AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0631200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631200 MtrunA17_Chr4g0008591 95.942 616 10 5 1 616 1 601 0.0 1206
Msa0631200 MtrunA17_Chr7g0240371 57.283 508 157 16 117 616 61 516 1.68e-169 493
Msa0631200 MtrunA17_Chr4g0028701 47.205 322 106 6 203 460 238 559 1.16e-79 265
Msa0631200 MtrunA17_Chr2g0327021 47.482 278 119 2 196 446 234 511 9.84e-76 253
Msa0631200 MtrunA17_Chr5g0403251 44.681 329 148 8 167 468 297 618 8.56e-72 246
Msa0631200 MtrunA17_Chr8g0373801 47.078 308 135 5 181 462 359 664 2.66e-71 246
Msa0631200 MtrunA17_Chr1g0177751 42.202 327 144 6 209 507 160 469 1.53e-63 221
Msa0631200 MtrunA17_Chr7g0267481 41.270 315 133 6 214 491 175 474 8.26e-63 219
Msa0631200 MtrunA17_Chr8g0387321 46.183 262 93 6 210 437 185 432 3.54e-61 214
Msa0631200 MtrunA17_Chr4g0025521 44.565 276 128 5 210 462 217 490 1.19e-60 214
Msa0631200 MtrunA17_Chr3g0141931 41.328 271 128 5 207 452 162 426 2.12e-60 207
Msa0631200 MtrunA17_Chr1g0155681 43.561 264 107 4 213 444 173 426 6.73e-60 211
Msa0631200 MtrunA17_Chr3g0141941 41.985 262 125 3 206 444 158 415 3.09e-58 204
Msa0631200 MtrunA17_Chr1g0151681 38.071 197 118 4 269 464 322 515 1.29e-36 144
Msa0631200 MtrunA17_Chr5g0413201 54.902 51 23 0 385 435 246 296 6.09e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631200 AT5G02030.1 45.769 520 192 15 140 616 103 575 7.22e-112 347
Msa0631200 AT2G27990.1 45.455 308 142 5 148 446 206 496 5.36e-73 245
Msa0631200 AT4G36870.2 50.000 256 102 5 210 441 312 565 1.00e-65 229
Msa0631200 AT4G36870.1 50.000 256 102 5 210 441 312 565 1.00e-65 229
Msa0631200 AT1G75410.1 44.828 261 117 5 205 444 162 416 1.38e-63 219
Msa0631200 AT1G75410.2 44.828 261 117 5 205 444 162 416 1.38e-63 219
Msa0631200 AT1G19700.1 45.956 272 103 7 206 444 161 421 1.45e-63 219
Msa0631200 AT1G19700.3 45.956 272 103 7 206 444 161 421 1.45e-63 219
Msa0631200 AT1G19700.5 45.956 272 103 7 206 444 161 421 1.45e-63 219
Msa0631200 AT1G19700.4 45.956 272 103 7 206 444 161 421 1.45e-63 219
Msa0631200 AT1G19700.2 45.956 272 103 7 206 444 161 421 1.45e-63 219
Msa0631200 AT2G23760.2 48.263 259 103 6 210 441 237 491 3.41e-63 220
Msa0631200 AT2G23760.1 48.263 259 103 6 210 441 237 491 3.41e-63 220
Msa0631200 AT2G23760.3 48.263 259 103 6 210 441 237 491 3.41e-63 220
Msa0631200 AT2G16400.1 42.708 288 148 6 204 482 108 387 3.55e-63 216
Msa0631200 AT4G34610.2 37.762 429 209 16 210 616 140 532 1.23e-61 214
Msa0631200 AT4G34610.4 37.762 429 209 16 210 616 140 532 1.23e-61 214
Msa0631200 AT4G34610.3 37.762 429 209 16 210 616 140 532 1.23e-61 214
Msa0631200 AT4G34610.1 37.762 429 209 16 210 616 140 532 1.23e-61 214
Msa0631200 AT2G35940.3 40.854 328 138 8 195 474 175 494 6.60e-58 206
Msa0631200 AT2G35940.1 40.854 328 138 8 195 474 175 494 6.60e-58 206
Msa0631200 AT2G35940.2 40.854 328 138 8 195 474 175 494 6.60e-58 206
Msa0631200 AT2G27220.1 37.190 363 159 12 216 557 82 396 9.89e-57 197
Msa0631200 AT2G27220.3 37.190 363 159 12 216 557 82 396 9.89e-57 197
Msa0631200 AT5G41410.1 43.116 276 105 7 214 446 197 463 1.32e-54 196
Msa0631200 AT2G23760.4 40.193 311 103 7 210 441 237 543 1.40e-53 194
Msa0631200 AT2G27220.2 35.696 381 158 13 216 557 82 414 5.24e-53 188
Msa0631200 AT4G36870.4 46.835 237 100 5 210 422 312 546 1.25e-51 187
Msa0631200 AT4G36870.3 46.383 235 100 5 210 420 312 544 2.74e-50 183
Msa0631200 AT1G75410.3 42.017 238 111 5 205 421 162 393 2.83e-49 177
Msa0631200 AT1G75430.1 37.545 277 137 9 211 458 17 286 5.54e-48 170
Msa0631200 AT2G27990.2 38.168 262 136 5 148 400 206 450 2.72e-42 159
Msa0631200 AT4G32980.1 37.853 177 95 3 269 441 274 439 1.29e-33 134
Msa0631200 AT4G32980.2 37.853 177 95 3 269 441 274 439 1.29e-33 134
Msa0631200 AT1G75430.2 31.507 219 114 9 211 400 17 228 4.79e-22 97.1
Msa0631200 AT1G23380.2 52.727 55 26 0 381 435 255 309 2.61e-11 65.9
Msa0631200 AT1G23380.1 52.727 55 26 0 381 435 253 307 2.84e-11 65.9
Msa0631200 AT1G70510.1 52.727 55 26 0 381 435 237 291 9.60e-11 63.9

Find 127 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAATTACCTTCATTAT+TGG 0.154139 4_3:+13881135 None:intergenic
CAAGAGAAGATCAAGGAAAA+AGG 0.221518 4_3:-13886158 Msa0631200:CDS
GAATCACAAAATAGGCATTT+TGG 0.235036 4_3:-13881100 Msa0631200:CDS
AGTTCAGATTGTTGTTTCTT+TGG 0.238431 4_3:+13886683 None:intergenic
ACATCATTTGAGTATGTTTC+CGG 0.258945 4_3:-13882672 Msa0631200:CDS
ACAGAAGCATATCCAGTAAA+TGG 0.287637 4_3:+13885784 None:intergenic
AGATATGGATCTATGATTTA+TGG 0.297472 4_3:-13885871 Msa0631200:CDS
AAAGAAGGTATAATAATTAA+TGG 0.298565 4_3:+13886547 None:intergenic
TTGGTTGAAGGAGGAGGAGG+AGG 0.308929 4_3:-13885826 Msa0631200:CDS
CTTCAAGCATCTAAAATGTT+TGG 0.311343 4_3:+13882602 None:intergenic
CTTTCACTATTGCCAAATCT+TGG 0.311544 4_3:+13882507 None:intergenic
TTTGATGATGGAATCTCCTT+TGG 0.312465 4_3:-13885650 Msa0631200:CDS
TGCAGCTCCTTATGCAAGTT+TGG 0.333083 4_3:-13882640 Msa0631200:CDS
CTTTATCAAAATCATGGAAT+TGG 0.335858 4_3:-13881214 Msa0631200:CDS
AATCGTTGAGCTGCACTTAG+AGG 0.350236 4_3:+13881175 None:intergenic
CCAACTACAGTTCAATAATA+AGG 0.350401 4_3:-13882565 Msa0631200:CDS
TTATTCAAAGTCTCAAAATA+AGG 0.356326 4_3:+13886081 None:intergenic
