Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043656.01.T01 | XP_003627852.2 | 97.358 | 530 | 10 | 1 | 1 | 530 | 1 | 526 | 0 | 1051 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043656.01.T01 | Q9SA38 | 47.222 | 504 | 253 | 5 | 17 | 514 | 16 | 512 | 4.11E-173 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043656.01.T01 | MTR_8g039190 | 97.170 | 530 | 11 | 1 | 1 | 530 | 1 | 526 | 0.0 | 1048 |
| MsG0880043656.01.T01 | MTR_8g039070 | 89.434 | 530 | 16 | 3 | 1 | 530 | 1 | 490 | 0.0 | 944 |
| MsG0880043656.01.T01 | MTR_5g080050 | 87.452 | 526 | 62 | 4 | 1 | 525 | 1 | 523 | 0.0 | 903 |
| MsG0880043656.01.T01 | MTR_5g082760 | 84.774 | 532 | 72 | 1 | 1 | 523 | 1 | 532 | 0.0 | 896 |
| MsG0880043656.01.T01 | MTR_4g030040 | 69.307 | 505 | 149 | 2 | 8 | 512 | 6 | 504 | 0.0 | 716 |
| MsG0880043656.01.T01 | MTR_4g030040 | 69.661 | 501 | 146 | 2 | 12 | 512 | 11 | 505 | 0.0 | 715 |
| MsG0880043656.01.T01 | MTR_4g030210 | 70.495 | 505 | 140 | 3 | 8 | 512 | 14 | 509 | 0.0 | 714 |
| MsG0880043656.01.T01 | MTR_8g447340 | 43.385 | 514 | 280 | 6 | 7 | 512 | 8 | 518 | 5.02e-158 | 461 |
| MsG0880043656.01.T01 | MTR_2g081930 | 31.721 | 517 | 324 | 10 | 10 | 509 | 19 | 523 | 3.28e-77 | 253 |
| MsG0880043656.01.T01 | MTR_4g120720 | 39.016 | 305 | 147 | 5 | 82 | 382 | 2 | 271 | 3.43e-65 | 213 |
| MsG0880043656.01.T01 | MTR_2g081950 | 30.102 | 392 | 245 | 7 | 133 | 504 | 18 | 400 | 8.02e-47 | 169 |
| MsG0880043656.01.T01 | MTR_4g081490 | 29.412 | 391 | 252 | 7 | 134 | 512 | 66 | 444 | 6.02e-46 | 167 |
| MsG0880043656.01.T01 | MTR_2g081960 | 31.250 | 112 | 74 | 1 | 27 | 138 | 32 | 140 | 4.94e-16 | 75.9 |
| MsG0880043656.01.T01 | MTR_4g081480 | 27.344 | 128 | 89 | 2 | 9 | 135 | 21 | 145 | 4.16e-13 | 67.4 |
| MsG0880043656.01.T01 | MTR_2g020710 | 24.857 | 350 | 212 | 14 | 129 | 450 | 97 | 423 | 2.91e-11 | 66.2 |
| MsG0880043656.01.T01 | MTR_2g020710 | 25.833 | 240 | 154 | 8 | 129 | 366 | 97 | 314 | 8.31e-11 | 64.3 |
| MsG0880043656.01.T01 | MTR_2g020710 | 25.833 | 240 | 154 | 8 | 129 | 366 | 97 | 314 | 8.33e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043656.01.T01 | AT1G16390 | 47.222 | 504 | 253 | 5 | 17 | 514 | 16 | 512 | 4.19e-174 | 501 |
| MsG0880043656.01.T01 | AT1G79360 | 47.835 | 508 | 252 | 8 | 25 | 521 | 19 | 524 | 4.73e-171 | 494 |
| MsG0880043656.01.T01 | AT1G16370 | 43.478 | 506 | 270 | 9 | 17 | 516 | 21 | 516 | 8.91e-146 | 429 |
| MsG0880043656.01.T01 | AT1G79410 | 43.026 | 509 | 275 | 8 | 12 | 515 | 11 | 509 | 6.40e-144 | 424 |
