AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1016580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016580 MtrunA17_Chr7g0231891 95.000 140 7 0 60 199 1 140 3.00e-95 273
Msa1016580 MtrunA17_Chr7g0231901 92.500 40 3 0 8 47 9 48 1.25e-18 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016580 AT4G00030.1 74.138 174 45 0 26 199 36 209 2.40e-95 276

Find 78 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCTTGGTGGGGTTGTTT+TGG 0.193274 7_1:+33527485 None:intergenic
CTCTCATTCTTTCCAGTTAT+AGG 0.262596 7_1:+33522920 None:intergenic
CTTTGCACTTAACTAGTCTT+TGG 0.275001 7_1:-33522819 Msa1016580:three_prime_UTR
TTCGAGTTGCAAAGGATATC+AGG 0.283632 7_1:-33522971 Msa1016580:CDS
ATTGAGAAGGCTGGCTTGTT+TGG 0.287312 7_1:-33527340 Msa1016580:CDS
GTTTGAGAGGTGAATGGGTT+GGG 0.289062 7_1:+33527580 None:intergenic
TTTCTACTCAACTGCCTCTA+TGG 0.328123 7_1:-33522854 Msa1016580:three_prime_UTR
CGGCAACTTGGCGGTTGCTC+TGG 0.343170 7_1:-33527390 Msa1016580:CDS
GGTGATTGAGTTTAGTTTCA+TGG 0.343408 7_1:+33527655 None:intergenic
TGTTATATCTTTCATTCTGC+TGG 0.367200 7_1:+33522580 None:intergenic
GTTGAAAGAGTACAAGATTC+AGG 0.368354 7_1:+33522602 None:intergenic
TCGACCGAGCTTCCTATAAC+TGG 0.375626 7_1:-33522932 Msa1016580:CDS
CAGTGTTACGTGGAAAGAAC+TGG 0.383547 7_1:-33525896 Msa1016580:CDS
ATGGGAATGTGTGGTGGTGG+TGG 0.384123 7_1:+33527634 None:intergenic
GGGTCTTGAGGCCACGGTCT+TGG 0.384643 7_1:+33527506 None:intergenic
GAAGAAAAGGGAAGTGGTGG+TGG 0.399827 7_1:+33527603 None:intergenic
TGAATGGGTTGGGGAAGAAA+AGG 0.412186 7_1:+33527590 None:intergenic
GGCTTGTTTGGAACTAAAGC+TGG 0.432776 7_1:-33527328 Msa1016580:CDS
GTCGAATATTGAAGTTGCTT+CGG 0.436707 7_1:-33527221 Msa1016580:CDS
GCCATGGGAATGTGTGGTGG+TGG 0.441355 7_1:+33527631 None:intergenic
TTGTTGGTTTGAGAGGTGAA+TGG 0.445219 7_1:+33527574 None:intergenic
ATCGATGCAATGGCCGAGCT+TGG 0.446962 7_1:-33527445 Msa1016580:CDS
GGTTTGAGAGGTGAATGGGT+TGG 0.448628 7_1:+33527579 None:intergenic
AAGGGAAGTGGTGGTGGTGG+TGG 0.451258 7_1:+33527609 None:intergenic
AACGATCGATGCTAGCTTGG+TGG 0.460174 7_1:+33527474 None:intergenic
ACGATCGATGCTAGCTTGGT+GGG 0.461219 7_1:+33527475 None:intergenic
TACTGTACCGGTGCCAAGCT+CGG 0.464081 7_1:+33527432 None:intergenic
GAATGGGTTGGGGAAGAAAA+GGG 0.466912 7_1:+33527591 None:intergenic
GTGTGTGGAGGGAGTGAGCT+TGG 0.470046 7_1:+33527703 None:intergenic
GAAAAGGGAAGTGGTGGTGG+TGG 0.471337 7_1:+33527606 None:intergenic
TGTTGGTTTGAGAGGTGAAT+GGG 0.471455 7_1:+33527575 None:intergenic
CTGTTCATCATTGAGAAGGC+TGG 0.471690 7_1:-33527349 Msa1016580:CDS
ACCATTGCCACCATTCGGAC+AGG 0.473527 7_1:-33525868 Msa1016580:CDS
TTTGAGAGGTGAATGGGTTG+GGG 0.487758 7_1:+33527581 None:intergenic
GCAACCGCCAAGTTGCCGAC+AGG 0.496085 7_1:+33527395 None:intergenic
CTTTCCAGTTATAGGAAGCT+CGG 0.498636 7_1:+33522928 None:intergenic
GGGGAAGAAAAGGGAAGTGG+TGG 0.500931 7_1:+33527600 None:intergenic
GTGGCCATGGGAATGTGTGG+TGG 0.507585 7_1:+33527628 None:intergenic
GTGGTGGCCATGGGAATGTG+TGG 0.511323 7_1:+33527625 None:intergenic
CCCTGTCCGAATGGTGGCAA+TGG 0.513481 7_1:+33525867 None:intergenic
GAAATACCATTGCCACCATT+CGG 0.514466 7_1:-33525873 Msa1016580:CDS
ATTCCCTGTCGGCAACTTGG+CGG 0.514923 7_1:-33527399 Msa1016580:CDS
ATCACCTGTGGTTACTGTAC+CGG 0.515371 7_1:+33527420 None:intergenic
GTGATTCCCTGTCGGCAACT+TGG 0.516351 7_1:-33527402 Msa1016580:CDS
CATTAAAGAAGACAAACAAA+TGG 0.527590 7_1:+33522882 None:intergenic
GTTGGGGAAGAAAAGGGAAG+TGG 0.533661 7_1:+33527597 None:intergenic
CGAACAAAGAAAACACCATC+AGG 0.535192 7_1:+33527244 None:intergenic
CAACCGCCAAGTTGCCGACA+GGG 0.535418 7_1:+33527396 None:intergenic
CACGGTCTTGGTCAGAGATG+AGG 0.542439 7_1:+33527518 None:intergenic
GGTAACGATCGATGCTAGCT+TGG 0.545911 7_1:+33527471 None:intergenic
TCGAGTTGCAAAGGATATCA+GGG 0.552456 7_1:-33522970 Msa1016580:CDS
ACGGTCTTGGTCAGAGATGA+GGG 0.570760 7_1:+33527519 None:intergenic
GCAATGGCCGAGCTTGGCAC+CGG 0.572480 7_1:-33527439 Msa1016580:CDS
TGCCACCATTCGGACAGGGT+TGG 0.580620 7_1:-33525863 Msa1016580:intron
CGATCGATGCTAGCTTGGTG+GGG 0.580899 7_1:+33527476 None:intergenic
CTATAACTGGAAAGAATGAG+AGG 0.590449 7_1:-33522919 Msa1016580:exon
TGATATCCTTTGCAACTCGA+AGG 0.591269 7_1:+33522973 None:intergenic
CGTTACCGCGATCGATGCAA+TGG 0.591819 7_1:-33527455 Msa1016580:CDS
ACCACCACCACACATTCCCA+TGG 0.596059 7_1:-33527632 Msa1016580:exon
CCATTGCCACCATTCGGACA+GGG 0.598795 7_1:-33525867 Msa1016580:CDS
TGATGACCTTCGAGTTGCAA+AGG 0.605710 7_1:-33522979 Msa1016580:CDS
TTTACGAGTGCAGTGTTACG+TGG 0.607226 7_1:-33525906 Msa1016580:CDS
AGACATAATTGATACCATAG+AGG 0.607702 7_1:+33522840 None:intergenic
GCAGCTGTTCATCATTGAGA+AGG 0.611613 7_1:-33527353 Msa1016580:CDS
CTTGGTCAGAGATGAGGGTG+AGG 0.611807 7_1:+33527524 None:intergenic
ACTTACCAACCCTGTCCGAA+TGG 0.612493 7_1:+33525858 None:intergenic
ACAAACAATATGATATACAA+AGG 0.628535 7_1:+33522704 None:intergenic
GTTGCTCTGGACTACTGAGA+AGG 0.629747 7_1:-33527377 Msa1016580:CDS
TACCAACCCTGTCCGAATGG+TGG 0.629823 7_1:+33525861 None:intergenic
GGCACCGGTACAGTAACCAC+AGG 0.633722 7_1:-33527424 Msa1016580:CDS
GGTCAGAGATGAGGGTGAGG+AGG 0.635921 7_1:+33527527 None:intergenic