TTGTGTATCAGGTGTCAAAT+TGG 0.359128 4_3:-13881633 Msa0631200:intron
GATGAAAGTGTAGACATAGT+AGG 0.360339 4_3:+13886741 None:intergenic
TCATAGATCCATATCTTTGT+AGG 0.361094 4_3:+13885878 None:intergenic
TACCTTCATTATTGGTTTCA+AGG 0.361603 4_3:+13881143 None:intergenic
TGCTGATTCTTCTTTGATGA+TGG 0.364670 4_3:-13885662 Msa0631200:CDS
ATCTTGGAGATTCTTCCTTC+CGG 0.371264 4_3:+13882523 None:intergenic
CTAAGTGCAGCTCAACGATT+TGG 0.381700 4_3:-13881172 Msa0631200:CDS
GGTGGTGGAGGTGTGATTCA+AGG 0.382359 4_3:-13885850 Msa0631200:CDS
TATAGTGACCGGATAGTTAC+CGG 0.382738 4_3:+13886769 None:intergenic
GTTGGTAGTGGAAGCAATAA+TGG 0.383790 4_3:-13881286 Msa0631200:CDS
AATTATGCTTCAAACCTTGT+TGG 0.386490 4_3:+13886241 None:intergenic
AAGGAAGAATCTCCAAGATT+TGG 0.395392 4_3:-13882519 Msa0631200:CDS
TGTTGTCCTTGACTCCTAAC+TGG 0.396442 4_3:+13881373 None:intergenic
GAGTTGAACCTACAAAGATA+TGG 0.397583 4_3:-13885886 Msa0631200:CDS
TAAATGCAAGAGTAAGGCTT+TGG 0.402125 4_3:-13881606 Msa0631200:CDS
GTTGGAAATCTTGGTGTTTG+TGG 0.405935 4_3:-13885703 Msa0631200:CDS
TGAGCTGCACTTAGAGGAAA+TGG 0.414973 4_3:+13881181 None:intergenic
TATCTCTTCTACTTTGTTGT+GGG 0.415721 4_3:+13886355 None:intergenic
TTCTACTTTGTTGTGGGACA+TGG 0.419439 4_3:+13886361 None:intergenic
CAAGGGTTGGTTGAAGGAGG+AGG 0.420449 4_3:-13885832 Msa0631200:CDS
TTCTTCTTCTAATTCTATGA+AGG 0.424324 4_3:-13886214 Msa0631200:CDS
TGGAGGTGTGATTCAAGGGT+TGG 0.429011 4_3:-13885845 Msa0631200:CDS
CCTTATTATTGAACTGTAGT+TGG 0.430289 4_3:+13882565 None:intergenic
GGTTCATAAATGCAAGAGTA+AGG 0.433955 4_3:-13881612 Msa0631200:CDS
TGTTAGTAGTAATTTACCTT+TGG 0.434906 4_3:-13885908 Msa0631200:CDS
GGGTTGGTTGAAGGAGGAGG+AGG 0.435240 4_3:-13885829 Msa0631200:CDS
TATGTCAGGAATTTCATTTA+CGG 0.435500 4_3:+13881396 None:intergenic
TTTGTGCTTGATAAAGAAAA+GGG 0.439408 4_3:+13886034 None:intergenic
TTTATCGCCAAACTTGCATA+AGG 0.446881 4_3:+13882633 None:intergenic
TCTTCCAACAATTCTTGAGC+TGG 0.447343 4_3:+13885736 None:intergenic
GGCTATAACCGGTAACTATC+CGG 0.448169 4_3:-13886777 Msa0631200:five_prime_UTR
AACAAAATGAAGAAAATTGT+CGG 0.448717 4_3:-13881525 Msa0631200:CDS
CTACAAAGTCATGAAACATT+TGG 0.448894 4_3:+13881059 None:intergenic
GCAGCTCAACGATTTGGTCT+TGG 0.449764 4_3:-13881166 Msa0631200:CDS
GATGTTAAGTTTATTATTGA+TGG 0.450666 4_3:+13886571 None:intergenic
GTGGTGGAGGTGTGATTCAA+GGG 0.451179 4_3:-13885849 Msa0631200:CDS
AAGATATCACTGGCTATAAC+CGG 0.452472 4_3:-13886788 Msa0631200:five_prime_UTR
TTATCTCTTCTACTTTGTTG+TGG 0.452626 4_3:+13886354 None:intergenic
GAAACCAGCTCAAGAATTGT+TGG 0.460161 4_3:-13885740 Msa0631200:CDS
TTTATAAACCATTAGAAACT+AGG 0.461852 4_3:-13880943 Msa0631200:three_prime_UTR
CCTCTTTGAGGTCGCCATAC+AGG 0.463860 4_3:+13882438 None:intergenic
ATGAAAGTGTAGACATAGTA+GGG 0.464042 4_3:+13886742 None:intergenic
AACCGGTCTATCGCGTAGCC+AGG 0.468227 4_3:-13881756 Msa0631200:intron
CGCTCGGGGAGTCCTCTTTG+AGG 0.471673 4_3:+13882426 None:intergenic
ATGTGTGATGTTGGAAATCT+TGG 0.472538 4_3:-13885712 Msa0631200:CDS
GTGATTCAAGGGTTGGTTGA+AGG 0.473616 4_3:-13885838 Msa0631200:CDS
TTGAGTGAAGAAGATCCATT+TGG 0.474029 4_3:-13885622 Msa0631200:CDS
TAACCTGACCTATGGCTGTA+AGG 0.479106 4_3:+13882477 None:intergenic
TGACTCCTAACTGGTATGTC+AGG 0.480442 4_3:+13881382 None:intergenic
CCAACACCTACATGTTGAAA+AGG 0.482247 4_3:+13881319 None:intergenic
CTAGGACTTTATCAAAATCA+TGG 0.485498 4_3:-13881220 Msa0631200:CDS
CAAATGTTTCATGACTTTGT+AGG 0.488512 4_3:-13881058 Msa0631200:CDS
TCTTGGTGTTTGTGGTGAAA+AGG 0.489743 4_3:-13885695 Msa0631200:CDS
AAAGAAGAAGAATCATAGAA+AGG 0.493187 4_3:+13886282 None:intergenic
ATGTGAATTTCTTCCACCAT+TGG 0.498530 4_3:+13881580 None:intergenic
TTGAGCAGCAACAACCTGTA+TGG 0.499228 4_3:-13882452 Msa0631200:CDS
AGAACAGTCACAGCACGCTC+GGG 0.499463 4_3:+13882411 None:intergenic
AAATTCCTGACATACCAGTT+AGG 0.508838 4_3:-13881387 Msa0631200:CDS
TTGGAAGAGATGTGTGATGT+TGG 0.509914 4_3:-13885721 Msa0631200:CDS
ATTCAAGGGTTGGTTGAAGG+AGG 0.514542 4_3:-13885835 Msa0631200:CDS
GAATCATAGAAAGGAAGTAA+AGG 0.518144 4_3:+13886291 None:intergenic
GGCCTTGAAACCAATAATGA+AGG 0.519264 4_3:-13881145 Msa0631200:CDS
AACAGGTTTATAAGCGGTAC+AGG 0.526188 4_3:-13882725 Msa0631200:intron
ATAAAAGCACAAGAGAAACT+TGG 0.528456 4_3:+13880961 None:intergenic
ATAATGTTGGCTAAACAAAC+CGG 0.528557 4_3:-13881773 Msa0631200:CDS
TTATTGCGACCATCACCAAA+TGG 0.532053 4_3:+13885607 None:intergenic
GGAATGAACATTGTTGGTAG+TGG 0.533845 4_3:-13881298 Msa0631200:CDS
ATTTACGGCACGCTTGTAAG+TGG 0.534606 4_3:+13881411 None:intergenic
GGTGTTGGAATGAACATTGT+TGG 0.538133 4_3:-13881304 Msa0631200:CDS
GAGGAGGACCTTACAGCCAT+AGG 0.542996 4_3:-13882485 Msa0631200:CDS
AACAAAGTGTGAACTATGAA+AGG 0.544169 4_3:+13886719 None:intergenic
TCTTCACTCAATCTTTCCAA+AGG 0.544697 4_3:+13885634 None:intergenic
AGATTTGGCAATAGTGAAAG+AGG 0.547255 4_3:-13882504 Msa0631200:CDS
GGACCTTACAGCCATAGGTC+AGG 0.547661 4_3:-13882480 Msa0631200:CDS
TTTGGAAGAGATGTAATTGG+TGG 0.549107 4_3:-13881082 Msa0631200:CDS
AGATAAGCTTAGAGTTATTG+TGG 0.550212 4_3:-13886337 Msa0631200:CDS
TGATACAGACAAAATAATGT+TGG 0.550720 4_3:-13881786 Msa0631200:CDS
ATGAAGCTGGATTGAAGTGA+TGG 0.550762 4_3:+13886505 None:intergenic
CTTTGTAGGTTCAACTCCAA+AGG 0.551629 4_3:+13885892 None:intergenic
AAGAACAGTCACAGCACGCT+CGG 0.552428 4_3:+13882410 None:intergenic
