880043652.01.T01:CDS | 35.0% | |
| GAAACCAGTCAAGAATTTCA+TGG | - | Chr8:28446692-28446711 | None:intergenic | 35.0% | |
| GCTGTTATGATTCTTGGAAT+TGG | + | Chr8:28447150-28447169 | MsG0880043652.01.T01:CDS | 35.0% | |
| GGACTTGGAATGGTTTATTT+CGG | + | Chr8:28447171-28447190 | MsG0880043652.01.T01:CDS | 35.0% | |
| TGCTCAATAGAATGAGATTC+AGG | - | Chr8:28446205-28446224 | None:intergenic | 35.0% | |
| TGGGAGTTTACAAATATCAG+AGG | - | Chr8:28446416-28446435 | None:intergenic | 35.0% | |
| ! | CTTGTGTTTTCTATCTTAGG+TGG | + | Chr8:28447321-28447340 | MsG0880043652.01.T01:CDS | 35.0% |
| ! | GCATTAGCTGATTCATCTAT+TGG | + | Chr8:28446577-28446596 | MsG0880043652.01.T01:CDS | 35.0% |
| ! | TCATTTTGCCAGAGACTATA+GGG | + | Chr8:28447631-28447650 | MsG0880043652.01.T01:CDS | 35.0% |
| ! | TTCATTTTGCCAGAGACTAT+AGG | + | Chr8:28447630-28447649 | MsG0880043652.01.T01:CDS | 35.0% |
| !! | TGAAATTCTTGACTGGTTTC+TGG | + | Chr8:28446692-28446711 | MsG0880043652.01.T01:CDS | 35.0% |
| !! | TTCATGTTGATTCATGGCAT+CGG | - | Chr8:28447709-28447728 | None:intergenic | 35.0% |
| !!! | TGCTAAAGTGGTTTTAGCAA+TGG | + | Chr8:28447389-28447408 | MsG0880043652.01.T01:CDS | 35.0% |
| ACCAGTCAAGAATTTCATGG+CGG | - | Chr8:28446689-28446708 | None:intergenic | 40.0% | |
| AGAACAATCCCTATAGTCTC+TGG | - | Chr8:28447642-28447661 | None:intergenic | 40.0% | |
| CCACTAGCTGTTGGAAATTT+AGG | + | Chr8:28447198-28447217 | MsG0880043652.01.T01:CDS | 40.0% | |
| CCTAAATTTCCAACAGCTAG+TGG | - | Chr8:28447201-28447220 | None:intergenic | 40.0% | |
| CGGTTAATATAAGCGAAACC+AGG | - | Chr8:28446835-28446854 | None:intergenic | 40.0% | |
| GAGATTTCCACGAAGAGTTT+CGG | - | Chr8:28446855-28446874 | None:intergenic | 40.0% | |
| GTAAACTCCCAAGATCTTCT+TGG | + | Chr8:28446425-28446444 | MsG0880043652.01.T01:CDS | 40.0% | |
| GTGAGACAAGCTATTGTGTT+TGG | + | Chr8:28447507-28447526 | MsG0880043652.01.T01:CDS | 40.0% | |
| TCTTGGAATTGGACTTGGAA+TGG | + | Chr8:28447161-28447180 | MsG0880043652.01.T01:CDS | 40.0% | |
| !! | TTTTCTTTTGGGGGCAGTTT+TGG | - | Chr8:28447057-28447076 | None:intergenic | 40.0% |
| !!! | GAATTTGTGCAGTGCCATTT+TGG | - | Chr8:28446379-28446398 | None:intergenic | 40.0% |
| !!! | TTGTGTGATGTGTGCTGTTT+TGG | + | Chr8:28447350-28447369 | MsG0880043652.01.T01:CDS | 40.0% |
| AACAAGAACACATGTCCCGA+TGG | - | Chr8:28446725-28446744 | None:intergenic | 45.0% | |
| ATGGGGTACATGTCTTTACC+TGG | + | Chr8:28446814-28446833 | MsG0880043652.01.T01:CDS | 45.0% | |
| CCATTCAGCGCTAACTTTCT+CGG | - | Chr8:28446755-28446774 | None:intergenic | 45.0% | |
| CCCAAGACCAAGAAGATCTT+GGG | - | Chr8:28446435-28446454 | None:intergenic | 45.0% | |
| GCTAAAACCACTTTAGCAGC+TGG | - | Chr8:28447387-28447406 | None:intergenic | 45.0% | |
| GTTGTGTTCCTCACACATGT+CGG | - | Chr8:28447477-28447496 | None:intergenic | 45.0% | |
| TCCCAAGACCAAGAAGATCT+TGG | - | Chr8:28446436-28446455 | None:intergenic | 45.0% | |
