Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115000 | KEH40644.1 | 94.828 | 174 | 9 | 0 | 1 | 174 | 1 | 174 | 7.78e-111 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115000 | sp|Q9LQV2|RDR1_ARATH | 49.123 | 171 | 85 | 2 | 5 | 174 | 3 | 172 | 2.73e-50 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115000 | A0A072VF31 | 94.828 | 174 | 9 | 0 | 1 | 174 | 1 | 174 | 3.72e-111 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004640 | Msa0115000 | 0.813235 | 2.835782e-51 | -8.615850e-47 |
| Msa0008110 | Msa0115000 | 0.800629 | 1.317895e-48 | -8.615850e-47 |
| Msa0012530 | Msa0115000 | 0.948301 | 1.237521e-106 | -8.615850e-47 |
| Msa0017510 | Msa0115000 | 0.844866 | 5.797358e-59 | -8.615850e-47 |
| Msa0030180 | Msa0115000 | 0.823499 | 1.340642e-53 | -8.615850e-47 |
| Msa0034270 | Msa0115000 | 0.827681 | 1.367707e-54 | -8.615850e-47 |
| Msa0036870 | Msa0115000 | 0.815937 | 7.156232e-52 | -8.615850e-47 |
| Msa0045790 | Msa0115000 | 0.815884 | 7.355052e-52 | -8.615850e-47 |
| Msa0046160 | Msa0115000 | 0.819107 | 1.381604e-52 | -8.615850e-47 |
| Msa0047030 | Msa0115000 | 0.819537 | 1.102642e-52 | -8.615850e-47 |
| Msa0061380 | Msa0115000 | 0.937243 | 4.752492e-98 | -8.615850e-47 |
| Msa0089380 | Msa0115000 | 0.806195 | 9.253694e-50 | -8.615850e-47 |
| Msa0089630 | Msa0115000 | 0.807543 | 4.801142e-50 | -8.615850e-47 |
| Msa0094130 | Msa0115000 | 0.802785 | 4.757648e-49 | -8.615850e-47 |
| Msa0110970 | Msa0115000 | 0.817905 | 2.587243e-52 | -8.615850e-47 |
| Msa0115000 | Msa0116770 | 0.821041 | 4.986171e-53 | -8.615850e-47 |
| Msa0115000 | Msa0131900 | 0.802268 | 6.081159e-49 | -8.615850e-47 |
| Msa0115000 | Msa0139060 | 0.809557 | 1.784042e-50 | -8.615850e-47 |
| Msa0115000 | Msa0142200 | 0.802461 | 5.549525e-49 | -8.615850e-47 |
| Msa0115000 | Msa0146260 | 0.807534 | 4.822629e-50 | -8.615850e-47 |
| Msa0115000 | Msa0152430 | 0.880078 | 7.381185e-70 | -8.615850e-47 |
| Msa0115000 | Msa0157290 | 0.845127 | 4.927999e-59 | -8.615850e-47 |
| Msa0115000 | Msa0165210 | 0.828541 | 8.489280e-55 | -8.615850e-47 |
| Msa0115000 | Msa0165220 | 0.804655 | 1.946289e-49 | -8.615850e-47 |
| Msa0115000 | Msa0212990 | 0.806923 | 6.498777e-50 | -8.615850e-47 |
| Msa0115000 | Msa0213520 | 0.811837 | 5.732532e-51 | -8.615850e-47 |
| Msa0115000 | Msa0220740 | 0.803719 | 3.048595e-49 | -8.615850e-47 |
| Msa0115000 | Msa0225320 | 0.813924 | 2.000583e-51 | -8.615850e-47 |
| Msa0115000 | Msa0227470 | 0.815414 | 9.359964e-52 | -8.615850e-47 |
| Msa0115000 | Msa0237310 | 0.806352 | 8.577336e-50 | -8.615850e-47 |
| Msa0115000 | Msa0240110 | 0.836075 | 1.157474e-56 | -8.615850e-47 |
| Msa0115000 | Msa0240150 | 0.817307 | 3.529755e-52 | -8.615850e-47 |
| Msa0115000 | Msa0243100 | 0.815117 | 1.089485e-51 | -8.615850e-47 |
| Msa0115000 | Msa0261340 | 0.829218 | 5.820322e-55 | -8.615850e-47 |
| Msa0115000 | Msa0264040 | 0.813003 | 3.189440e-51 | -8.615850e-47 |
| Msa0115000 | Msa0274730 | 0.804750 | 1.859755e-49 | -8.615850e-47 |
| Msa0115000 | Msa0283450 | 0.803469 | 3.434788e-49 | -8.615850e-47 |
| Msa0115000 | Msa0292930 | 0.807861 | 4.110561e-50 | -8.615850e-47 |
| Msa0115000 | Msa0302000 | 0.834082 | 3.681945e-56 | -8.615850e-47 |