CTGTGACTGTTCTTAGAGCA+TGG 0.561711 4_3:-13882401 Msa0631200:CDS
GAAGGTAATTATGTTATGAG+TGG 0.565516 4_3:-13881127 Msa0631200:CDS
ACTTTGAATAATAACAATCA+AGG 0.567232 4_3:-13886069 Msa0631200:CDS
AGGAGCTGCATTGTTGAGGC+CGG 0.568570 4_3:+13882653 None:intergenic
AAAGGAAGTAAAGGTTCATG+AGG 0.570588 4_3:+13886300 None:intergenic
ATTGTTGTTTCTTTGGAACA+AGG 0.573851 4_3:+13886690 None:intergenic
TCTATGATTTATGGTGGTGG+AGG 0.573959 4_3:-13885862 Msa0631200:CDS
CACAGAAACAAAGATATCAC+TGG 0.574567 4_3:-13886798 Msa0631200:five_prime_UTR
AGTAGGGTTTCTATAGTGAC+CGG 0.574764 4_3:+13886758 None:intergenic
ATACTACCAACAGATGCAAT+CGG 0.575247 4_3:-13882700 Msa0631200:CDS
CATAAGGAGCTGCATTGTTG+AGG 0.575307 4_3:+13882649 None:intergenic
GCTCAAGATAACCTGACCTA+TGG 0.580908 4_3:+13882469 None:intergenic
GGATCTATGATTTATGGTGG+TGG 0.583114 4_3:-13885865 Msa0631200:CDS
GAAACTAGAGAAGTATCTGA+AGG 0.584578 4_3:+13881472 None:intergenic
TACCTGGCTACGCGATAGAC+CGG 0.588694 4_3:+13881754 None:intergenic
AACTTATCTGTCGATGTAGA+CGG 0.592212 4_3:+13881442 None:intergenic
GACATACCAGTTAGGAGTCA+AGG 0.598015 4_3:-13881379 Msa0631200:CDS
GAAGAAGATCCATTTGGTGA+TGG 0.601601 4_3:-13885616 Msa0631200:CDS
GATGAAAGTGACAAAGACAA+AGG 0.614377 4_3:+13885940 None:intergenic
AGTAAGGCTTTGGAAACCAA+TGG 0.617622 4_3:-13881596 Msa0631200:CDS
TTACGACCGATTGCATCTGT+TGG 0.619652 4_3:+13882694 None:intergenic
AGTAATGTGTCATTGACACT+AGG 0.633869 4_3:-13881238 Msa0631200:CDS
GAACAGTCACAGCACGCTCG+GGG 0.634057 4_3:+13882412 None:intergenic
CCTGTATGGCGACCTCAAAG+AGG 0.642112 4_3:-13882438 Msa0631200:CDS
ATTGTTGACTATGCTTGATG+AGG 0.645801 4_3:-13885578 Msa0631200:intron
TATGGATCTATGATTTATGG+TGG 0.657447 4_3:-13885868 Msa0631200:CDS
TTACTCAACAGGTTTATAAG+CGG 0.661325 4_3:-13882731 Msa0631200:intron
AAATTCACATGCTAGAAACA+AGG 0.670651 4_3:-13881567 Msa0631200:CDS
AAGGCTTTGGAAACCAATGG+TGG 0.671971 4_3:-13881593 Msa0631200:CDS
TTTGGCAATAGTGAAAGAGG+AGG 0.703422 4_3:-13882501 Msa0631200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATTTTTTTTCATT+TGG - chr4_3:13881260-13881279 Msa0631200:CDS 10.0%
!!! TTTAGTATTTTTTTTCATTT+GGG - chr4_3:13881261-13881280 Msa0631200:CDS 10.0%
!!! GTTTTAATATATTTTTTCTA+TGG - chr4_3:13881316-13881335 Msa0631200:CDS 10.0%
!!! ATTAATTTCCATTTTTTTTT+TGG - chr4_3:13882395-13882414 Msa0631200:CDS 10.0%
!!! TATATTTTTAGATGATAATA+AGG - chr4_3:13883000-13883019 Msa0631200:intron 10.0%
!! AAAACAAAAACTTTAAATTA+GGG + chr4_3:13883242-13883261 None:intergenic 10.0%
!! AAAAACAAAAACTTTAAATT+AGG + chr4_3:13883243-13883262 None:intergenic 10.0%
!!! AAAGAAGGTATAATAATTAA+TGG + chr4_3:13881181-13881200 None:intergenic 15.0%
!!! TTAAGTATTCTTTTAAAAAG+TGG - chr4_3:13882534-13882553 Msa0631200:CDS 15.0%
!! TGTCTTAATTTCTAATTAAT+AGG - chr4_3:13882665-13882684 Msa0631200:CDS 15.0%
!! TTTCTAATTAATAGGTTAAT+AGG - chr4_3:13882673-13882692 Msa0631200:CDS 15.0%
!! TTAAAGTTATACTATATTGA+AGG - chr4_3:13882900-13882919 Msa0631200:intron 15.0%
!! CAAAATTTCACTTATAATTA+GGG + chr4_3:13883149-13883168 None:intergenic 15.0%
!! ACAAAATTTCACTTATAATT+AGG + chr4_3:13883150-13883169 None:intergenic 15.0%
!!! ATTATAAGTGAAATTTTGTT+TGG - chr4_3:13883151-13883170 Msa0631200:intron 15.0%
!!! TTATAAGTGAAATTTTGTTT+GGG - chr4_3:13883152-13883171 Msa0631200:intron 15.0%
!!! TAATATTTCACAATTTTCTA+TGG - chr4_3:13883264-13883283 Msa0631200:intron 15.0%
!! AGAAAAATAAATAACTTCAT+TGG - chr4_3:13883317-13883336 Msa0631200:intron 15.0%
!! AATTGTATATTTAGACAAAT+TGG + chr4_3:13883371-13883390 None:intergenic 15.0%
!!! ATAATTAGATTCTGAAATAT+GGG + chr4_3:13884180-13884199 None:intergenic 15.0%
!!! AATAATTAGATTCTGAAATA+TGG + chr4_3:13884181-13884200 None:intergenic 15.0%
!! ATAGATTTATAGATTTATGT+TGG + chr4_3:13884721-13884740 None:intergenic 15.0%
!! TTTGTAATTTAATACATTCA+GGG + chr4_3:13885541-13885560 None:intergenic 15.0%
!! CTAACAAAAAATATAATTCA+GGG + chr4_3:13885569-13885588 None:intergenic 15.0%
!! ACTAACAAAAAATATAATTC+AGG + chr4_3:13885570-13885589 None:intergenic 15.0%
!!! GAAATTAATGATTTAGAATA+TGG + chr4_3:13886021-13886040 None:intergenic 15.0%
!! GATGTTAAGTTTATTATTGA+TGG + chr4_3:13881157-13881176 None:intergenic 20.0%
!! TTATTCAAAGTCTCAAAATA+AGG + chr4_3:13881647-13881666 None:intergenic 20.0%
!! ACTTTGAATAATAACAATCA+AGG - chr4_3:13881656-13881675 Msa0631200:intron 20.0%
!!! TGTTTTTTTTCTTCTTTTGT+CGG - chr4_3:13882271-13882290 Msa0631200:intron 20.0%
!!! ATTATTTTTGTCATTTTGTG+TGG - chr4_3:13882322-13882341 Msa0631200:intron 20.0%
!! AGAAATCTCCAAAAAAAAAA+TGG + chr4_3:13882406-13882425 None:intergenic 20.0%
!! TATTCTAAATACTCTCAATT+TGG - chr4_3:13882448-13882467 Msa0631200:CDS 20.0%
!! ATTCTAAATACTCTCAATTT+GGG - chr4_3:13882449-13882468 Msa0631200:CDS 20.0%
!! ATCTTAATTTATGTGCATTA+AGG - chr4_3:13882639-13882658 Msa0631200:CDS 20.0%
!!! GCTTTTTAAGAAAAGTTAAT+GGG - chr4_3:13882779-13882798 Msa0631200:intron 20.0%
!! TTAAAAAAGAAATCTATGGT+TGG + chr4_3:13882845-13882864 None:intergenic 20.0%
!! TCACTTAAAAAAGAAATCTA+TGG + chr4_3:13882849-13882868 None:intergenic 20.0%
!!! AATTTTCTATGGAAGTATAT+TGG - chr4_3:13883275-13883294 Msa0631200:intron 20.0%
!! TTCTTATAATTATGACTAGA+GGG + chr4_3:13883519-13883538 None:intergenic 20.0%
