AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133130 MtrunA17_Chr1g0202421 86.145 332 15 5 1 320 1 313 0.0 552
Msa0133130 MtrunA17_Chr8g0387621 35.102 245 99 8 100 290 98 336 1.70e-25 104
Msa0133130 MtrunA17_Chr5g0397131 38.767 227 89 12 104 295 159 370 2.79e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133130 AT5G52870.1 33.442 308 149 12 1 294 1 266 5.74e-29 114
Msa0133130 AT5G52870.2 33.442 308 149 12 1 294 1 266 6.06e-29 113

Find 70 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAACTCGCTCTGTTT+TGG 0.159958 1_3:+64432167 None:intergenic
TAGGGGTGATGATTAGTAAT+AGG 0.303727 1_3:-64431561 Msa0133130:three_prime_UTR
CTTTAAACTTCCTCAAGTTC+TGG 0.310344 1_3:-64432728 Msa0133130:CDS
CACCGGCGGTTGGCTCTTTG+AGG 0.337288 1_3:-64432023 Msa0133130:CDS
GAAACTTTGGTAGCAAAATT+CGG 0.358487 1_3:-64432209 Msa0133130:CDS
AATGAAATGAAATTAGATTA+GGG 0.364082 1_3:-64431579 Msa0133130:three_prime_UTR
GATTAAGCCTCTTTATGTTA+AGG 0.375290 1_3:-64432118 Msa0133130:CDS
ATAGAGAGAGAATAGTGTTT+AGG 0.382447 1_3:+64432777 None:intergenic
AAATGAAATGAAATTAGATT+AGG 0.383083 1_3:-64431580 Msa0133130:three_prime_UTR
TTTGTTGTCGAAATCATTCA+TGG 0.384507 1_3:+64432605 None:intergenic
TTCGAAACCTTAACATAAAG+AGG 0.384723 1_3:+64432111 None:intergenic
GAAAGTGGTGACGAAGCATT+TGG 0.391796 1_3:-64432001 Msa0133130:CDS
TTGGACATGTGTGTCGTCAT+TGG 0.408325 1_3:+64432581 None:intergenic
TTTCATTACTCTTTCTATGC+TGG 0.414240 1_3:+64431622 None:intergenic
ATGGATGTTGTTGGTGGTGA+TGG 0.423562 1_3:-64431715 Msa0133130:CDS
GAGCTTGTTCTCCGGCGAAC+AGG 0.426734 1_3:-64431948 Msa0133130:CDS
TTCAGAAAACAGAGAAGAAC+TGG 0.432309 1_3:-64432369 Msa0133130:CDS
CTCTTAACTCTTCCATTCCA+TGG 0.434217 1_3:-64432754 Msa0133130:exon
GGTAGCAAAATTCGGAATCA+AGG 0.437082 1_3:-64432201 Msa0133130:CDS
GATTCTTCAATGGATGTTGT+TGG 0.446904 1_3:-64431724 Msa0133130:CDS
AGGTCGTCGGGTACGGTGGC+CGG 0.454518 1_3:-64431970 Msa0133130:CDS
GAGAACAGCACAAGAAACTT+TGG 0.457374 1_3:-64432222 Msa0133130:CDS
TGCTGATCTTAGAAGTGAAA+TGG 0.459585 1_3:+64432413 None:intergenic
TTCGAAGAGGTATGGTGATA+AGG 0.470661 1_3:-64432094 Msa0133130:CDS
TAAGAGTAGGTCGTCGGGTA+CGG 0.475412 1_3:-64431977 Msa0133130:CDS
ACTCTTCCTTTGTTGTGTTG+TGG 0.477112 1_3:-64431450 Msa0133130:three_prime_UTR
CCGTCTTCTTCACCGGCGGT+TGG 0.485938 1_3:-64432033 Msa0133130:CDS
GTTAAGGTTTCGAAGAGGTA+TGG 0.486790 1_3:-64432102 Msa0133130:CDS
GGTGATAAGGTGAAATTCTC+CGG 0.500103 1_3:-64432081 Msa0133130:CDS
GATGTCTTTCTTGATGATGT+TGG 0.514432 1_3:-64431651 Msa0133130:three_prime_UTR
TGCTTCGCCGTCTTCTTCAC+CGG 0.518483 1_3:-64432040 Msa0133130:CDS
CTGTTCTCTCTACTAAGCAT+TGG 0.523196 1_3:+64432237 None:intergenic
AAAGTGGTGACGAAGCATTT+GGG 0.526267 1_3:-64432000 Msa0133130:CDS
AAGATGAGGAACAGTGATGT+TGG 0.527025 1_3:+64432686 None:intergenic
GAGGAAGTTTAAAGCATCCA+TGG 0.529668 1_3:+64432737 None:intergenic
AGCTACCGTCATCCCCTCGC+CGG 0.534216 1_3:+64432062 None:intergenic
CAAAACAGAGCGAGTTTCAA+AGG 0.536455 1_3:-64432166 Msa0133130:CDS
TGTTGTTCTTCCAGAACTTG+AGG 0.537675 1_3:+64432718 None:intergenic
GGTTGGCTCTTTGAGGAAAG+TGG 0.542571 1_3:-64432016 Msa0133130:CDS
TTGGGTAAGAGTAGGTCGTC+GGG 0.544095 1_3:-64431982 Msa0133130:CDS
AGTTTAAAGCATCCATGGAA+TGG 0.546782 1_3:+64432742 None:intergenic