| Msa0115000 | Msa0315530 | 0.803934 | 2.750689e-49 | -8.615850e-47 |
| Msa0115000 | Msa0323610 | 0.806667 | 7.360720e-50 | -8.615850e-47 |
| Msa0115000 | Msa0330340 | 0.808673 | 2.758688e-50 | -8.615850e-47 |
| Msa0115000 | Msa0332000 | 0.803393 | 3.562177e-49 | -8.615850e-47 |
| Msa0115000 | Msa0339320 | 0.815229 | 1.028836e-51 | -8.615850e-47 |
| Msa0115000 | Msa0340090 | 0.823760 | 1.164731e-53 | -8.615850e-47 |
| Msa0115000 | Msa0344590 | 0.802382 | 5.761645e-49 | -8.615850e-47 |
| Msa0115000 | Msa0357020 | 0.806037 | 9.992520e-50 | -8.615850e-47 |
| Msa0115000 | Msa0357340 | 0.806179 | 9.327043e-50 | -8.615850e-47 |
| Msa0115000 | Msa0369850 | 0.810921 | 9.064763e-51 | -8.615850e-47 |
| Msa0115000 | Msa0376350 | 0.837277 | 5.716380e-57 | -8.615850e-47 |
| Msa0115000 | Msa0388960 | 0.829241 | 5.745312e-55 | -8.615850e-47 |
| Msa0115000 | Msa0392510 | 0.828957 | 6.735049e-55 | -8.615850e-47 |
| Msa0115000 | Msa0393080 | 0.806966 | 6.361575e-50 | -8.615850e-47 |
| Msa0115000 | Msa0395790 | 0.808423 | 3.120719e-50 | -8.615850e-47 |
| Msa0115000 | Msa0397150 | 0.804422 | 2.176434e-49 | -8.615850e-47 |
| Msa0115000 | Msa0410650 | 0.818817 | 1.607724e-52 | -8.615850e-47 |
| Msa0115000 | Msa0417880 | 0.830906 | 2.255740e-55 | -8.615850e-47 |
| Msa0115000 | Msa0424790 | 0.834160 | 3.518961e-56 | -8.615850e-47 |
| Msa0115000 | Msa0426640 | 0.800637 | 1.312405e-48 | -8.615850e-47 |
| Msa0115000 | Msa0428590 | 0.803272 | 3.773191e-49 | -8.615850e-47 |
| Msa0115000 | Msa0439970 | 0.808913 | 2.451221e-50 | -8.615850e-47 |
| Msa0115000 | Msa0452920 | 0.813335 | 2.696916e-51 | -8.615850e-47 |
| Msa0115000 | Msa0464680 | 0.807760 | 4.319269e-50 | -8.615850e-47 |
| Msa0115000 | Msa0465940 | 0.802434 | 5.620546e-49 | -8.615850e-47 |
| Msa0115000 | Msa0467430 | 0.804743 | 1.865917e-49 | -8.615850e-47 |
| Msa0115000 | Msa0468290 | 0.817395 | 3.371915e-52 | -8.615850e-47 |
| Msa0115000 | Msa0475790 | 0.806837 | 6.776558e-50 | -8.615850e-47 |
| Msa0115000 | Msa0483650 | 0.800042 | 1.735420e-48 | -8.615850e-47 |
| Msa0115000 | Msa0484650 | 0.811422 | 7.055558e-51 | -8.615850e-47 |
| Msa0115000 | Msa0484780 | 0.818054 | 2.394356e-52 | -8.615850e-47 |
| Msa0115000 | Msa0488560 | 0.825640 | 4.199439e-54 | -8.615850e-47 |
| Msa0115000 | Msa0495320 | 0.806536 | 7.844627e-50 | -8.615850e-47 |
| Msa0115000 | Msa0498060 | 0.808877 | 2.495509e-50 | -8.615850e-47 |
| Msa0115000 | Msa0503060 | 0.826526 | 2.584514e-54 | -8.615850e-47 |
| Msa0115000 | Msa0503580 | 0.802023 | 6.828789e-49 | -8.615850e-47 |
| Msa0115000 | Msa0507680 | 0.817797 | 2.736923e-52 | -8.615850e-47 |
| Msa0115000 | Msa0512900 | 0.805981 | 1.026678e-49 | -8.615850e-47 |
| Msa0115000 | Msa0516170 | 0.835705 | 1.436190e-56 | -8.615850e-47 |
| Msa0115000 | Msa0529890 | 0.805428 | 1.341415e-49 | -8.615850e-47 |
| Msa0115000 | Msa0531180 | 0.809241 | 2.085493e-50 | -8.615850e-47 |
| Msa0115000 | Msa0545210 | 0.831492 | 1.619009e-55 | -8.615850e-47 |
| Msa0115000 | Msa0546680 | 0.803312 | 3.702042e-49 | -8.615850e-47 |
| Msa0115000 | Msa0548170 | 0.806030 | 1.002330e-49 | -8.615850e-47 |
| Msa0115000 | Msa0569200 | 0.800463 | 1.424304e-48 | -8.615850e-47 |
| Msa0115000 | Msa0576880 | 0.812791 | 3.549619e-51 | -8.615850e-47 |