AGTGTTACGTGGAAAGAACT+GGG 0.637752 7_1:-33525895 Msa1016580:CDS
CTCGGCCATTGCATCGATCG+CGG 0.641696 7_1:+33527450 None:intergenic
TGCCGACAGGGAATCACCTG+TGG 0.657281 7_1:+33527408 None:intergenic
AACCACAGGTGATTCCCTGT+CGG 0.661555 7_1:-33527410 Msa1016580:CDS
CGAGTTGCAAAGGATATCAG+GGG 0.685935 7_1:-33522969 Msa1016580:CDS
CTCATCTCTGACCAAGACCG+TGG 0.686718 7_1:-33527517 Msa1016580:CDS
CAACTCGAAGGTCATCATCG+AGG 0.731436 7_1:+33522985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATTAATTTTGATTT+TGG - chr7_1:33523171-33523190 Msa1016580:intron 10.0%
!! CAATTTGATAAAAAAAAAAA+AGG + chr7_1:33527061-33527080 None:intergenic 10.0%
!! ATATTAATAATAAGACCAAT+TGG + chr7_1:33523528-33523547 None:intergenic 15.0%
!!! TTGCATTCTTTTTTTTTTTT+TGG + chr7_1:33524252-33524271 None:intergenic 15.0%
!! GTTATGAATCAAAATTAATT+TGG - chr7_1:33524306-33524325 Msa1016580:intron 15.0%
!! ATAATTATAGTTGAAACTTT+AGG - chr7_1:33524745-33524764 Msa1016580:intron 15.0%
!! TACAAAATTACCTTAAAATT+TGG - chr7_1:33524829-33524848 Msa1016580:intron 15.0%
!!! TGCAAAATATTAGATTTTAT+TGG - chr7_1:33526463-33526482 Msa1016580:intron 15.0%
!! TACAATTTATTAATAACCAA+AGG + chr7_1:33526534-33526553 None:intergenic 15.0%
!! TTTGGTTATTAATAAATTGT+AGG - chr7_1:33526533-33526552 Msa1016580:intron 15.0%
!! TTGGTTATTAATAAATTGTA+GGG - chr7_1:33526534-33526553 Msa1016580:intron 15.0%
!!! AATTTTGATTTTGGTTTAAC+TGG - chr7_1:33523180-33523199 Msa1016580:intron 20.0%
!! AACATTAGATATGTAATGTT+GGG + chr7_1:33523468-33523487 None:intergenic 20.0%
!! AAACATTAGATATGTAATGT+TGG + chr7_1:33523469-33523488 None:intergenic 20.0%
!! TTACATATCTAATGTTTAAG+CGG - chr7_1:33523472-33523491 Msa1016580:intron 20.0%
!! CAAAATTTATAGAACTCAAA+TGG + chr7_1:33523967-33523986 None:intergenic 20.0%
!!! CATTTGAGTTCTATAAATTT+TGG - chr7_1:33523965-33523984 Msa1016580:intron 20.0%
!! CAATTTATTGTTTATACAGA+TGG + chr7_1:33524567-33524586 None:intergenic 20.0%
!! AAATAGTGCTTATAAAGTTT+GGG + chr7_1:33524903-33524922 None:intergenic 20.0%
!! TAAATAGTGCTTATAAAGTT+TGG + chr7_1:33524904-33524923 None:intergenic 20.0%
!! ATTAAGGTAGGAAAAAATAT+AGG - chr7_1:33525047-33525066 Msa1016580:intron 20.0%
!!! CTCACAAATTTTTCTTAAAA+GGG + chr7_1:33525177-33525196 None:intergenic 20.0%
!!! TTGGAAATAATTTTTCAGAA+CGG - chr7_1:33525652-33525671 Msa1016580:intron 20.0%
!! TTACAATAATATACTTGAAG+AGG - chr7_1:33526930-33526949 Msa1016580:intron 20.0%
!! ACAAACAATATGATATACAA+AGG + chr7_1:33527601-33527620 None:intergenic 20.0%
! AATTCATACATTAGGTGTTT+AGG - chr7_1:33523405-33523424 Msa1016580:intron 25.0%
! ACATTAGATATGTAATGTTG+GGG + chr7_1:33523467-33523486 None:intergenic 25.0%
! GTATAAATGAACTTTGTCAA+AGG + chr7_1:33523895-33523914 None:intergenic 25.0%
! TTGACAAAGTTCATTTATAC+AGG - chr7_1:33523895-33523914 Msa1016580:intron 25.0%
! TGACAAAGTTCATTTATACA+GGG - chr7_1:33523896-33523915 Msa1016580:intron 25.0%
! TTGATACCTATTGAAATTAC+GGG + chr7_1:33524076-33524095 None:intergenic 25.0%
! CTTGATACCTATTGAAATTA+CGG + chr7_1:33524077-33524096 None:intergenic 25.0%
! TACCTGTGAAAACTAATATT+TGG - chr7_1:33524363-33524382 Msa1016580:intron 25.0%
!! TAGGTCTAATCCAAATTTTA+AGG + chr7_1:33524842-33524861 None:intergenic 25.0%
!! CCTCACAAATTTTTCTTAAA+AGG + chr7_1:33525178-33525197 None:intergenic 25.0%
!!! CCTTTTAAGAAAAATTTGTG+AGG - chr7_1:33525175-33525194 Msa1016580:intron 25.0%
! TCTCATGGTAATAATACTTT+GGG - chr7_1:33525218-33525237 Msa1016580:intron 25.0%
! AATGACAGATTACATTATGT+CGG - chr7_1:33525242-33525261 Msa1016580:intron 25.0%
! CAAAAATGACTAAAATACGT+TGG + chr7_1:33525635-33525654 None:intergenic 25.0%
!!! CAACGTATTTTAGTCATTTT+TGG - chr7_1:33525633-33525652 Msa1016580:intron 25.0%
!!! AAATAATTTTTCAGAACGGA+AGG - chr7_1:33525656-33525675 Msa1016580:intron 25.0%
!!! AATAATTTTTCAGAACGGAA+GGG - chr7_1:33525657-33525676 Msa1016580:intron 25.0%
!!! ATTTGGTGATGAAACAAATA+TGG - chr7_1:33526134-33526153 Msa1016580:intron 25.0%
!!! TAGATTTTATTGGTTTTAGC+CGG - chr7_1:33526473-33526492 Msa1016580:intron 25.0%
!!! CTCTTATTTATCTTTTCCTT+TGG - chr7_1:33526515-33526534 Msa1016580:intron 25.0%
!! TTTTGACAAAGATTACTTTG+AGG + chr7_1:33526619-33526638 None:intergenic 25.0%
! ATAGAGAAACATCTTTATTG+AGG + chr7_1:33526967-33526986 None:intergenic 25.0%
! ATTTATGATCGTAAAACTAC+TGG + chr7_1:33527127-33527146 None:intergenic 25.0%
!! CATTTTGCTAAAAACAATCA+AGG + chr7_1:33527203-33527222 None:intergenic 25.0%
! CATTAAAGAAGACAAACAAA+TGG + chr7_1:33527423-33527442 None:intergenic 25.0%
!! GTTATTACTTTTACTCCTGA+TGG - chr7_1:33523043-33523062 Msa1016580:intron 30.0%
GTTACGAGAATTCATACATT+AGG - chr7_1:33523397-33523416 Msa1016580:intron 30.0%
TTTCTGATGAACTTGAACAT+TGG - chr7_1:33523748-33523767 Msa1016580:intron 30.0%
ATAACAATGTCAAGCTTGAA+GGG + chr7_1:33523823-33523842 None:intergenic 30.0%
TATAACAATGTCAAGCTTGA+AGG + chr7_1:33523824-33523843 None:intergenic 30.0%
TGATACCTATTGAAATTACG+GGG + chr7_1:33524075-33524094 None:intergenic 30.0%
CGTAATTTCAATAGGTATCA+AGG - chr7_1:33524075-33524094 Msa1016580:intron 30.0%
!!! GACCAAATATTAGTTTTCAC+AGG + chr7_1:33524368-33524387 None:intergenic 30.0%