!! TTTCTTATAATTATGACTAG+AGG + chr4_3:13883520-13883539 None:intergenic 20.0%
!! TAGAATCATAAATAATCTTG+TGG - chr4_3:13883753-13883772 Msa0631200:intron 20.0%
!! AGTTTATCTAGAAAAAGAAA+TGG - chr4_3:13883906-13883925 Msa0631200:intron 20.0%
!! GTTTATCTAGAAAAAGAAAT+GGG - chr4_3:13883907-13883926 Msa0631200:intron 20.0%
!!! TTTTATCTATTGATCTTGAT+GGG - chr4_3:13883948-13883967 Msa0631200:intron 20.0%
!! AATAAACTATCAAAATGCTT+AGG - chr4_3:13883989-13884008 Msa0631200:intron 20.0%
!! ATAAACTATCAAAATGCTTA+GGG - chr4_3:13883990-13884009 Msa0631200:intron 20.0%
!!! TAAAATGGAATTTCTGATTT+TGG + chr4_3:13884294-13884313 None:intergenic 20.0%
!! TTGAAGTGGTTATATAATTA+GGG + chr4_3:13884593-13884612 None:intergenic 20.0%
!!! TCCTTGTTTAAGAATTAAAA+TGG - chr4_3:13884680-13884699 Msa0631200:intron 20.0%
!!! ACCATTTTAATTCTTAAACA+AGG + chr4_3:13884684-13884703 None:intergenic 20.0%
!! GTTTGTAATTTAATACATTC+AGG + chr4_3:13885542-13885561 None:intergenic 20.0%
!! AACTAAATTGACTAACAAAA+TGG - chr4_3:13885599-13885618 Msa0631200:CDS 20.0%
!! ATAAATGAAATACACATTCT+CGG - chr4_3:13885673-13885692 Msa0631200:CDS 20.0%
!! ATAGATATTGTTATATTGGT+AGG + chr4_3:13886071-13886090 None:intergenic 20.0%
!! CAAGATAGATATTGTTATAT+TGG + chr4_3:13886075-13886094 None:intergenic 20.0%
!! AACAAAATGAAGAAAATTGT+CGG - chr4_3:13886200-13886219 Msa0631200:CDS 20.0%
!! AACATAATTACCTTCATTAT+TGG + chr4_3:13886593-13886612 None:intergenic 20.0%
!! TTTATAAACCATTAGAAACT+AGG - chr4_3:13886782-13886801 Msa0631200:five_prime_UTR 20.0%
! GACAAAAAAAGAAAGAAAGA+AGG + chr4_3:13881196-13881215 None:intergenic 25.0%
!! AAACTTTTTATAGATGAAGC+TGG + chr4_3:13881236-13881255 None:intergenic 25.0%
! AAAGAAGAAGAATCATAGAA+AGG + chr4_3:13881446-13881465 None:intergenic 25.0%
!! ACTAATTTTACTAACCAACA+AGG - chr4_3:13881470-13881489 Msa0631200:CDS 25.0%
! TTCTTCTTCTAATTCTATGA+AGG - chr4_3:13881511-13881530 Msa0631200:CDS 25.0%
! TTTGTGCTTGATAAAGAAAA+GGG + chr4_3:13881694-13881713 None:intergenic 25.0%
!! TTTTGTGCTTGATAAAGAAA+AGG + chr4_3:13881695-13881714 None:intergenic 25.0%
! TGTTAGTAGTAATTTACCTT+TGG - chr4_3:13881817-13881836 Msa0631200:intron 25.0%
! AGATATGGATCTATGATTTA+TGG - chr4_3:13881854-13881873 Msa0631200:intron 25.0%
!!! GTATTCTTTTAAAAAGTGGA+CGG - chr4_3:13882538-13882557 Msa0631200:CDS 25.0%
!!! AGGTTAATAGGTTAGTTTTA+TGG - chr4_3:13882685-13882704 Msa0631200:CDS 25.0%
! ATTCTTGCATTATATTGTGA+TGG - chr4_3:13882734-13882753 Msa0631200:intron 25.0%
!!! GGCTTTTTAAGAAAAGTTAA+TGG - chr4_3:13882778-13882797 Msa0631200:intron 25.0%
! TTTAAGAAAAGTTAATGGGA+AGG - chr4_3:13882783-13882802 Msa0631200:intron 25.0%
!! GAAGTATAAATCTTTTCCAA+TGG + chr4_3:13882929-13882948 None:intergenic 25.0%
! TTAGATGATAATAAGGTGAT+TGG - chr4_3:13883007-13883026 Msa0631200:intron 25.0%
!! CTATTTCTCCCTTAAATTAT+TGG - chr4_3:13883110-13883129 Msa0631200:intron 25.0%
! GGTGTATACCAATAATTTAA+GGG + chr4_3:13883121-13883140 None:intergenic 25.0%
! AGGTGTATACCAATAATTTA+AGG + chr4_3:13883122-13883141 None:intergenic 25.0%
! TTTGTTTGGGTCTATTTATA+AGG - chr4_3:13883165-13883184 Msa0631200:intron 25.0%
! GCAATACTCTTTCTTATATT+TGG - chr4_3:13883664-13883683 Msa0631200:intron 25.0%
!! TTCTTATATTTGGAACAAGA+AGG - chr4_3:13883674-13883693 Msa0631200:intron 25.0%
! TCTTGTGGTACATATTTAAT+TGG - chr4_3:13883768-13883787 Msa0631200:intron 25.0%
! TATCACGATTATTGTCATAT+TGG + chr4_3:13883843-13883862 None:intergenic 25.0%
! AATGAACTTTATGTATGTCT+TGG - chr4_3:13883876-13883895 Msa0631200:intron 25.0%
!! CTTTTATCTATTGATCTTGA+TGG - chr4_3:13883947-13883966 Msa0631200:intron 25.0%
! AAATATGGGTTTGAAAAGAT+AGG + chr4_3:13884166-13884185 None:intergenic 25.0%
! ATAAGTAAGTTTGCGTAAAA+AGG - chr4_3:13884476-13884495 Msa0631200:intron 25.0%
! CTTGAAGTGGTTATATAATT+AGG + chr4_3:13884594-13884613 None:intergenic 25.0%
! CTAATTATATAACCACTTCA+AGG - chr4_3:13884592-13884611 Msa0631200:intron 25.0%
! GTGTATGTGATTCATAATTT+AGG + chr4_3:13884641-13884660 None:intergenic 25.0%
!!! GTTCTATATTTTTACTCAAC+AGG - chr4_3:13884983-13885002 Msa0631200:intron 25.0%
! GAAATAAACGAAACATAGAA+TGG + chr4_3:13885380-13885399 None:intergenic 25.0%
! TAAATGAAATACACATTCTC+GGG - chr4_3:13885674-13885693 Msa0631200:CDS 25.0%
!! TTCAAAAGCTTTTACATTTG+TGG - chr4_3:13885873-13885892 Msa0631200:CDS 25.0%
!!! ATTATTTTGTCTGTATCAGT+AGG + chr4_3:13885937-13885956 None:intergenic 25.0%
! TGATACAGACAAAATAATGT+TGG - chr4_3:13885939-13885958 Msa0631200:CDS 25.0%
! TGGTAGGATTATAAATTCAT+TGG + chr4_3:13886055-13886074 None:intergenic 25.0%
!!! TCATTTTGTTGTGAATCTTT+TGG + chr4_3:13886190-13886209 None:intergenic 25.0%
! TATGTCAGGAATTTCATTTA+CGG + chr4_3:13886332-13886351 None:intergenic 25.0%
! CTTTATCAAAATCATGGAAT+TGG - chr4_3:13886511-13886530 Msa0631200:five_prime_UTR 25.0%
!!! GTATGTACGTTTATTTTGAT+TGG - chr4_3:13886721-13886740 Msa0631200:five_prime_UTR 25.0%
!! TTTTTCTTCCTAGTTTCTAA+TGG + chr4_3:13886793-13886812 None:intergenic 25.0%
! ATGAAAGTGTAGACATAGTA+GGG + chr4_3:13880986-13881005 None:intergenic 30.0%
AACAAAGTGTGAACTATGAA+AGG + chr4_3:13881009-13881028 None:intergenic 30.0%
!! ATTGTTGTTTCTTTGGAACA+AGG + chr4_3:13881038-13881057 None:intergenic 30.0%
!! AGTTCAGATTGTTGTTTCTT+TGG + chr4_3:13881045-13881064 None:intergenic 30.0%