AAGGTGAAATTCTCCGGCGA+GGG 0.550532 1_3:-64432075 Msa0133130:CDS
AAGGTAAAGATTCTGAAACT+TGG 0.555444 1_3:+64432390 None:intergenic
AGAAGTGAAATGGGTGATTG+TGG 0.566819 1_3:+64432423 None:intergenic
GGTGGCCGGAGCTTGTTCTC+CGG 0.566890 1_3:-64431956 Msa0133130:CDS
ATTCTCCGGCGAGGGGATGA+CGG 0.568736 1_3:-64432067 Msa0133130:CDS
GCTGATCTTAGAAGTGAAAT+GGG 0.571175 1_3:+64432414 None:intergenic
TTCCTCAAAGAGCCAACCGC+CGG 0.578853 1_3:+64432021 None:intergenic
CGAAGCATTTGGGTAAGAGT+AGG 0.585768 1_3:-64431990 Msa0133130:CDS
TTTGGGTAAGAGTAGGTCGT+CGG 0.592489 1_3:-64431983 Msa0133130:CDS
ACGCTGTTGCAGCAACATGA+TGG 0.598349 1_3:-64431916 Msa0133130:CDS
GTATCATCACTCCTGTTCGC+CGG 0.598908 1_3:+64431937 None:intergenic
TCTTCAATGGATGTTGTTGG+TGG 0.599000 1_3:-64431721 Msa0133130:CDS
CCAACCGCCGGTGAAGAAGA+CGG 0.604637 1_3:+64432033 None:intergenic
GTTCGCCGGAGAACAAGCTC+CGG 0.605965 1_3:+64431951 None:intergenic
GAGTAGGTCGTCGGGTACGG+TGG 0.623063 1_3:-64431974 Msa0133130:CDS
TGATTAGTAATAGGTTTGTG+TGG 0.630154 1_3:-64431552 Msa0133130:three_prime_UTR
ATGAAATGAAATTAGATTAG+GGG 0.635263 1_3:-64431578 Msa0133130:three_prime_UTR
TTCGCCGTCTTCTTCACCGG+CGG 0.640158 1_3:-64432037 Msa0133130:CDS
ATGTATTCGTCTTGTGACTG+TGG 0.645057 1_3:-64431344 None:intergenic
TCTGTTTCTACAACAAGATG+AGG 0.645146 1_3:+64432672 None:intergenic
AAGAGATCCTTCAATTCCAG+AGG 0.646564 1_3:-64431868 Msa0133130:intron
AGGTGAAATTCTCCGGCGAG+GGG 0.653189 1_3:-64432074 Msa0133130:CDS
GAATCAGAAGAAAGAAACCA+AGG 0.653413 1_3:-64432304 Msa0133130:CDS
TAAGGTGAAATTCTCCGGCG+AGG 0.664840 1_3:-64432076 Msa0133130:CDS
ATGAGGAACAGTGATGTTGG+AGG 0.666650 1_3:+64432689 None:intergenic
TTTATGTTAAGGTTTCGAAG+AGG 0.679040 1_3:-64432107 Msa0133130:CDS
AATTCGGAATCAAGGAACAG+AGG 0.681760 1_3:-64432193 Msa0133130:CDS
AAAACTCCACAACACAACAA+AGG 0.684017 1_3:+64431444 None:intergenic
TTAGTAATAGGTTTGTGTGG+TGG 0.725766 1_3:-64431549 Msa0133130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGATTATTTTTGAA+AGG - chr1_3:64432334-64432353 Msa0133130:CDS 10.0%
!!! TAAATATGATTATTTTTGAA+AGG - chr1_3:64432334-64432353 Msa0133130:CDS 10.0%
!! AAATGAAATGAAATTAGATT+AGG - chr1_3:64432558-64432577 Msa0133130:CDS 15.0%
!! AATGAAATGAAATTAGATTA+GGG - chr1_3:64432559-64432578 Msa0133130:CDS 15.0%
!! AAATGAAATGAAATTAGATT+AGG - chr1_3:64432558-64432577 Msa0133130:CDS 15.0%
!! AATGAAATGAAATTAGATTA+GGG - chr1_3:64432559-64432578 Msa0133130:CDS 15.0%
!!! ATAATTTTCAGATTCTTCAA+TGG - chr1_3:64432404-64432423 Msa0133130:CDS 20.0%
!! ATGAAATGAAATTAGATTAG+GGG - chr1_3:64432560-64432579 Msa0133130:CDS 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG - chr1_3:64432640-64432659 Msa0133130:CDS 20.0%
!!! ATAATTTTCAGATTCTTCAA+TGG - chr1_3:64432404-64432423 Msa0133130:CDS 20.0%
!! ATGAAATGAAATTAGATTAG+GGG - chr1_3:64432560-64432579 Msa0133130:CDS 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG - chr1_3:64432640-64432659 Msa0133130:CDS 20.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG + chr1_3:64431637-64431656 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG - chr1_3:64432455-64432474 Msa0133130:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG - chr1_3:64432639-64432658 Msa0133130:CDS 25.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG + chr1_3:64431637-64431656 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG - chr1_3:64432455-64432474 Msa0133130:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG - chr1_3:64432639-64432658 Msa0133130:CDS 25.0%