| MsG0880043656.01.T01 | AT1G73220 | 38.417 | 518 | 289 | 9 | 11 | 512 | 26 | 529 | 5.18e-106 | 328 |
| MsG0880043656.01.T01 | AT3G20660 | 29.800 | 500 | 337 | 7 | 17 | 512 | 25 | 514 | 5.26e-70 | 233 |
| MsG0880043656.01.T01 | AT3G51490 | 30.435 | 184 | 122 | 3 | 119 | 298 | 44 | 225 | 7.45e-14 | 75.1 |
| MsG0880043656.01.T01 | AT3G51490 | 30.435 | 184 | 122 | 3 | 119 | 298 | 44 | 225 | 7.50e-14 | 75.1 |
| MsG0880043656.01.T01 | AT3G51490 | 30.286 | 175 | 116 | 3 | 128 | 298 | 3 | 175 | 1.57e-13 | 73.9 |
| MsG0880043656.01.T01 | AT1G20840 | 26.250 | 160 | 107 | 2 | 146 | 298 | 68 | 223 | 1.27e-11 | 67.8 |
| MsG0880043656.01.T01 | AT1G20840 | 26.250 | 160 | 107 | 2 | 146 | 298 | 68 | 223 | 1.27e-11 | 67.8 |
Find 76 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAATCTTCTTTCTTTAT+AGG | 0.092456 | 8:-28516170 | MsG0880043656.01.T01:CDS |
| TGAAATTCTTGATTGGTTTC+TGG | 0.098184 | 8:-28516004 | MsG0880043656.01.T01:CDS |
| CCATTAGCCGTTGGAAATTT+AGG | 0.144686 | 8:-28515498 | MsG0880043656.01.T01:CDS |
| TTCTTTATAGGTTGTCTTCT+TGG | 0.148431 | 8:-28516158 | MsG0880043656.01.T01:CDS |
| GGACTTGGAATGGTTTATTT+TGG | 0.195131 | 8:-28515525 | MsG0880043656.01.T01:CDS |
| ATGATAGCTGTTATGATTCT+TGG | 0.200882 | 8:-28515552 | MsG0880043656.01.T01:CDS |
| GTGTTTGTGCAGTGCCATTT+TGG | 0.231738 | 8:+28516332 | None:intergenic |
| ATTTCATCCCATGACAAAAT+TGG | 0.236335 | 8:+28516473 | None:intergenic |
| ACACTGATAATTACCCAAAA+TGG | 0.257079 | 8:-28516346 | MsG0880043656.01.T01:CDS |
| TTGTGTAGCAACATATTTCT+TGG | 0.258918 | 8:-28515424 | MsG0880043656.01.T01:CDS |
| TTGTGTCATGTGTGCTGTTT+TGG | 0.265365 | 8:-28515346 | MsG0880043656.01.T01:CDS |
| GTAATCTCCCAAGATCTTCT+TGG | 0.285579 | 8:-28516271 | MsG0880043656.01.T01:CDS |
| TCAATATTGGAATGAGATTC+AGG | 0.293238 | 8:+28516509 | None:intergenic |
| ATTTACTCATATGGTGTGTT+TGG | 0.306270 | 8:-28515120 | MsG0880043656.01.T01:CDS |
| CCTAAATTTCCAACGGCTAA+TGG | 0.311063 | 8:+28515498 | None:intergenic |
| CCTCCCCGCAGATATCAAAA+AGG | 0.313674 | 8:+28515152 | None:intergenic |
| CCTGGAAATCTCTTTACATT+TGG | 0.316261 | 8:-28515833 | MsG0880043656.01.T01:CDS |
| TCCCAAGATCTTCTTGGTCT+TGG | 0.317474 | 8:-28516265 | MsG0880043656.01.T01:CDS |
| GCATTAGCTGATTCATCTAT+TGG | 0.326922 | 8:-28516119 | MsG0880043656.01.T01:CDS |
| ATATTAATCGAAACTCTTCC+TGG | 0.327155 | 8:-28515851 | MsG0880043656.01.T01:CDS |
| GCTGTTATGATTCTTGGAAT+TGG | 0.328512 | 8:-28515546 | MsG0880043656.01.T01:CDS |
| TTTCAACTTTACTCATCAAT+AGG | 0.345221 | 8:-28515609 | MsG0880043656.01.T01:CDS |