| Msa0115000 | Msa0585560 | 0.800869 | 1.176977e-48 | -8.615850e-47 |
| Msa0115000 | Msa0625190 | 0.800336 | 1.512106e-48 | -8.615850e-47 |
| Msa0115000 | Msa0625720 | 0.808857 | 2.519628e-50 | -8.615850e-47 |
| Msa0115000 | Msa0633700 | 0.806286 | 8.855547e-50 | -8.615850e-47 |
| Msa0115000 | Msa0643370 | 0.804926 | 1.708342e-49 | -8.615850e-47 |
| Msa0115000 | Msa0655560 | 0.810311 | 1.227587e-50 | -8.615850e-47 |
| Msa0115000 | Msa0657970 | 0.824538 | 7.646795e-54 | -8.615850e-47 |
| Msa0115000 | Msa0658240 | 0.801133 | 1.039400e-48 | -8.615850e-47 |
| Msa0115000 | Msa0661650 | 0.805231 | 1.475069e-49 | -8.615850e-47 |
| Msa0115000 | Msa0681250 | 0.803173 | 3.955478e-49 | -8.615850e-47 |
| Msa0115000 | Msa0681270 | 0.814963 | 1.178740e-51 | -8.615850e-47 |
| Msa0115000 | Msa0682550 | 0.810755 | 9.846649e-51 | -8.615850e-47 |
| Msa0115000 | Msa0685750 | 0.819902 | 9.098691e-53 | -8.615850e-47 |
| Msa0115000 | Msa0689520 | 0.801254 | 9.819719e-49 | -8.615850e-47 |
| Msa0115000 | Msa0693380 | 0.803789 | 2.948067e-49 | -8.615850e-47 |
| Msa0115000 | Msa0703050 | 0.808913 | 2.451221e-50 | -8.615850e-47 |
| Msa0115000 | Msa0730430 | 0.803077 | 4.140070e-49 | -8.615850e-47 |
| Msa0115000 | Msa0760130 | 0.800752 | 1.243865e-48 | -8.615850e-47 |
| Msa0115000 | Msa0762360 | 0.806091 | 9.733461e-50 | -8.615850e-47 |
| Msa0115000 | Msa0766580 | 0.807601 | 4.666549e-50 | -8.615850e-47 |
| Msa0115000 | Msa0779330 | 0.823248 | 1.533836e-53 | -8.615850e-47 |
| Msa0115000 | Msa0795560 | 0.802024 | 6.825139e-49 | -8.615850e-47 |
| Msa0115000 | Msa0824660 | 0.800287 | 1.546581e-48 | -8.615850e-47 |
| Msa0115000 | Msa0828560 | 0.807230 | 5.596062e-50 | -8.615850e-47 |
| Msa0115000 | Msa0832320 | 0.838570 | 2.659418e-57 | -8.615850e-47 |
| Msa0115000 | Msa0867890 | 0.802146 | 6.441523e-49 | -8.615850e-47 |
| Msa0115000 | Msa0876660 | 0.802923 | 4.455861e-49 | -8.615850e-47 |
| Msa0115000 | Msa0880140 | 0.841149 | 5.659633e-58 | -8.615850e-47 |
| Msa0115000 | Msa0880950 | 0.810955 | 8.911099e-51 | -8.615850e-47 |
| Msa0115000 | Msa0896540 | 0.805191 | 1.503717e-49 | -8.615850e-47 |
| Msa0115000 | Msa0908050 | 0.800590 | 1.341990e-48 | -8.615850e-47 |
| Msa0115000 | Msa0909120 | 0.836331 | 9.962791e-57 | -8.615850e-47 |
| Msa0115000 | Msa0909140 | 0.819009 | 1.454709e-52 | -8.615850e-47 |
| Msa0115000 | Msa0923030 | 0.803589 | 3.243954e-49 | -8.615850e-47 |
| Msa0115000 | Msa0945110 | 0.801227 | 9.946880e-49 | -8.615850e-47 |
| Msa0115000 | Msa0952120 | 0.825898 | 3.645940e-54 | -8.615850e-47 |
| Msa0115000 | Msa0954550 | 0.800425 | 1.449940e-48 | -8.615850e-47 |
| Msa0115000 | Msa0990350 | 0.807222 | 5.616221e-50 | -8.615850e-47 |
| Msa0115000 | Msa1004800 | 0.811860 | 5.666320e-51 | -8.615850e-47 |
| Msa0115000 | Msa1004840 | 0.807401 | 5.145636e-50 | -8.615850e-47 |
| Msa0115000 | Msa1007270 | 0.801687 | 8.005241e-49 | -8.615850e-47 |
| Msa0115000 | Msa1019000 | 0.803734 | 3.025918e-49 | -8.615850e-47 |
| Msa0115000 | Msa1019150 | 0.809815 | 1.570344e-50 | -8.615850e-47 |
| Msa0115000 | Msa1028330 | 0.804576 | 2.021944e-49 | -8.615850e-47 |
| Msa0115000 | Msa1029250 | 0.804007 | 2.655809e-49 | -8.615850e-47 |
| Msa0115000 | Msa1032850 | 0.820037 | 8.476450e-53 | -8.615850e-47 |
| Msa0115000 | Msa1041670 | 0.802478 | 5.505417e-49 | -8.615850e-47 |
| Msa0115000 | Msa1047080 | 0.817703 | 2.873881e-52 | -8.615850e-47 |
| Msa0115000 | Msa1081330 | 0.822037 | 2.935010e-53 | -8.615850e-47 |
| Msa0115000 | Msa1082500 | 0.830335 | 3.111226e-55 | -8.615850e-47 |
| Msa0115000 | Msa1084960 | 0.821509 | 3.888972e-53 | -8.615850e-47 |
| Msa0115000 | Msa1085200 | 0.813389 | 2.623225e-51 | -8.615850e-47 |
| Msa0115000 | Msa1097980 | 0.800497 | 1.401814e-48 | -8.615850e-47 |
| Msa0115000 | Msa1108160 | 0.818128 | 2.303402e-52 | -8.615850e-47 |
| Msa0115000 | Msa1111090 | 0.811138 | 8.131431e-51 | -8.615850e-47 |
| Msa0115000 | Msa1119940 | 0.805027 | 1.627287e-49 | -8.615850e-47 |
| Msa0115000 | Msa1142020 | 0.806119 | 9.601643e-50 | -8.615850e-47 |
| Msa0115000 | Msa1147740 | 0.812288 | 4.572266e-51 | -8.615850e-47 |
| Msa0115000 | Msa1151910 | 0.839667 | 1.381710e-57 | -8.615850e-47 |
| Msa0115000 | Msa1154690 | 0.815501 | 8.948816e-52 | -8.615850e-47 |
| Msa0115000 | Msa1154710 | 0.802831 | 4.654300e-49 | -8.615850e-47 |
| Msa0115000 | Msa1165520 | 0.825412 | 4.753855e-54 | -8.615850e-47 |
| Msa0115000 | Msa1166560 | 0.803487 | 3.405892e-49 | -8.615850e-47 |
| Msa0115000 | Msa1196440 | 0.801756 | 7.747648e-49 | -8.615850e-47 |
| Msa0115000 | Msa1199220 | 0.810629 | 1.048136e-50 | -8.615850e-47 |
| Msa0115000 | Msa1199570 | 0.823087 | 1.672713e-53 | -8.615850e-47 |
| Msa0115000 | Msa1209460 | 0.819056 | 1.419302e-52 | -8.615850e-47 |
| Msa0115000 | Msa1242220 | 0.825933 | 3.577556e-54 | -8.615850e-47 |
| Msa0115000 | Msa1269480 | 0.828128 | 1.067656e-54 | -8.615850e-47 |
| Msa0115000 | Msa1278840 | 0.812030 | 5.204348e-51 | -8.615850e-47 |
| Msa0115000 | Msa1283860 | 0.819248 | 1.283129e-52 | -8.615850e-47 |
| Msa0115000 | Msa1287440 | 0.809556 | 1.784954e-50 | -8.615850e-47 |
| Msa0115000 | Msa1297290 | 0.800807 | 1.211919e-48 | -8.615850e-47 |
| Msa0115000 | Msa1300490 | 0.804585 | 2.013328e-49 | -8.615850e-47 |
| Msa0115000 | Msa1302830 | 0.806445 | 8.197340e-50 | -8.615850e-47 |
| Msa0115000 | Msa1308380 | 0.825471 | 4.603807e-54 | -8.615850e-47 |
| Msa0115000 | Msa1313150 | 0.832768 | 7.829602e-56 | -8.615850e-47 |
| Msa0115000 | Msa1314340 | 0.801164 | 1.024511e-48 | -8.615850e-47 |
| Msa0115000 | Msa1322890 | 0.807526 | 4.842322e-50 | -8.615850e-47 |
| Msa0115000 | Msa1324550 | 0.800728 | 1.257929e-48 | -8.615850e-47 |
| Msa0115000 | Msa1328710 | 0.818948 | 1.501870e-52 | -8.615850e-47 |
| Msa0115000 | Msa1331000 | 0.802054 | 6.731417e-49 | -8.615850e-47 |
| Msa0115000 | Msa1332000 | 0.810943 | 8.962032e-51 | -8.615850e-47 |
| Msa0115000 | Msa1360060 | 0.839043 | 2.006537e-57 | -8.615850e-47 |
| Msa0115000 | Msa1369120 | 0.817099 | 3.931606e-52 | -8.615850e-47 |
| Msa0115000 | Msa1372760 | 0.834255 | 3.330699e-56 | -8.615850e-47 |
| Msa0115000 | Msa1374040 | 0.805874 | 1.081414e-49 | -8.615850e-47 |
| Msa0115000 | Msa1385000 | 0.800184 | 1.623356e-48 | -8.615850e-47 |
| Msa0115000 | Msa1402400 | 0.802699 | 4.955493e-49 | -8.615850e-47 |
| Msa0115000 | Msa1409700 | 0.811145 | 8.103126e-51 | -8.615850e-47 |
| Msa0115000 | Msa1409870 | 0.808968 | 2.385598e-50 | -8.615850e-47 |
| Msa0115000 | Msa1422420 | 0.809277 | 2.049203e-50 | -8.615850e-47 |
| Msa0115000 | Msa1423880 | 0.811245 | 7.709592e-51 | -8.615850e-47 |
| Msa0115000 | Msa1433810 | 0.803024 | 4.247098e-49 | -8.615850e-47 |
| Msa0115000 | Msa1436480 | 0.808918 | 2.445858e-50 | -8.615850e-47 |
| Msa0115000 | Msa1438250 | 0.822262 | 2.602196e-53 | -8.615850e-47 |
| Msa0115000 | Msa1451670 | 0.804270 | 2.341142e-49 | -8.615850e-47 |
| Msa0115000 | Msa1454140 | 0.809653 | 1.701732e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115000 | MtrunA17_Chr1g0161491 | 94.828 | 174 | 9 | 0 | 1 | 174 | 15 | 188 | 5.09e-112 | 343 |
| Msa0115000 | MtrunA17_Chr1g0161521 | 76.271 | 177 | 39 | 2 | 1 | 174 | 1 | 177 | 1.43e-83 | 267 |
| Msa0115000 | MtrunA17_Chr1g0161511 | 75.141 | 177 | 41 | 2 | 1 | 174 | 1 | 177 | 2.57e-82 | 263 |
| Msa0115000 | MtrunA17_Chr1g0161471 | 71.751 | 177 | 47 | 2 | 1 | 174 | 1 | 177 | 1.24e-79 | 256 |
| Msa0115000 | MtrunA17_Chr1g0161451 | 33.333 | 186 | 117 | 3 | 4 | 183 | 2 | 186 | 2.78e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115000 | AT1G14790.1 | 49.123 | 171 | 85 | 2 | 5 | 174 | 3 | 172 | 2.78e-51 | 176 |
Find 34 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGATGTTAAACTGTATTT+TGG | 0.159141 | 1_3:+33509405 | Msa0115000:CDS |
| GTGGATGCTAGTGTAGATTT+TGG | 0.172622 | 1_3:+33509468 | Msa0115000:CDS |
| AGCTTTCATATGAGAATATT+TGG | 0.191630 | 1_3:+33509550 | Msa0115000:CDS |
| GGAACTCCTATTTAAAAGTT+AGG | 0.218706 | 1_3:+33509331 | Msa0115000:CDS |
| TCCAAAGCCAAGGGCATTCT+TGG | 0.267359 | 1_3:+33509374 | Msa0115000:CDS |
| TGCAAAGTATCTATTGATTC+AGG | 0.268018 | 1_3:+33509605 | Msa0115000:CDS |
| AGGAAAGATTCTCTATATTA+TGG | 0.268444 | 1_3:+33509442 | Msa0115000:CDS |
| TCCAAGAATGCCCTTGGCTT+TGG | 0.307615 | 1_3:-33509375 | None:intergenic |
| AGTAAAACAATTGAGTTGTA+TGG | 0.346819 | 1_3:+33509114 | Msa0115000:CDS |
| TGAATAATTGCAAATGCTCT+TGG | 0.351532 | 1_3:-33509243 | None:intergenic |
| GCAGAACTAAATTGCGGTTC+GGG | 0.394506 | 1_3:+33509310 | Msa0115000:CDS |
| CTATTTAAAAGTTAGGGAAA+TGG | 0.416320 | 1_3:+33509338 | Msa0115000:CDS |
| AGCAGAACTAAATTGCGGTT+CGG | 0.428037 | 1_3:+33509309 | Msa0115000:CDS |
| ATATTTGTAGAGCATTATAC+TGG | 0.432174 | 1_3:+33509171 | Msa0115000:CDS |
| TGAGACACGTTCACAAAAGA+AGG | 0.445945 | 1_3:-33509141 | None:intergenic |
| GAACTCCTATTTAAAAGTTA+GGG | 0.447970 | 1_3:+33509332 | Msa0115000:CDS |
| TTGGGATTGGTATGAGAAAG+TGG | 0.485612 | 1_3:+33509487 | Msa0115000:CDS |
| CAATTTAGTTCTGCTAGGTA+AGG | 0.518592 | 1_3:-33509301 | None:intergenic |
| GATTGAGCTGCATCAACCAC+AGG | 0.538892 | 1_3:+33509575 | Msa0115000:CDS |
| AAACTGTCCAAGAATGCCCT+TGG | 0.565377 | 1_3:-33509381 | None:intergenic |
| GTAGAGCATTATACTGGTGA+AGG | 0.567027 | 1_3:+33509177 | Msa0115000:CDS |
| ATTCTCTATATTATGGAAGG+TGG | 0.569959 | 1_3:+33509449 | Msa0115000:CDS |
| AAGATTCTCTATATTATGGA+AGG | 0.592994 | 1_3:+33509446 | Msa0115000:CDS |
| AAAACATGCTACATTCATGA+TGG | 0.594459 | 1_3:+33509278 | Msa0115000:CDS |
| GTTGCTATGAAGATTAGAGT+AGG | 0.605906 | 1_3:+33509207 | Msa0115000:CDS |
| GAGATATTGATCCAAAGCCA+AGG | 0.607190 | 1_3:+33509364 | Msa0115000:CDS |
| TACCTAGCAGAACTAAATTG+CGG | 0.623189 | 1_3:+33509304 | Msa0115000:CDS |
| GAGACACGTTCACAAAAGAA+GGG | 0.638551 | 1_3:-33509140 | None:intergenic |