! TATCTCTTCTACTTTGTTGT+GGG + chr4_3:13881373-13881392 None:intergenic 30.0%
TTATCTCTTCTACTTTGTTG+TGG + chr4_3:13881374-13881393 None:intergenic 30.0%
AGATAAGCTTAGAGTTATTG+TGG - chr4_3:13881388-13881407 Msa0631200:CDS 30.0%
GAATCATAGAAAGGAAGTAA+AGG + chr4_3:13881437-13881456 None:intergenic 30.0%
AATTATGCTTCAAACCTTGT+TGG + chr4_3:13881487-13881506 None:intergenic 30.0%
AAGAGAAGATCAAGGAAAAA+GGG - chr4_3:13881568-13881587 Msa0631200:CDS 30.0%
TCATAGATCCATATCTTTGT+AGG + chr4_3:13881850-13881869 None:intergenic 30.0%
TATGGATCTATGATTTATGG+TGG - chr4_3:13881857-13881876 Msa0631200:intron 30.0%
!!! TTTTTGTCATTTTGTGTGGA+TGG - chr4_3:13882326-13882345 Msa0631200:intron 30.0%
!!! CTAGTTTAGCTTTTGTTTCA+TGG - chr4_3:13882611-13882630 Msa0631200:CDS 30.0%
! TTGCATTATATTGTGATGGA+TGG - chr4_3:13882738-13882757 Msa0631200:intron 30.0%
ACTATATTGAAGGAATCCAT+TGG - chr4_3:13882910-13882929 Msa0631200:intron 30.0%
GTAAAGCCAATCTTACATAA+AGG + chr4_3:13883033-13883052 None:intergenic 30.0%
!! TAAGATTGGCTTTACTTGTT+TGG - chr4_3:13883038-13883057 Msa0631200:intron 30.0%
ATAAGGAAAAAAGTTGCAAC+CGG - chr4_3:13883182-13883201 Msa0631200:intron 30.0%
AAGCAATAATTTCATCTTGC+CGG + chr4_3:13883204-13883223 None:intergenic 30.0%
! TTTTTGCTTATAGTTGTGAC+CGG - chr4_3:13883626-13883645 Msa0631200:intron 30.0%
TGTGGTACATATTTAATTGG+TGG - chr4_3:13883771-13883790 Msa0631200:intron 30.0%
TTGATTGCATAGTCATTTCT+TGG + chr4_3:13884781-13884800 None:intergenic 30.0%
CATATCAATGAAACAGCAAA+AGG + chr4_3:13884834-13884853 None:intergenic 30.0%
GTTCTATACTTATTATCCGT+TGG - chr4_3:13884882-13884901 Msa0631200:intron 30.0%
TATCAAACATTGTCAACTGA+AGG + chr4_3:13884941-13884960 None:intergenic 30.0%
TTACTCAACAGGTTTATAAG+CGG - chr4_3:13884994-13885013 Msa0631200:intron 30.0%
ACATCATTTGAGTATGTTTC+CGG - chr4_3:13885053-13885072 Msa0631200:intron 30.0%
! CTTCAAGCATCTAAAATGTT+TGG + chr4_3:13885126-13885145 None:intergenic 30.0%
! ACATTTTAGATGCTTGAAGA+AGG - chr4_3:13885127-13885146 Msa0631200:intron 30.0%
CCTTATTATTGAACTGTAGT+TGG + chr4_3:13885163-13885182 None:intergenic 30.0%
CCAACTACAGTTCAATAATA+AGG - chr4_3:13885160-13885179 Msa0631200:intron 30.0%
!!! GATGTTTCAATTTTTGGCAA+TGG + chr4_3:13885449-13885468 None:intergenic 30.0%
! AGCACAGATGTTTCAATTTT+TGG + chr4_3:13885455-13885474 None:intergenic 30.0%
AAAAATTGAAACATCTGTGC+TGG - chr4_3:13885454-13885473 Msa0631200:intron 30.0%
AAAATTGAAACATCTGTGCT+GGG - chr4_3:13885455-13885474 Msa0631200:intron 30.0%
! TAGTTTTTGAATGTGTACAG+AGG - chr4_3:13885502-13885521 Msa0631200:intron 30.0%
! AGTTTTTGAATGTGTACAGA+GGG - chr4_3:13885503-13885522 Msa0631200:intron 30.0%
ACTAACAAAATGGATATTCG+AGG - chr4_3:13885609-13885628 Msa0631200:CDS 30.0%
! ACTCGTTTTATACTTTAGTC+AGG - chr4_3:13885772-13885791 Msa0631200:CDS 30.0%
TTATACTTTAGTCAGGATCA+CGG - chr4_3:13885779-13885798 Msa0631200:CDS 30.0%
! ATAATGTTGGCTAAACAAAC+CGG - chr4_3:13885952-13885971 Msa0631200:CDS 30.0%
CAATATCTATCTTGTGTATC+AGG - chr4_3:13886081-13886100 Msa0631200:CDS 30.0%
AAATTCACATGCTAGAAACA+AGG - chr4_3:13886158-13886177 Msa0631200:CDS 30.0%
CTAGGACTTTATCAAAATCA+TGG - chr4_3:13886505-13886524 Msa0631200:five_prime_UTR 30.0%
!! TACCTTCATTATTGGTTTCA+AGG + chr4_3:13886585-13886604 None:intergenic 30.0%
GAAGGTAATTATGTTATGAG+TGG - chr4_3:13886598-13886617 Msa0631200:five_prime_UTR 30.0%
!!! GTGGTTTTGAATCACAAAAT+AGG - chr4_3:13886617-13886636 Msa0631200:five_prime_UTR 30.0%
! GAATCACAAAATAGGCATTT+TGG - chr4_3:13886625-13886644 Msa0631200:five_prime_UTR 30.0%
!! CATTTTGGAAGAGATGTAAT+TGG - chr4_3:13886640-13886659 Msa0631200:five_prime_UTR 30.0%
CTACAAAGTCATGAAACATT+TGG + chr4_3:13886669-13886688 None:intergenic 30.0%
CAAATGTTTCATGACTTTGT+AGG - chr4_3:13886667-13886686 Msa0631200:five_prime_UTR 30.0%
! ATAAAAGCACAAGAGAAACT+TGG + chr4_3:13886767-13886786 None:intergenic 30.0%
CACAGAAACAAAGATATCAC+TGG - chr4_3:13880927-13880946 Msa0631200:three_prime_UTR 35.0%
! AAGATATCACTGGCTATAAC+CGG - chr4_3:13880937-13880956 Msa0631200:three_prime_UTR 35.0%
! GATGAAAGTGTAGACATAGT+AGG + chr4_3:13880987-13881006 None:intergenic 35.0%
! TTTTTCTATGGCTAGTGATG+AGG - chr4_3:13881328-13881347 Msa0631200:CDS 35.0%
! TTTTCTATGGCTAGTGATGA+GGG - chr4_3:13881329-13881348 Msa0631200:CDS 35.0%
AAAGGAAGTAAAGGTTCATG+AGG + chr4_3:13881428-13881447 None:intergenic 35.0%
!!! CGTTTTTCAAGAGAAGATCA+AGG - chr4_3:13881560-13881579 Msa0631200:CDS 35.0%
CAAGAGAAGATCAAGGAAAA+AGG - chr4_3:13881567-13881586 Msa0631200:CDS 35.0%
GATGAAAGTGACAAAGACAA+AGG + chr4_3:13881788-13881807 None:intergenic 35.0%
GAGTTGAACCTACAAAGATA+TGG - chr4_3:13881839-13881858 Msa0631200:intron 35.0%
! ACAGAAGCATATCCAGTAAA+TGG + chr4_3:13881944-13881963 None:intergenic 35.0%
!! TGGATATGCTTCTGTTTTGA+AGG - chr4_3:13881949-13881968 Msa0631200:intron 35.0%
!!! CTTCTGTTTTGAAGGATTCT+AGG - chr4_3:13881957-13881976 Msa0631200:intron 35.0%
ATGTGTGATGTTGGAAATCT+TGG - chr4_3:13882013-13882032 Msa0631200:intron 35.0%
!! TGCTGATTCTTCTTTGATGA+TGG - chr4_3:13882063-13882082 Msa0631200:intron 35.0%
!! TTTGATGATGGAATCTCCTT+TGG - chr4_3:13882075-13882094 Msa0631200:intron 35.0%
TCTTCACTCAATCTTTCCAA+AGG + chr4_3:13882094-13882113 None:intergenic 35.0%