| GGTTTCTGGCGTTCGTCCAT+TGG | 0.353273 | 8:-28515990 | MsG0880043656.01.T01:CDS |
| GAGAATTATTTCATAAAAGA+TGG | 0.364760 | 8:-28515587 | MsG0880043656.01.T01:CDS |
| CAAACACAATTATTTCTCAT+TGG | 0.376010 | 8:-28516229 | MsG0880043656.01.T01:CDS |
| CCCAAGATCTTCTTGGTCTT+GGG | 0.376081 | 8:-28516264 | MsG0880043656.01.T01:CDS |
| CCAAATGTAAAGAGATTTCC+AGG | 0.384659 | 8:+28515833 | None:intergenic |
| TCGATTAATATAAGCGAAAC+CGG | 0.387576 | 8:+28515863 | None:intergenic |
| ATGAATCAAAATGAGAAAAC+AGG | 0.415148 | 8:-28514982 | MsG0880043656.01.T01:CDS |
| ATAGAAAACACAAGAATTGA+AGG | 0.420097 | 8:+28515384 | None:intergenic |
| GTTTCTGGCGTTCGTCCATT+GGG | 0.428265 | 8:-28515989 | MsG0880043656.01.T01:CDS |
| GTGAGACAAGCGATTGTGTT+TGG | 0.433167 | 8:-28515189 | MsG0880043656.01.T01:CDS |
| TCCCAAGACCAAGAAGATCT+TGG | 0.437312 | 8:+28516263 | None:intergenic |
| TCCGCCTTGAAATTCTTGAT+TGG | 0.439284 | 8:-28516011 | MsG0880043656.01.T01:CDS |
| TAAATTAACGCTATCATCTT+CGG | 0.442791 | 8:+28515677 | None:intergenic |
| TAGAGTACCAGCAGCTAAAG+TGG | 0.460052 | 8:-28515319 | MsG0880043656.01.T01:CDS |
| TTTAGGATTCAACATTTACT+TGG | 0.463806 | 8:-28515481 | MsG0880043656.01.T01:CDS |
| ATGATTCTTGGAATTGGACT+TGG | 0.469021 | 8:-28515540 | MsG0880043656.01.T01:CDS |
| CCCAAGACCAAGAAGATCTT+GGG | 0.475977 | 8:+28516264 | None:intergenic |
| TGAGAAATAATTGTGTTTGA+AGG | 0.476778 | 8:+28516233 | None:intergenic |
| CTGAGAAAGTTAGCGCTGAA+TGG | 0.482723 | 8:-28515944 | MsG0880043656.01.T01:CDS |
| ATGACAGAGTAACATATTGC+AGG | 0.490997 | 8:+28515801 | None:intergenic |
| AGAACAATCCCCATAGTCTC+TGG | 0.502199 | 8:+28515057 | None:intergenic |
| ATTCAACATTTACTTGGCTG+TGG | 0.508261 | 8:-28515475 | MsG0880043656.01.T01:CDS |
| GAAACCAATCAAGAATTTCA+AGG | 0.521037 | 8:+28516007 | None:intergenic |
| AGAATTATTTCATAAAAGAT+GGG | 0.523007 | 8:-28515586 | MsG0880043656.01.T01:CDS |
| TCTTGGAATTGGACTTGGAA+TGG | 0.524447 | 8:-28515535 | MsG0880043656.01.T01:CDS |
| AAATATGTTGCTACACAAGA+AGG | 0.528534 | 8:+28515429 | None:intergenic |
| TTTGGTATGCCATTAGCCGT+TGG | 0.531240 | 8:-28515507 | MsG0880043656.01.T01:CDS |
| GCTAACACCACTTTAGCTGC+TGG | 0.539903 | 8:+28515312 | None:intergenic |
| GAGAAATAATTGTGTTTGAA+GGG | 0.547820 | 8:+28516234 | None:intergenic |
| GATTGTTCTTTGTGATACAA+TGG | 0.548217 | 8:-28515043 | MsG0880043656.01.T01:CDS |
| ATGGGGTACATGTCTTTACC+CGG | 0.552475 | 8:-28515882 | MsG0880043656.01.T01:CDS |
| GCTGAATGGCGGTTTAGAGT+TGG | 0.556204 | 8:-28515930 | MsG0880043656.01.T01:CDS |