| TCCCAAGATCTTCTTGGTCT+TGG | + | Chr8:28446431-28446450 | MsG0880043652.01.T01:CDS | 45.0% | |
| TCCGCCATGAAATTCTTGAC+TGG | + | Chr8:28446685-28446704 | MsG0880043652.01.T01:CDS | 45.0% | |
| TGTGCTAGCACATTCATCAC+TGG | + | Chr8:28446499-28446518 | MsG0880043652.01.T01:CDS | 45.0% | |
| ! | AGAAAGTTAGCGCTGAATGG+CGG | + | Chr8:28446755-28446774 | MsG0880043652.01.T01:CDS | 45.0% |
| ! | AGTTGTTTCCGACATGTGTG+AGG | + | Chr8:28447466-28447485 | MsG0880043652.01.T01:CDS | 45.0% |
| ! | CCCAAGATCTTCTTGGTCTT+GGG | + | Chr8:28446432-28446451 | MsG0880043652.01.T01:CDS | 45.0% |
| ! | CTGTCCCTTTTTGATATCGG+CGG | + | Chr8:28447539-28447558 | MsG0880043652.01.T01:CDS | 45.0% |
| ! | TAGAGTACCAGCTGCTAAAG+TGG | + | Chr8:28447377-28447396 | MsG0880043652.01.T01:CDS | 45.0% |
| ! | TGTCCCTTTTTGATATCGGC+GGG | + | Chr8:28447540-28447559 | MsG0880043652.01.T01:CDS | 45.0% |
| !! | TGCATTTTTCGGCGCTTGTA+CGG | + | Chr8:28447413-28447432 | MsG0880043652.01.T01:CDS | 45.0% |
| CCTTGCATAACAAGCCACCT+AGG | - | Chr8:28446946-28446965 | None:intergenic | 50.0% | |
| CTCCCCGCCGATATCAAAAA+GGG | - | Chr8:28447546-28447565 | None:intergenic | 50.0% | |
| GAGGAACACAACAACGTCGT+TGG | + | Chr8:28447485-28447504 | MsG0880043652.01.T01:CDS | 50.0% | |
| TCTTTGTTACCGAGTCGCCT+AGG | + | Chr8:28446926-28446945 | MsG0880043652.01.T01:CDS | 50.0% | |
| TTCGGTATGCCACTAGCTGT+TGG | + | Chr8:28447189-28447208 | MsG0880043652.01.T01:CDS | 50.0% | |
| ! | CCGAGAAAGTTAGCGCTGAA+TGG | + | Chr8:28446752-28446771 | MsG0880043652.01.T01:CDS | 50.0% |
| ! | GCTGAATGGCGGTTTAGAGT+TGG | + | Chr8:28446766-28446785 | MsG0880043652.01.T01:CDS | 50.0% |
| ! | GTCCCTTTTTGATATCGGCG+GGG | + | Chr8:28447541-28447560 | MsG0880043652.01.T01:CDS | 50.0% |
| !! | CCTAGGTGGCTTGTTATGCA+AGG | + | Chr8:28446943-28446962 | MsG0880043652.01.T01:CDS | 50.0% |
| !! | GGTTTCTGGCGTTCATCCAT+CGG | + | Chr8:28446706-28446725 | MsG0880043652.01.T01:CDS | 50.0% |
| !! | GTTTCTGGCGTTCATCCATC+GGG | + | Chr8:28446707-28446726 | MsG0880043652.01.T01:CDS | 50.0% |
| AACAAGCCACCTAGGCGACT+CGG | - | Chr8:28446938-28446957 | None:intergenic | 55.0% | |
| CCTCCCCGCCGATATCAAAA+AGG | - | Chr8:28447547-28447566 | None:intergenic | 55.0% | |
| TTGTTACCGAGTCGCCTAGG+TGG | + | Chr8:28446929-28446948 | MsG0880043652.01.T01:CDS | 55.0% | |
| ! | CCTTTTTGATATCGGCGGGG+AGG | + | Chr8:28447544-28447563 | MsG0880043652.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 28446175 | 28447752 | 28446175 | ID=MsG0880043652.01;Name=MsG0880043652.01 |
| Chr8 | mRNA | 28446175 | 28447752 | 28446175 | ID=MsG0880043652.01.T01;Parent=MsG0880043652.01;Name=MsG0880043652.01.T01;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|525 |
| Chr8 | exon | 28446175 | 28447752 | 28446175 | ID=MsG0880043652.01.T01:exon:4866;Parent=MsG0880043652.01.T01 |
| Chr8 | CDS | 28446175 | 28447752 | 28446175 | ID=MsG0880043652.01.T01:cds;Parent=MsG0880043652.01.T01 |
| Gene Sequence |
| Protein sequence |