TTGAGTGAAGAAGATCCATT+TGG - chr4_3:13882103-13882122 Msa0631200:intron 35.0%
! ATTGTTGACTATGCTTGATG+AGG - chr4_3:13882147-13882166 Msa0631200:intron 35.0%
!!! TGGACGGTTTATTTTGTTAG+TGG - chr4_3:13882554-13882573 Msa0631200:CDS 35.0%
!!! CGGTTTATTTTGTTAGTGGT+AGG - chr4_3:13882558-13882577 Msa0631200:CDS 35.0%
AGGCTAACATAAGGTTTGAT+TGG - chr4_3:13882578-13882597 Msa0631200:CDS 35.0%
AATGGGAAGGAATATATGCA+TGG - chr4_3:13882796-13882815 Msa0631200:intron 35.0%
AGGAATATATGCATGGAGAT+TGG - chr4_3:13882803-13882822 Msa0631200:intron 35.0%
ACTATGTCACCCAATTTGTA+GGG - chr4_3:13882868-13882887 Msa0631200:intron 35.0%
GCAAATCATCCCTACAAATT+GGG + chr4_3:13882880-13882899 None:intergenic 35.0%
AGCAAATCATCCCTACAAAT+TGG + chr4_3:13882881-13882900 None:intergenic 35.0%
!! GATTGGCCTTTATGTAAGAT+TGG - chr4_3:13883024-13883043 Msa0631200:intron 35.0%
TCACTTATAATTAGGGCATG+AGG + chr4_3:13883142-13883161 None:intergenic 35.0%
!!! GAACTTGTTAAGGTGCTTTT+GGG + chr4_3:13883484-13883503 None:intergenic 35.0%
!! TACCTTGAAGGAACTTGTTA+AGG + chr4_3:13883494-13883513 None:intergenic 35.0%
! TTTATGTATGTCTTGGCTTG+TGG - chr4_3:13883883-13883902 Msa0631200:intron 35.0%
! ATGCAGCATGGACTATAATA+TGG + chr4_3:13884122-13884141 None:intergenic 35.0%
TTGTAGAAATGTACTGCAGA+AGG - chr4_3:13884202-13884221 Msa0631200:intron 35.0%
TTAACACAAGTTTCACACGA+GGG + chr4_3:13884325-13884344 None:intergenic 35.0%
ATTAACACAAGTTTCACACG+AGG + chr4_3:13884326-13884345 None:intergenic 35.0%
ATTCCTTAACCAATGCTCTT+AGG - chr4_3:13884551-13884570 Msa0631200:intron 35.0%
! AACAAACGTTTTCCTTGAAG+TGG + chr4_3:13884607-13884626 None:intergenic 35.0%
TACACATCATTCACTTGTGA+AGG - chr4_3:13884656-13884675 Msa0631200:intron 35.0%
TAAAATGGTGCAAGTCATGA+CGG - chr4_3:13884695-13884714 Msa0631200:intron 35.0%
ATACTACCAACAGATGCAAT+CGG - chr4_3:13885025-13885044 Msa0631200:intron 35.0%
TTTATCGCCAAACTTGCATA+AGG + chr4_3:13885095-13885114 None:intergenic 35.0%
AAGGAAGAATCTCCAAGATT+TGG - chr4_3:13885206-13885225 Msa0631200:intron 35.0%
CTTTCACTATTGCCAAATCT+TGG + chr4_3:13885221-13885240 None:intergenic 35.0%
AGATTTGGCAATAGTGAAAG+AGG - chr4_3:13885221-13885240 Msa0631200:intron 35.0%
GAAACATAGAATGGCACTTA+CGG + chr4_3:13885371-13885390 None:intergenic 35.0%
ATTTCGATTAAGCAATGCCT+TGG - chr4_3:13885395-13885414 Msa0631200:intron 35.0%
CAATGCCTTGGTCAAATTAA+AGG - chr4_3:13885407-13885426 Msa0631200:intron 35.0%
!! TCATGCCTTTAATTTGACCA+AGG + chr4_3:13885415-13885434 None:intergenic 35.0%
!!! GTTTCAATTTTTGGCAATGG+AGG + chr4_3:13885446-13885465 None:intergenic 35.0%
CAGTTGCATTACATCTATCA+AGG + chr4_3:13885822-13885841 None:intergenic 35.0%
TTATCGAGATAAAGCTTACC+TGG + chr4_3:13885990-13886009 None:intergenic 35.0%
TTGTGTATCAGGTGTCAAAT+TGG - chr4_3:13886092-13886111 Msa0631200:CDS 35.0%
GGTTCATAAATGCAAGAGTA+AGG - chr4_3:13886113-13886132 Msa0631200:CDS 35.0%
TAAATGCAAGAGTAAGGCTT+TGG - chr4_3:13886119-13886138 Msa0631200:CDS 35.0%
ATGTGAATTTCTTCCACCAT+TGG + chr4_3:13886148-13886167 None:intergenic 35.0%
!! GAAACTAGAGAAGTATCTGA+AGG + chr4_3:13886256-13886275 None:intergenic 35.0%
AACTTATCTGTCGATGTAGA+CGG + chr4_3:13886286-13886305 None:intergenic 35.0%
AAATTCCTGACATACCAGTT+AGG - chr4_3:13886338-13886357 Msa0631200:CDS 35.0%
! AGTCTACCTTTTCAACATGT+AGG - chr4_3:13886400-13886419 Msa0631200:exon 35.0%
! AGTAATGTGTCATTGACACT+AGG - chr4_3:13886487-13886506 Msa0631200:five_prime_UTR 35.0%
TTTGGAAGAGATGTAATTGG+TGG - chr4_3:13886643-13886662 Msa0631200:five_prime_UTR 35.0%
TATAGTGACCGGATAGTTAC+CGG + chr4_3:13880959-13880978 None:intergenic 40.0%
AGTAGGGTTTCTATAGTGAC+CGG + chr4_3:13880970-13880989 None:intergenic 40.0%
ATGAAGCTGGATTGAAGTGA+TGG + chr4_3:13881223-13881242 None:intergenic 40.0%
! TTCTACTTTGTTGTGGGACA+TGG + chr4_3:13881367-13881386 None:intergenic 40.0%
CTTTGTAGGTTCAACTCCAA+AGG + chr4_3:13881836-13881855 None:intergenic 40.0%
GGATCTATGATTTATGGTGG+TGG - chr4_3:13881860-13881879 Msa0631200:intron 40.0%
!! TCTATGATTTATGGTGGTGG+AGG - chr4_3:13881863-13881882 Msa0631200:intron 40.0%
GAAACCAGCTCAAGAATTGT+TGG - chr4_3:13881985-13882004 Msa0631200:intron 40.0%
TCTTCCAACAATTCTTGAGC+TGG + chr4_3:13881992-13882011 None:intergenic 40.0%
TTGGAAGAGATGTGTGATGT+TGG - chr4_3:13882004-13882023 Msa0631200:intron 40.0%
!! GTTGGAAATCTTGGTGTTTG+TGG - chr4_3:13882022-13882041 Msa0631200:intron 40.0%
!! TCTTGGTGTTTGTGGTGAAA+AGG - chr4_3:13882030-13882049 Msa0631200:intron 40.0%
! GAAGAAGATCCATTTGGTGA+TGG - chr4_3:13882109-13882128 Msa0631200:intron 40.0%
TTATTGCGACCATCACCAAA+TGG + chr4_3:13882121-13882140 None:intergenic 40.0%
GTTAGTGGTAGGCTAACATA+AGG - chr4_3:13882569-13882588 Msa0631200:CDS 40.0%
!! TATATTGTGATGGATGGCCT+CGG - chr4_3:13882744-13882763 Msa0631200:intron 40.0%
GACTATGTCACCCAATTTGT+AGG - chr4_3:13882867-13882886 Msa0631200:intron 40.0%
!!! GGAACTTGTTAAGGTGCTTT+TGG + chr4_3:13883485-13883504 None:intergenic 40.0%
CACCTTAACAAGTTCCTTCA+AGG - chr4_3:13883489-13883508 Msa0631200:intron 40.0%
! AAGAAAAAGCACATGCAGCA+TGG + chr4_3:13884134-13884153 None:intergenic 40.0%
!!! TGCTGCATGTGCTTTTTCTT+CGG - chr4_3:13884134-13884153 Msa0631200:intron 40.0%
!!! ACGAGGGTTTTAGGCTAAAA+TGG + chr4_3:13884309-13884328 None:intergenic 40.0%