ATAGAGAGAGAATAGTGTTT+AGG + chr1_3:64431364-64431383 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+TGG + chr1_3:64431536-64431555 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG + chr1_3:64431584-64431603 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG + chr1_3:64431673-64431692 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG + chr1_3:64431751-64431770 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG + chr1_3:64431854-64431873 None:intergenic 30.0%
! GAAACTTTGGTAGCAAAATT+CGG - chr1_3:64431929-64431948 Msa0133130:CDS 30.0%
GATTAAGCCTCTTTATGTTA+AGG - chr1_3:64432020-64432039 Msa0133130:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG + chr1_3:64432030-64432049 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG - chr1_3:64432031-64432050 Msa0133130:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG + chr1_3:64432280-64432299 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG + chr1_3:64432289-64432308 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG + chr1_3:64432519-64432538 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG - chr1_3:64432586-64432605 Msa0133130:CDS 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG - chr1_3:64432652-64432671 Msa0133130:CDS 30.0%
ATAGAGAGAGAATAGTGTTT+AGG + chr1_3:64431364-64431383 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+TGG + chr1_3:64431536-64431555 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG + chr1_3:64431584-64431603 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG + chr1_3:64431673-64431692 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG + chr1_3:64431751-64431770 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG + chr1_3:64431854-64431873 None:intergenic 30.0%
! GAAACTTTGGTAGCAAAATT+CGG - chr1_3:64431929-64431948 Msa0133130:CDS 30.0%
GATTAAGCCTCTTTATGTTA+AGG - chr1_3:64432020-64432039 Msa0133130:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG + chr1_3:64432030-64432049 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG - chr1_3:64432031-64432050 Msa0133130:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG + chr1_3:64432280-64432299 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG + chr1_3:64432289-64432308 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG + chr1_3:64432519-64432538 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG - chr1_3:64432586-64432605 Msa0133130:CDS 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG - chr1_3:64432652-64432671 Msa0133130:CDS 30.0%
! AGTTTAAAGCATCCATGGAA+TGG + chr1_3:64431399-64431418 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG - chr1_3:64431410-64431429 Msa0133130:three_prime_UTR 35.0%