AGTATTATTACCATGAGACT+CGG + chr7_1:33525216-33525235 None:intergenic 30.0%
GTCTCATGGTAATAATACTT+TGG - chr7_1:33525217-33525236 Msa1016580:intron 30.0%
CTCATGGTAATAATACTTTG+GGG - chr7_1:33525219-33525238 Msa1016580:intron 30.0%
GAGTTTCTTAATCCATATAC+TGG - chr7_1:33525283-33525302 Msa1016580:intron 30.0%
!!! TATCAAGTTTTTTCACCTGA+GGG - chr7_1:33525365-33525384 Msa1016580:intron 30.0%
AATCTATGTCGATATCTTCT+CGG + chr7_1:33525430-33525449 None:intergenic 30.0%
GATATCGACATAGATTTCAT+AGG - chr7_1:33525434-33525453 Msa1016580:intron 30.0%
GTTCAGAACAACAAAATACT+TGG - chr7_1:33525774-33525793 Msa1016580:intron 30.0%
AGAACAACAAAATACTTGGA+CGG - chr7_1:33525778-33525797 Msa1016580:intron 30.0%
TAAACCATCCAAAATTCAAG+TGG - chr7_1:33526020-33526039 Msa1016580:intron 30.0%
AAACCATCCAAAATTCAAGT+GGG - chr7_1:33526021-33526040 Msa1016580:intron 30.0%
GGAAATAATACAAGTGGAAA+AGG + chr7_1:33526570-33526589 None:intergenic 30.0%
AAGGATGGAAATAATACAAG+TGG + chr7_1:33526576-33526595 None:intergenic 30.0%
!! TTACTTTGAGGTGTATAAGA+TGG + chr7_1:33526607-33526626 None:intergenic 30.0%
ATGCTACTACAAATGATGAA+AGG + chr7_1:33526839-33526858 None:intergenic 30.0%
TTCCTCTATGTGCTATAAAT+TGG + chr7_1:33526898-33526917 None:intergenic 30.0%
!! TGATCTTTACTGATAATGGT+TGG + chr7_1:33526994-33527013 None:intergenic 30.0%
! GCATTGATCTTTACTGATAA+TGG + chr7_1:33526998-33527017 None:intergenic 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr7_1:33527052-33527071 None:intergenic 30.0%
!! GATCATAAATCTTAGCTTTG+TGG - chr7_1:33527137-33527156 Msa1016580:intron 30.0%
GGTGTAGAAAAAGGTAAAAT+GGG + chr7_1:33527182-33527201 None:intergenic 30.0%
AGGTGTAGAAAAAGGTAAAA+TGG + chr7_1:33527183-33527202 None:intergenic 30.0%
AACAATCAAGGTGTAGAAAA+AGG + chr7_1:33527191-33527210 None:intergenic 30.0%
!!! TAGTTGCATCTTGTTTTTGT+AGG - chr7_1:33527280-33527299 Msa1016580:CDS 30.0%
AGACATAATTGATACCATAG+AGG + chr7_1:33527465-33527484 None:intergenic 30.0%
! ATCTAATCTGTATTTTGCAC+TGG + chr7_1:33527657-33527676 None:intergenic 30.0%
!!! TTGTGTGAGTTTTTAGTGTG+TGG + chr7_1:33522617-33522636 None:intergenic 35.0%
! GGTGATTGAGTTTAGTTTCA+TGG + chr7_1:33522650-33522669 None:intergenic 35.0%
!!! TCTTTTGTTGTTGGTTTGAG+AGG + chr7_1:33522738-33522757 None:intergenic 35.0%
! TAAAGCTGGAGATGTTTTAC+AGG - chr7_1:33522988-33523007 Msa1016580:CDS 35.0%
!! CTGATGGTGTTTTCTTTGTT+CGG - chr7_1:33523059-33523078 Msa1016580:intron 35.0%
GTCGAATATTGAAGTTGCTT+CGG - chr7_1:33523081-33523100 Msa1016580:intron 35.0%
! TCAACATTGCTTGTTGAGTT+AGG - chr7_1:33523315-33523334 Msa1016580:intron 35.0%
!! GTGTTTAGGTGTTGAGAAAT+GGG - chr7_1:33523419-33523438 Msa1016580:intron 35.0%
!! TGTTTAGGTGTTGAGAAATG+GGG - chr7_1:33523420-33523439 Msa1016580:intron 35.0%
AAAACCTACCTAGAGATTCA+AGG + chr7_1:33523663-33523682 None:intergenic 35.0%
TAACAATGTCAAGCTTGAAG+GGG + chr7_1:33523822-33523841 None:intergenic 35.0%
ACCACTCATGTCTTAAAACA+TGG - chr7_1:33523862-33523881 Msa1016580:intron 35.0%
CCACTCATGTCTTAAAACAT+GGG - chr7_1:33523863-33523882 Msa1016580:intron 35.0%
! ATTTATACAGGGCATTAGAG+AGG - chr7_1:33523907-33523926 Msa1016580:intron 35.0%
! TTTATACAGGGCATTAGAGA+GGG - chr7_1:33523908-33523927 Msa1016580:intron 35.0%
! ATTAGAGAGGGATGTCTTTT+AGG - chr7_1:33523920-33523939 Msa1016580:intron 35.0%
GGATTAAACTATCAACCACT+TGG + chr7_1:33524108-33524127 None:intergenic 35.0%
CCAACTGAGCTATATTTACT+GGG + chr7_1:33524129-33524148 None:intergenic 35.0%
ACCAACTGAGCTATATTTAC+TGG + chr7_1:33524130-33524149 None:intergenic 35.0%
! ACGTGTCACTGTGTAAAATT+TGG - chr7_1:33524276-33524295 Msa1016580:intron 35.0%
CTGTGTAAAATTTGGTAGAC+TGG - chr7_1:33524284-33524303 Msa1016580:intron 35.0%
AAGTGGAGCAATTATGATAG+TGG - chr7_1:33524711-33524730 Msa1016580:intron 35.0%
TCTTAAAAGCCAGTGTTGTA+AGG + chr7_1:33524871-33524890 None:intergenic 35.0%
TTCCACATTGTCTAGAGATT+TGG + chr7_1:33524929-33524948 None:intergenic 35.0%
CTAGGAGCAGATTACAATTA+AGG - chr7_1:33525031-33525050 Msa1016580:intron 35.0%
GAGCAGATTACAATTAAGGT+AGG - chr7_1:33525035-33525054 Msa1016580:intron 35.0%
TAAATCCGAAAGAGATCTCT+TGG - chr7_1:33525097-33525116 Msa1016580:intron 35.0%
TGAACTCCATTGAAGAAGAA+TGG - chr7_1:33525143-33525162 Msa1016580:intron 35.0%
TTGTTGCCATTCTTCTTCAA+TGG + chr7_1:33525152-33525171 None:intergenic 35.0%
AAAATTTGTGAGGATCTGCA+TGG - chr7_1:33525185-33525204 Msa1016580:intron 35.0%
AAATTTGTGAGGATCTGCAT+GGG - chr7_1:33525186-33525205 Msa1016580:intron 35.0%
GTATTATTACCATGAGACTC+GGG + chr7_1:33525215-33525234 None:intergenic 35.0%
! TCTTAATCCATATACTGGCT+AGG - chr7_1:33525288-33525307 Msa1016580:intron 35.0%
TTATATGCCTAGCCAGTATA+TGG + chr7_1:33525298-33525317 None:intergenic 35.0%
!!! GTATCAAGTTTTTTCACCTG+AGG - chr7_1:33525364-33525383 Msa1016580:intron 35.0%
! ATGTCATTTGAAGTAGGCAA+CGG + chr7_1:33525407-33525426 None:intergenic 35.0%
GAAGTCTGCCTAAATCAAAA+GGG - chr7_1:33525456-33525475 Msa1016580:intron 35.0%
!!! GCATCAAACCCTTTTGATTT+AGG + chr7_1:33525467-33525486 None:intergenic 35.0%
!! AAAAGGGTTTGATGCCATTT+TGG - chr7_1:33525472-33525491 Msa1016580:intron 35.0%