! AAGTTTCACACGAGGGTTTT+AGG + chr4_3:13884318-13884337 None:intergenic 40.0%
CTAACTATCCCGTGATCTTA+GGG - chr4_3:13884434-13884453 Msa0631200:intron 40.0%
TAACCAATGCCCTAAGATCA+CGG + chr4_3:13884446-13884465 None:intergenic 40.0%
!! TGTCCTAAGAGCATTGGTTA+AGG + chr4_3:13884557-13884576 None:intergenic 40.0%
AGAACATAGTTCGTCTCAGA+GGG + chr4_3:13884867-13884886 None:intergenic 40.0%
TAGAACATAGTTCGTCTCAG+AGG + chr4_3:13884868-13884887 None:intergenic 40.0%
TGTTTGTGTCAGTGCTTCAT+AGG - chr4_3:13884905-13884924 Msa0631200:intron 40.0%
AACAGGTTTATAAGCGGTAC+AGG - chr4_3:13885000-13885019 Msa0631200:intron 40.0%
ATCTTGGAGATTCTTCCTTC+CGG + chr4_3:13885205-13885224 None:intergenic 40.0%
TTTGGCAATAGTGAAAGAGG+AGG - chr4_3:13885224-13885243 Msa0631200:intron 40.0%
!! AGTAAGGCTTTGGAAACCAA+TGG - chr4_3:13886129-13886148 Msa0631200:CDS 40.0%
CCAACACCTACATGTTGAAA+AGG + chr4_3:13886409-13886428 None:intergenic 40.0%
! CCTTTTCAACATGTAGGTGT+TGG - chr4_3:13886406-13886425 Msa0631200:exon 40.0%
! GGTGTTGGAATGAACATTGT+TGG - chr4_3:13886421-13886440 Msa0631200:five_prime_UTR 40.0%
! GGAATGAACATTGTTGGTAG+TGG - chr4_3:13886427-13886446 Msa0631200:five_prime_UTR 40.0%
!! GTTGGTAGTGGAAGCAATAA+TGG - chr4_3:13886439-13886458 Msa0631200:five_prime_UTR 40.0%
GGCCTTGAAACCAATAATGA+AGG - chr4_3:13886580-13886599 Msa0631200:five_prime_UTR 40.0%
GGCTATAACCGGTAACTATC+CGG - chr4_3:13880948-13880967 Msa0631200:three_prime_UTR 45.0%
!! GCTAGTGATGAGGGTTTTGA+AGG - chr4_3:13881338-13881357 Msa0631200:CDS 45.0%
!! GTGATTCAAGGGTTGGTTGA+AGG - chr4_3:13881887-13881906 Msa0631200:intron 45.0%
!! ATTCAAGGGTTGGTTGAAGG+AGG - chr4_3:13881890-13881909 Msa0631200:intron 45.0%
AAAGCCAATTGAGTTCACCG+AGG + chr4_3:13882764-13882783 None:intergenic 45.0%
TTGCTTATAGTTGTGACCGG+AGG - chr4_3:13883629-13883648 Msa0631200:intron 45.0%
TGCTTATAGTTGTGACCGGA+GGG - chr4_3:13883630-13883649 Msa0631200:intron 45.0%
!!! GCATGTGCTTTTTCTTCGGT+TGG - chr4_3:13884138-13884157 Msa0631200:intron 45.0%
GCTAACTATCCCGTGATCTT+AGG - chr4_3:13884433-13884452 Msa0631200:intron 45.0%
AACCAATGCCCTAAGATCAC+GGG + chr4_3:13884445-13884464 None:intergenic 45.0%
AACCAATGCTCTTAGGACAC+TGG - chr4_3:13884558-13884577 Msa0631200:intron 45.0%
! AACCAGTGTCCTAAGAGCAT+TGG + chr4_3:13884563-13884582 None:intergenic 45.0%
GAACATAGTTCGTCTCAGAG+GGG + chr4_3:13884866-13884885 None:intergenic 45.0%
!! AGCACTGACACAAACACCAA+CGG + chr4_3:13884901-13884920 None:intergenic 45.0%
TTACGACCGATTGCATCTGT+TGG + chr4_3:13885034-13885053 None:intergenic 45.0%
CATAAGGAGCTGCATTGTTG+AGG + chr4_3:13885079-13885098 None:intergenic 45.0%
TGCAGCTCCTTATGCAAGTT+TGG - chr4_3:13885085-13885104 Msa0631200:intron 45.0%
! CGCATTTTCACACAAGCAAC+CGG - chr4_3:13885183-13885202 Msa0631200:intron 45.0%
! TTTTCACACAAGCAACCGGA+AGG - chr4_3:13885187-13885206 Msa0631200:intron 45.0%
TAACCTGACCTATGGCTGTA+AGG + chr4_3:13885251-13885270 None:intergenic 45.0%
GCTCAAGATAACCTGACCTA+TGG + chr4_3:13885259-13885278 None:intergenic 45.0%
TTGAGCAGCAACAACCTGTA+TGG - chr4_3:13885273-13885292 Msa0631200:intron 45.0%
CTGTGACTGTTCTTAGAGCA+TGG - chr4_3:13885324-13885343 Msa0631200:intron 45.0%
GACAATGCTCGACACATTCA+AGG - chr4_3:13885733-13885752 Msa0631200:CDS 45.0%
!!! AGCTTTTGAAGTCACCACCA+CGG + chr4_3:13885863-13885882 None:intergenic 45.0%
ATCAGTAGGATAGCTGCACA+AGG + chr4_3:13885923-13885942 None:intergenic 45.0%
!! AAGGCTTTGGAAACCAATGG+TGG - chr4_3:13886132-13886151 Msa0631200:CDS 45.0%
ATTTACGGCACGCTTGTAAG+TGG + chr4_3:13886317-13886336 None:intergenic 45.0%
TGACTCCTAACTGGTATGTC+AGG + chr4_3:13886346-13886365 None:intergenic 45.0%
GACATACCAGTTAGGAGTCA+AGG - chr4_3:13886346-13886365 Msa0631200:CDS 45.0%
TGTTGTCCTTGACTCCTAAC+TGG + chr4_3:13886355-13886374 None:intergenic 45.0%
TGAGCTGCACTTAGAGGAAA+TGG + chr4_3:13886547-13886566 None:intergenic 45.0%
AATCGTTGAGCTGCACTTAG+AGG + chr4_3:13886553-13886572 None:intergenic 45.0%
CTAAGTGCAGCTCAACGATT+TGG - chr4_3:13886553-13886572 Msa0631200:five_prime_UTR 45.0%
!!! TATTTTTTTTATTCTTTAAA+TGG - chr4_3:13883455-13883474 Msa0631200:intron 5.0%
!!! AATTATAAGAAAAAAATTTT+AGG - chr4_3:13883528-13883547 Msa0631200:intron 5.0%
! GTGGTGGAGGTGTGATTCAA+GGG - chr4_3:13881876-13881895 Msa0631200:intron 50.0%
! TGGAGGTGTGATTCAAGGGT+TGG - chr4_3:13881880-13881899 Msa0631200:intron 50.0%
GGGGGTTCAGTTCCATTTAC+TGG - chr4_3:13881929-13881948 Msa0631200:intron 50.0%
ATGGCCTCGGTGAACTCAAT+TGG - chr4_3:13882757-13882776 Msa0631200:intron 50.0%
! GACTAGAGGGTGTACCTTGA+AGG + chr4_3:13883506-13883525 None:intergenic 50.0%
TTGCTCACATGTACACCCTC+CGG + chr4_3:13883648-13883667 None:intergenic 50.0%
ATCCCGTGATCTTAGGGCAT+TGG - chr4_3:13884440-13884459 Msa0631200:intron 50.0%
AAGAACAGTCACAGCACGCT+CGG + chr4_3:13885318-13885337 None:intergenic 50.0%
GATCACGGTTGTGTTGCGTT+AGG - chr4_3:13885794-13885813 Msa0631200:CDS 50.0%
AAATGCAGTCGCAATGACCG+TGG - chr4_3:13885843-13885862 Msa0631200:CDS 50.0%
!! GCAGCTCAACGATTTGGTCT+TGG - chr4_3:13886559-13886578 Msa0631200:five_prime_UTR 50.0%
!! GGTGGTGGAGGTGTGATTCA+AGG - chr4_3:13881875-13881894 Msa0631200:intron 55.0%
!! CAAGGGTTGGTTGAAGGAGG+AGG - chr4_3:13881893-13881912 Msa0631200:intron 55.0%