!! TCTGTTTCTACAACAAGATG+AGG + chr1_3:64431469-64431488 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG + chr1_3:64431579-64431598 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG + chr1_3:64431664-64431683 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG + chr1_3:64431697-64431716 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG + chr1_3:64431706-64431725 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG + chr1_3:64431727-64431746 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG + chr1_3:64431728-64431747 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG + chr1_3:64431770-64431789 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG - chr1_3:64431769-64431788 Msa0133130:intron 35.0%
GAATCAGAAGAAAGAAACCA+AGG - chr1_3:64431834-64431853 Msa0133130:intron 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG + chr1_3:64431973-64431992 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG - chr1_3:64432414-64432433 Msa0133130:CDS 35.0%
!! GATGTCTTTCTTGATGATGT+TGG - chr1_3:64432487-64432506 Msa0133130:CDS 35.0%
TAGGGGTGATGATTAGTAAT+AGG - chr1_3:64432577-64432596 Msa0133130:CDS 35.0%
TTAGTAATAGGTTTGTGTGG+TGG - chr1_3:64432589-64432608 Msa0133130:CDS 35.0%
AAAACTCCACAACACAACAA+AGG + chr1_3:64432697-64432716 None:intergenic 35.0%
! AGTTTAAAGCATCCATGGAA+TGG + chr1_3:64431399-64431418 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG - chr1_3:64431410-64431429 Msa0133130:three_prime_UTR 35.0%
!! TCTGTTTCTACAACAAGATG+AGG + chr1_3:64431469-64431488 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG + chr1_3:64431579-64431598 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG + chr1_3:64431664-64431683 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG + chr1_3:64431697-64431716 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG + chr1_3:64431706-64431725 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG + chr1_3:64431727-64431746 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG + chr1_3:64431728-64431747 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG + chr1_3:64431770-64431789 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG - chr1_3:64431769-64431788 Msa0133130:intron 35.0%
GAATCAGAAGAAAGAAACCA+AGG - chr1_3:64431834-64431853 Msa0133130:intron 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG + chr1_3:64431973-64431992 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG - chr1_3:64432414-64432433 Msa0133130:CDS 35.0%
!! GATGTCTTTCTTGATGATGT+TGG - chr1_3:64432487-64432506 Msa0133130:CDS 35.0%
TAGGGGTGATGATTAGTAAT+AGG - chr1_3:64432577-64432596 Msa0133130:CDS 35.0%
TTAGTAATAGGTTTGTGTGG+TGG - chr1_3:64432589-64432608 Msa0133130:CDS 35.0%
AAAACTCCACAACACAACAA+AGG + chr1_3:64432697-64432716 None:intergenic 35.0%
CTCTTAACTCTTCCATTCCA+TGG - chr1_3:64431384-64431403 Msa0133130:three_prime_UTR 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG + chr1_3:64431404-64431423 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG + chr1_3:64431423-64431442 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG + chr1_3:64431455-64431474 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG + chr1_3:64431707-64431726 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG + chr1_3:64431718-64431737 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG + chr1_3:64431904-64431923 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG - chr1_3:64431916-64431935 Msa0133130:CDS 40.0%