!! GTTAATCGGTTTGGCAAATA+CGG - chr7_1:33525506-33525525 Msa1016580:intron 35.0%
!! TTAATCGGTTTGGCAAATAC+GGG - chr7_1:33525507-33525526 Msa1016580:intron 35.0%
GATGAATACACCTTATCATC+CGG - chr7_1:33525691-33525710 Msa1016580:intron 35.0%
! GAACTTTGGAAACTTACTTG+AGG - chr7_1:33525744-33525763 Msa1016580:intron 35.0%
!! TTGGACGGTTTTATACCATT+GGG - chr7_1:33525793-33525812 Msa1016580:intron 35.0%
TATACCATTGGGATGAACAA+TGG - chr7_1:33525804-33525823 Msa1016580:intron 35.0%
! CTCTAGCCATATTTGTTTCT+AGG - chr7_1:33525880-33525899 Msa1016580:CDS 35.0%
GGCTTTCCTAGAAACAAATA+TGG + chr7_1:33525889-33525908 None:intergenic 35.0%
TTGTTTGAAAGCTTCATCTC+TGG + chr7_1:33525943-33525962 None:intergenic 35.0%
CAAAATTCAAGTGGGTGATT+GGG - chr7_1:33526029-33526048 Msa1016580:intron 35.0%
! AAATTCCTAGCTGTCAGTTT+TGG + chr7_1:33526118-33526137 None:intergenic 35.0%
AAAACTGACAGCTAGGAATT+TGG - chr7_1:33526117-33526136 Msa1016580:intron 35.0%
TTTAGGAAGATGCAGTTGAA+AGG + chr7_1:33526167-33526186 None:intergenic 35.0%
AGTTGTATACGTGCTTCTTT+AGG + chr7_1:33526184-33526203 None:intergenic 35.0%
AGGAGAAGGTTGAATTAGAA+GGG - chr7_1:33526338-33526357 Msa1016580:intron 35.0%
GTTGTTCGAATTTCTGTCTT+AGG - chr7_1:33526367-33526386 Msa1016580:intron 35.0%
AACTTGACAGAATCCTCTAA+TGG - chr7_1:33526787-33526806 Msa1016580:intron 35.0%
ACTACAAATGATGAAAGGAG+TGG + chr7_1:33526834-33526853 None:intergenic 35.0%
GACCAATTTATAGCACATAG+AGG - chr7_1:33526893-33526912 Msa1016580:intron 35.0%
ATCAGTAAAGATCAATGCAC+CGG - chr7_1:33527000-33527019 Msa1016580:intron 35.0%
AACATGAAATGTAGCTATGG+GGG + chr7_1:33527104-33527123 None:intergenic 35.0%
GAACATGAAATGTAGCTATG+GGG + chr7_1:33527105-33527124 None:intergenic 35.0%
GGAACATGAAATGTAGCTAT+GGG + chr7_1:33527106-33527125 None:intergenic 35.0%
TGGAACATGAAATGTAGCTA+TGG + chr7_1:33527107-33527126 None:intergenic 35.0%
CTCTCATTCTTTCCAGTTAT+AGG + chr7_1:33527385-33527404 None:intergenic 35.0%
CTATAACTGGAAAGAATGAG+AGG - chr7_1:33527383-33527402 Msa1016580:CDS 35.0%
!! CTTTGCACTTAACTAGTCTT+TGG - chr7_1:33527483-33527502 Msa1016580:CDS 35.0%
! GTTGAAAGAGTACAAGATTC+AGG + chr7_1:33527703-33527722 None:intergenic 35.0%
!!! GTGAGTTTTTAGTGTGTGGA+GGG + chr7_1:33522613-33522632 None:intergenic 40.0%
!!! TGTGAGTTTTTAGTGTGTGG+AGG + chr7_1:33522614-33522633 None:intergenic 40.0%
!! TGTTGGTTTGAGAGGTGAAT+GGG + chr7_1:33522730-33522749 None:intergenic 40.0%
!! TTGTTGGTTTGAGAGGTGAA+TGG + chr7_1:33522731-33522750 None:intergenic 40.0%
CGAACAAAGAAAACACCATC+AGG + chr7_1:33523061-33523080 None:intergenic 40.0%
TTGTGTGTATGAGTTTCAGG+TGG + chr7_1:33523245-33523264 None:intergenic 40.0%
!! GGTGTTTAGGTGTTGAGAAA+TGG - chr7_1:33523418-33523437 Msa1016580:intron 40.0%
! TAATGTTTAAGCGGTGTCAG+TGG - chr7_1:33523481-33523500 Msa1016580:intron 40.0%
! TTTTCTGACGTACTCAAGCT+TGG - chr7_1:33523705-33523724 Msa1016580:intron 40.0%
AACAATGTCAAGCTTGAAGG+GGG + chr7_1:33523821-33523840 None:intergenic 40.0%
!!! CCCATGTTTTAAGACATGAG+TGG + chr7_1:33523866-33523885 None:intergenic 40.0%
!! ATGTCTGCACTGATTAAGAG+TGG + chr7_1:33524013-33524032 None:intergenic 40.0%
CTATTGAAATTACGGGGTTC+AGG + chr7_1:33524069-33524088 None:intergenic 40.0%
CTGAACCCCGTAATTTCAAT+AGG - chr7_1:33524067-33524086 Msa1016580:intron 40.0%
TATCAAGGTTTCTGACCAAG+TGG - chr7_1:33524090-33524109 Msa1016580:intron 40.0%
CCCAGTAAATATAGCTCAGT+TGG - chr7_1:33524126-33524145 Msa1016580:intron 40.0%
CACTATAAGTGTGGAGAAGT+GGG + chr7_1:33524202-33524221 None:intergenic 40.0%
ACACTATAAGTGTGGAGAAG+TGG + chr7_1:33524203-33524222 None:intergenic 40.0%
AGACTCACACACTATAAGTG+TGG + chr7_1:33524211-33524230 None:intergenic 40.0%
AGTGTTACGTGGAAAGAACT+GGG - chr7_1:33524407-33524426 Msa1016580:intron 40.0%
GAAATACCATTGCCACCATT+CGG - chr7_1:33524429-33524448 Msa1016580:intron 40.0%
GGAATGTGAAGCAAACAACT+AGG + chr7_1:33524546-33524565 None:intergenic 40.0%
! ACTTTTCCAACCAAAACCAC+AGG + chr7_1:33524695-33524714 None:intergenic 40.0%
!!! TGTGGTTTTGGTTGGAAAAG+TGG - chr7_1:33524694-33524713 Msa1016580:intron 40.0%
!!! CAACACTGGCTTTTAAGAGT+AGG - chr7_1:33524873-33524892 Msa1016580:intron 40.0%
GACCAAATCTCTAGACAATG+TGG - chr7_1:33524924-33524943 Msa1016580:intron 40.0%
CATTCGTGTTGGGTTTGAAT+GGG + chr7_1:33524961-33524980 None:intergenic 40.0%
TCATTCGTGTTGGGTTTGAA+TGG + chr7_1:33524962-33524981 None:intergenic 40.0%
TTCAAACCCAACACGAATGA+AGG - chr7_1:33524962-33524981 Msa1016580:intron 40.0%
GCAACCCAAATGCCAAAATT+AGG - chr7_1:33525005-33525024 Msa1016580:intron 40.0%
!! GCTGCCTAATTTTGGCATTT+GGG + chr7_1:33525012-33525031 None:intergenic 40.0%
!! AGCTGCCTAATTTTGGCATT+TGG + chr7_1:33525013-33525032 None:intergenic 40.0%
AATGCCAAAATTAGGCAGCT+AGG - chr7_1:33525013-33525032 Msa1016580:intron 40.0%
GAAACTCACGCAGTAACTTA+AGG + chr7_1:33525270-33525289 None:intergenic 40.0%
ACTTACTCCTCTTGCAAGTA+TGG + chr7_1:33525346-33525365 None:intergenic 40.0%
TGAACTTGAAAAAGTCCCTC+AGG + chr7_1:33525383-33525402 None:intergenic 40.0%
! TCTCGGATGTCATTTGAAGT+AGG + chr7_1:33525413-33525432 None:intergenic 40.0%
GGAAGTCTGCCTAAATCAAA+AGG - chr7_1:33525455-33525474 Msa1016580:intron 40.0%
!!! GTTTGATGCCATTTTGGTGT+TGG - chr7_1:33525478-33525497 Msa1016580:intron 40.0%
! ATCTTGCTGAATAAAGGTGC+TGG + chr7_1:33525547-33525566 None:intergenic 40.0%
CTGTGGATCTTGCTGAATAA+AGG + chr7_1:33525553-33525572 None:intergenic 40.0%
AGTTGAAATGTTCGCCAAGA+AGG - chr7_1:33525571-33525590 Msa1016580:intron 40.0%
CTTATCATCCGGAGTATGAT+GGG - chr7_1:33525702-33525721 Msa1016580:intron 40.0%
!! TGAGGTTCTGAACAGAACTT+TGG - chr7_1:33525730-33525749 Msa1016580:intron 40.0%
!! CTTGGACGGTTTTATACCAT+TGG - chr7_1:33525792-33525811 Msa1016580:intron 40.0%
! GATGAACAATGGTGGAACAT+CGG - chr7_1:33525815-33525834 Msa1016580:intron 40.0%
!! ATCAAGCTTGCTAATCGTCT+CGG - chr7_1:33525997-33526016 Msa1016580:intron 40.0%
! TCACCCACTTGAATTTTGGA+TGG + chr7_1:33526027-33526046 None:intergenic 40.0%
! CCAATCACCCACTTGAATTT+TGG + chr7_1:33526031-33526050 None:intergenic 40.0%
CCAAAATTCAAGTGGGTGAT+TGG - chr7_1:33526028-33526047 Msa1016580:intron 40.0%
!!! AGTTTTGGATGCAACCTGAT+AGG + chr7_1:33526103-33526122 None:intergenic 40.0%
GAGGAGAAGGTTGAATTAGA+AGG - chr7_1:33526337-33526356 Msa1016580:intron 40.0%
AGAAGGTTGAATTAGAAGGG+CGG - chr7_1:33526341-33526360 Msa1016580:intron 40.0%
! AGACTTCCATCCTTGTTTGA+AGG - chr7_1:33526434-33526453 Msa1016580:intron 40.0%
! GACTTCCATCCTTGTTTGAA+GGG - chr7_1:33526435-33526454 Msa1016580:intron 40.0%
AAAGACCCTTCAAACAAGGA+TGG + chr7_1:33526443-33526462 None:intergenic 40.0%
TGCAAAAGACCCTTCAAACA+AGG + chr7_1:33526447-33526466 None:intergenic 40.0%
TGTTCATCTGATGAGAGGAA+CGG + chr7_1:33526710-33526729 None:intergenic 40.0%
AGCAATGTTCATCTGATGAG+AGG + chr7_1:33526715-33526734 None:intergenic 40.0%
TGAACATTGCTCCAGTAACT+TGG - chr7_1:33526724-33526743 Msa1016580:intron 40.0%
GTTGGAAATGACCAAGTTAC+TGG + chr7_1:33526738-33526757 None:intergenic 40.0%
!!! AGTTTTCGATGGTGGAGTTT+CGG + chr7_1:33526771-33526790 None:intergenic 40.0%
! TTCTGTCAAGTTTTCGATGG+TGG + chr7_1:33526779-33526798 None:intergenic 40.0%
! GGATTCTGTCAAGTTTTCGA+TGG + chr7_1:33526782-33526801 None:intergenic 40.0%
GAAGAAGTTCACACCATTAG+AGG + chr7_1:33526803-33526822 None:intergenic 40.0%
ATGGTGTGAACTTCTTCCAA+CGG - chr7_1:33526806-33526825 Msa1016580:intron 40.0%
TCAGTAAAGATCAATGCACC+GGG - chr7_1:33527001-33527020 Msa1016580:intron 40.0%
TGATATCCTTTGCAACTCGA+AGG + chr7_1:33527332-33527351 None:intergenic 40.0%
!! TTCGAGTTGCAAAGGATATC+AGG - chr7_1:33527331-33527350 Msa1016580:CDS 40.0%
! TCGAGTTGCAAAGGATATCA+GGG - chr7_1:33527332-33527351 Msa1016580:CDS 40.0%
CTTTCCAGTTATAGGAAGCT+CGG + chr7_1:33527377-33527396 None:intergenic 40.0%
TTTCTACTCAACTGCCTCTA+TGG - chr7_1:33527448-33527467 Msa1016580:CDS 40.0%
!! GAATGGGTTGGGGAAGAAAA+GGG + chr7_1:33522714-33522733 None:intergenic 45.0%
!! TGAATGGGTTGGGGAAGAAA+AGG + chr7_1:33522715-33522734 None:intergenic 45.0%
!! TTTGAGAGGTGAATGGGTTG+GGG + chr7_1:33522724-33522743 None:intergenic 45.0%
! GTTTGAGAGGTGAATGGGTT+GGG + chr7_1:33522725-33522744 None:intergenic 45.0%
!!! GGCGGTTAGTCTTTTGTTGT+TGG + chr7_1:33522747-33522766 None:intergenic 45.0%
!! TAGCTTGGTGGGGTTGTTTT+GGG + chr7_1:33522819-33522838 None:intergenic 45.0%
ATCACCTGTGGTTACTGTAC+CGG + chr7_1:33522885-33522904 None:intergenic 45.0%
GCAGCTGTTCATCATTGAGA+AGG - chr7_1:33522949-33522968 Msa1016580:CDS 45.0%
CTGTTCATCATTGAGAAGGC+TGG - chr7_1:33522953-33522972 Msa1016580:CDS 45.0%
!! ATTGAGAAGGCTGGCTTGTT+TGG - chr7_1:33522962-33522981 Msa1016580:CDS 45.0%
! GGCTTGTTTGGAACTAAAGC+TGG - chr7_1:33522974-33522993 Msa1016580:CDS 45.0%
CGCTTGTGTGTATGAGTTTC+AGG + chr7_1:33523248-33523267 None:intergenic 45.0%
TGTCAGTGGAGTTGTACTCA+TGG - chr7_1:33523495-33523514 Msa1016580:intron 45.0%
GTCAGTGGAGTTGTACTCAT+GGG - chr7_1:33523496-33523515 Msa1016580:intron 45.0%
TCAGTGGAGTTGTACTCATG+GGG - chr7_1:33523497-33523516 Msa1016580:intron 45.0%
ACTCATGGGGCAATTCCAAT+TGG - chr7_1:33523510-33523529 Msa1016580:intron 45.0%
CCTACCTAGAGATTCAAGGT+TGG + chr7_1:33523659-33523678 None:intergenic 45.0%
CCAACCTTGAATCTCTAGGT+AGG - chr7_1:33523656-33523675 Msa1016580:intron 45.0%
GCTAAGGGTTAAGGAGTTAG+AGG + chr7_1:33523775-33523794 None:intergenic 45.0%
ACAATGTCAAGCTTGAAGGG+GGG + chr7_1:33523820-33523839 None:intergenic 45.0%
TCCATGGACATTGGAATGCA+GGG - chr7_1:33524153-33524172 Msa1016580:intron 45.0%
GAAATCCAGGGTTCAAACCT+CGG + chr7_1:33524180-33524199 None:intergenic 45.0%
!! TTTTTGGCCAAATAGCCCAG+TGG + chr7_1:33524236-33524255 None:intergenic 45.0%
TTTACGAGTGCAGTGTTACG+TGG - chr7_1:33524396-33524415 Msa1016580:intron 45.0%
CAGTGTTACGTGGAAAGAAC+TGG - chr7_1:33524406-33524425 Msa1016580:intron 45.0%
AACCAAAACCACAGGTGTGT+GGG + chr7_1:33524687-33524706 None:intergenic 45.0%
GAGTCAAGCTCGTTGTTAAG+AGG - chr7_1:33524791-33524810 Msa1016580:intron 45.0%
! CAGTGTTGTAAGGCTGCTTT+AGG + chr7_1:33524861-33524880 None:intergenic 45.0%
CTAAAGCAGCCTTACAACAC+TGG - chr7_1:33524859-33524878 Msa1016580:intron 45.0%
CTAGCACCTTCATTCGTGTT+GGG + chr7_1:33524971-33524990 None:intergenic 45.0%
TCTAGCACCTTCATTCGTGT+TGG + chr7_1:33524972-33524991 None:intergenic 45.0%
!! AACACGAATGAAGGTGCTAG+AGG - chr7_1:33524971-33524990 Msa1016580:intron 45.0%
! TGCTCCTAGCTGCCTAATTT+TGG + chr7_1:33525020-33525039 None:intergenic 45.0%
TCCGAAAGAGATCTCTTGGT+AGG - chr7_1:33525101-33525120 Msa1016580:intron 45.0%
GCCTACCAAGAGATCTCTTT+CGG + chr7_1:33525105-33525124 None:intergenic 45.0%
CATCATGCCATACTTGCAAG+AGG - chr7_1:33525336-33525355 Msa1016580:intron 45.0%
!!! TGATGCCATTTTGGTGTTGG+TGG - chr7_1:33525481-33525500 Msa1016580:intron 45.0%
AACCACCACCAACACCAAAA+TGG + chr7_1:33525489-33525508 None:intergenic 45.0%
!! TGGTGTTGGTGGTGGTTAAT+CGG - chr7_1:33525492-33525511 Msa1016580:intron 45.0%
!! TTGGTGGTGGTTAATCGGTT+TGG - chr7_1:33525497-33525516 Msa1016580:intron 45.0%
CTTGGCGAACATTTCAACTG+TGG + chr7_1:33525570-33525589 None:intergenic 45.0%
TGAAATGTTCGCCAAGAAGG+CGG - chr7_1:33525574-33525593 Msa1016580:intron 45.0%
ATACATCCGTAGTGAGTGAC+AGG - chr7_1:33525606-33525625 Msa1016580:intron 45.0%
TACATCCGTAGTGAGTGACA+GGG - chr7_1:33525607-33525626 Msa1016580:intron 45.0%
!! TTTTTCAGAACGGAAGGGAC+AGG - chr7_1:33525662-33525681 Msa1016580:intron 45.0%
! TTTTCAGAACGGAAGGGACA+GGG - chr7_1:33525663-33525682 Msa1016580:intron 45.0%
CCATCATACTCCGGATGATA+AGG + chr7_1:33525704-33525723 None:intergenic 45.0%
CCTTATCATCCGGAGTATGA+TGG - chr7_1:33525701-33525720 Msa1016580:intron 45.0%
TCAGCTTTCCCATCATACTC+CGG + chr7_1:33525713-33525732 None:intergenic 45.0%
ACCATTGGGATGAACAATGG+TGG - chr7_1:33525807-33525826 Msa1016580:intron 45.0%
TCCACCATTGTTCATCCCAA+TGG + chr7_1:33525811-33525830 None:intergenic 45.0%
TGGTGGAACATCGGTAATCA+AGG - chr7_1:33525824-33525843 Msa1016580:intron 45.0%
GGTGGAACATCGGTAATCAA+GGG - chr7_1:33525825-33525844 Msa1016580:intron 45.0%
GTGGAACATCGGTAATCAAG+GGG - chr7_1:33525826-33525845 Msa1016580:intron 45.0%
! TTCTAGGAAAGCCTTTGTCG+AGG - chr7_1:33525896-33525915 Msa1016580:CDS 45.0%
CTGCCTGTTAGGATGAATGA+GGG + chr7_1:33526071-33526090 None:intergenic 45.0%
TGCATCCAAAACTGACAGCT+AGG - chr7_1:33526110-33526129 Msa1016580:intron 45.0%
GACGTTTAGGAACTGAAGTC+TGG + chr7_1:33526311-33526330 None:intergenic 45.0%
GTTCCTAAACGTCAAGTTCG+AGG - chr7_1:33526318-33526337 Msa1016580:intron 45.0%
TCTCCTCGAACTTGACGTTT+AGG + chr7_1:33526324-33526343 None:intergenic 45.0%
AAACGTCAAGTTCGAGGAGA+AGG - chr7_1:33526324-33526343 Msa1016580:intron 45.0%
GAAGGTTGAATTAGAAGGGC+GGG - chr7_1:33526342-33526361 Msa1016580:intron 45.0%
AAGGTTGAATTAGAAGGGCG+GGG - chr7_1:33526343-33526362 Msa1016580:intron 45.0%
!!! TTGGTTTTAGCCGGTGCAAA+AGG - chr7_1:33526482-33526501 Msa1016580:intron 45.0%
! AGAATGCTCTCCTTTTGCAC+CGG + chr7_1:33526495-33526514 None:intergenic 45.0%
GTATAAGATGGCAGCAAGCA+AGG + chr7_1:33526595-33526614 None:intergenic 45.0%
! GGAGTAGGGCGTAGTATTTT+GGG + chr7_1:33526657-33526676 None:intergenic 45.0%
! TGGAGTAGGGCGTAGTATTT+TGG + chr7_1:33526658-33526677 None:intergenic 45.0%
AATACTACGCCCTACTCCAT+TGG - chr7_1:33526659-33526678 Msa1016580:intron 45.0%
AATTGGTCCTACCTGTCTGT+CGG + chr7_1:33526881-33526900 None:intergenic 45.0%
ATGTCTGAACAATGCTGCGT+TGG - chr7_1:33527220-33527239 Msa1016580:CDS 45.0%
!! TGATGACCTTCGAGTTGCAA+AGG - chr7_1:33527323-33527342 Msa1016580:CDS 45.0%
CGAGTTGCAAAGGATATCAG+GGG - chr7_1:33527333-33527352 Msa1016580:CDS 45.0%
!!! TTAAATTAAATTTGTTTTTT+CGG - chr7_1:33523218-33523237 Msa1016580:intron 5.0%
!!! AAAATTTTATTTAATGATTT+AGG - chr7_1:33524494-33524513 Msa1016580:intron 5.0%
!! AATTTGATAAAAAAAAAAAA+GGG + chr7_1:33527060-33527079 None:intergenic 5.0%
GAAGAAAAGGGAAGTGGTGG+TGG + chr7_1:33522702-33522721 None:intergenic 50.0%
GTTGGGGAAGAAAAGGGAAG+TGG + chr7_1:33522708-33522727 None:intergenic 50.0%
GGTTTGAGAGGTGAATGGGT+TGG + chr7_1:33522726-33522745 None:intergenic 50.0%
! GGTGAGGAGGTTCTTTTTGG+CGG + chr7_1:33522765-33522784 None:intergenic 50.0%
! GAGGGTGAGGAGGTTCTTTT+TGG + chr7_1:33522768-33522787 None:intergenic 50.0%
ACGGTCTTGGTCAGAGATGA+GGG + chr7_1:33522786-33522805 None:intergenic 50.0%
!! TGTTTTGGGTCTTGAGGCCA+CGG + chr7_1:33522805-33522824 None:intergenic 50.0%
!!! TGGGGTTGTTTTGGGTCTTG+AGG + chr7_1:33522811-33522830 None:intergenic 50.0%
!! CTAGCTTGGTGGGGTTGTTT+TGG + chr7_1:33522820-33522839 None:intergenic 50.0%
! ACGATCGATGCTAGCTTGGT+GGG + chr7_1:33522830-33522849 None:intergenic 50.0%
! AACGATCGATGCTAGCTTGG+TGG + chr7_1:33522831-33522850 None:intergenic 50.0%
GGTAACGATCGATGCTAGCT+TGG + chr7_1:33522834-33522853 None:intergenic 50.0%
AACCACAGGTGATTCCCTGT+CGG - chr7_1:33522892-33522911 Msa1016580:three_prime_UTR 50.0%
! GTTGCTCTGGACTACTGAGA+AGG - chr7_1:33522925-33522944 Msa1016580:CDS 50.0%
TACACACAAGCGCGTTATCC+TGG - chr7_1:33523256-33523275 Msa1016580:intron 50.0%
ACACACAAGCGCGTTATCCT+GGG - chr7_1:33523257-33523276 Msa1016580:intron 50.0%
GTTGAGAAATGGGGAACTGC+CGG - chr7_1:33523429-33523448 Msa1016580:intron 50.0%
GTTGGGGTACAAGTTCGAAC+CGG + chr7_1:33523451-33523470 None:intergenic 50.0%
GCGACCAACCTTGAATCTCT+AGG - chr7_1:33523652-33523671 Msa1016580:intron 50.0%
CTGGTCTGAGCTAAGGGTTA+AGG + chr7_1:33523784-33523803 None:intergenic 50.0%