| AGATATTGATCCAAAGCCAA+GGG | 0.640291 | 1_3:+33509365 | Msa0115000:CDS |
| ATGAAGATTAGAGTAGGCAA+AGG | 0.643746 | 1_3:+33509213 | Msa0115000:CDS |
| AACCGCAATTTAGTTCTGCT+AGG | 0.654522 | 1_3:-33509306 | None:intergenic |
| ATTGAGCTGCATCAACCACA+GGG | 0.682058 | 1_3:+33509576 | Msa0115000:CDS |
| GGAAAGATTCAAGAATGACA+TGG | 0.688166 | 1_3:+33509843 | Msa0115000:intron |
| TTATACTGGTGAAGGAAGTG+TGG | 0.711055 | 1_3:+33509185 | Msa0115000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTAAAATATTTAATGAA+AGG | - | chr1_3:33509644-33509663 | None:intergenic | 10.0% |
| !!! | TGTTTAAAATATTTAATGAA+AGG | - | chr1_3:33509644-33509663 | None:intergenic | 10.0% |
| !!! | ATATCAAGAATGATTTTATC+AGG | + | chr1_3:33509822-33509841 | Msa0115000:intron | 20.0% |
| !!! | ATATCAAGAATGATTTTATC+AGG | + | chr1_3:33509822-33509841 | Msa0115000:intron | 20.0% |
| !! | AGTAAAACAATTGAGTTGTA+TGG | + | chr1_3:33509114-33509133 | Msa0115000:CDS | 25.0% |
| !! | ATATTTGTAGAGCATTATAC+TGG | + | chr1_3:33509171-33509190 | Msa0115000:CDS | 25.0% |
| ! | GAACTCCTATTTAAAAGTTA+GGG | + | chr1_3:33509332-33509351 | Msa0115000:CDS | 25.0% |
| !! | CATTTCCCTAACTTTTAAAT+AGG | - | chr1_3:33509340-33509359 | None:intergenic | 25.0% |
| ! | CTATTTAAAAGTTAGGGAAA+TGG | + | chr1_3:33509338-33509357 | Msa0115000:CDS | 25.0% |
| ! | AGGAAAGATTCTCTATATTA+TGG | + | chr1_3:33509442-33509461 | Msa0115000:CDS | 25.0% |
| ! | AAGATTCTCTATATTATGGA+AGG | + | chr1_3:33509446-33509465 | Msa0115000:CDS | 25.0% |
| !!! | GTTTGAACTTCTTATTTTCA+TGG | - | chr1_3:33509527-33509546 | None:intergenic | 25.0% |
| ! | AGCTTTCATATGAGAATATT+TGG | + | chr1_3:33509550-33509569 | Msa0115000:CDS | 25.0% |
| ! | TCCATATGAATTATGAACAA+TGG | + | chr1_3:33509754-33509773 | Msa0115000:intron | 25.0% |
| ! | ACCATTGTTCATAATTCATA+TGG | - | chr1_3:33509758-33509777 | None:intergenic | 25.0% |
| ! | ATATGAATTATGAACAATGG+TGG | + | chr1_3:33509757-33509776 | Msa0115000:intron | 25.0% |
| !! | AGTAAAACAATTGAGTTGTA+TGG | + | chr1_3:33509114-33509133 | Msa0115000:CDS | 25.0% |
| !! | ATATTTGTAGAGCATTATAC+TGG | + | chr1_3:33509171-33509190 | Msa0115000:CDS | 25.0% |
| ! | GAACTCCTATTTAAAAGTTA+GGG | + | chr1_3:33509332-33509351 | Msa0115000:CDS | 25.0% |
| !! | CATTTCCCTAACTTTTAAAT+AGG | - | chr1_3:33509340-33509359 | None:intergenic | 25.0% |
| ! | CTATTTAAAAGTTAGGGAAA+TGG | + | chr1_3:33509338-33509357 | Msa0115000:CDS | 25.0% |
| ! | AGGAAAGATTCTCTATATTA+TGG | + | chr1_3:33509442-33509461 | Msa0115000:CDS | 25.0% |
| ! | AAGATTCTCTATATTATGGA+AGG | + | chr1_3:33509446-33509465 | Msa0115000:CDS | 25.0% |
| !!! | GTTTGAACTTCTTATTTTCA+TGG | - | chr1_3:33509527-33509546 | None:intergenic | 25.0% |
| ! | AGCTTTCATATGAGAATATT+TGG | + | chr1_3:33509550-33509569 | Msa0115000:CDS | 25.0% |
| ! | TCCATATGAATTATGAACAA+TGG | + | chr1_3:33509754-33509773 | Msa0115000:intron | 25.0% |
| ! | ACCATTGTTCATAATTCATA+TGG | - | chr1_3:33509758-33509777 | None:intergenic | 25.0% |
| ! | ATATGAATTATGAACAATGG+TGG | + | chr1_3:33509757-33509776 | Msa0115000:intron | 25.0% |
| TGAATAATTGCAAATGCTCT+TGG | - | chr1_3:33509246-33509265 | None:intergenic | 30.0% | |
| AAAACATGCTACATTCATGA+TGG | + | chr1_3:33509278-33509297 | Msa0115000:CDS | 30.0% | |
| GGAACTCCTATTTAAAAGTT+AGG | + | chr1_3:33509331-33509350 | Msa0115000:CDS | 30.0% | |
| ! | GACGATGTTAAACTGTATTT+TGG | + | chr1_3:33509405-33509424 | Msa0115000:CDS | 30.0% |
| ATTCTCTATATTATGGAAGG+TGG | + | chr1_3:33509449-33509468 | Msa0115000:CDS | 30.0% | |
| !! | TGCAAAGTATCTATTGATTC+AGG | + | chr1_3:33509605-33509624 | Msa0115000:CDS | 30.0% |
| TGAATAATTGCAAATGCTCT+TGG | - | chr1_3:33509246-33509265 | None:intergenic | 30.0% | |
| AAAACATGCTACATTCATGA+TGG | + | chr1_3:33509278-33509297 | Msa0115000:CDS | 30.0% | |
| GGAACTCCTATTTAAAAGTT+AGG | + | chr1_3:33509331-33509350 | Msa0115000:CDS | 30.0% | |
| ! | GACGATGTTAAACTGTATTT+TGG | + | chr1_3:33509405-33509424 | Msa0115000:CDS | 30.0% |
| ATTCTCTATATTATGGAAGG+TGG | + | chr1_3:33509449-33509468 | Msa0115000:CDS | 30.0% | |
| !! | TGCAAAGTATCTATTGATTC+AGG | + | chr1_3:33509605-33509624 | Msa0115000:CDS | 30.0% |
| GTTGCTATGAAGATTAGAGT+AGG | + | chr1_3:33509207-33509226 | Msa0115000:CDS | 35.0% | |
| ATGAAGATTAGAGTAGGCAA+AGG | + | chr1_3:33509213-33509232 | Msa0115000:CDS | 35.0% | |
| !! | CAATTTAGTTCTGCTAGGTA+AGG | - | chr1_3:33509304-33509323 | None:intergenic | 35.0% |
| TACCTAGCAGAACTAAATTG+CGG | + | chr1_3:33509304-33509323 | Msa0115000:CDS | 35.0% | |
| AGATATTGATCCAAAGCCAA+GGG | + | chr1_3:33509365-33509384 | Msa0115000:CDS | 35.0% | |
| ! | TGGATGCTAGTGTAGATTTT+GGG | + | chr1_3:33509469-33509488 | Msa0115000:CDS | 35.0% |
| GGAAAGATTCAAGAATGACA+TGG | + | chr1_3:33509843-33509862 | Msa0115000:intron | 35.0% | |
| GTTGCTATGAAGATTAGAGT+AGG | + | chr1_3:33509207-33509226 | Msa0115000:CDS | 35.0% | |
| ATGAAGATTAGAGTAGGCAA+AGG | + | chr1_3:33509213-33509232 | Msa0115000:CDS | 35.0% | |
| !! | CAATTTAGTTCTGCTAGGTA+AGG | - | chr1_3:33509304-33509323 | None:intergenic | 35.0% |
| TACCTAGCAGAACTAAATTG+CGG | + | chr1_3:33509304-33509323 | Msa0115000:CDS | 35.0% | |
| AGATATTGATCCAAAGCCAA+GGG | + | chr1_3:33509365-33509384 | Msa0115000:CDS | 35.0% | |
| ! | TGGATGCTAGTGTAGATTTT+GGG | + | chr1_3:33509469-33509488 | Msa0115000:CDS | 35.0% |
| GGAAAGATTCAAGAATGACA+TGG | + | chr1_3:33509843-33509862 | Msa0115000:intron | 35.0% | |
| GAGACACGTTCACAAAAGAA+GGG | - | chr1_3:33509143-33509162 | None:intergenic | 40.0% | |
| TGAGACACGTTCACAAAAGA+AGG | - | chr1_3:33509144-33509163 | None:intergenic | 40.0% | |
| ! | GTAGAGCATTATACTGGTGA+AGG | + | chr1_3:33509177-33509196 | Msa0115000:CDS | 40.0% |
| TTATACTGGTGAAGGAAGTG+TGG | + | chr1_3:33509185-33509204 | Msa0115000:CDS | 40.0% | |
| !! | AACCGCAATTTAGTTCTGCT+AGG | - | chr1_3:33509309-33509328 | None:intergenic | 40.0% |
| AGCAGAACTAAATTGCGGTT+CGG | + | chr1_3:33509309-33509328 | Msa0115000:CDS | 40.0% | |
| GAGATATTGATCCAAAGCCA+AGG | + | chr1_3:33509364-33509383 | Msa0115000:CDS | 40.0% | |
| !! | TTTTGGCTGTCAGATCTCAA+AGG | + | chr1_3:33509422-33509441 | Msa0115000:CDS | 40.0% |
| ! | GTGGATGCTAGTGTAGATTT+TGG | + | chr1_3:33509468-33509487 | Msa0115000:CDS | 40.0% |
| !!! | GCTAGTGTAGATTTTGGGAT+TGG | + | chr1_3:33509474-33509493 | Msa0115000:CDS | 40.0% |
| ! | TTGGGATTGGTATGAGAAAG+TGG | + | chr1_3:33509487-33509506 | Msa0115000:CDS | 40.0% |
| ! | TACTTTGCAGTTTTACCCTG+TGG | - | chr1_3:33509594-33509613 | None:intergenic | 40.0% |
| GAGACACGTTCACAAAAGAA+GGG | - | chr1_3:33509143-33509162 | None:intergenic | 40.0% | |
| TGAGACACGTTCACAAAAGA+AGG | - | chr1_3:33509144-33509163 | None:intergenic | 40.0% | |
| ! | GTAGAGCATTATACTGGTGA+AGG | + | chr1_3:33509177-33509196 | Msa0115000:CDS | 40.0% |
| TTATACTGGTGAAGGAAGTG+TGG | + | chr1_3:33509185-33509204 | Msa0115000:CDS | 40.0% | |
| !! | AACCGCAATTTAGTTCTGCT+AGG | - | chr1_3:33509309-33509328 | None:intergenic | 40.0% |
| AGCAGAACTAAATTGCGGTT+CGG | + | chr1_3:33509309-33509328 | Msa0115000:CDS | 40.0% | |
| GAGATATTGATCCAAAGCCA+AGG | + | chr1_3:33509364-33509383 | Msa0115000:CDS | 40.0% | |
| !! | TTTTGGCTGTCAGATCTCAA+AGG | + | chr1_3:33509422-33509441 | Msa0115000:CDS | 40.0% |
| ! | GTGGATGCTAGTGTAGATTT+TGG | + | chr1_3:33509468-33509487 | Msa0115000:CDS | 40.0% |
| !!! | GCTAGTGTAGATTTTGGGAT+TGG | + | chr1_3:33509474-33509493 | Msa0115000:CDS | 40.0% |
| ! | TTGGGATTGGTATGAGAAAG+TGG | + | chr1_3:33509487-33509506 | Msa0115000:CDS | 40.0% |
| ! | TACTTTGCAGTTTTACCCTG+TGG | - | chr1_3:33509594-33509613 | None:intergenic | 40.0% |
| GCAGAACTAAATTGCGGTTC+GGG | + | chr1_3:33509310-33509329 | Msa0115000:CDS | 45.0% | |
| AAACTGTCCAAGAATGCCCT+TGG | - | chr1_3:33509384-33509403 | None:intergenic | 45.0% | |
| ATTGAGCTGCATCAACCACA+GGG | + | chr1_3:33509576-33509595 | Msa0115000:CDS | 45.0% | |
| GCAGAACTAAATTGCGGTTC+GGG | + | chr1_3:33509310-33509329 | Msa0115000:CDS | 45.0% | |
| AAACTGTCCAAGAATGCCCT+TGG | - | chr1_3:33509384-33509403 | None:intergenic | 45.0% | |
| ATTGAGCTGCATCAACCACA+GGG | + | chr1_3:33509576-33509595 | Msa0115000:CDS | 45.0% | |
| !!! | AACAAAATTTAAAATAAAAA+AGG | - | chr1_3:33509681-33509700 | None:intergenic | 5.0% |
| !!! | TAATAGATATATATATTTTT+AGG | + | chr1_3:33509789-33509808 | Msa0115000:intron | 5.0% |
| !!! | AACAAAATTTAAAATAAAAA+AGG | - | chr1_3:33509681-33509700 | None:intergenic | 5.0% |
| !!! | TAATAGATATATATATTTTT+AGG | + | chr1_3:33509789-33509808 | Msa0115000:intron | 5.0% |
| !! | TCCAAAGCCAAGGGCATTCT+TGG | + | chr1_3:33509374-33509393 | Msa0115000:CDS | 50.0% |
| TCCAAGAATGCCCTTGGCTT+TGG | - | chr1_3:33509378-33509397 | None:intergenic | 50.0% | |
| GATTGAGCTGCATCAACCAC+AGG | + | chr1_3:33509575-33509594 | Msa0115000:CDS | 50.0% | |
| !! | TCCAAAGCCAAGGGCATTCT+TGG | + | chr1_3:33509374-33509393 | Msa0115000:CDS | 50.0% |
| TCCAAGAATGCCCTTGGCTT+TGG | - | chr1_3:33509378-33509397 | None:intergenic | 50.0% | |
| GATTGAGCTGCATCAACCAC+AGG | + | chr1_3:33509575-33509594 | Msa0115000:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33509105 | 33509873 | 33509105 | ID=Msa0115000;Name=Msa0115000 |
| chr1_3 | mRNA | 33509105 | 33509873 | 33509105 | ID=Msa0115000-mRNA-1;Parent=Msa0115000;Name=Msa0115000-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|183 |
| chr1_3 | exon | 33509105 | 33509626 | 33509105 | ID=Msa0115000-mRNA-1:exon:10507;Parent=Msa0115000-mRNA-1 |
| chr1_3 | exon | 33509844 | 33509873 | 33509844 | ID=Msa0115000-mRNA-1:exon:10508;Parent=Msa0115000-mRNA-1 |
| chr1_3 | CDS | 33509105 | 33509626 | 33509105 | ID=Msa0115000-mRNA-1:cds;Parent=Msa0115000-mRNA-1 |
| chr1_3 | CDS | 33509844 | 33509873 | 33509844 | ID=Msa0115000-mRNA-1:cds;Parent=Msa0115000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