GGTAGCAAAATTCGGAATCA+AGG - chr1_3:64431937-64431956 Msa0133130:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG - chr1_3:64431945-64431964 Msa0133130:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG + chr1_3:64431974-64431993 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG - chr1_3:64431972-64431991 Msa0133130:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG - chr1_3:64432036-64432055 Msa0133130:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG - chr1_3:64432044-64432063 Msa0133130:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG - chr1_3:64432057-64432076 Msa0133130:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG - chr1_3:64432138-64432157 Msa0133130:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG - chr1_3:64432270-64432289 Msa0133130:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG - chr1_3:64432417-64432436 Msa0133130:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG - chr1_3:64432688-64432707 Msa0133130:CDS 40.0%
CTCTTAACTCTTCCATTCCA+TGG - chr1_3:64431384-64431403 Msa0133130:three_prime_UTR 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG + chr1_3:64431404-64431423 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG + chr1_3:64431423-64431442 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG + chr1_3:64431455-64431474 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG + chr1_3:64431707-64431726 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG + chr1_3:64431718-64431737 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG + chr1_3:64431904-64431923 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG - chr1_3:64431916-64431935 Msa0133130:CDS 40.0%
GGTAGCAAAATTCGGAATCA+AGG - chr1_3:64431937-64431956 Msa0133130:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG - chr1_3:64431945-64431964 Msa0133130:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG + chr1_3:64431974-64431993 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG - chr1_3:64431972-64431991 Msa0133130:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG - chr1_3:64432036-64432055 Msa0133130:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG - chr1_3:64432044-64432063 Msa0133130:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG - chr1_3:64432057-64432076 Msa0133130:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG - chr1_3:64432138-64432157 Msa0133130:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG - chr1_3:64432270-64432289 Msa0133130:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG - chr1_3:64432417-64432436 Msa0133130:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG - chr1_3:64432688-64432707 Msa0133130:CDS 40.0%
ATGAGGAACAGTGATGTTGG+AGG + chr1_3:64431452-64431471 None:intergenic 45.0%
TTGGACATGTGTGTCGTCAT+TGG + chr1_3:64431560-64431579 None:intergenic 45.0%
! GAAAGTGGTGACGAAGCATT+TGG - chr1_3:64432137-64432156 Msa0133130:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG - chr1_3:64432148-64432167 Msa0133130:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG - chr1_3:64432155-64432174 Msa0133130:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG - chr1_3:64432423-64432442 Msa0133130:CDS 45.0%