! GCTCAACTGGTCTGAGCTAA+GGG + chr7_1:33523790-33523809 None:intergenic 50.0%
! AGCTCAACTGGTCTGAGCTA+AGG + chr7_1:33523791-33523810 None:intergenic 50.0%
!! TAGCTCAGTTGGTAGCTCCA+TGG - chr7_1:33524137-33524156 Msa1016580:intron 50.0%
!! GTTGGTAGCTCCATGGACAT+TGG - chr7_1:33524144-33524163 Msa1016580:intron 50.0%
CTCCATGGACATTGGAATGC+AGG - chr7_1:33524152-33524171 Msa1016580:intron 50.0%
CCATGGACATTGGAATGCAG+GGG - chr7_1:33524154-33524173 Msa1016580:intron 50.0%
GTGGAGAAGTGGGAAATCCA+GGG + chr7_1:33524192-33524211 None:intergenic 50.0%
TGTGGAGAAGTGGGAAATCC+AGG + chr7_1:33524193-33524212 None:intergenic 50.0%
TAGTGTGTGAGTCTAGCCAC+TGG - chr7_1:33524217-33524236 Msa1016580:intron 50.0%
AGTGTGTGAGTCTAGCCACT+GGG - chr7_1:33524218-33524237 Msa1016580:intron 50.0%
AGTCTAGCCACTGGGCTATT+TGG - chr7_1:33524226-33524245 Msa1016580:intron 50.0%
ACTTACCAACCCTGTCCGAA+TGG + chr7_1:33524447-33524466 None:intergenic 50.0%
AATGATCTCCCACACACCTG+TGG - chr7_1:33524676-33524695 Msa1016580:intron 50.0%
CAACCAAAACCACAGGTGTG+TGG + chr7_1:33524688-33524707 None:intergenic 50.0%
!!! CACACACCTGTGGTTTTGGT+TGG - chr7_1:33524686-33524705 Msa1016580:intron 50.0%
GGTGCTAGAGGATACACTGA+AGG - chr7_1:33524983-33525002 Msa1016580:intron 50.0%
TTCACATCCTGCCATGCTTG+TGG + chr7_1:33525127-33525146 None:intergenic 50.0%
!!! TGCCATTTTGGTGTTGGTGG+TGG - chr7_1:33525484-33525503 Msa1016580:intron 50.0%
TGGTTCCCTGTCACTCACTA+CGG + chr7_1:33525615-33525634 None:intergenic 50.0%
! GGAGTATGATGGGAAAGCTG+AGG - chr7_1:33525712-33525731 Msa1016580:intron 50.0%
! TTGTGCTACTGCCTCGACAA+AGG + chr7_1:33525910-33525929 None:intergenic 50.0%
CCTGTTAGGATGAATGAGGG+AGG + chr7_1:33526068-33526087 None:intergenic 50.0%
CCTCCCTCATTCATCCTAAC+AGG - chr7_1:33526065-33526084 Msa1016580:intron 50.0%
CCTGCCTGTTAGGATGAATG+AGG + chr7_1:33526072-33526091 None:intergenic 50.0%
CCTCATTCATCCTAACAGGC+AGG - chr7_1:33526069-33526088 Msa1016580:intron 50.0%
GGCTTAGATACCTGCCTGTT+AGG + chr7_1:33526082-33526101 None:intergenic 50.0%
GGCAGGTATCTAAGCCTATC+AGG - chr7_1:33526086-33526105 Msa1016580:intron 50.0%
GTTGGCAGAACAGCTTCTAC+TGG + chr7_1:33526276-33526295 None:intergenic 50.0%
TGTTCTGCCAACTGAGCTTC+AGG - chr7_1:33526284-33526303 Msa1016580:intron 50.0%
AAGATGGCAGCAAGCAAGGA+TGG + chr7_1:33526591-33526610 None:intergenic 50.0%
!! GTAGGGCGTAGTATTTTGGG+AGG + chr7_1:33526654-33526673 None:intergenic 50.0%
GAGGCACAACCAATGGAGTA+GGG + chr7_1:33526671-33526690 None:intergenic 50.0%
AGGAACGGAGCAAAAGTGGT+CGG + chr7_1:33526695-33526714 None:intergenic 50.0%
TGAGAGGAACGGAGCAAAAG+TGG + chr7_1:33526699-33526718 None:intergenic 50.0%
AGTTTCGGTTGCTTGGCTGT+TGG + chr7_1:33526756-33526775 None:intergenic 50.0%
! ATGGTGGAGTTTCGGTTGCT+TGG + chr7_1:33526763-33526782 None:intergenic 50.0%
GATGAAAGGAGTGGATCCGT+TGG + chr7_1:33526825-33526844 None:intergenic 50.0%
ATTGGTCCTACCTGTCTGTC+GGG + chr7_1:33526880-33526899 None:intergenic 50.0%
AATGTAGCTATGGGGGAGAG+TGG + chr7_1:33527097-33527116 None:intergenic 50.0%
CAACTCGAAGGTCATCATCG+AGG + chr7_1:33527320-33527339 None:intergenic 50.0%
TCGACCGAGCTTCCTATAAC+TGG - chr7_1:33527370-33527389 Msa1016580:CDS 50.0%
!! ATGGGAATGTGTGGTGGTGG+TGG + chr7_1:33522671-33522690 None:intergenic 55.0%
ACCACCACCACACATTCCCA+TGG - chr7_1:33522670-33522689 Msa1016580:three_prime_UTR 55.0%
!! GAAAAGGGAAGTGGTGGTGG+TGG + chr7_1:33522699-33522718 None:intergenic 55.0%
GGGGAAGAAAAGGGAAGTGG+TGG + chr7_1:33522705-33522724 None:intergenic 55.0%
CTTGGTCAGAGATGAGGGTG+AGG + chr7_1:33522781-33522800 None:intergenic 55.0%
CACGGTCTTGGTCAGAGATG+AGG + chr7_1:33522787-33522806 None:intergenic 55.0%
CTCATCTCTGACCAAGACCG+TGG - chr7_1:33522785-33522804 Msa1016580:three_prime_UTR 55.0%
! CGATCGATGCTAGCTTGGTG+GGG + chr7_1:33522829-33522848 None:intergenic 55.0%
CGTTACCGCGATCGATGCAA+TGG - chr7_1:33522847-33522866 Msa1016580:three_prime_UTR 55.0%
ATCGATGCAATGGCCGAGCT+TGG - chr7_1:33522857-33522876 Msa1016580:three_prime_UTR 55.0%
! TACTGTACCGGTGCCAAGCT+CGG + chr7_1:33522873-33522892 None:intergenic 55.0%
GTGATTCCCTGTCGGCAACT+TGG - chr7_1:33522900-33522919 Msa1016580:three_prime_UTR 55.0%
ATTCCCTGTCGGCAACTTGG+CGG - chr7_1:33522903-33522922 Msa1016580:three_prime_UTR 55.0%
CGTTATCCTGGGTTCGAGCT+CGG - chr7_1:33523268-33523287 Msa1016580:intron 55.0%
GTTATCCTGGGTTCGAGCTC+GGG - chr7_1:33523269-33523288 Msa1016580:intron 55.0%
GTCAAGCTTGAAGGGGGGAT+GGG + chr7_1:33523815-33523834 None:intergenic 55.0%
TGTCAAGCTTGAAGGGGGGA+TGG + chr7_1:33523816-33523835 None:intergenic 55.0%
CCCCTGCATTCCAATGTCCA+TGG + chr7_1:33524157-33524176 None:intergenic 55.0%
ACCATTGCCACCATTCGGAC+AGG - chr7_1:33524434-33524453 Msa1016580:intron 55.0%
CCATTGCCACCATTCGGACA+GGG - chr7_1:33524435-33524454 Msa1016580:intron 55.0%
TACCAACCCTGTCCGAATGG+TGG + chr7_1:33524444-33524463 None:intergenic 55.0%
! CTCCCACACACCTGTGGTTT+TGG - chr7_1:33524682-33524701 Msa1016580:intron 55.0%
CTCTTGGTAGGCCACAAGCA+TGG - chr7_1:33525113-33525132 Msa1016580:intron 55.0%
CATGGGAAACCCGAGTCTCA+TGG - chr7_1:33525203-33525222 Msa1016580:intron 55.0%
ATGCAGCTTGACCGCCTTCT+TGG + chr7_1:33525588-33525607 None:intergenic 55.0%
GTCTGGTCCTGAAGCTCAGT+TGG + chr7_1:33526294-33526313 None:intergenic 55.0%
! GGAGGCACAACCAATGGAGT+AGG + chr7_1:33526672-33526691 None:intergenic 55.0%
GAACGGAGCAAAAGTGGTCG+GGG + chr7_1:33526693-33526712 None:intergenic 55.0%
GGAACGGAGCAAAAGTGGTC+GGG + chr7_1:33526694-33526713 None:intergenic 55.0%
TCCAGTAGAACCCGACAGAC+AGG - chr7_1:33526867-33526886 Msa1016580:intron 55.0%
ACCTGTCTGTCGGGTTCTAC+TGG + chr7_1:33526871-33526890 None:intergenic 55.0%
GTAGAACCCGACAGACAGGT+AGG - chr7_1:33526871-33526890 Msa1016580:intron 55.0%
AATGCACCGGGTTGCGTATG+CGG - chr7_1:33527013-33527032 Msa1016580:intron 55.0%
GTGTGTGGAGGGAGTGAGCT+TGG + chr7_1:33522602-33522621 None:intergenic 60.0%
GCCATGGGAATGTGTGGTGG+TGG + chr7_1:33522674-33522693 None:intergenic 60.0%
GTGGCCATGGGAATGTGTGG+TGG + chr7_1:33522677-33522696 None:intergenic 60.0%
GTGGTGGCCATGGGAATGTG+TGG + chr7_1:33522680-33522699 None:intergenic 60.0%
!! AAGGGAAGTGGTGGTGGTGG+TGG + chr7_1:33522696-33522715 None:intergenic 60.0%
GGTCAGAGATGAGGGTGAGG+AGG + chr7_1:33522778-33522797 None:intergenic 60.0%
! CTCGGCCATTGCATCGATCG+CGG + chr7_1:33522855-33522874 None:intergenic 60.0%
!! GGCACCGGTACAGTAACCAC+AGG - chr7_1:33522878-33522897 Msa1016580:three_prime_UTR 60.0%
TGCCGACAGGGAATCACCTG+TGG + chr7_1:33522897-33522916 None:intergenic 60.0%
CAACCGCCAAGTTGCCGACA+GGG + chr7_1:33522909-33522928 None:intergenic 60.0%
!! CGAGCTCGGGTGAAGGCATT+CGG - chr7_1:33523282-33523301 Msa1016580:intron 60.0%
ACATTGGAATGCAGGGGCCG+AGG - chr7_1:33524160-33524179 Msa1016580:intron 60.0%
CCCTGTCCGAATGGTGGCAA+TGG + chr7_1:33524438-33524457 None:intergenic 60.0%
TGCCACCATTCGGACAGGGT+TGG - chr7_1:33524439-33524458 Msa1016580:intron 60.0%
TGGTAGGCCACAAGCATGGC+AGG - chr7_1:33525117-33525136 Msa1016580:intron 60.0%
ATGCACCGGGTTGCGTATGC+GGG - chr7_1:33527014-33527033 Msa1016580:intron 60.0%
AAGCTCCCGCATACGCAACC+CGG + chr7_1:33527022-33527041 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr7_1:33527030-33527049 Msa1016580:intron 60.0%
!! GTGGTGGTGGTGGTGGCCAT+GGG + chr7_1:33522689-33522708 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGCCA+TGG + chr7_1:33522690-33522709 None:intergenic 65.0%
GGGTCTTGAGGCCACGGTCT+TGG + chr7_1:33522799-33522818 None:intergenic 65.0%
GCAATGGCCGAGCTTGGCAC+CGG - chr7_1:33522863-33522882 Msa1016580:three_prime_UTR 65.0%
GCAACCGCCAAGTTGCCGAC+AGG + chr7_1:33522910-33522929 None:intergenic 65.0%
CGGCAACTTGGCGGTTGCTC+TGG - chr7_1:33522912-33522931 Msa1016580:exon 65.0%
CTTCACCCGAGCTCGAACCC+AGG + chr7_1:33523277-33523296 None:intergenic 65.0%
CTGGGTTCGAGCTCGGGTGA+AGG - chr7_1:33523275-33523294 Msa1016580:intron 65.0%
GGGGGGATGGGTAGCTCAAC+TGG + chr7_1:33523803-33523822 None:intergenic 65.0%
AGGGGCCGAGGTTTGAACCC+TGG - chr7_1:33524172-33524191 Msa1016580:intron 65.0%
! GGTCGGGGAGGCACAACCAA+TGG + chr7_1:33526678-33526697 None:intergenic 65.0%
CGGAGCAAAAGTGGTCGGGG+AGG + chr7_1:33526690-33526709 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr7_1:33527031-33527050 Msa1016580:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 33522589 33527735 33522589 ID=Msa1016580;Name=Msa1016580
chr7_1 mRNA 33522589 33527735 33522589 ID=Msa1016580-mRNA-1;Parent=Msa1016580;Name=Msa1016580-mRNA-1;_AED=0.19;_eAED=0.19;_QI=100|1|1|1|0.5|0.66|3|334|199
chr7_1 exon 33522589 33523022 33522589 ID=Msa1016580-mRNA-1:exon:6516;Parent=Msa1016580-mRNA-1
chr7_1 exon 33525864 33525929 33525864 ID=Msa1016580-mRNA-1:exon:6515;Parent=Msa1016580-mRNA-1
chr7_1 exon 33527202 33527735 33527202 ID=Msa1016580-mRNA-1:exon:6514;Parent=Msa1016580-mRNA-1
chr7_1 five_prime_UTR 33527636 33527735 33527636 ID=Msa1016580-mRNA-1:five_prime_utr;Parent=Msa1016580-mRNA-1
chr7_1 CDS 33527202 33527635 33527202 ID=Msa1016580-mRNA-1:cds;Parent=Msa1016580-mRNA-1
chr7_1 CDS 33525864 33525929 33525864 ID=Msa1016580-mRNA-1:cds;Parent=Msa1016580-mRNA-1
chr7_1 CDS 33522923 33523022 33522923 ID=Msa1016580-mRNA-1:cds;Parent=Msa1016580-mRNA-1
chr7_1 three_prime_UTR 33522589 33522922 33522589 ID=Msa1016580-mRNA-1:three_prime_utr;Parent=Msa1016580-mRNA-1
Gene Sequence

>Msa1016580

ATGGCCACCACCACCACCACTTCCCTTTTCTTCCCCAACCCATTCACCTCTCAAACCAACAACAAAAGACTAACCGCCAAAAAGAACCTCCTCACCCTCATCTCTGACCAAGACCGTGGCCTCAAGACCCAAAACAACCCCACCAAGCTAGCATCGATCGTTACCGCGATCGATGCAATGGCCGAGCTTGGCACCGGTACAGTAACCACAGGTGATTCCCTGTCGGCAACTTGGCGGTTGCTCTGGACTACTGAGAAGGAGCAGCTGTTCATCATTGAGAAGGCTGGCTTGTTTGGAACTAAAGCTGGAGATGTTTTACAGGTCATTGACGTTAAGAATTTGATTCTTAACAATGTTATTACTTTTACTCCTGATGGTGTTTTCTTTGTTCGGTCGAATATTGAAGTTGCTTCGGAGCAGAGAGTGAACTTCAAATTTACGAGTGCAGTGTTACGTGGAAAGAACTGGGAAATACCATTGCCACCATTCGGACAGGGTTGGTTTGATACTGTATACCTCGATGATGACCTTCGAGTTGCAAAGGATATCAGGGGAGACTATTTAGTTGTCGACCGAGCTTCCTATAACTGGAAAGAATGA

Protein sequence

>Msa1016580

MATTTTTSLFFPNPFTSQTNNKRLTAKKNLLTLISDQDRGLKTQNNPTKLASIVTAIDAMAELGTGTVTTGDSLSATWRLLWTTEKEQLFIIEKAGLFGTKAGDVLQVIDVKNLILNNVITFTPDGVFFVRSNIEVASEQRVNFKFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDDLRVAKDIRGDYLVVDRASYNWKE*