| CTCAATGTCAATAACCTCCA+TGG | 0.558068 | 8:-28516066 | MsG0880043656.01.T01:CDS |
| TGTGCTAGCACATTCATCAC+TGG | 0.561957 | 8:-28516197 | MsG0880043656.01.T01:CDS |
| AGCTAAAGTGGTGTTAGCAA+TGG | 0.576134 | 8:-28515307 | MsG0880043656.01.T01:CDS |
| TCTTTGTAACCGAGTCGCCT+AGG | 0.585004 | 8:-28515770 | MsG0880043656.01.T01:CDS |
| GTTGAATCCTAAATTTCCAA+CGG | 0.588847 | 8:+28515491 | None:intergenic |
| AACAAGCCACCTAGGCGACT+CGG | 0.591181 | 8:+28515761 | None:intergenic |
| CCTAGGTGGCTTGTTATGCA+AGG | 0.598767 | 8:-28515753 | MsG0880043656.01.T01:CDS |
| AACAAGAACACATGTCCCAA+TGG | 0.601485 | 8:+28515974 | None:intergenic |
| CGATTAATATAAGCGAAACC+GGG | 0.603257 | 8:+28515864 | None:intergenic |
| GGTTGAAAAGATTATGACCA+TGG | 0.610797 | 8:+28516049 | None:intergenic |
| GGCGGAGTAAATCCAAACAT+TGG | 0.614089 | 8:+28516028 | None:intergenic |
| ATATTAGCAATAACAATGGA+AGG | 0.621885 | 8:-28516551 | None:intergenic |
| GAGGAACACAACAACGTCGT+TGG | 0.627045 | 8:-28515211 | MsG0880043656.01.T01:CDS |
| CCTATAAAGAAAGAAGATTG+TGG | 0.630632 | 8:+28516170 | None:intergenic |
| GTTGTGTTCCTCACACATGT+CGG | 0.637523 | 8:+28515222 | None:intergenic |
| CCTTGCATAACAAGCCACCT+AGG | 0.639898 | 8:+28515753 | None:intergenic |
| AGTTGTTTCCGACATGTGTG+AGG | 0.640373 | 8:-28515230 | MsG0880043656.01.T01:CDS |
| TGGGAGATTACAAATATCAG+AGG | 0.653228 | 8:+28516283 | None:intergenic |
| AGAAAGTTAGCGCTGAATGG+CGG | 0.661481 | 8:-28515941 | MsG0880043656.01.T01:CDS |
| TTGTAACCGAGTCGCCTAGG+TGG | 0.677877 | 8:-28515767 | MsG0880043656.01.T01:CDS |
| TGAAAAGATTATGACCATGG+AGG | 0.709434 | 8:+28516052 | None:intergenic |
| ACCAATCAAGAATTTCAAGG+CGG | 0.740665 | 8:+28516010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGTTTACTAAATTTT+GGG | - | Chr8:28515057-28515076 | MsG0880043656.01.T01:CDS | 10.0% |
| !! | AAAAACAATATTTACTCATA+TGG | - | Chr8:28516373-28516392 | MsG0880043656.01.T01:CDS | 15.0% |
| !! | AGAATTATTTCATAAAAGAT+GGG | - | Chr8:28515916-28515935 | MsG0880043656.01.T01:CDS | 15.0% |
| !!! | AAAAATGAAACTTTTTCTTT+TGG | + | Chr8:28515875-28515894 | None:intergenic | 15.0% |
| !!! | AAATTTTGAAAATGCTTAAA+AGG | - | Chr8:28515783-28515802 | MsG0880043656.01.T01:CDS | 15.0% |
| !!! | AATTTTGAAAATGCTTAAAA+GGG | - | Chr8:28515784-28515803 | MsG0880043656.01.T01:CDS | 15.0% |
| !!! | GAAAAAAGTTTACTAAATTT+TGG | - | Chr8:28515056-28515075 | MsG0880043656.01.T01:CDS | 15.0% |
| !! | CAAAAAGAACAATGTAAAAT+TGG | + | Chr8:28516425-28516444 | None:intergenic | 20.0% |
| !! | GAGAATTATTTCATAAAAGA+TGG | - | Chr8:28515915-28515934 | MsG0880043656.01.T01:CDS | 20.0% |
| ! | ATAGAAAACACAAGAATTGA+AGG | + | Chr8:28516121-28516140 | None:intergenic | 25.0% |
| ! | ATGAATCAAAATGAGAAAAC+AGG | - | Chr8:28516520-28516539 | MsG0880043656.01.T01:CDS | 25.0% |
| ! | GAGAAATAATTGTGTTTGAA+GGG | + | Chr8:28515271-28515290 | None:intergenic | 25.0% |
| ! | TAAATTAACGCTATCATCTT+CGG | + | Chr8:28515828-28515847 | None:intergenic | 25.0% |
| ! | TGAGAAATAATTGTGTTTGA+AGG | + | Chr8:28515272-28515291 | None:intergenic | 25.0% |
| ! | TTTCAACTTTACTCATCAAT+AGG | - | Chr8:28515893-28515912 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | AAAAGAAACCAATTTTGTCA+TGG | - | Chr8:28515021-28515040 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | AAAGAAACCAATTTTGTCAT+GGG | - | Chr8:28515022-28515041 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | AAAGTTTACTAAATTTTGGG+TGG | - | Chr8:28515060-28515079 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | AGTATTTTACTTTCACAATG+GGG | - | Chr8:28515603-28515622 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | ATTCTTGTGTTTTCTATCTT+AGG | - | Chr8:28516124-28516143 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | CAAACACAATTATTTCTCAT+TGG | - | Chr8:28515273-28515292 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | GAGTATTTTACTTTCACAAT+GGG | - | Chr8:28515602-28515621 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | TAATCTTTTCAACCAATGTT+TGG | - | Chr8:28515462-28515481 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | TGAGTATTTTACTTTCACAA+TGG | - | Chr8:28515601-28515620 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | TTTAGGATTCAACATTTACT+TGG | - | Chr8:28516021-28516040 | MsG0880043656.01.T01:CDS | 25.0% |
| !! | TTTCTTTTCTTGCTCAATAT+TGG | + | Chr8:28515009-28515028 | None:intergenic | 25.0% |
| !!! | AATGAAACTTTTTCTTTTGG+CGG | + | Chr8:28515872-28515891 | None:intergenic | 25.0% |
| !!! | TGTTTTCTCATTTTGATTCA+TGG | + | Chr8:28516521-28516540 | None:intergenic | 25.0% |
| AAATATGTTGCTACACAAGA+AGG | + | Chr8:28516076-28516095 | None:intergenic | 30.0% | |
| ACACTGATAATTACCCAAAA+TGG | - | Chr8:28515156-28515175 | MsG0880043656.01.T01:CDS | 30.0% | |
| ATATTAATCGAAACTCTTCC+TGG | - | Chr8:28515651-28515670 | MsG0880043656.01.T01:CDS | 30.0% | |
| ATGATAGCTGTTATGATTCT+TGG | - | Chr8:28515950-28515969 | MsG0880043656.01.T01:CDS | 30.0% | |
| ATTTACTCATATGGTGTGTT+TGG | - | Chr8:28516382-28516401 | MsG0880043656.01.T01:CDS | 30.0% | |
| ATTTCATCCCATGACAAAAT+TGG | + | Chr8:28515032-28515051 | None:intergenic | 30.0% | |
| CCACAATCTTCTTTCTTTAT+AGG | - | Chr8:28515332-28515351 | MsG0880043656.01.T01:CDS | 30.0% | |
| CCTATAAAGAAAGAAGATTG+TGG | + | Chr8:28515335-28515354 | None:intergenic | 30.0% | |
| GAAACCAATCAAGAATTTCA+AGG | + | Chr8:28515498-28515517 | None:intergenic | 30.0% | |
| GATTGTTCTTTGTGATACAA+TGG | - | Chr8:28516459-28516478 | MsG0880043656.01.T01:CDS | 30.0% | |
| GTTGAATCCTAAATTTCCAA+CGG | + | Chr8:28516014-28516033 | None:intergenic | 30.0% | |
| TCAATATTGGAATGAGATTC+AGG | + | Chr8:28514996-28515015 | None:intergenic | 30.0% | |
| TCGATTAATATAAGCGAAAC+CGG | + | Chr8:28515642-28515661 | None:intergenic | 30.0% | |
| TTCTTTATAGGTTGTCTTCT+TGG | - | Chr8:28515344-28515363 | MsG0880043656.01.T01:CDS | 30.0% | |
| TTGTGTAGCAACATATTTCT+TGG | - | Chr8:28516078-28516097 | MsG0880043656.01.T01:CDS | 30.0% | |
| ! | GAATTGAAGGTTTTCTTCTA+AGG | + | Chr8:28516108-28516127 | None:intergenic | 30.0% |
| ! | TTAGCAATGGTTGCATTTTT+CGG | - | Chr8:28516208-28516227 | MsG0880043656.01.T01:CDS | 30.0% |
| !! | TGAAATTCTTGATTGGTTTC+TGG | - | Chr8:28515498-28515517 | MsG0880043656.01.T01:CDS | 30.0% |
| !! | TTTACTAAATTTTGGGTGGA+TGG | - | Chr8:28515064-28515083 | MsG0880043656.01.T01:CDS | 30.0% |
| ACCAATCAAGAATTTCAAGG+CGG | + | Chr8:28515495-28515514 | None:intergenic | 35.0% | |
| ATGACAGAGTAACATATTGC+AGG | + | Chr8:28515704-28515723 | None:intergenic | 35.0% | |
| ATGATTCTTGGAATTGGACT+TGG | - | Chr8:28515962-28515981 | MsG0880043656.01.T01:CDS | 35.0% | |
| ATTCAACATTTACTTGGCTG+TGG | - | Chr8:28516027-28516046 | MsG0880043656.01.T01:CDS | 35.0% | |
| CCAAATGTAAAGAGATTTCC+AGG | + | Chr8:28515672-28515691 | None:intergenic | 35.0% | |
| CCTGGAAATCTCTTTACATT+TGG | - | Chr8:28515669-28515688 | MsG0880043656.01.T01:CDS | 35.0% | |
| CGATTAATATAAGCGAAACC+GGG | + | Chr8:28515641-28515660 | None:intergenic | 35.0% | |
| GCTGTTATGATTCTTGGAAT+TGG | - | Chr8:28515956-28515975 | MsG0880043656.01.T01:CDS | 35.0% | |
| GGTTGAAAAGATTATGACCA+TGG | + | Chr8:28515456-28515475 | None:intergenic | 35.0% | |
| TGAAAAGATTATGACCATGG+AGG | + | Chr8:28515453-28515472 | None:intergenic | 35.0% | |
| TGGGAGATTACAAATATCAG+AGG | + | Chr8:28515222-28515241 | None:intergenic | 35.0% | |
| ! | CTTGTGTTTTCTATCTTAGG+TGG | - | Chr8:28516127-28516146 | MsG0880043656.01.T01:CDS | 35.0% |
| ! | GCATTAGCTGATTCATCTAT+TGG | - | Chr8:28515383-28515402 | MsG0880043656.01.T01:CDS | 35.0% |
| ! | GGACTTGGAATGGTTTATTT+TGG | - | Chr8:28515977-28515996 | MsG0880043656.01.T01:CDS | 35.0% |
| ! | TTCTTTTTGCCAGAGACTAT+GGG | - | Chr8:28516436-28516455 | MsG0880043656.01.T01:CDS | 35.0% |
| ! | TTTTCTTTTGGCGGAAGTTT+TGG | + | Chr8:28515863-28515882 | None:intergenic | 35.0% |
| !!! | TGTGGTTTTTAGTGCTTCTA+TGG | - | Chr8:28516045-28516064 | MsG0880043656.01.T01:CDS | 35.0% |
| AACAAGAACACATGTCCCAA+TGG | + | Chr8:28515531-28515550 | None:intergenic | 40.0% | |
| CCATTAGCCGTTGGAAATTT+AGG | - | Chr8:28516004-28516023 | MsG0880043656.01.T01:CDS | 40.0% | |
| CCTAAATTTCCAACGGCTAA+TGG | + | Chr8:28516007-28516026 | None:intergenic | 40.0% | |
| CTCAATGTCAATAACCTCCA+TGG | - | Chr8:28515436-28515455 | MsG0880043656.01.T01:CDS | 40.0% | |
| GTAATCTCCCAAGATCTTCT+TGG | - | Chr8:28515231-28515250 | MsG0880043656.01.T01:CDS | 40.0% | |
| TCCGCCTTGAAATTCTTGAT+TGG | - | Chr8:28515491-28515510 | MsG0880043656.01.T01:CDS | 40.0% | |
| TCTTGGAATTGGACTTGGAA+TGG | - | Chr8:28515967-28515986 | MsG0880043656.01.T01:CDS | 40.0% | |
| ! | AGCTAAAGTGGTGTTAGCAA+TGG | - | Chr8:28516195-28516214 | MsG0880043656.01.T01:CDS | 40.0% |
| ! | CTGTCCCTTTTTGATATCTG+CGG | - | Chr8:28516345-28516364 | MsG0880043656.01.T01:CDS | 40.0% |
| ! | GTTCTTTTTGCCAGAGACTA+TGG | - | Chr8:28516435-28516454 | MsG0880043656.01.T01:CDS | 40.0% |
| ! | TCTTTTTGCCAGAGACTATG+GGG | - | Chr8:28516437-28516456 | MsG0880043656.01.T01:CDS | 40.0% |
| ! | TGTCCCTTTTTGATATCTGC+GGG | - | Chr8:28516346-28516365 | MsG0880043656.01.T01:CDS | 40.0% |
| !!! | TGTTTGTGCAGTGCCATTTT+GGG | + | Chr8:28515172-28515191 | None:intergenic | 40.0% |
| !!! | TTGTGTCATGTGTGCTGTTT+TGG | - | Chr8:28516156-28516175 | MsG0880043656.01.T01:CDS | 40.0% |
| AGAACAATCCCCATAGTCTC+TGG | + | Chr8:28516448-28516467 | None:intergenic | 45.0% | |
| ATGGGGTACATGTCTTTACC+CGG | - | Chr8:28515620-28515639 | MsG0880043656.01.T01:CDS | 45.0% | |
| CCCAAGACCAAGAAGATCTT+GGG | + | Chr8:28515241-28515260 | None:intergenic | 45.0% | |
| CTCCCCGCAGATATCAAAAA+GGG | + | Chr8:28516352-28516371 | None:intergenic | 45.0% | |
| GGCGGAGTAAATCCAAACAT+TGG | + | Chr8:28515477-28515496 | None:intergenic | 45.0% | |
| GTGAGACAAGCGATTGTGTT+TGG | - | Chr8:28516313-28516332 | MsG0880043656.01.T01:CDS | 45.0% | |
| GTTGTGTTCCTCACACATGT+CGG | + | Chr8:28516283-28516302 | None:intergenic | 45.0% | |
| TCCCAAGACCAAGAAGATCT+TGG | + | Chr8:28515242-28515261 | None:intergenic | 45.0% | |
| TCCCAAGATCTTCTTGGTCT+TGG | - | Chr8:28515237-28515256 | MsG0880043656.01.T01:CDS | 45.0% | |
| TGTGCTAGCACATTCATCAC+TGG | - | Chr8:28515305-28515324 | MsG0880043656.01.T01:CDS | 45.0% | |
| TTTGGTATGCCATTAGCCGT+TGG | - | Chr8:28515995-28516014 | MsG0880043656.01.T01:CDS | 45.0% | |
| ! | AGAAAGTTAGCGCTGAATGG+CGG | - | Chr8:28515561-28515580 | MsG0880043656.01.T01:CDS | 45.0% |
| ! | AGTTGTTTCCGACATGTGTG+AGG | - | Chr8:28516272-28516291 | MsG0880043656.01.T01:CDS | 45.0% |
| ! | CCCAAGATCTTCTTGGTCTT+GGG | - | Chr8:28515238-28515257 | MsG0880043656.01.T01:CDS | 45.0% |
| ! | CTGAGAAAGTTAGCGCTGAA+TGG | - | Chr8:28515558-28515577 | MsG0880043656.01.T01:CDS | 45.0% |
| ! | GTCCCTTTTTGATATCTGCG+GGG | - | Chr8:28516347-28516366 | MsG0880043656.01.T01:CDS | 45.0% |
| ! | TAGAGTACCAGCAGCTAAAG+TGG | - | Chr8:28516183-28516202 | MsG0880043656.01.T01:CDS | 45.0% |
| !! | TGCATTTTTCGGCGCTTGTA+CGG | - | Chr8:28516219-28516238 | MsG0880043656.01.T01:CDS | 45.0% |
| !!! | GTGTTTGTGCAGTGCCATTT+TGG | + | Chr8:28515173-28515192 | None:intergenic | 45.0% |
| CCTCCCCGCAGATATCAAAA+AGG | + | Chr8:28516353-28516372 | None:intergenic | 50.0% | |
| CCTTGCATAACAAGCCACCT+AGG | + | Chr8:28515752-28515771 | None:intergenic | 50.0% | |
| GAGGAACACAACAACGTCGT+TGG | - | Chr8:28516291-28516310 | MsG0880043656.01.T01:CDS | 50.0% | |
| GCTAACACCACTTTAGCTGC+TGG | + | Chr8:28516193-28516212 | None:intergenic | 50.0% | |
| TCTTTGTAACCGAGTCGCCT+AGG | - | Chr8:28515732-28515751 | MsG0880043656.01.T01:CDS | 50.0% | |
| ! | CCTTTTTGATATCTGCGGGG+AGG | - | Chr8:28516350-28516369 | MsG0880043656.01.T01:CDS | 50.0% |
| ! | GCTGAATGGCGGTTTAGAGT+TGG | - | Chr8:28515572-28515591 | MsG0880043656.01.T01:CDS | 50.0% |
| !! | CCTAGGTGGCTTGTTATGCA+AGG | - | Chr8:28515749-28515768 | MsG0880043656.01.T01:CDS | 50.0% |
| !! | GTTTCTGGCGTTCGTCCATT+GGG | - | Chr8:28515513-28515532 | MsG0880043656.01.T01:CDS | 50.0% |
| AACAAGCCACCTAGGCGACT+CGG | + | Chr8:28515744-28515763 | None:intergenic | 55.0% | |
| TTGTAACCGAGTCGCCTAGG+TGG | - | Chr8:28515735-28515754 | MsG0880043656.01.T01:CDS | 55.0% | |
| !! | GGTTTCTGGCGTTCGTCCAT+TGG | - | Chr8:28515512-28515531 | MsG0880043656.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 28514966 | 28516558 | 28514966 | ID=MsG0880043656.01;Name=MsG0880043656.01 |
| Chr8 | mRNA | 28514966 | 28516558 | 28514966 | ID=MsG0880043656.01.T01;Parent=MsG0880043656.01;Name=MsG0880043656.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|530 |
| Chr8 | exon | 28514966 | 28516558 | 28514966 | ID=MsG0880043656.01.T01:exon:4933;Parent=MsG0880043656.01.T01 |
| Chr8 | CDS | 28514966 | 28516558 | 28514966 | ID=MsG0880043656.01.T01:cds;Parent=MsG0880043656.01.T01 |
| Gene Sequence |
| Protein sequence |