ATGAGGAACAGTGATGTTGG+AGG + chr1_3:64431452-64431471 None:intergenic 45.0%
TTGGACATGTGTGTCGTCAT+TGG + chr1_3:64431560-64431579 None:intergenic 45.0%
! GAAAGTGGTGACGAAGCATT+TGG - chr1_3:64432137-64432156 Msa0133130:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG - chr1_3:64432148-64432167 Msa0133130:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG - chr1_3:64432155-64432174 Msa0133130:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG - chr1_3:64432423-64432442 Msa0133130:CDS 45.0%
TAAGGTGAAATTCTCCGGCG+AGG - chr1_3:64432062-64432081 Msa0133130:CDS 50.0%
AAGGTGAAATTCTCCGGCGA+GGG - chr1_3:64432063-64432082 Msa0133130:CDS 50.0%
! GGTTGGCTCTTTGAGGAAAG+TGG - chr1_3:64432122-64432141 Msa0133130:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG - chr1_3:64432156-64432175 Msa0133130:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG - chr1_3:64432161-64432180 Msa0133130:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG + chr1_3:64432204-64432223 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG - chr1_3:64432222-64432241 Msa0133130:CDS 50.0%
TAAGGTGAAATTCTCCGGCG+AGG - chr1_3:64432062-64432081 Msa0133130:CDS 50.0%
AAGGTGAAATTCTCCGGCGA+GGG - chr1_3:64432063-64432082 Msa0133130:CDS 50.0%
! GGTTGGCTCTTTGAGGAAAG+TGG - chr1_3:64432122-64432141 Msa0133130:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG - chr1_3:64432156-64432175 Msa0133130:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG - chr1_3:64432161-64432180 Msa0133130:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG + chr1_3:64432204-64432223 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG - chr1_3:64432222-64432241 Msa0133130:CDS 50.0%
AGGTGAAATTCTCCGGCGAG+GGG - chr1_3:64432064-64432083 Msa0133130:CDS 55.0%
TGCTTCGCCGTCTTCTTCAC+CGG - chr1_3:64432098-64432117 Msa0133130:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG + chr1_3:64432120-64432139 None:intergenic 55.0%
AGGTGAAATTCTCCGGCGAG+GGG - chr1_3:64432064-64432083 Msa0133130:CDS 55.0%
TGCTTCGCCGTCTTCTTCAC+CGG - chr1_3:64432098-64432117 Msa0133130:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG + chr1_3:64432120-64432139 None:intergenic 55.0%
ATTCTCCGGCGAGGGGATGA+CGG - chr1_3:64432071-64432090 Msa0133130:CDS 60.0%
TTCGCCGTCTTCTTCACCGG+CGG - chr1_3:64432101-64432120 Msa0133130:CDS 60.0%
CCAACCGCCGGTGAAGAAGA+CGG + chr1_3:64432108-64432127 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG + chr1_3:64432190-64432209 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG - chr1_3:64432190-64432209 Msa0133130:CDS 60.0%
ATTCTCCGGCGAGGGGATGA+CGG - chr1_3:64432071-64432090 Msa0133130:CDS 60.0%
TTCGCCGTCTTCTTCACCGG+CGG - chr1_3:64432101-64432120 Msa0133130:CDS 60.0%
CCAACCGCCGGTGAAGAAGA+CGG + chr1_3:64432108-64432127 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG + chr1_3:64432190-64432209 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG - chr1_3:64432190-64432209 Msa0133130:CDS 60.0%
AGCTACCGTCATCCCCTCGC+CGG + chr1_3:64432079-64432098 None:intergenic 65.0%
CCGTCTTCTTCACCGGCGGT+TGG - chr1_3:64432105-64432124 Msa0133130:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG - chr1_3:64432115-64432134 Msa0133130:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG - chr1_3:64432164-64432183 Msa0133130:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG - chr1_3:64432182-64432201 Msa0133130:CDS 65.0%
AGCTACCGTCATCCCCTCGC+CGG + chr1_3:64432079-64432098 None:intergenic 65.0%
CCGTCTTCTTCACCGGCGGT+TGG - chr1_3:64432105-64432124 Msa0133130:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG - chr1_3:64432115-64432134 Msa0133130:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG - chr1_3:64432164-64432183 Msa0133130:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG - chr1_3:64432182-64432201 Msa0133130:CDS 65.0%
AGGTCGTCGGGTACGGTGGC+CGG - chr1_3:64432168-64432187 Msa0133130:CDS 70.0%
AGGTCGTCGGGTACGGTGGC+CGG - chr1_3:64432168-64432187 Msa0133130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64431347 64432813 64431347 ID=Msa0133130;Name=Msa0133130
chr1_3 mRNA 64431347 64432813 64431347 ID=Msa0133130-mRNA-1;Parent=Msa0133130;Name=Msa0133130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=56|1|1|1|1|1|2|325|320
chr1_3 exon 64431347 64431745 64431347 ID=Msa0133130-mRNA-1:exon:21671;Parent=Msa0133130-mRNA-1
chr1_3 exon 64431869 64432813 64431869 ID=Msa0133130-mRNA-1:exon:21670;Parent=Msa0133130-mRNA-1
chr1_3 five_prime_UTR 64432758 64432813 64432758 ID=Msa0133130-mRNA-1:five_prime_utr;Parent=Msa0133130-mRNA-1
chr1_3 CDS 64431869 64432757 64431869 ID=Msa0133130-mRNA-1:cds;Parent=Msa0133130-mRNA-1
chr1_3 CDS 64431672 64431745 64431672 ID=Msa0133130-mRNA-1:cds;Parent=Msa0133130-mRNA-1
chr1_3 three_prime_UTR 64431347 64431671 64431347 ID=Msa0133130-mRNA-1:three_prime_utr;Parent=Msa0133130-mRNA-1
Gene Sequence

>Msa0133130

ATGGATGCTTTAAACTTCCTCAAGTTCTGGAAGAACAACACAACAACCTCCAACATCACTGTTCCTCATCTTGTTGTAGAAACAGACAGCGAATCAGACGAAGATGACTCATTCTTCGACTTAGAACTCTCCATGAATGATTTCGACAACAAAACCAATGACGACACACATGTCCAAACCAAAACTCACAAAACAGAAAACATTATCTACGAGAAAACTGAAACTAATGTTCCTCAAAAAACAACACTTCTTATGTCTCCAAACGAACCTATCTCAAAAAGAAAAGTGCTTCCAATTGAACCCATTTCAAAACCACAATCACCCATTTCACTTCTAAGATCAGCACCAAGTTTCAGAATCTTTACCTTCAGAAAACAGAGAAGAACTGGTTCTGAAAAAACAGACGAGTTTAGAAAAACAGAGTGTGAAAAGAATCAGAAGAAAGAAACCAAGGTTTTTTCTGTGAAACTAAATATAGAAGAAGATTTTCATTCTACTCCAATGCTTAGTAGAGAGAACAGCACAAGAAACTTTGGTAGCAAAATTCGGAATCAAGGAACAGAGGAACCCAAAACAGAGCGAGTTTCAAAGGAGATTTTGCAGAAATATTTGAAACTGATTAAGCCTCTTTATGTTAAGGTTTCGAAGAGGTATGGTGATAAGGTGAAATTCTCCGGCGAGGGGATGACGGTAGCTGCTTCGCCGTCTTCTTCACCGGCGGTTGGCTCTTTGAGGAAAGTGGTGACGAAGCATTTGGGTAAGAGTAGGTCGTCGGGTACGGTGGCCGGAGCTTGTTCTCCGGCGAACAGGAGTGATGATACGCTGTTGCAGCAACATGATGGAATTCAAAGTGCTATTCTTCATTGCAAGAGATCCTTCAATTCCAGAGATTCTTCAATGGATGTTGTTGGTGGTGATGGATCAATGTATTCAACAAGAAATTCTTTTGAGGATGAAGTGTGA

Protein sequence

>Msa0133130

MDALNFLKFWKNNTTTSNITVPHLVVETDSESDEDDSFFDLELSMNDFDNKTNDDTHVQTKTHKTENIIYEKTETNVPQKTTLLMSPNEPISKRKVLPIEPISKPQSPISLLRSAPSFRIFTFRKQRRTGSEKTDEFRKTECEKNQKKETKVFSVKLNIEEDFHSTPMLSRENSTRNFGSKIRNQGTEEPKTERVSKEILQKYLKLIKPLYVKVSKRYGDKVKFSGEGMTVAASPSSSPAVGSLRKVVTKHLGKSRSSGTVAGACSPANRSDDTLLQQHDGIQSAILHCKRSFNSRDSSMDVVGGDGSMYSTRNSFEDEV*