TTGGTTGAAGGAGGAGGAGG+AGG - chr4_3:13881899-13881918 Msa0631200:intron 55.0%
AGGAGCTGCATTGTTGAGGC+CGG + chr4_3:13885075-13885094 None:intergenic 55.0%
GAGGAGGACCTTACAGCCAT+AGG - chr4_3:13885240-13885259 Msa0631200:intron 55.0%
GGACCTTACAGCCATAGGTC+AGG - chr4_3:13885245-13885264 Msa0631200:intron 55.0%
!! CCTCTTTGAGGTCGCCATAC+AGG + chr4_3:13885290-13885309 None:intergenic 55.0%
CCTGTATGGCGACCTCAAAG+AGG - chr4_3:13885287-13885306 Msa0631200:intron 55.0%
AGAACAGTCACAGCACGCTC+GGG + chr4_3:13885317-13885336 None:intergenic 55.0%
TACCTGGCTACGCGATAGAC+CGG + chr4_3:13885974-13885993 None:intergenic 55.0%
!! GGGTTGGTTGAAGGAGGAGG+AGG - chr4_3:13881896-13881915 Msa0631200:intron 60.0%
GTTGAAGGAGGAGGAGGAGG+AGG - chr4_3:13881902-13881921 Msa0631200:intron 60.0%
GAGGAGGAGGAGGAGGAAGT+GGG - chr4_3:13881909-13881928 Msa0631200:intron 60.0%
AGGAGGAGGAGGAGGAAGTG+GGG - chr4_3:13881910-13881929 Msa0631200:intron 60.0%
GAACAGTCACAGCACGCTCG+GGG + chr4_3:13885316-13885335 None:intergenic 60.0%
TGCAGTCGCAATGACCGTGG+TGG - chr4_3:13885846-13885865 Msa0631200:CDS 60.0%
AACCGGTCTATCGCGTAGCC+AGG - chr4_3:13885969-13885988 Msa0631200:CDS 60.0%
GGAGGAGGAGGAGGAGGAAG+TGG - chr4_3:13881908-13881927 Msa0631200:intron 65.0%
GGAGGAGGAGGAGGAAGTGG+GGG - chr4_3:13881911-13881930 Msa0631200:intron 65.0%
CGCTCGGGGAGTCCTCTTTG+AGG + chr4_3:13885302-13885321 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 13880917 13886830 13880917 ID=Msa0631200;Name=Msa0631200
chr4_3 mRNA 13880917 13886830 13880917 ID=Msa0631200-mRNA-1;Parent=Msa0631200;Name=Msa0631200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=418|1|1|1|1|1|4|137|616
chr4_3 exon 13880917 13881644 13880917 ID=Msa0631200-mRNA-1:exon:3894;Parent=Msa0631200-mRNA-1
chr4_3 exon 13881757 13881817 13881757 ID=Msa0631200-mRNA-1:exon:3893;Parent=Msa0631200-mRNA-1
chr4_3 exon 13882378 13882742 13882378 ID=Msa0631200-mRNA-1:exon:3892;Parent=Msa0631200-mRNA-1
chr4_3 exon 13885579 13886830 13885579 ID=Msa0631200-mRNA-1:exon:3891;Parent=Msa0631200-mRNA-1
chr4_3 five_prime_UTR 13886413 13886830 13886413 ID=Msa0631200-mRNA-1:five_prime_utr;Parent=Msa0631200-mRNA-1
chr4_3 CDS 13885579 13886412 13885579 ID=Msa0631200-mRNA-1:cds;Parent=Msa0631200-mRNA-1
chr4_3 CDS 13882378 13882742 13882378 ID=Msa0631200-mRNA-1:cds;Parent=Msa0631200-mRNA-1
chr4_3 CDS 13881757 13881817 13881757 ID=Msa0631200-mRNA-1:cds;Parent=Msa0631200-mRNA-1
chr4_3 CDS 13881054 13881644 13881054 ID=Msa0631200-mRNA-1:cds;Parent=Msa0631200-mRNA-1
chr4_3 three_prime_UTR 13880917 13881053 13880917 ID=Msa0631200-mRNA-1:three_prime_utr;Parent=Msa0631200-mRNA-1
Gene Sequence

>Msa0631200

ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTATTGTGGCTCAAAATCAACAACCTCATGAACCTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTTTACTAACCAACAAGGTTTGAAGCATAATTCATGTTCTTCTTCTAATTCTATGAAGGATTTAGAGTGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGATCAAGGAAAAAGGGTCATGAATATGAATATTTCTTCTTCTAACAACTCTTGTTCAGTTTCTCATCATCCTTATTTTGAGACTTTGAATAATAACAATCAAGGAAATAATAATAACCCTTTTCTTTATCAAGCACAAAACATTCAAAATCTTAGACAATTTGATGAACAACATAGTAGTACAAGTACTATGATGTTGAATAATCATGAGCCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAACCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTGTGATTCAAGGGTTGGTTGAAGGAGGAGGAGGAGGAGGAAGTGGGGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTGGAAGAGATGTGTGATGTTGGAAATCTTGGTGTTTGTGGTGAAAAGGTTGTTGTTGTTGCTGATTCTTCTTTGATGATGGAATCTCCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGGTCGCAATAAATCAAGATTGTTGACTATGCTTGATGAGGTTTATAAGCGGTACAGGCAATACTACCAACAGATGCAATCGGTCGTAACATCATTTGAGTATGTTTCCGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCTATGTCCAAACATTTTAGATGCTTGAAGAAGGCAATTACTGACCAACTACAGTTCAATAATAAGGCGCATTTTCACACAAGCAACCGGAAGGAAGAATCTCCAAGATTTGGCAATAGTGAAAGAGGAGGACCTTACAGCCATAGGTCAGGTTATCTTGAGCAGCAACAACCTGTATGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGCTTTTTGAACACTTTCTGCATCCCTATCCTACTGATACAGACAAAATAATGTTGGCTAAACAAACCGGTCTATCGCGTAGCCAGGTGTCAAATTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATTCACATGCTAGAAACAAGGCAAACTCCAAAAGATTCACAACAAAATGAAGAAAATTGTCGGAACAAATCAAGTGATCATCATCATCATTTGCCTTCAGATACTTCTCTAGTTTCTGAGAATCCGTCTACATCGACAGATAAGTTTCATGACACCACTTACAAGCGTGCCGTAAATGAAATTCCTGACATACCAGTTAGGAGTCAAGGACAACATCAACAACAACAACAACAACAAATGAGTCTACCTTTTCAACATGTAGGTGTTGGAATGAACATTGTTGGTAGTGGAAGCAATAATGGCAATCATAGTAATAATAATAATAATAGTAATGTGTCATTGACACTAGGACTTTATCAAAATCATGGAATTGGTTTAGCTGAACCATTTCCTCTAAGTGCAGCTCAACGATTTGGTCTTGGCCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGATGTAATTGGTGGCCAAATGTTTCATGACTTTGTAGGATGA

Protein sequence

>Msa0631200

MASDEGFEGYHVPQQSRRDKLRVIVAQNQQPHEPLLPFYDSSSFITNFTNQQGLKHNSCSSSNSMKDLECSNLMMRFSREDQGKRVMNMNISSSNNSCSVSHHPYFETLNNNNQGNNNNPFLYQAQNIQNLRQFDEQHSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGVIQGLVEGGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGNLGVCGEKVVVVADSSLMMESPLERLSEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQFNNKAHFHTSNRKEESPRFGNSERGGPYSHRSGYLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQQNEENCRNKSSDHHHHLPSDTSLVSENPSTSTDKFHDTTYKRAVNEIPDIPVRSQGQHQQQQQQQMSLPFQHVGVGMNIVGSGSNNGNHSNNNNNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGRDVIGGQMFHDFVG*