AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011100 MtrunA17_Chr1g0159621 94.059 1010 36 3 1 987 1 1009 0.0 1937
Msa0011100 MtrunA17_Chr3g0125211 65.672 1005 275 11 28 987 1 980 0.0 1288
Msa0011100 MtrunA17_Chr4g0039281 40.979 327 161 7 686 986 197 517 2.33e-68 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011100 AT1G21640.1 60.020 988 329 11 30 987 34 985 0.0 1159
Msa0011100 AT1G21640.2 58.882 1002 332 11 30 987 34 999 0.0 1150
Msa0011100 AT3G21070.2 41.590 327 159 7 686 986 201 521 2.55e-70 243
Msa0011100 AT3G21070.1 41.441 333 157 8 686 986 150 476 6.53e-70 241
Msa0011100 AT3G21070.3 41.590 327 159 7 686 986 279 599 4.19e-69 242

Find 239 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGAGAAATTCCATTTA+AGG 0.117499 1_1:+16751768 None:intergenic
GATAAAATAGTTTCTGTTCT+TGG 0.162840 1_1:-16752708 Msa0011100:CDS
GAAATTCTTACCGCAATTTA+AGG 0.173847 1_1:-16751590 Msa0011100:CDS
GCTTGATTCGCTGCCTAAAT+TGG 0.187801 1_1:-16748033 Msa0011100:CDS
TTCTGCTCGATTAGAATTAA+AGG 0.198861 1_1:-16748421 Msa0011100:intron
TTTGGGATAATAATAAATTT+TGG 0.224648 1_1:+16755225 None:intergenic
AAGGCTTCATTCTGCATTAA+TGG 0.226394 1_1:-16752808 Msa0011100:CDS
CAAGGTAATGCAGCCTTAAA+TGG 0.229895 1_1:-16751781 Msa0011100:CDS
GTGGGTCCTGATAGTTTAAA+TGG 0.235665 1_1:-16751514 Msa0011100:CDS
GGAAAAGATCCTTCCTTATC+AGG 0.258160 1_1:+16751751 None:intergenic
TAGATTCCTGGGCTTGGGCT+TGG 0.268674 1_1:-16754970 Msa0011100:CDS
GTCCTACACTATTTGCTAAT+TGG 0.269632 1_1:-16752401 Msa0011100:CDS
GTCCTGGAGGGGACCAGTTC+CGG 0.273978 1_1:-16752880 Msa0011100:CDS
TTTAACAACAGCACATTCTT+TGG 0.278780 1_1:+16751055 None:intergenic
CTTGCCAGAATTCCAGGTTT+TGG 0.283366 1_1:-16750664 Msa0011100:CDS
CAAGCCTCTCGTTCCAATTT+AGG 0.290109 1_1:+16748020 None:intergenic
AGAATGTGATAACATGTTAA+AGG 0.290501 1_1:+16751963 None:intergenic
GCGTTACTTCTAGCATCTTC+TGG 0.291203 1_1:+16748181 None:intergenic
AAAGGTCACGGAATCTTCTT+TGG 0.291776 1_1:-16751128 Msa0011100:CDS
TGACACTCACTTTGGTTATA+AGG 0.293938 1_1:+16749711 None:intergenic
AACAATATGCACGGAACGTT+TGG 0.298253 1_1:+16748495 None:intergenic
AAATCTCCAAGGGTTGAAAA+TGG 0.312801 1_1:-16751304 Msa0011100:CDS
AAAGAAAGCCGAGATGTTCT+TGG 0.317725 1_1:-16751182 Msa0011100:CDS
GAATCCAAAACCTGGAATTC+TGG 0.318930 1_1:+16750660 None:intergenic
AAGAATGTCTGCTATGATTC+TGG 0.319807 1_1:-16752450 Msa0011100:CDS
ATTGTCATCGACCGTAATTT+CGG 0.320404 1_1:+16751459 None:intergenic
TTGGCTTCCATTGTAAAGAT+AGG 0.325479 1_1:-16747895 Msa0011100:three_prime_UTR
AATTCTAATCGAGCAGAATC+TGG 0.332072 1_1:+16748426 None:intergenic
AGATTCCTGGGCTTGGGCTT+GGG 0.332524 1_1:-16754969 Msa0011100:CDS
CAATTTAAGGACATGGCTAT+TGG 0.337248 1_1:-16751577 Msa0011100:CDS
GGCAGGGACGATGTTCTTAC+TGG 0.338007 1_1:-16752660 Msa0011100:CDS
TTGTCATCGACCGTAATTTC+GGG 0.343242 1_1:+16751460 None:intergenic
GCTGATCCATTTAAACTATC+AGG 0.343657 1_1:+16751508 None:intergenic
GATGTACTTGCCAGAATTCC+AGG 0.343709 1_1:-16750670 Msa0011100:CDS
CTTCGCCAACAATAGATTCC+TGG 0.358107 1_1:-16754982 Msa0011100:CDS
TTCATAGCAAGGAAGGAGTT+TGG 0.361927 1_1:-16752068 Msa0011100:CDS
CACCTTCGGGCTTGACTCTC+CGG 0.365207 1_1:-16754859 Msa0011100:intron
ATCTGGAGAGCCCGAAATTA+CGG 0.366087 1_1:-16751470 Msa0011100:CDS
CAATGAGGTGGTTGTTGATC+GGG 0.368521 1_1:-16749780 Msa0011100:CDS
ATTTGATAATTGACATAATC+GGG 0.377033 1_1:+16751622 None:intergenic
GGTGCAGTCATAACTTCAAC+TGG 0.379017 1_1:+16752156 None:intergenic
AAAGCTTGGGGACGAACTAT+TGG 0.380081 1_1:-16751032 Msa0011100:CDS
TCCTGGAGGGGACCAGTTCC+GGG 0.383459 1_1:-16752879 Msa0011100:CDS
CTCGCAACCTGTTCCATTGT+TGG 0.385256 1_1:+16752135 None:intergenic
CGTAAAGGTAAAGCAATTCC+AGG 0.385617 1_1:-16749821 Msa0011100:CDS
GACAGTGAATGTGGACAGAT+AGG 0.388238 1_1:+16748468 None:intergenic
GATTTGATAATTGACATAAT+CGG 0.389848 1_1:+16751621 None:intergenic
AAATGGAATTTCTCCTGATA+AGG 0.390422 1_1:-16751764 Msa0011100:CDS
GAATGTGATAACATGTTAAA+GGG 0.391666 1_1:+16751964 None:intergenic
CAACAATAGATTCCTGGGCT+TGG 0.396998 1_1:-16754976 Msa0011100:CDS
AACAATAGATTCCTGGGCTT+GGG 0.398987 1_1:-16754975 Msa0011100:CDS
CATTCAATCTTTGAAAGGTA+TGG 0.404554 1_1:+16749749 None:intergenic
ATGTCAATTATCAAATCAAA+AGG 0.408195 1_1:-16751615 Msa0011100:CDS
GCATTATGCAATCCGTTGAC+TGG 0.408333 1_1:-16752783 Msa0011100:CDS
GACAATCAAAAGTCTGTGAA+TGG 0.413979 1_1:-16751442 Msa0011100:CDS
CGTCGTCAACGGGAGTTGTA+AGG 0.414483 1_1:-16751216 Msa0011100:CDS
CCTTGTATCATGGCTATAGA+AGG 0.419763 1_1:+16750630 None:intergenic
GTTAACAAGTTTGACCAAAC+AGG 0.420760 1_1:-16748070 Msa0011100:CDS
CTAACGTGGTTACTAGATAA+AGG 0.422106 1_1:-16752285 Msa0011100:CDS
GTTTCCAATGGTACTATTGT+GGG 0.424786 1_1:-16751532 Msa0011100:CDS
TTTCATCTCGCTTCTGAAAA+CGG 0.431248 1_1:+16752566 None:intergenic
CATCTGCTATGGTGTCTAGA+TGG 0.435337 1_1:-16752041 Msa0011100:CDS
GGTGGTGGAGGTAACATGTC+AGG 0.436442 1_1:+16755246 None:intergenic
GAACGAGAGGCTTGATCAAA+AGG 0.441229 1_1:-16748011 Msa0011100:CDS
TGCGGAACCAATCACCTGTT+TGG 0.443313 1_1:+16748056 None:intergenic
CTAATCTCTGCGTCAAGAAA+GGG 0.444051 1_1:+16752618 None:intergenic
AGTTTGACCAAACAGGTGAT+TGG 0.449654 1_1:-16748063 Msa0011100:CDS
GGCGAAGAATGGAGAAGAGT+TGG 0.452537 1_1:+16754998 None:intergenic
ATGTTCTTGGTTCGGACAGA+TGG 0.453009 1_1:-16751169 Msa0011100:CDS
GACTGCACCAACAATGGAAC+AGG 0.453609 1_1:-16752142 Msa0011100:CDS
TAATGCAGAATGAAGCCTTT+CGG 0.457413 1_1:+16752812 None:intergenic
AATCTATTGTTGGCGAAGAA+TGG 0.457791 1_1:+16754987 None:intergenic
GATATGTGTGCGTCGTCAAC+GGG 0.459074 1_1:-16751226 Msa0011100:CDS
AAGCCGAGATGTTCTTGGTT+CGG 0.460510 1_1:-16751177 Msa0011100:CDS
AGGATATCAAATACTTTCCC+TGG 0.460707 1_1:+16749803 None:intergenic
GGAAAGGAAGAAGGATACTA+AGG 0.463261 1_1:-16754932 Msa0011100:CDS
TCTAGTAGGACAACAGTAAA+CGG 0.468135 1_1:-16751406 Msa0011100:CDS
GCTCATGTTGATCATCCATC+TGG 0.468145 1_1:-16751487 Msa0011100:CDS
GTGAACGATGCTATTTCATC+TGG 0.471293 1_1:-16752201 Msa0011100:CDS
ATACTAGCATTATATTGCAT+TGG 0.471495 1_1:-16747914 Msa0011100:three_prime_UTR
GCTAATCTCTGCGTCAAGAA+AGG 0.471633 1_1:+16752617 None:intergenic
TCAATGAGGTGGTTGTTGAT+CGG 0.473844 1_1:-16749781 Msa0011100:CDS
TTCGCCAACAATAGATTCCT+GGG 0.474640 1_1:-16754981 Msa0011100:CDS
ATTAGCAAATAGTGTAGGAC+AGG 0.475860 1_1:+16752404 None:intergenic
ACTGCATATTCTACGGCTGC+TGG 0.476774 1_1:-16749499 Msa0011100:CDS
GCTTTACGCGATGAAGAGTT+GGG 0.476938 1_1:-16751262 Msa0011100:CDS
AGCTTTACGCGATGAAGAGT+TGG 0.477808 1_1:-16751263 Msa0011100:CDS
TGTTTCCAATGGTACTATTG+TGG 0.479120 1_1:-16751533 Msa0011100:CDS
TTTAAGCTCCGATCATCATC+AGG 0.480457 1_1:+16752498 None:intergenic
CAAGGTGATGGAGTCATTGT+TGG 0.482346 1_1:-16749538 Msa0011100:CDS
ACGCACACATATCGCCTTCA+AGG 0.482866 1_1:+16751236 None:intergenic
ATGATCGGAGCTTAAATGTA+TGG 0.483058 1_1:-16752491 Msa0011100:CDS
TCCTTGCTATGAAGATAGAT+AGG 0.483132 1_1:+16752078 None:intergenic
GCAAGTACATCATGCACATC+AGG 0.487460 1_1:+16750682 None:intergenic
GTTCATGTCTTTCAGGTACA+AGG 0.490225 1_1:-16749556 Msa0011100:intron
CATAGCATTCAATCTTTGAA+AGG 0.491325 1_1:+16749744 None:intergenic
AAAAGCTCAAGTTCCTCCTC+CGG 0.491521 1_1:-16751701 Msa0011100:CDS
TGGCTTCCATTGTAAAGATA+GGG 0.493982 1_1:-16747894 Msa0011100:three_prime_UTR
AACGCGTGGGTCTCGTTCGA+TGG 0.496395 1_1:-16748163 Msa0011100:CDS
GAAAATGGAACAGTCAAGGC+TGG 0.498620 1_1:-16751289 Msa0011100:CDS
TGATAGATCATGGGATTGGA+AGG 0.500969 1_1:+16752908 None:intergenic
AGTTTCTGTTCTTGGATGCA+TGG 0.501044 1_1:-16752700 Msa0011100:CDS
CTTACCGCAATTTAAGGACA+TGG 0.501593 1_1:-16751584 Msa0011100:CDS
CTGAAGTCGAGGCATATTGT+AGG 0.503127 1_1:-16752848 Msa0011100:CDS
ACCCGGAACTGGTCCCCTCC+AGG 0.504355 1_1:+16752878 None:intergenic
CTCAGCAACAGATGCTTATG+TGG 0.506563 1_1:-16751087 Msa0011100:CDS
GACTTAAGACAAGTCATTCA+CGG 0.506567 1_1:-16749905 Msa0011100:CDS
GATGCTCACTCATATGTATC+CGG 0.508423 1_1:+16748104 None:intergenic
GATGCAACACGCAGTTCTGT+TGG 0.508978 1_1:-16751850 Msa0011100:CDS
ATGATCTATCAAAATTGTCC+TGG 0.509243 1_1:-16752896 Msa0011100:CDS
AGTATCAAAGGAAAGGAAGA+AGG 0.510086 1_1:-16754941 Msa0011100:CDS
ACAATCAAAAGTCTGTGAAT+GGG 0.511700 1_1:-16751441 Msa0011100:CDS
CATTATGCAATCCGTTGACT+GGG 0.511984 1_1:-16752782 Msa0011100:CDS
TCAGCAATATCACCCGGAAC+TGG 0.514753 1_1:+16752867 None:intergenic
CGTCCCTGCCTTTGTTCACA+AGG 0.515046 1_1:+16752673 None:intergenic
GGAATGCTTCTAGTTCTAGT+AGG 0.516272 1_1:-16751420 Msa0011100:CDS
TCTCAAGAGGAGACTCAGTC+CGG 0.520016 1_1:-16748123 Msa0011100:CDS
TTTAAGAAAGCAATAAATTG+TGG 0.521143 1_1:-16747745 Msa0011100:three_prime_UTR
GAAGAGTTGGGATCCCTTGA+AGG 0.521799 1_1:-16751250 Msa0011100:CDS
CAGGCATTAAATAATTCTGA+AGG 0.522487 1_1:+16752517 None:intergenic
CAAGCCCAGGAATCTATTGT+TGG 0.524127 1_1:+16754977 None:intergenic
CGATATGTGTGCGTCGTCAA+CGG 0.524377 1_1:-16751227 Msa0011100:CDS
TATCCCTTGTGAACAAAGGC+AGG 0.526158 1_1:-16752677 Msa0011100:CDS
GAAATTGTCTCTTACAGTCT+CGG 0.527981 1_1:+16752236 None:intergenic
GTAATTTCGGGCTCTCCAGA+TGG 0.529696 1_1:+16751472 None:intergenic
AACTCAAGTACCTTGTATCA+TGG 0.533647 1_1:+16750620 None:intergenic
GTCATTGTTGGAACTCCTAC+GGG 0.534827 1_1:-16749526 Msa0011100:CDS
TACGGCTGCTGGAGGTTCCA+TGG 0.536543 1_1:-16749488 Msa0011100:intron
AGATGAAATAGCATCGTTCA+CGG 0.537270 1_1:+16752203 None:intergenic
AGAAAGATCCTCCCTCGAAA+AGG 0.537816 1_1:-16751899 Msa0011100:CDS
AGGACCCACAATAGTACCAT+TGG 0.538672 1_1:+16751528 None:intergenic
ACAGTGAATGTGGACAGATA+GGG 0.540155 1_1:+16748469 None:intergenic
GTCTTTCAGGTACAAGGTGA+TGG 0.540615 1_1:-16749550 Msa0011100:intron
ATGGTGTCTACATTACTCTA+AGG 0.541109 1_1:-16749868 Msa0011100:CDS
GCTTGGGCTTTGAGTATCAA+AGG 0.544651 1_1:-16754953 Msa0011100:CDS
GGCTTTGAGTATCAAAGGAA+AGG 0.544773 1_1:-16754948 Msa0011100:CDS
TGGTCAAACTTGTTAACAGT+TGG 0.545206 1_1:+16748076 None:intergenic
TCAAGGGGAATTACATTACA+TGG 0.545720 1_1:-16751377 Msa0011100:CDS
TCGCTTCTGAAAACGGCAAG+TGG 0.547859 1_1:+16752573 None:intergenic
AGAGAAAATGAATGTTATTG+TGG 0.547969 1_1:-16750707 Msa0011100:CDS
TTCTGAAAACGGCAAGTGGA+GGG 0.548295 1_1:+16752577 None:intergenic
ATGTTACAGATAGCAGCAAA+AGG 0.548480 1_1:-16752101 Msa0011100:CDS
GTCTGCACGAATCCAAAACC+TGG 0.548544 1_1:+16750652 None:intergenic
CCTTCTATAGCCATGATACA+AGG 0.550051 1_1:-16750630 Msa0011100:intron
ATTTAATGCCTGATGATGAT+CGG 0.551924 1_1:-16752506 Msa0011100:CDS
GCAGAATCTGGAAGTATGAC+AGG 0.553043 1_1:+16748438 None:intergenic
GCCTATCTATCTTCATAGCA+AGG 0.556380 1_1:-16752079 Msa0011100:CDS
GGGAAGTACTGCATATTCTA+CGG 0.557056 1_1:-16749506 Msa0011100:CDS
AGTCATTGTTGGAACTCCTA+CGG 0.557721 1_1:-16749527 Msa0011100:CDS
GGAATTTCTCCTGATAAGGA+AGG 0.557805 1_1:-16751760 Msa0011100:CDS
AAGAAAGGGGTTCATAATTG+AGG 0.558581 1_1:+16752632 None:intergenic
ATCACATTCTACAAATAGCT+CGG 0.558854 1_1:-16751950 Msa0011100:CDS
TGTCAATTATCAAATCAAAA+GGG 0.561271 1_1:-16751614 Msa0011100:CDS
AGTTATGACTGCACCAACAA+TGG 0.561997 1_1:-16752148 Msa0011100:CDS
ATGTAACAACTAAATCTCCA+AGG 0.564009 1_1:-16751315 Msa0011100:CDS
TTGGAAAAGATATCCGGAGG+AGG 0.566248 1_1:+16751688 None:intergenic
GTATGTAGTTTGACGACTAC+AGG 0.566879 1_1:-16749931 Msa0011100:intron
GGCAAACCCTATCTTTACAA+TGG 0.567433 1_1:+16747888 None:intergenic
TTCTTCTTCTAAAGAAGACA+CGG 0.570642 1_1:-16752364 Msa0011100:CDS
AGAAGACAACAGCTCTCAAG+AGG 0.570976 1_1:-16748136 Msa0011100:CDS
ATCTATCTTCATAGCAAGGA+AGG 0.571744 1_1:-16752075 Msa0011100:CDS
AAACTTGTTAACAGTTGGAA+GGG 0.572633 1_1:+16748081 None:intergenic
CAAACTTGTTAACAGTTGGA+AGG 0.574187 1_1:+16748080 None:intergenic
GGAATGTAGTGTCTCGTATG+AGG 0.575663 1_1:-16752760 Msa0011100:CDS
CAAAGCCCAAGCCCAAGCCC+AGG 0.575862 1_1:+16754964 None:intergenic
AGCATCTGTTGCTGAGTGCT+AGG 0.576041 1_1:+16751094 None:intergenic
ATATGCACGGAACGTTTGGA+TGG 0.577570 1_1:+16748499 None:intergenic
AATGAGGTGGTTGTTGATCG+GGG 0.579010 1_1:-16749779 Msa0011100:CDS
GGTGGTCAAGTAACAGAAGA+AGG 0.582613 1_1:-16752309 Msa0011100:CDS
AACTTGTTAACAGTTGGAAG+GGG 0.584585 1_1:+16748082 None:intergenic
CTATCAAAATTGTCCTGGAG+GGG 0.585592 1_1:-16752891 Msa0011100:CDS
CAGTGAATGTGGACAGATAG+GGG 0.586339 1_1:+16748470 None:intergenic
ATGTCGATACATGCTACCAT+TGG 0.586619 1_1:+16755068 None:intergenic
ACAGTAAACGGATCAAGTCA+AGG 0.588409 1_1:-16751394 Msa0011100:CDS
AGAAGAAGTTGAATGAACTA+CGG 0.588609 1_1:+16755037 None:intergenic
GAAGGTGAATGAAAATGACT+TGG 0.590526 1_1:+16754875 None:intergenic
CTTCTGAAAACGGCAAGTGG+AGG 0.591574 1_1:+16752576 None:intergenic
AAGGGCAACATGTAAACTCT+CGG 0.591706 1_1:+16752536 None:intergenic
CACGGAAATACTTCACGAGA+TGG 0.591942 1_1:-16749887 Msa0011100:CDS
CAGTAAACGGATCAAGTCAA+GGG 0.592433 1_1:-16751393 Msa0011100:CDS
GGAGTCTGAAGAATTAGAAA+CGG 0.593217 1_1:-16752343 Msa0011100:CDS
TCTATCAAAATTGTCCTGGA+GGG 0.594114 1_1:-16752892 Msa0011100:CDS
AATGTGATAACATGTTAAAG+GGG 0.595112 1_1:+16751965 None:intergenic
ATCTATCAAAATTGTCCTGG+AGG 0.595257 1_1:-16752893 Msa0011100:CDS
GTCGTCAACGGGAGTTGTAA+GGG 0.596339 1_1:-16751215 Msa0011100:CDS
GAAGAGTTGGAGAACAAACA+TGG 0.598617 1_1:+16755011 None:intergenic
AAGAGACAATTTCTATCAAG+CGG 0.601979 1_1:-16752226 Msa0011100:CDS
GGAGATGTGGTTGTTTCCAA+TGG 0.604328 1_1:-16751544 Msa0011100:CDS
CAACAATGGAACAGGTTGCG+AGG 0.605355 1_1:-16752134 Msa0011100:CDS
CGCACACATATCGCCTTCAA+GGG 0.605429 1_1:+16751237 None:intergenic
GGTCTAAATGACAGTGAATG+TGG 0.605581 1_1:+16748459 None:intergenic
ATTCACAACGGCAGAGACGT+CGG 0.606609 1_1:+16751348 None:intergenic
AAAATGGAACAGTCAAGGCT+GGG 0.606655 1_1:-16751288 Msa0011100:CDS
AGTTTGGAGATCATCTGCTA+TGG 0.609973 1_1:-16752052 Msa0011100:CDS
GGGACGATGTTCTTACTGGA+AGG 0.612837 1_1:-16752656 Msa0011100:CDS
GTAAAGATAGGGTTTGCCAA+TGG 0.613072 1_1:-16747883 Msa0011100:three_prime_UTR
ATGGCTATTGGAAGACGTGA+AGG 0.614015 1_1:-16751565 Msa0011100:CDS
GCATATTCTACGGCTGCTGG+AGG 0.614349 1_1:-16749496 Msa0011100:CDS
AGGCATTAAATAATTCTGAA+GGG 0.616351 1_1:+16752518 None:intergenic
TGTCCGAACCAAGAACATCT+CGG 0.617408 1_1:+16751174 None:intergenic
GGTAGTTTAACTAACTCCAA+TGG 0.617888 1_1:-16755084 Msa0011100:exon
GTCCCTGCCTTTGTTCACAA+GGG 0.619714 1_1:+16752674 None:intergenic
ATTTGATATCCTCAATGAGG+TGG 0.621324 1_1:-16749792 Msa0011100:CDS
GTAAAGGTAAAGCAATTCCA+GGG 0.621381 1_1:-16749820 Msa0011100:CDS
GCTGCCTAAATTGGAACGAG+AGG 0.621399 1_1:-16748024 Msa0011100:CDS
GGTTGAAAATGGAACAGTCA+AGG 0.621469 1_1:-16751293 Msa0011100:CDS
TAATCTCTGCGTCAAGAAAG+GGG 0.622731 1_1:+16752619 None:intergenic
ACACTACATTCCCCAGTCAA+CGG 0.627397 1_1:+16752771 None:intergenic
ATCCCTTGTGAACAAAGGCA+GGG 0.631490 1_1:-16752676 Msa0011100:CDS
GATCAACAACCACCTCATTG+AGG 0.631885 1_1:+16749783 None:intergenic
ATGGTATCCCTTGTGAACAA+AGG 0.632008 1_1:-16752681 Msa0011100:CDS
ATGTGATAACATGTTAAAGG+GGG 0.633639 1_1:+16751966 None:intergenic
TGTAACAACTAAATCTCCAA+GGG 0.634129 1_1:-16751314 Msa0011100:CDS
TACCGGAGAGTCAAGCCCGA+AGG 0.636841 1_1:+16754857 None:intergenic
GGGTGATATTGCTGAAGTCG+AGG 0.638757 1_1:-16752859 Msa0011100:CDS
CCGATGTAAAACTCTTAACA+CGG 0.639133 1_1:+16747666 None:intergenic
CTGCTATGGTGTCTAGATGG+AGG 0.639306 1_1:-16752038 Msa0011100:CDS
ATCGGAGCTTAAATGTATGG+AGG 0.646616 1_1:-16752488 Msa0011100:CDS
TTGTACTAGAGAAAAGGTCA+CGG 0.651293 1_1:-16751140 Msa0011100:CDS
GGATCTTTAGAAACTCCGAA+AGG 0.657111 1_1:-16752827 Msa0011100:CDS
ATAGCCATGTCCTTAAATTG+CGG 0.663244 1_1:+16751580 None:intergenic
GTGCAGTCATAACTTCAACT+GGG 0.663724 1_1:+16752157 None:intergenic
AGTATTTGATATCCTCAATG+AGG 0.664737 1_1:-16749795 Msa0011100:CDS
TCGACTTCAGCAATATCACC+CGG 0.665510 1_1:+16752861 None:intergenic
GAATATGCAGTACTTCCCGT+AGG 0.667616 1_1:+16749511 None:intergenic
AGATGCTAGAAGTAACGCGT+GGG 0.672147 1_1:-16748176 Msa0011100:CDS
TGATAATTGACATAATCGGG+AGG 0.681483 1_1:+16751625 None:intergenic
AAGATGCTAGAAGTAACGCG+TGG 0.681498 1_1:-16748177 Msa0011100:CDS
AATGGTAGCATGTATCGACA+TGG 0.684506 1_1:-16755066 Msa0011100:CDS
TGGAAGACGTGAAGGAGATG+TGG 0.685338 1_1:-16751557 Msa0011100:CDS
CACCAATTAGCAAATAGTGT+AGG 0.686349 1_1:+16752399 None:intergenic
ATAGGGGTAAACAATATGCA+CGG 0.689744 1_1:+16748486 None:intergenic
AGTAAACGGATCAAGTCAAG+GGG 0.695048 1_1:-16751392 Msa0011100:CDS
AAGTATGATGAGAAAACACA+AGG 0.702953 1_1:-16751799 Msa0011100:CDS
CAGGGATAACCCTCACCACG+AGG 0.704430 1_1:+16752423 None:intergenic
TTAGCAAATAGTGTAGGACA+GGG 0.706605 1_1:+16752405 None:intergenic
TTAGGCAGCGAATCAAGCTG+CGG 0.712248 1_1:+16748038 None:intergenic
ATTATGCAATCCGTTGACTG+GGG 0.726680 1_1:-16752781 Msa0011100:CDS
TAACAGAAGAAGGACTAACG+TGG 0.734514 1_1:-16752299 Msa0011100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTAAAAAAATA+CGG + chr1_1:16749893-16749912 None:intergenic 0.0%
!!! TTTTTGTTTATTTTTGTTTA+AGG + chr1_1:16747756-16747775 None:intergenic 10.0%
!!! ATGTGTATTTTAAATTTTTA+TGG - chr1_1:16748452-16748471 Msa0011100:CDS 10.0%
!! ATTATTATTATTATTCACAA+CGG + chr1_1:16751589-16751608 None:intergenic 10.0%
!!! TTCAAATCATAATTTATTTT+AGG - chr1_1:16752552-16752571 Msa0011100:CDS 10.0%
!!! TATTTGAAATTAACATTTTA+AGG - chr1_1:16754673-16754692 Msa0011100:intron 10.0%
!!! TTTGGGATAATAATAAATTT+TGG + chr1_1:16747700-16747719 None:intergenic 15.0%
!! AATGAAAATGAAAAAAGTTT+GGG + chr1_1:16747717-16747736 None:intergenic 15.0%
!! TAATGAAAATGAAAAAAGTT+TGG + chr1_1:16747718-16747737 None:intergenic 15.0%
!!! TCTTTTAATTCCATTTTTTT+TGG - chr1_1:16749432-16749451 Msa0011100:intron 15.0%
!!! TTAAAAATTTAGAATAGACA+TGG - chr1_1:16751954-16751973 Msa0011100:CDS 15.0%
!! GAAACATTAAATTTAGTTAA+AGG + chr1_1:16752595-16752614 None:intergenic 15.0%
!!! AAATATTAGATTTATTTTCC+TGG - chr1_1:16753489-16753508 Msa0011100:intron 15.0%
!!! GGAAAATTAAAATTTTGTTT+GGG + chr1_1:16753847-16753866 None:intergenic 15.0%
!!! TGGAAAATTAAAATTTTGTT+TGG + chr1_1:16753848-16753867 None:intergenic 15.0%
!! TTAGCATAATAAAATTATAC+TGG - chr1_1:16754157-16754176 Msa0011100:intron 15.0%
!!! ATAATAATAAATTTTGGTGG+TGG + chr1_1:16747694-16747713 None:intergenic 20.0%
!! AAATAATTAAAGAAGATCGT+TGG - chr1_1:16747813-16747832 Msa0011100:three_prime_UTR 20.0%
!! CGATAATAACATAACATATT+AGG + chr1_1:16748122-16748141 None:intergenic 20.0%
!! GTCACTTGAAATAATTAAAT+AGG - chr1_1:16748193-16748212 Msa0011100:intron 20.0%
!! TATTAAATTCCTTAACAAGA+AGG + chr1_1:16748288-16748307 None:intergenic 20.0%
!!! TATGAAATGAAATTTTTAGC+TGG - chr1_1:16748326-16748345 Msa0011100:intron 20.0%
!!! TCTTTTCTAATAGTTTTTCT+AGG + chr1_1:16748760-16748779 None:intergenic 20.0%
!! AACTATTAGAAAAGATTTAG+AGG - chr1_1:16748765-16748784 Msa0011100:intron 20.0%
!! AAATACGGAAATTCATTTAA+GGG + chr1_1:16749878-16749897 None:intergenic 20.0%
!! AAAATACGGAAATTCATTTA+AGG + chr1_1:16749879-16749898 None:intergenic 20.0%
!!! AGGAATTCAAATTCTAAAAA+TGG + chr1_1:16749997-16750016 None:intergenic 20.0%
!! TTAGAAGAAGAAAAATATAC+AGG + chr1_1:16750550-16750569 None:intergenic 20.0%
!!! ATTTGATAATTGACATAATC+GGG + chr1_1:16751303-16751322 None:intergenic 20.0%
!!! GATTTGATAATTGACATAAT+CGG + chr1_1:16751304-16751323 None:intergenic 20.0%
!! ATGTCAATTATCAAATCAAA+AGG - chr1_1:16751307-16751326 Msa0011100:CDS 20.0%
!! TGTCAATTATCAAATCAAAA+GGG - chr1_1:16751308-16751327 Msa0011100:CDS 20.0%
!! CTAAATTTAATGTTTCAAAC+AGG - chr1_1:16752599-16752618 Msa0011100:CDS 20.0%
!! TTGACACGAAAAAAATATAA+AGG + chr1_1:16752626-16752645 None:intergenic 20.0%
!! CATAGATGAAAAATAAAGTT+TGG + chr1_1:16752687-16752706 None:intergenic 20.0%
!! ATTGTTACCAAATTATTTCA+AGG + chr1_1:16753523-16753542 None:intergenic 20.0%
!!! ATTGACTTTGAATTTGTTTT+GGG + chr1_1:16753908-16753927 None:intergenic 20.0%
!!! TATTGACTTTGAATTTGTTT+TGG + chr1_1:16753909-16753928 None:intergenic 20.0%
!!! AATTTTAGTGTAAGAAACAT+CGG + chr1_1:16754291-16754310 None:intergenic 20.0%
!! GTAAATTAAATCATTCTCTT+CGG - chr1_1:16754523-16754542 Msa0011100:intron 20.0%
!! ATAATATGTTGAAAAACCAT+TGG + chr1_1:16755058-16755077 None:intergenic 20.0%
!! TTTAAGAAAGCAATAAATTG+TGG - chr1_1:16755177-16755196 Msa0011100:five_prime_UTR 20.0%
!! GGGATAATAATAAATTTTGG+TGG + chr1_1:16747697-16747716 None:intergenic 25.0%
! TAATTAAATAGGACACTTTG+CGG - chr1_1:16748204-16748223 Msa0011100:intron 25.0%
! ATTATACTTCCTTCTTGTTA+AGG - chr1_1:16748276-16748295 Msa0011100:intron 25.0%
! ATGATTTAGATAGACCATTA+TGG - chr1_1:16748791-16748810 Msa0011100:intron 25.0%
!! TACTTTAAGCTAGCTTAAAT+TGG + chr1_1:16748984-16749003 None:intergenic 25.0%
! GAAATTGTTTGAAGATTGAT+TGG + chr1_1:16749066-16749085 None:intergenic 25.0%
! ATTTAACATGGTATTAGAGT+CGG + chr1_1:16749150-16749169 None:intergenic 25.0%
! ACTCTAATACCATGTTAAAT+GGG - chr1_1:16749150-16749169 Msa0011100:intron 25.0%
!! CATCCTTTGAATTATCTTTT+GGG + chr1_1:16749188-16749207 None:intergenic 25.0%
!! TCATCCTTTGAATTATCTTT+TGG + chr1_1:16749189-16749208 None:intergenic 25.0%
! AAAAGATAATTCAAAGGATG+AGG - chr1_1:16749188-16749207 Msa0011100:intron 25.0%
! AAAGATAATTCAAAGGATGA+GGG - chr1_1:16749189-16749208 Msa0011100:intron 25.0%
!! TTTGGTGTATAAATGTGTTT+GGG + chr1_1:16749217-16749236 None:intergenic 25.0%
!!! TTTTGGTGTATAAATGTGTT+TGG + chr1_1:16749218-16749237 None:intergenic 25.0%
! ATTTATACACCAAAAAACCT+GGG - chr1_1:16749223-16749242 Msa0011100:intron 25.0%
!! ATTTTGTCAAAATTGCAATG+CGG - chr1_1:16749296-16749315 Msa0011100:intron 25.0%
! AGTTCACATTCCAAAAAAAA+TGG + chr1_1:16749445-16749464 None:intergenic 25.0%
! ATGCAAAACAGCTAATAAAA+TGG + chr1_1:16749507-16749526 None:intergenic 25.0%
!! GTTTTGCATTATGATTTAGT+TGG - chr1_1:16749518-16749537 Msa0011100:CDS 25.0%
!!! ACTATTTTATCTTCAAGTTG+AGG + chr1_1:16750205-16750224 None:intergenic 25.0%
! GATAAAATAGTTTCTGTTCT+TGG - chr1_1:16750214-16750233 Msa0011100:intron 25.0%
! AGGCATTAAATAATTCTGAA+GGG + chr1_1:16750407-16750426 None:intergenic 25.0%
! AATGTGATAACATGTTAAAG+GGG + chr1_1:16750960-16750979 None:intergenic 25.0%
! GAATGTGATAACATGTTAAA+GGG + chr1_1:16750961-16750980 None:intergenic 25.0%
! AGAATGTGATAACATGTTAA+AGG + chr1_1:16750962-16750981 None:intergenic 25.0%
!! ATTTTCTTGTACTAGAGAAA+AGG - chr1_1:16751776-16751795 Msa0011100:CDS 25.0%
!! ATGATTTTCTTTGACTCTAA+TGG - chr1_1:16751930-16751949 Msa0011100:CDS 25.0%
! AGTTTCTGTAGTTAATGTAT+AGG - chr1_1:16751983-16752002 Msa0011100:CDS 25.0%
! TATAGAAACTGGATTAAGAA+TGG + chr1_1:16752160-16752179 None:intergenic 25.0%
!! CAATAACATTCATTTTCTCT+TGG + chr1_1:16752215-16752234 None:intergenic 25.0%
! AGAGAAAATGAATGTTATTG+TGG - chr1_1:16752215-16752234 Msa0011100:CDS 25.0%
! AAGGTTAAATGATACAATAG+GGG + chr1_1:16752494-16752513 None:intergenic 25.0%
! CAAGGTTAAATGATACAATA+GGG + chr1_1:16752495-16752514 None:intergenic 25.0%
! CATCTATGTTACAATAATTG+TGG - chr1_1:16752699-16752718 Msa0011100:CDS 25.0%
! AAATAAAGACAACTACATCA+GGG + chr1_1:16752907-16752926 None:intergenic 25.0%
! AAAATAAAGACAACTACATC+AGG + chr1_1:16752908-16752927 None:intergenic 25.0%
! CTTTACGAAAAATTTCACAT+CGG + chr1_1:16753088-16753107 None:intergenic 25.0%
! TGATAAATTTCAGTCATTGT+TGG - chr1_1:16753545-16753564 Msa0011100:intron 25.0%
! AAAATAAGTGAAAGAACACA+GGG + chr1_1:16753800-16753819 None:intergenic 25.0%
! AAAAATAAGTGAAAGAACAC+AGG + chr1_1:16753801-16753820 None:intergenic 25.0%
! ATTATGCTAAGTTTCTAACT+AGG + chr1_1:16754147-16754166 None:intergenic 25.0%
! ACAAATCATATTGGATTTCA+TGG - chr1_1:16754549-16754568 Msa0011100:intron 25.0%
!! TGAATTATGATTTTGGATCT+AGG - chr1_1:16754646-16754665 Msa0011100:intron 25.0%
!!! AACATTTTAAGGTTTTGCTA+AGG - chr1_1:16754684-16754703 Msa0011100:intron 25.0%
! TGCTAAGGATATAAGTTATA+TGG - chr1_1:16754699-16754718 Msa0011100:intron 25.0%
! GATATAAGTTATATGGTGTT+TGG - chr1_1:16754706-16754725 Msa0011100:intron 25.0%
! ATACTAGCATTATATTGCAT+TGG - chr1_1:16755008-16755027 Msa0011100:CDS 25.0%
!!! GGTTTTTCAACATATTATGA+TGG - chr1_1:16755060-16755079 Msa0011100:CDS 25.0%
!!! TATATCATTTTGAAGCAACT+TGG - chr1_1:16755209-16755228 Msa0011100:five_prime_UTR 25.0%
!!! ATATCATTTTGAAGCAACTT+GGG - chr1_1:16755210-16755229 Msa0011100:five_prime_UTR 25.0%
!!! ATAATAAATTTTGGTGGTGG+AGG + chr1_1:16747691-16747710 None:intergenic 30.0%
AATTAAAGAAGATCGTTGGT+AGG - chr1_1:16747817-16747836 Msa0011100:three_prime_UTR 30.0%
AGAAGAAGTTGAATGAACTA+CGG + chr1_1:16747888-16747907 None:intergenic 30.0%
!! AAGTCATTTTCATTCACCTT+CGG - chr1_1:16748049-16748068 Msa0011100:CDS 30.0%
! ATAAGTATAAGAGAGTGTAC+CGG + chr1_1:16748085-16748104 None:intergenic 30.0%
AAGATCACTTGTGTTATGTT+AGG - chr1_1:16748383-16748402 Msa0011100:intron 30.0%
AGACTAGACAAGATAAGATT+AGG - chr1_1:16748573-16748592 Msa0011100:intron 30.0%
TAGAAAAGATGATAGAAACC+AGG - chr1_1:16748636-16748655 Msa0011100:intron 30.0%
TTGATCGAATTATGCCATAA+TGG + chr1_1:16748808-16748827 None:intergenic 30.0%
AGCTTAAATTGGTATTAGAG+TGG + chr1_1:16748973-16748992 None:intergenic 30.0%
CATTTATTCGTCGAATAACT+CGG - chr1_1:16749020-16749039 Msa0011100:intron 30.0%
ATTTATTCGTCGAATAACTC+GGG - chr1_1:16749021-16749040 Msa0011100:intron 30.0%
TTTAACATGGTATTAGAGTC+GGG + chr1_1:16749149-16749168 None:intergenic 30.0%
GACTCTAATACCATGTTAAA+TGG - chr1_1:16749149-16749168 Msa0011100:intron 30.0%
CATCCCAAAAGATAATTCAA+AGG - chr1_1:16749182-16749201 Msa0011100:intron 30.0%
CATTTATACACCAAAAAACC+TGG - chr1_1:16749222-16749241 Msa0011100:intron 30.0%
TCTTAATCATGTTTGCACAT+AGG - chr1_1:16749363-16749382 Msa0011100:intron 30.0%
CATGCTATTAGAGATTCATT+TGG - chr1_1:16749480-16749499 Msa0011100:intron 30.0%
TTGCTGGATAATTCTAAACT+CGG - chr1_1:16749543-16749562 Msa0011100:CDS 30.0%
TTGTATGTGTTCTTCAACTT+AGG - chr1_1:16749606-16749625 Msa0011100:intron 30.0%
! GCTCTTTTCATAAGCTATTT+TGG - chr1_1:16749741-16749760 Msa0011100:CDS 30.0%
AACTCTTGTACTTAATGTCA+TGG - chr1_1:16749935-16749954 Msa0011100:intron 30.0%
!! ATTTTGATAGATCATGGGAT+TGG + chr1_1:16750021-16750040 None:intergenic 30.0%
!! GGACAATTTTGATAGATCAT+GGG + chr1_1:16750026-16750045 None:intergenic 30.0%
!! AGGACAATTTTGATAGATCA+TGG + chr1_1:16750027-16750046 None:intergenic 30.0%
ATGATCTATCAAAATTGTCC+TGG - chr1_1:16750026-16750045 Msa0011100:intron 30.0%
CAGGCATTAAATAATTCTGA+AGG + chr1_1:16750408-16750427 None:intergenic 30.0%
! ATTTAATGCCTGATGATGAT+CGG - chr1_1:16750416-16750435 Msa0011100:intron 30.0%
! TTCTTCTTCTAAAGAAGACA+CGG - chr1_1:16750558-16750577 Msa0011100:intron 30.0%
! AAGAATTAGAAACGGCTTTT+TGG - chr1_1:16750587-16750606 Msa0011100:intron 30.0%
AAGAGACAATTTCTATCAAG+CGG - chr1_1:16750696-16750715 Msa0011100:CDS 30.0%
ATGTGATAACATGTTAAAGG+GGG + chr1_1:16750959-16750978 None:intergenic 30.0%
ATCACATTCTACAAATAGCT+CGG - chr1_1:16750972-16750991 Msa0011100:intron 30.0%
! AGAAGTAATATCCTTTTCGA+GGG + chr1_1:16751037-16751056 None:intergenic 30.0%
! AAGAAGTAATATCCTTTTCG+AGG + chr1_1:16751038-16751057 None:intergenic 30.0%
AAGTATGATGAGAAAACACA+AGG - chr1_1:16751123-16751142 Msa0011100:CDS 30.0%
ATCAGGAGAAATTCCATTTA+AGG + chr1_1:16751157-16751176 None:intergenic 30.0%
AAATGGAATTTCTCCTGATA+AGG - chr1_1:16751158-16751177 Msa0011100:CDS 30.0%
TTAATCTTGCTGGAAAAACT+TGG + chr1_1:16751195-16751214 None:intergenic 30.0%
!! TTTTAAAGGGTTAATCTTGC+TGG + chr1_1:16751205-16751224 None:intergenic 30.0%
!!! GCTTTTTTGGAAAAGATATC+CGG + chr1_1:16751243-16751262 None:intergenic 30.0%
GAAATTCTTACCGCAATTTA+AGG - chr1_1:16751332-16751351 Msa0011100:CDS 30.0%
ACAATCAAAAGTCTGTGAAT+GGG - chr1_1:16751481-16751500 Msa0011100:CDS 30.0%
ATGTAACAACTAAATCTCCA+AGG - chr1_1:16751607-16751626 Msa0011100:CDS 30.0%
TGTAACAACTAAATCTCCAA+GGG - chr1_1:16751608-16751627 Msa0011100:CDS 30.0%
TTTAACAACAGCACATTCTT+TGG + chr1_1:16751870-16751889 None:intergenic 30.0%
TGCTGTTGTTAAAAAAGCTT+GGG - chr1_1:16751877-16751896 Msa0011100:CDS 30.0%
ACTATTGGAAGAAGCAAAAA+TGG - chr1_1:16751905-16751924 Msa0011100:CDS 30.0%
TGCAGATTAGATATAGAAAC+TGG + chr1_1:16752171-16752190 None:intergenic 30.0%
AGTTTCTATATCTAATCTGC+AGG - chr1_1:16752170-16752189 Msa0011100:CDS 30.0%
! ACACGAGAAAATAGATTTTG+TGG - chr1_1:16752408-16752427 Msa0011100:CDS 30.0%
AGGTTAAATGATACAATAGG+GGG + chr1_1:16752493-16752512 None:intergenic 30.0%
CCAAGGTTAAATGATACAAT+AGG + chr1_1:16752496-16752515 None:intergenic 30.0%
CCTATTGTATCATTTAACCT+TGG - chr1_1:16752493-16752512 Msa0011100:CDS 30.0%
TAAATTTAGTTAAAGGACGC+TGG + chr1_1:16752588-16752607 None:intergenic 30.0%
ATTGACGTTGTTAAACACAA+AGG + chr1_1:16752655-16752674 None:intergenic 30.0%
TGTACACAAATTTGTAACAG+AGG - chr1_1:16752767-16752786 Msa0011100:CDS 30.0%
! AAAAATGAAGGTTGGTTCAA+AGG - chr1_1:16752796-16752815 Msa0011100:CDS 30.0%
AATAAAGACAACTACATCAG+GGG + chr1_1:16752906-16752925 None:intergenic 30.0%
! CGATGTGAAATTTTTCGTAA+AGG - chr1_1:16753086-16753105 Msa0011100:intron 30.0%
AGTATTTGATATCCTCAATG+AGG - chr1_1:16753127-16753146 Msa0011100:intron 30.0%
! CATTCAATCTTTGAAAGGTA+TGG + chr1_1:16753176-16753195 None:intergenic 30.0%
CATAGCATTCAATCTTTGAA+AGG + chr1_1:16753181-16753200 None:intergenic 30.0%
ATGAACATCTGTCATATAGA+AGG + chr1_1:16753352-16753371 None:intergenic 30.0%
ATCCATGCCTTGAAATAATT+TGG - chr1_1:16753513-16753532 Msa0011100:intron 30.0%
TACCAAATTATTTCAAGGCA+TGG + chr1_1:16753518-16753537 None:intergenic 30.0%
AGCATCATAAACACTTCTTT+AGG - chr1_1:16753688-16753707 Msa0011100:intron 30.0%
!!! AAACCCTTGTTTTTGATACA+AGG + chr1_1:16753730-16753749 None:intergenic 30.0%
!! AAATTTTGTTTGGGATGACA+TGG + chr1_1:16753838-16753857 None:intergenic 30.0%
CACATGTTCTTGATGTTTAT+GGG + chr1_1:16753955-16753974 None:intergenic 30.0%
TCACATGTTCTTGATGTTTA+TGG + chr1_1:16753956-16753975 None:intergenic 30.0%
AACATCAAGAACATGTGATA+TGG - chr1_1:16753958-16753977 Msa0011100:intron 30.0%
ACATCAAGAACATGTGATAT+GGG - chr1_1:16753959-16753978 Msa0011100:intron 30.0%
GTCTTTAATAACATGCTAGA+CGG + chr1_1:16754055-16754074 None:intergenic 30.0%
AAACAAACTAGAGTAGACTA+GGG - chr1_1:16754075-16754094 Msa0011100:intron 30.0%
TCATGCGTTCATTAATATCA+AGG + chr1_1:16754326-16754345 None:intergenic 30.0%
GTCATTAGATAATAGCATCA+AGG + chr1_1:16754386-16754405 None:intergenic 30.0%
TAATGACAAAAGAAAACTGC+AGG - chr1_1:16754399-16754418 Msa0011100:intron 30.0%
TTCTGCTCGATTAGAATTAA+AGG - chr1_1:16754501-16754520 Msa0011100:intron 30.0%
CTTCGGTAAACAAATCATAT+TGG - chr1_1:16754540-16754559 Msa0011100:intron 30.0%
CAAACTTAGCATAGCTTAAA+GGG + chr1_1:16754611-16754630 None:intergenic 30.0%
ACAAACTTAGCATAGCTTAA+AGG + chr1_1:16754612-16754631 None:intergenic 30.0%
CCAAAATCATAATTCAGCAA+TGG + chr1_1:16754642-16754661 None:intergenic 30.0%
! CCATTGCTGAATTATGATTT+TGG - chr1_1:16754639-16754658 Msa0011100:intron 30.0%
!! AAACTTGTTAACAGTTGGAA+GGG + chr1_1:16754844-16754863 None:intergenic 30.0%
! TCTTGTTCTTCATTTTCAGA+AGG + chr1_1:16754946-16754965 None:intergenic 30.0%
GGTAGTTTAACTAACTCCAA+TGG - chr1_1:16747838-16747857 Msa0011100:three_prime_UTR 35.0%
AATCTATTGTTGGCGAAGAA+TGG + chr1_1:16747938-16747957 None:intergenic 35.0%
AGTATCAAAGGAAAGGAAGA+AGG - chr1_1:16747981-16748000 Msa0011100:three_prime_UTR 35.0%
GAAGGTGAATGAAAATGACT+TGG + chr1_1:16748050-16748069 None:intergenic 35.0%
!! AGTCATTTTCATTCACCTTC+GGG - chr1_1:16748050-16748069 Msa0011100:CDS 35.0%
GTTATGTTAGGACAGAACTT+AGG - chr1_1:16748395-16748414 Msa0011100:intron 35.0%
CACAATTAGAGAGAAAGTTC+AGG - chr1_1:16748601-16748620 Msa0011100:intron 35.0%
AAGGATTGTAATGTGGGAAT+TGG + chr1_1:16749124-16749143 None:intergenic 35.0%
AGATTCTAGCCCATTTAACA+TGG + chr1_1:16749162-16749181 None:intergenic 35.0%
!! GTTTCTCAAGACTTGTTGTT+GGG - chr1_1:16749318-16749337 Msa0011100:intron 35.0%
CTAATAGCATGCATCAAGAT+TGG + chr1_1:16749471-16749490 None:intergenic 35.0%
TATGATTTAGTTGGCATTGC+TGG - chr1_1:16749527-16749546 Msa0011100:CDS 35.0%
ATAAGTTGTTTGCCCAAGTA+GGG + chr1_1:16749632-16749651 None:intergenic 35.0%
AATAAGTTGTTTGCCCAAGT+AGG + chr1_1:16749633-16749652 None:intergenic 35.0%
AAGCTCAAATAAGTCAATCC+AGG - chr1_1:16749852-16749871 Msa0011100:CDS 35.0%
ATCTATCAAAATTGTCCTGG+AGG - chr1_1:16750029-16750048 Msa0011100:intron 35.0%
TCTATCAAAATTGTCCTGGA+GGG - chr1_1:16750030-16750049 Msa0011100:intron 35.0%
TAATGCAGAATGAAGCCTTT+CGG + chr1_1:16750113-16750132 None:intergenic 35.0%
AAGGCTTCATTCTGCATTAA+TGG - chr1_1:16750114-16750133 Msa0011100:intron 35.0%
AAGAAAGGGGTTCATAATTG+AGG + chr1_1:16750293-16750312 None:intergenic 35.0%
! TTTCATCTCGCTTCTGAAAA+CGG + chr1_1:16750359-16750378 None:intergenic 35.0%
! TTTTCAGAAGCGAGATGAAA+AGG - chr1_1:16750359-16750378 Msa0011100:intron 35.0%
ATGATCGGAGCTTAAATGTA+TGG - chr1_1:16750431-16750450 Msa0011100:intron 35.0%
AAGAATGTCTGCTATGATTC+TGG - chr1_1:16750472-16750491 Msa0011100:CDS 35.0%
TTAGCAAATAGTGTAGGACA+GGG + chr1_1:16750520-16750539 None:intergenic 35.0%
ATTAGCAAATAGTGTAGGAC+AGG + chr1_1:16750521-16750540 None:intergenic 35.0%
! GTCCTACACTATTTGCTAAT+TGG - chr1_1:16750521-16750540 Msa0011100:CDS 35.0%
CACCAATTAGCAAATAGTGT+AGG + chr1_1:16750526-16750545 None:intergenic 35.0%
GGAGTCTGAAGAATTAGAAA+CGG - chr1_1:16750579-16750598 Msa0011100:intron 35.0%
CTAACGTGGTTACTAGATAA+AGG - chr1_1:16750637-16750656 Msa0011100:CDS 35.0%
GAAATTGTCTCTTACAGTCT+CGG + chr1_1:16750689-16750708 None:intergenic 35.0%
AGATGAAATAGCATCGTTCA+CGG + chr1_1:16750722-16750741 None:intergenic 35.0%
ATGTTACAGATAGCAGCAAA+AGG - chr1_1:16750821-16750840 Msa0011100:intron 35.0%
! TCCTTGCTATGAAGATAGAT+AGG + chr1_1:16750847-16750866 None:intergenic 35.0%
ATCTATCTTCATAGCAAGGA+AGG - chr1_1:16750847-16750866 Msa0011100:intron 35.0%
AACATGTTAAAGGGGGTAAT+TGG + chr1_1:16750952-16750971 None:intergenic 35.0%
! GAGGAACTTGAGCTTTTAAA+GGG + chr1_1:16751218-16751237 None:intergenic 35.0%
!! TTTTTGGAAAAGATATCCGG+AGG + chr1_1:16751240-16751259 None:intergenic 35.0%
!!! AAATGTGGACATCGCTTTTT+TGG + chr1_1:16751256-16751275 None:intergenic 35.0%
! AAAAGCGATGTCCACATTTT+TGG - chr1_1:16751257-16751276 Msa0011100:CDS 35.0%
! AAAGCGATGTCCACATTTTT+GGG - chr1_1:16751258-16751277 Msa0011100:CDS 35.0%
TGATAATTGACATAATCGGG+AGG + chr1_1:16751300-16751319 None:intergenic 35.0%
ATAGCCATGTCCTTAAATTG+CGG + chr1_1:16751345-16751364 None:intergenic 35.0%
CAATTTAAGGACATGGCTAT+TGG - chr1_1:16751345-16751364 Msa0011100:CDS 35.0%
TGTTTCCAATGGTACTATTG+TGG - chr1_1:16751389-16751408 Msa0011100:CDS 35.0%
GTTTCCAATGGTACTATTGT+GGG - chr1_1:16751390-16751409 Msa0011100:CDS 35.0%
GCTGATCCATTTAAACTATC+AGG + chr1_1:16751417-16751436 None:intergenic 35.0%
ATTGTCATCGACCGTAATTT+CGG + chr1_1:16751466-16751485 None:intergenic 35.0%
GACAATCAAAAGTCTGTGAA+TGG - chr1_1:16751480-16751499 Msa0011100:CDS 35.0%
TCTAGTAGGACAACAGTAAA+CGG - chr1_1:16751516-16751535 Msa0011100:CDS 35.0%
TCAAGGGGAATTACATTACA+TGG - chr1_1:16751545-16751564 Msa0011100:CDS 35.0%
AAATCTCCAAGGGTTGAAAA+TGG - chr1_1:16751618-16751637 Msa0011100:CDS 35.0%
TTGTACTAGAGAAAAGGTCA+CGG - chr1_1:16751782-16751801 Msa0011100:CDS 35.0%
! GTGCTGTTGTTAAAAAAGCT+TGG - chr1_1:16751876-16751895 Msa0011100:CDS 35.0%
GCTGTTGTTAAAAAAGCTTG+GGG - chr1_1:16751878-16751897 Msa0011100:CDS 35.0%
!!! TCATTTTCTCTTGGTGATGA+AGG + chr1_1:16752206-16752225 None:intergenic 35.0%
AACTCAAGTACCTTGTATCA+TGG + chr1_1:16752305-16752324 None:intergenic 35.0%
!!! AATAGATTTTGTGGCTTGCT+TGG - chr1_1:16752417-16752436 Msa0011100:CDS 35.0%
!!! ATAGATTTTGTGGCTTGCTT+GGG - chr1_1:16752418-16752437 Msa0011100:CDS 35.0%
GGTTAAATGATACAATAGGG+GGG + chr1_1:16752492-16752511 None:intergenic 35.0%
ATGAGAAGTCAGAAAACCAA+GGG + chr1_1:16752521-16752540 None:intergenic 35.0%
TATGAGAAGTCAGAAAACCA+AGG + chr1_1:16752522-16752541 None:intergenic 35.0%
ACACAAATTTGTAACAGAGG+TGG - chr1_1:16752770-16752789 Msa0011100:CDS 35.0%
GACTTAAGACAAGTCATTCA+CGG - chr1_1:16753017-16753036 Msa0011100:intron 35.0%
ATGGTGTCTACATTACTCTA+AGG - chr1_1:16753054-16753073 Msa0011100:intron 35.0%
GTAAAGGTAAAGCAATTCCA+GGG - chr1_1:16753102-16753121 Msa0011100:intron 35.0%
AGGATATCAAATACTTTCCC+TGG + chr1_1:16753122-16753141 None:intergenic 35.0%
ATTTGATATCCTCAATGAGG+TGG - chr1_1:16753130-16753149 Msa0011100:intron 35.0%
TGACACTCACTTTGGTTATA+AGG + chr1_1:16753214-16753233 None:intergenic 35.0%
ACATAAAGTGACACTCACTT+TGG + chr1_1:16753222-16753241 None:intergenic 35.0%
TGCACCTTGTATCAAAAACA+AGG - chr1_1:16753723-16753742 Msa0011100:intron 35.0%
GCACCTTGTATCAAAAACAA+GGG - chr1_1:16753724-16753743 Msa0011100:intron 35.0%
TTGATGTTTATGGGCATATG+TGG + chr1_1:16753946-16753965 None:intergenic 35.0%
CAAACAAACTAGAGTAGACT+AGG - chr1_1:16754074-16754093 Msa0011100:intron 35.0%
!! GCATTGATTCAAATGCATGT+AGG + chr1_1:16754114-16754133 None:intergenic 35.0%
GCGTTCATTAATATCAAGGA+AGG + chr1_1:16754322-16754341 None:intergenic 35.0%
ATAGGGGTAAACAATATGCA+CGG + chr1_1:16754439-16754458 None:intergenic 35.0%
AATTCTAATCGAGCAGAATC+TGG + chr1_1:16754499-16754518 None:intergenic 35.0%
GAAACATATTCAGGCATAGA+AGG + chr1_1:16754589-16754608 None:intergenic 35.0%
GCTTAAAGGGAAACATATTC+AGG + chr1_1:16754598-16754617 None:intergenic 35.0%
AAGCTATGCTAAGTTTGTCT+TGG - chr1_1:16754614-16754633 Msa0011100:intron 35.0%
!! AACTTGTTAACAGTTGGAAG+GGG + chr1_1:16754843-16754862 None:intergenic 35.0%
!! CAAACTTGTTAACAGTTGGA+AGG + chr1_1:16754845-16754864 None:intergenic 35.0%
!! TGGTCAAACTTGTTAACAGT+TGG + chr1_1:16754849-16754868 None:intergenic 35.0%
GTTAACAAGTTTGACCAAAC+AGG - chr1_1:16754852-16754871 Msa0011100:intron 35.0%
TTGGCTTCCATTGTAAAGAT+AGG - chr1_1:16755027-16755046 Msa0011100:CDS 35.0%
TGGCTTCCATTGTAAAGATA+GGG - chr1_1:16755028-16755047 Msa0011100:CDS 35.0%
ATGTCGATACATGCTACCAT+TGG + chr1_1:16747857-16747876 None:intergenic 40.0%
! AATGGTAGCATGTATCGACA+TGG - chr1_1:16747856-16747875 Msa0011100:three_prime_UTR 40.0%
GAAGAGTTGGAGAACAAACA+TGG + chr1_1:16747914-16747933 None:intergenic 40.0%
TTCGCCAACAATAGATTCCT+GGG - chr1_1:16747941-16747960 Msa0011100:three_prime_UTR 40.0%
AACAATAGATTCCTGGGCTT+GGG - chr1_1:16747947-16747966 Msa0011100:three_prime_UTR 40.0%
!! GGCTTTGAGTATCAAAGGAA+AGG - chr1_1:16747974-16747993 Msa0011100:three_prime_UTR 40.0%
GGAAAGGAAGAAGGATACTA+AGG - chr1_1:16747990-16748009 Msa0011100:exon 40.0%
CGAGAATCAAGTAAGCGTAA+CGG - chr1_1:16748520-16748539 Msa0011100:intron 40.0%
AGATGATAGAAACCAGGCTT+AGG - chr1_1:16748642-16748661 Msa0011100:intron 40.0%
ATTATCCCACTAAGTGGTGT+TGG + chr1_1:16748836-16748855 None:intergenic 40.0%
CGGGTTAAGGATTGTAATGT+GGG + chr1_1:16749130-16749149 None:intergenic 40.0%
TCGGGTTAAGGATTGTAATG+TGG + chr1_1:16749131-16749150 None:intergenic 40.0%
ATGGTATTAGAGTCGGGTTA+AGG + chr1_1:16749143-16749162 None:intergenic 40.0%
!! GGTTTCTCAAGACTTGTTGT+TGG - chr1_1:16749317-16749336 Msa0011100:intron 40.0%
GGGTAACTCTCATAGTAGTA+TGG - chr1_1:16749338-16749357 Msa0011100:intron 40.0%
! GTTTTCTTCTCTGCGCATTT+TGG - chr1_1:16749396-16749415 Msa0011100:intron 40.0%
AAGCGCTTGTGACACTATTT+GGG + chr1_1:16749820-16749839 None:intergenic 40.0%
TAAGCGCTTGTGACACTATT+TGG + chr1_1:16749821-16749840 None:intergenic 40.0%
TGATAGATCATGGGATTGGA+AGG + chr1_1:16750017-16750036 None:intergenic 40.0%
CTATCAAAATTGTCCTGGAG+GGG - chr1_1:16750031-16750050 Msa0011100:intron 40.0%
! GGATCTTTAGAAACTCCGAA+AGG - chr1_1:16750095-16750114 Msa0011100:intron 40.0%
! CATTATGCAATCCGTTGACT+GGG - chr1_1:16750140-16750159 Msa0011100:intron 40.0%
! ATTATGCAATCCGTTGACTG+GGG - chr1_1:16750141-16750160 Msa0011100:intron 40.0%
AGTTTCTGTTCTTGGATGCA+TGG - chr1_1:16750222-16750241 Msa0011100:intron 40.0%
ATGGTATCCCTTGTGAACAA+AGG - chr1_1:16750241-16750260 Msa0011100:intron 40.0%
TAATCTCTGCGTCAAGAAAG+GGG + chr1_1:16750306-16750325 None:intergenic 40.0%
CTAATCTCTGCGTCAAGAAA+GGG + chr1_1:16750307-16750326 None:intergenic 40.0%
AAGGGCAACATGTAAACTCT+CGG + chr1_1:16750389-16750408 None:intergenic 40.0%
TTTAAGCTCCGATCATCATC+AGG + chr1_1:16750427-16750446 None:intergenic 40.0%
ATCGGAGCTTAAATGTATGG+AGG - chr1_1:16750434-16750453 Msa0011100:intron 40.0%
!!! TATGATTCTGGTTTTCCTCG+TGG - chr1_1:16750484-16750503 Msa0011100:CDS 40.0%
! TTAGAAACGGCTTTTTGGAC+TGG - chr1_1:16750592-16750611 Msa0011100:intron 40.0%
TAACAGAAGAAGGACTAACG+TGG - chr1_1:16750623-16750642 Msa0011100:intron 40.0%
!! GTGAACGATGCTATTTCATC+TGG - chr1_1:16750721-16750740 Msa0011100:CDS 40.0%
GTGCAGTCATAACTTCAACT+GGG + chr1_1:16750768-16750787 None:intergenic 40.0%
AGTTATGACTGCACCAACAA+TGG - chr1_1:16750774-16750793 Msa0011100:intron 40.0%
GCCTATCTATCTTCATAGCA+AGG - chr1_1:16750843-16750862 Msa0011100:intron 40.0%
TTCATAGCAAGGAAGGAGTT+TGG - chr1_1:16750854-16750873 Msa0011100:intron 40.0%
AGTTTGGAGATCATCTGCTA+TGG - chr1_1:16750870-16750889 Msa0011100:intron 40.0%
ATGTTAAAGGGGGTAATTGG+TGG + chr1_1:16750949-16750968 None:intergenic 40.0%
!! AGTAATATCCTTTTCGAGGG+AGG + chr1_1:16751034-16751053 None:intergenic 40.0%
! CTTTTCAGAGACACTTCTGT+CGG + chr1_1:16751103-16751122 None:intergenic 40.0%
CAAGGTAATGCAGCCTTAAA+TGG - chr1_1:16751141-16751160 Msa0011100:CDS 40.0%
GGAATTTCTCCTGATAAGGA+AGG - chr1_1:16751162-16751181 Msa0011100:CDS 40.0%
GGAAAAGATCCTTCCTTATC+AGG + chr1_1:16751174-16751193 None:intergenic 40.0%
! GGAGGAACTTGAGCTTTTAA+AGG + chr1_1:16751219-16751238 None:intergenic 40.0%
CTTACCGCAATTTAAGGACA+TGG - chr1_1:16751338-16751357 Msa0011100:CDS 40.0%
GTGGGTCCTGATAGTTTAAA+TGG - chr1_1:16751408-16751427 Msa0011100:CDS 40.0%
TTGTCATCGACCGTAATTTC+GGG + chr1_1:16751465-16751484 None:intergenic 40.0%
!! GGAATGCTTCTAGTTCTAGT+AGG - chr1_1:16751502-16751521 Msa0011100:CDS 40.0%
ACAGTAAACGGATCAAGTCA+AGG - chr1_1:16751528-16751547 Msa0011100:CDS 40.0%
CAGTAAACGGATCAAGTCAA+GGG - chr1_1:16751529-16751548 Msa0011100:CDS 40.0%
AGTAAACGGATCAAGTCAAG+GGG - chr1_1:16751530-16751549 Msa0011100:CDS 40.0%
! ACTGTTCCATTTTCAACCCT+TGG + chr1_1:16751627-16751646 None:intergenic 40.0%
GGTTGAAAATGGAACAGTCA+AGG - chr1_1:16751629-16751648 Msa0011100:CDS 40.0%
AAAATGGAACAGTCAAGGCT+GGG - chr1_1:16751634-16751653 Msa0011100:CDS 40.0%
AAAGAAAGCCGAGATGTTCT+TGG - chr1_1:16751740-16751759 Msa0011100:CDS 40.0%
AAAGGTCACGGAATCTTCTT+TGG - chr1_1:16751794-16751813 Msa0011100:CDS 40.0%
GAATCCAAAACCTGGAATTC+TGG + chr1_1:16752265-16752284 None:intergenic 40.0%
CCTTGTATCATGGCTATAGA+AGG + chr1_1:16752295-16752314 None:intergenic 40.0%
CCTTCTATAGCCATGATACA+AGG - chr1_1:16752292-16752311 Msa0011100:CDS 40.0%
CGTGTAGATCACTGAATCAA+AGG + chr1_1:16752393-16752412 None:intergenic 40.0%
!!! TAGATTTTGTGGCTTGCTTG+GGG - chr1_1:16752419-16752438 Msa0011100:CDS 40.0%
TCATTTAACCTTGGTTCCCT+TGG - chr1_1:16752502-16752521 Msa0011100:CDS 40.0%
!! CAGAGGTGGACTAAAAATGA+AGG - chr1_1:16752784-16752803 Msa0011100:CDS 40.0%
!! GGTGGACTAAAAATGAAGGT+TGG - chr1_1:16752788-16752807 Msa0011100:CDS 40.0%
GTATGTAGTTTGACGACTAC+AGG - chr1_1:16752991-16753010 Msa0011100:intron 40.0%
CGTAAAGGTAAAGCAATTCC+AGG - chr1_1:16753101-16753120 Msa0011100:intron 40.0%
TCAATGAGGTGGTTGTTGAT+CGG - chr1_1:16753141-16753160 Msa0011100:intron 40.0%
GACAGATGTTCATGTCTTTC+AGG - chr1_1:16753359-16753378 Msa0011100:intron 40.0%
! GTTCATGTCTTTCAGGTACA+AGG - chr1_1:16753366-16753385 Msa0011100:intron 40.0%
AGTCATTGTTGGAACTCCTA+CGG - chr1_1:16753395-16753414 Msa0011100:intron 40.0%
!! GGGAAGTACTGCATATTCTA+CGG - chr1_1:16753416-16753435 Msa0011100:intron 40.0%
AAACTCCTACAAGCTTACCA+TGG + chr1_1:16753454-16753473 None:intergenic 40.0%
TATTTCAAGGCATGGATACC+AGG + chr1_1:16753510-16753529 None:intergenic 40.0%
AGACTCATGGTCAATCATGA+AGG - chr1_1:16753616-16753635 Msa0011100:intron 40.0%
! TGTTTGGGATGACATGGAAT+TGG + chr1_1:16753832-16753851 None:intergenic 40.0%
TAGTCGTCAAATTGATGTGC+TGG + chr1_1:16753868-16753887 None:intergenic 40.0%
AACTAGAGTAGACTAGGGTT+TGG - chr1_1:16754080-16754099 Msa0011100:intron 40.0%
!! CTGGTATTGATGCAAATGAC+TGG - chr1_1:16754176-16754195 Msa0011100:intron 40.0%
AACAATATGCACGGAACGTT+TGG + chr1_1:16754430-16754449 None:intergenic 40.0%
ACAGTGAATGTGGACAGATA+GGG + chr1_1:16754456-16754475 None:intergenic 40.0%
GGTCTAAATGACAGTGAATG+TGG + chr1_1:16754466-16754485 None:intergenic 40.0%
GATGCTCACTCATATGTATC+CGG + chr1_1:16754821-16754840 None:intergenic 40.0%
AGTTTGACCAAACAGGTGAT+TGG - chr1_1:16754859-16754878 Msa0011100:intron 40.0%
GGCAAACCCTATCTTTACAA+TGG + chr1_1:16755037-16755056 None:intergenic 40.0%
GTAAAGATAGGGTTTGCCAA+TGG - chr1_1:16755039-16755058 Msa0011100:CDS 40.0%
CTTCGCCAACAATAGATTCC+TGG - chr1_1:16747940-16747959 Msa0011100:three_prime_UTR 45.0%
CAAGCCCAGGAATCTATTGT+TGG + chr1_1:16747948-16747967 None:intergenic 45.0%
CAACAATAGATTCCTGGGCT+TGG - chr1_1:16747946-16747965 Msa0011100:three_prime_UTR 45.0%
!! GCTTGGGCTTTGAGTATCAA+AGG - chr1_1:16747969-16747988 Msa0011100:three_prime_UTR 45.0%
CGCTTACTTGATTCTCGTGT+TGG + chr1_1:16748517-16748536 None:intergenic 45.0%
! AAGTAAGCGTAACGGAGATG+AGG - chr1_1:16748528-16748547 Msa0011100:intron 45.0%
CGGAGATGAGGATATTGCAT+TGG - chr1_1:16748540-16748559 Msa0011100:intron 45.0%
TGATAGAAACCAGGCTTAGG+TGG - chr1_1:16748645-16748664 Msa0011100:intron 45.0%
AGTACGAAGAGCAGATCAGA+TGG - chr1_1:16748702-16748721 Msa0011100:intron 45.0%
GTCAGACCAAAAGAGGTAGA+TGG - chr1_1:16748731-16748750 Msa0011100:intron 45.0%
ATGTAGCCAACACCACTTAG+TGG - chr1_1:16748827-16748846 Msa0011100:intron 45.0%
TGTAGCCAACACCACTTAGT+GGG - chr1_1:16748828-16748847 Msa0011100:intron 45.0%
CCAAGCATTATCCCACTAAG+TGG + chr1_1:16748842-16748861 None:intergenic 45.0%
CCACTTAGTGGGATAATGCT+TGG - chr1_1:16748839-16748858 Msa0011100:intron 45.0%
ACCCATACTCACATCTATCC+TGG - chr1_1:16748921-16748940 Msa0011100:intron 45.0%
CCCAGGATAGATGTGAGTAT+GGG + chr1_1:16748925-16748944 None:intergenic 45.0%
CCCATACTCACATCTATCCT+GGG - chr1_1:16748922-16748941 Msa0011100:intron 45.0%
TCCCAGGATAGATGTGAGTA+TGG + chr1_1:16748926-16748945 None:intergenic 45.0%
AACTCGGGAACTAAGCAATG+TGG - chr1_1:16749036-16749055 Msa0011100:intron 45.0%
ACTCGGGAACTAAGCAATGT+GGG - chr1_1:16749037-16749056 Msa0011100:intron 45.0%
ACCAAAAAACCTGGGAACCT+CGG - chr1_1:16749231-16749250 Msa0011100:intron 45.0%
ATTGAAGTCTCACATTGCCG+AGG + chr1_1:16749251-16749270 None:intergenic 45.0%
TCTTCAACTTAGGCCCTACT+TGG - chr1_1:16749616-16749635 Msa0011100:intron 45.0%
CTTCAACTTAGGCCCTACTT+GGG - chr1_1:16749617-16749636 Msa0011100:intron 45.0%
CGGAAATTCATTTAAGGGCC+TGG + chr1_1:16749873-16749892 None:intergenic 45.0%
TCGACTTCAGCAATATCACC+CGG + chr1_1:16750064-16750083 None:intergenic 45.0%
CTGAAGTCGAGGCATATTGT+AGG - chr1_1:16750074-16750093 Msa0011100:intron 45.0%
GCATTATGCAATCCGTTGAC+TGG - chr1_1:16750139-16750158 Msa0011100:intron 45.0%
ACACTACATTCCCCAGTCAA+CGG + chr1_1:16750154-16750173 None:intergenic 45.0%
GGAATGTAGTGTCTCGTATG+AGG - chr1_1:16750162-16750181 Msa0011100:intron 45.0%
TATCCCTTGTGAACAAAGGC+AGG - chr1_1:16750245-16750264 Msa0011100:intron 45.0%
ATCCCTTGTGAACAAAGGCA+GGG - chr1_1:16750246-16750265 Msa0011100:intron 45.0%
GCTAATCTCTGCGTCAAGAA+AGG + chr1_1:16750308-16750327 None:intergenic 45.0%
! TTCTGAAAACGGCAAGTGGA+GGG + chr1_1:16750348-16750367 None:intergenic 45.0%
GGTGGTCAAGTAACAGAAGA+AGG - chr1_1:16750613-16750632 Msa0011100:intron 45.0%
GGTGCAGTCATAACTTCAAC+TGG + chr1_1:16750769-16750788 None:intergenic 45.0%
CATCTGCTATGGTGTCTAGA+TGG - chr1_1:16750881-16750900 Msa0011100:intron 45.0%
AGAAAGATCCTCCCTCGAAA+AGG - chr1_1:16751023-16751042 Msa0011100:CDS 45.0%
AAAAGCTCAAGTTCCTCCTC+CGG - chr1_1:16751221-16751240 Msa0011100:CDS 45.0%
TTGGAAAAGATATCCGGAGG+AGG + chr1_1:16751237-16751256 None:intergenic 45.0%
!!! TGTCCACATTTTTGGGTAGC+AGG - chr1_1:16751265-16751284 Msa0011100:CDS 45.0%
CTTCCTGCTACCCAAAAATG+TGG + chr1_1:16751271-16751290 None:intergenic 45.0%
ATGGCTATTGGAAGACGTGA+AGG - chr1_1:16751357-16751376 Msa0011100:CDS 45.0%
! GGAGATGTGGTTGTTTCCAA+TGG - chr1_1:16751378-16751397 Msa0011100:CDS 45.0%
AGGACCCACAATAGTACCAT+TGG + chr1_1:16751397-16751416 None:intergenic 45.0%
GCTCATGTTGATCATCCATC+TGG - chr1_1:16751435-16751454 Msa0011100:CDS 45.0%
ATCTGGAGAGCCCGAAATTA+CGG - chr1_1:16751452-16751471 Msa0011100:CDS 45.0%
GAAAATGGAACAGTCAAGGC+TGG - chr1_1:16751633-16751652 Msa0011100:CDS 45.0%
AGCTTTACGCGATGAAGAGT+TGG - chr1_1:16751659-16751678 Msa0011100:CDS 45.0%
GCTTTACGCGATGAAGAGTT+GGG - chr1_1:16751660-16751679 Msa0011100:CDS 45.0%
AAGCCGAGATGTTCTTGGTT+CGG - chr1_1:16751745-16751764 Msa0011100:CDS 45.0%
TGTCCGAACCAAGAACATCT+CGG + chr1_1:16751751-16751770 None:intergenic 45.0%
!! ATGTTCTTGGTTCGGACAGA+TGG - chr1_1:16751753-16751772 Msa0011100:CDS 45.0%
CTCAGCAACAGATGCTTATG+TGG - chr1_1:16751835-16751854 Msa0011100:CDS 45.0%
AAAGCTTGGGGACGAACTAT+TGG - chr1_1:16751890-16751909 Msa0011100:CDS 45.0%
GCAAGTACATCATGCACATC+AGG + chr1_1:16752243-16752262 None:intergenic 45.0%
GATGTACTTGCCAGAATTCC+AGG - chr1_1:16752252-16752271 Msa0011100:CDS 45.0%
! CTTGCCAGAATTCCAGGTTT+TGG - chr1_1:16752258-16752277 Msa0011100:CDS 45.0%
!!! AGATTTTGTGGCTTGCTTGG+GGG - chr1_1:16752420-16752439 Msa0011100:CDS 45.0%
TCAGAAAACCAAGGGAACCA+AGG + chr1_1:16752513-16752532 None:intergenic 45.0%
CACGGAAATACTTCACGAGA+TGG - chr1_1:16753035-16753054 Msa0011100:intron 45.0%
GATCAACAACCACCTCATTG+AGG + chr1_1:16753142-16753161 None:intergenic 45.0%
CAATGAGGTGGTTGTTGATC+GGG - chr1_1:16753142-16753161 Msa0011100:intron 45.0%
AATGAGGTGGTTGTTGATCG+GGG - chr1_1:16753143-16753162 Msa0011100:intron 45.0%
! GTCTTTCAGGTACAAGGTGA+TGG - chr1_1:16753372-16753391 Msa0011100:intron 45.0%
!! CAAGGTGATGGAGTCATTGT+TGG - chr1_1:16753384-16753403 Msa0011100:intron 45.0%
GTCATTGTTGGAACTCCTAC+GGG - chr1_1:16753396-16753415 Msa0011100:intron 45.0%
GAATATGCAGTACTTCCCGT+AGG + chr1_1:16753414-16753433 None:intergenic 45.0%
AGGTTCCATGGTAAGCTTGT+AGG - chr1_1:16753446-16753465 Msa0011100:intron 45.0%
GGCGCTATGAATAAGACTCA+TGG - chr1_1:16753603-16753622 Msa0011100:intron 45.0%
CTCAAAGACCTCTACTTAGC+TGG - chr1_1:16754011-16754030 Msa0011100:intron 45.0%
ATATGCACGGAACGTTTGGA+TGG + chr1_1:16754426-16754445 None:intergenic 45.0%
CAGTGAATGTGGACAGATAG+GGG + chr1_1:16754455-16754474 None:intergenic 45.0%
GACAGTGAATGTGGACAGAT+AGG + chr1_1:16754457-16754476 None:intergenic 45.0%
! GCAGAATCTGGAAGTATGAC+AGG + chr1_1:16754487-16754506 None:intergenic 45.0%
GCGTTACTTCTAGCATCTTC+TGG + chr1_1:16754744-16754763 None:intergenic 45.0%
AAGATGCTAGAAGTAACGCG+TGG - chr1_1:16754745-16754764 Msa0011100:intron 45.0%
AGATGCTAGAAGTAACGCGT+GGG - chr1_1:16754746-16754765 Msa0011100:intron 45.0%
AGAAGACAACAGCTCTCAAG+AGG - chr1_1:16754786-16754805 Msa0011100:intron 45.0%
! GCTTGATTCGCTGCCTAAAT+TGG - chr1_1:16754889-16754908 Msa0011100:CDS 45.0%
CAAGCCTCTCGTTCCAATTT+AGG + chr1_1:16754905-16754924 None:intergenic 45.0%
GAACGAGAGGCTTGATCAAA+AGG - chr1_1:16754911-16754930 Msa0011100:CDS 45.0%
GGCGAAGAATGGAGAAGAGT+TGG + chr1_1:16747927-16747946 None:intergenic 50.0%
CATGTCAAACCACCTAAGCC+TGG + chr1_1:16748657-16748676 None:intergenic 50.0%
ACGAAGAGCAGATCAGATGG+AGG - chr1_1:16748705-16748724 Msa0011100:intron 50.0%
GAGGAGAGTCAGACCAAAAG+AGG - chr1_1:16748724-16748743 Msa0011100:intron 50.0%
! AGGTCGCCATCTACCTCTTT+TGG + chr1_1:16748740-16748759 None:intergenic 50.0%
GTGTGAATTAGACTCGTCCC+AGG + chr1_1:16748942-16748961 None:intergenic 50.0%
TCAGCAATATCACCCGGAAC+TGG + chr1_1:16750058-16750077 None:intergenic 50.0%
GGGTGATATTGCTGAAGTCG+AGG - chr1_1:16750063-16750082 Msa0011100:intron 50.0%
GTCCCTGCCTTTGTTCACAA+GGG + chr1_1:16750251-16750270 None:intergenic 50.0%
GGGACGATGTTCTTACTGGA+AGG - chr1_1:16750266-16750285 Msa0011100:intron 50.0%
! CTTCTGAAAACGGCAAGTGG+AGG + chr1_1:16750349-16750368 None:intergenic 50.0%
! TCGCTTCTGAAAACGGCAAG+TGG + chr1_1:16750352-16750371 None:intergenic 50.0%
!!! TTCTGGTTTTCCTCGTGGTG+AGG - chr1_1:16750489-16750508 Msa0011100:CDS 50.0%
!!! TCTGGTTTTCCTCGTGGTGA+GGG - chr1_1:16750490-16750509 Msa0011100:CDS 50.0%
!! GAAACGGCTTTTTGGACTGG+TGG - chr1_1:16750595-16750614 Msa0011100:intron 50.0%
GACTGCACCAACAATGGAAC+AGG - chr1_1:16750780-16750799 Msa0011100:intron 50.0%
CTCGCAACCTGTTCCATTGT+TGG + chr1_1:16750790-16750809 None:intergenic 50.0%
CAACAATGGAACAGGTTGCG+AGG - chr1_1:16750788-16750807 Msa0011100:intron 50.0%
CTGCTATGGTGTCTAGATGG+AGG - chr1_1:16750884-16750903 Msa0011100:intron 50.0%
GATGCAACACGCAGTTCTGT+TGG - chr1_1:16751072-16751091 Msa0011100:CDS 50.0%
TGGAAGACGTGAAGGAGATG+TGG - chr1_1:16751365-16751384 Msa0011100:CDS 50.0%
GTAATTTCGGGCTCTCCAGA+TGG + chr1_1:16751453-16751472 None:intergenic 50.0%
ATTCACAACGGCAGAGACGT+CGG + chr1_1:16751577-16751596 None:intergenic 50.0%
GAAGAGTTGGGATCCCTTGA+AGG - chr1_1:16751672-16751691 Msa0011100:CDS 50.0%
CGCACACATATCGCCTTCAA+GGG + chr1_1:16751688-16751707 None:intergenic 50.0%
ACGCACACATATCGCCTTCA+AGG + chr1_1:16751689-16751708 None:intergenic 50.0%
CGATATGTGTGCGTCGTCAA+CGG - chr1_1:16751695-16751714 Msa0011100:CDS 50.0%
GATATGTGTGCGTCGTCAAC+GGG - chr1_1:16751696-16751715 Msa0011100:CDS 50.0%
GTCGTCAACGGGAGTTGTAA+GGG - chr1_1:16751707-16751726 Msa0011100:CDS 50.0%
AGCATCTGTTGCTGAGTGCT+AGG + chr1_1:16751831-16751850 None:intergenic 50.0%
GTCTGCACGAATCCAAAACC+TGG + chr1_1:16752273-16752292 None:intergenic 50.0%
!!! GATTTTGTGGCTTGCTTGGG+GGG - chr1_1:16752421-16752440 Msa0011100:CDS 50.0%
ACTGCATATTCTACGGCTGC+TGG - chr1_1:16753423-16753442 Msa0011100:intron 50.0%
! GTCACTTGGTGAGTGACAGT+GGG + chr1_1:16753579-16753598 None:intergenic 50.0%
! AGTCACTTGGTGAGTGACAG+TGG + chr1_1:16753580-16753599 None:intergenic 50.0%
TGTCACTCACCAAGTGACTG+CGG - chr1_1:16753581-16753600 Msa0011100:intron 50.0%
CTTGCACTCCAGCTAAGTAG+AGG + chr1_1:16754022-16754041 None:intergenic 50.0%
TCTCAAGAGGAGACTCAGTC+CGG - chr1_1:16754799-16754818 Msa0011100:intron 50.0%
TGCGGAACCAATCACCTGTT+TGG + chr1_1:16754869-16754888 None:intergenic 50.0%
TTAGGCAGCGAATCAAGCTG+CGG + chr1_1:16754887-16754906 None:intergenic 50.0%
GCTGCCTAAATTGGAACGAG+AGG - chr1_1:16754898-16754917 Msa0011100:CDS 50.0%
TAGATTCCTGGGCTTGGGCT+TGG - chr1_1:16747952-16747971 Msa0011100:three_prime_UTR 55.0%
AGATTCCTGGGCTTGGGCTT+GGG - chr1_1:16747953-16747972 Msa0011100:three_prime_UTR 55.0%
!!! GCCGAGGTTCCCAGGTTTTT+TGG + chr1_1:16749235-16749254 None:intergenic 55.0%
CGTCCCTGCCTTTGTTCACA+AGG + chr1_1:16750252-16750271 None:intergenic 55.0%
GGCAGGGACGATGTTCTTAC+TGG - chr1_1:16750262-16750281 Msa0011100:intron 55.0%
CGTCGTCAACGGGAGTTGTA+AGG - chr1_1:16751706-16751725 Msa0011100:CDS 55.0%
GCATATTCTACGGCTGCTGG+AGG - chr1_1:16753426-16753445 Msa0011100:intron 55.0%
! ACTTGGTGAGTGACAGTGGG+TGG + chr1_1:16753576-16753595 None:intergenic 55.0%
GTCACTCACCAAGTGACTGC+GGG - chr1_1:16753582-16753601 Msa0011100:intron 55.0%
CACCTTCGGGCTTGACTCTC+CGG - chr1_1:16748063-16748082 Msa0011100:CDS 60.0%
TACCGGAGAGTCAAGCCCGA+AGG + chr1_1:16748068-16748087 None:intergenic 60.0%
ATCCACCCTCACGCCTAGCA+TGG - chr1_1:16749089-16749108 Msa0011100:intron 60.0%
TCCACCCTCACGCCTAGCAT+GGG - chr1_1:16749090-16749109 Msa0011100:intron 60.0%
ATGCCCCATGCTAGGCGTGA+GGG + chr1_1:16749097-16749116 None:intergenic 60.0%
TCACGCCTAGCATGGGGCAT+GGG - chr1_1:16749097-16749116 Msa0011100:intron 60.0%
TTGGACCCATGCCCCATGCT+AGG + chr1_1:16749105-16749124 None:intergenic 60.0%
CTCACATTGCCGAGGTTCCC+AGG + chr1_1:16749243-16749262 None:intergenic 60.0%
CAGGGATAACCCTCACCACG+AGG + chr1_1:16750502-16750521 None:intergenic 60.0%
TACGGCTGCTGGAGGTTCCA+TGG - chr1_1:16753434-16753453 Msa0011100:intron 60.0%
TCATAGCGCCCGCAGTCACT+TGG + chr1_1:16753593-16753612 None:intergenic 60.0%
AACGCGTGGGTCTCGTTCGA+TGG - chr1_1:16754759-16754778 Msa0011100:intron 60.0%
CAAAGCCCAAGCCCAAGCCC+AGG + chr1_1:16747961-16747980 None:intergenic 65.0%
CCACCCTCACGCCTAGCATG+GGG - chr1_1:16749091-16749110 Msa0011100:intron 65.0%
CATGCCCCATGCTAGGCGTG+AGG + chr1_1:16749098-16749117 None:intergenic 65.0%
CTCACGCCTAGCATGGGGCA+TGG - chr1_1:16749096-16749115 Msa0011100:intron 65.0%
GTCCTGGAGGGGACCAGTTC+CGG - chr1_1:16750042-16750061 Msa0011100:intron 65.0%
TCCTGGAGGGGACCAGTTCC+GGG - chr1_1:16750043-16750062 Msa0011100:intron 65.0%
!! GTGGCTTGCTTGGGGGGAGA+CGG - chr1_1:16752427-16752446 Msa0011100:CDS 65.0%
CCCCATGCTAGGCGTGAGGG+TGG + chr1_1:16749094-16749113 None:intergenic 70.0%
ACCCGGAACTGGTCCCCTCC+AGG + chr1_1:16750047-16750066 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16747678 16755266 16747678 ID=Msa0011100;Name=Msa0011100
chr1_1 mRNA 16747678 16755266 16747678 ID=Msa0011100-mRNA-1;Parent=Msa0011100;Name=Msa0011100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=155|0.87|0.88|1|0.87|0.77|9|325|987
chr1_1 exon 16747678 16748206 16747678 ID=Msa0011100-mRNA-1:exon:6078;Parent=Msa0011100-mRNA-1
chr1_1 exon 16748422 16748523 16748422 ID=Msa0011100-mRNA-1:exon:6077;Parent=Msa0011100-mRNA-1
chr1_1 exon 16749489 16749563 16749489 ID=Msa0011100-mRNA-1:exon:6076;Parent=Msa0011100-mRNA-1
chr1_1 exon 16749721 16749945 16749721 ID=Msa0011100-mRNA-1:exon:6075;Parent=Msa0011100-mRNA-1
chr1_1 exon 16750458 16750542 16750458 ID=Msa0011100-mRNA-1:exon:6074;Parent=Msa0011100-mRNA-1
chr1_1 exon 16750631 16750752 16750631 ID=Msa0011100-mRNA-1:exon:6073;Parent=Msa0011100-mRNA-1
chr1_1 exon 16751018 16752940 16751018 ID=Msa0011100-mRNA-1:exon:6072;Parent=Msa0011100-mRNA-1
chr1_1 exon 16754860 16755105 16754860 ID=Msa0011100-mRNA-1:exon:6071;Parent=Msa0011100-mRNA-1
chr1_1 exon 16755130 16755266 16755130 ID=Msa0011100-mRNA-1:exon:6070;Parent=Msa0011100-mRNA-1
chr1_1 five_prime_UTR 16755130 16755266 16755130 ID=Msa0011100-mRNA-1:five_prime_utr;Parent=Msa0011100-mRNA-1
chr1_1 five_prime_UTR 16755088 16755105 16755088 ID=Msa0011100-mRNA-1:five_prime_utr;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16754860 16755087 16754860 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16751018 16752940 16751018 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16750631 16750752 16750631 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16750458 16750542 16750458 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16749721 16749945 16749721 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16749489 16749563 16749489 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16748422 16748523 16748422 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 CDS 16748003 16748206 16748003 ID=Msa0011100-mRNA-1:cds;Parent=Msa0011100-mRNA-1
chr1_1 three_prime_UTR 16747678 16748002 16747678 ID=Msa0011100-mRNA-1:three_prime_utr;Parent=Msa0011100-mRNA-1
Gene Sequence

>Msa0011100

ATGGTAGCATGTATCGACATGGCATTCTCCGTAGTTCATTCAACTTCTTCTTATCCATGTTTGTTCTCCAACTCTTCTCCATTCTTCGCCAACAATAGATTCCTGGGCTTGGGCTTGGGCTTTGAGTATCAAAGGAAAGGAAGAAGGATACTAAGGAGACATGTCAAGTTTGTTATCAGTGCACAGCTTTCCAAGTCATTTTCATTCACCTTCGGGCTTGACTCTCCGAATTTGAATTCCTTCCAATCCCATGATCTATCAAAATTGTCCTGGAGGGGACCAGTTCCGGGTGATATTGCTGAAGTCGAGGCATATTGTAGGATCTTTAGAAACTCCGAAAGGCTTCATTCTGCATTAATGGATGCATTATGCAATCCGTTGACTGGGGAATGTAGTGTCTCGTATGAGGTTTCATCAGATGAGAAACCTCAACTTGAAGATAAAATAGTTTCTGTTCTTGGATGCATGGTATCCCTTGTGAACAAAGGCAGGGACGATGTTCTTACTGGAAGGTCCTCAATTATGAACCCCTTTCTTGACGCAGAGATTAGCGAGATTGAAGATAAGCTCCCTCCACTTGCCGTTTTCAGAAGCGAGATGAAAAGGTGTTCCGAGAGTTTACATGTTGCCCTTCAGAATTATTTAATGCCTGATGATGATCGGAGCTTAAATGTATGGAGGAAACTTCAGAAACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTGGTGAGGGTTATCCCTGTCCTACACTATTTGCTAATTGGTGTCCTGTATATTTTTCTTCTTCTAAAGAAGACACGGAGTCTGAAGAATTAGAAACGGCTTTTTGGACTGGTGGTCAAGTAACAGAAGAAGGACTAACGTGGTTACTAGATAAAGGATATAAAACAATTATAGATATCAGAGCCGAGACTGTAAGAGACAATTTCTATCAAGCGGCCGTGAACGATGCTATTTCATCTGGCAAAATTAATTTAGTAAAAATCCCAGTTGAAGTTATGACTGCACCAACAATGGAACAGGTTGCGAGGTTTGCATCTTATGTTACAGATAGCAGCAAAAGGCCTATCTATCTTCATAGCAAGGAAGGAGTTTGGAGATCATCTGCTATGGTGTCTAGATGGAGGCAGTATATGACTCGCTCTTCGTCACAGAATGTTTCTAGTCCACCAATTACCCCCTTTAACATGTTATCACATTCTACAAATAGCTCGGCAAAACTGCAGCATTCTTCAGCGACTGCAGAAAGATCCTCCCTCGAAAAGGATATTACTTCTTTGCAAGACAATTTCGATGCAACACGCAGTTCTGTTGGAACATCCGACAGAAGTGTCTCTGAAAAGAAGTATGATGAGAAAACACAAGGTAATGCAGCCTTAAATGGAATTTCTCCTGATAAGGAAGGATCTTTTCCAAGTTTTTCCAGCAAGATTAACCCTTTAAAAGCTCAAGTTCCTCCTCCGGATATCTTTTCCAAAAAAGCGATGTCCACATTTTTGGGTAGCAGGAAGATCTCACCTCCCGATTATGTCAATTATCAAATCAAAAGGGCGAAATTCTTACCGCAATTTAAGGACATGGCTATTGGAAGACGTGAAGGAGATGTGGTTGTTTCCAATGGTACTATTGTGGGTCCTGATAGTTTAAATGGATCAGCTCATGTTGATCATCCATCTGGAGAGCCCGAAATTACGGTCGATGACAATCAAAAGTCTGTGAATGGGAATGCTTCTAGTTCTAGTAGGACAACAGTAAACGGATCAAGTCAAGGGGAATTACATTACATGGCTAATGCCGACGTCTCTGCCGTTGTGAATAATAATAATAATGTAACAACTAAATCTCCAAGGGTTGAAAATGGAACAGTCAAGGCTGGGTTAGCTTTACGCGATGAAGAGTTGGGATCCCTTGAAGGCGATATGTGTGCGTCGTCAACGGGAGTTGTAAGGGTGCAGTCAAGAAAGAAAGCCGAGATGTTCTTGGTTCGGACAGATGGATTTTCTTGTACTAGAGAAAAGGTCACGGAATCTTCTTTGGCTTTCACTCATCCTAGCACTCAGCAACAGATGCTTATGTGGAAGTCTACACCAAAGAATGTGCTGTTGTTAAAAAAGCTTGGGGACGAACTATTGGAAGAAGCAAAAATGGTTGCTAATTTCCTTCATCACCAAGAGAAAATGAATGTTATTGTGGAACCTGATGTGCATGATGTACTTGCCAGAATTCCAGGTTTTGGATTCGTGCAGACCTTCTATAGCCATGATACAAGTGATCTACACGAGAAAATAGATTTTGTGGCTTGCTTGGGGGGAGACGGTGTTATACTGCATGCGTCAAATCTATTCAGAGATGCTTTTGACGACTACAGGCAAGACTTAAGACAAGTCATTCACGGAAATACTTCACGAGATGGTGTCTACATTACTCTAAGGATGCGTCTCCGATGTGAAATTTTTCGTAAAGGTAAAGCAATTCCAGGGAAAGTATTTGATATCCTCAATGAGGTGGTTGTTGATCGGGGTTCTAATCCATACCTTTCAAAGATTGAATGCTATGAACATGATCACCTTATAACCAAAGTACAAGGTGATGGAGTCATTGTTGGAACTCCTACGGGAAGTACTGCATATTCTACGGCTGCTGGAGGTTCCATGGTCCATCCAAACGTTCCGTGCATATTGTTTACCCCTATCTGTCCACATTCACTGTCATTTAGACCTGTCATACTTCCAGATTCTGCTCGATTAGAATTAAAGATTCCAGAAGATGCTAGAAGTAACGCGTGGGTCTCGTTCGATGGAAAAAGAAGACAACAGCTCTCAAGAGGAGACTCAGTCCGGATACATATGAGTGAGCATCCCCTTCCAACTGTTAACAAGTTTGACCAAACAGGTGATTGGTTCCGCAGCTTGATTCGCTGCCTAAATTGGAACGAGAGGCTTGATCAAAAGGCTCTATAA
Protein sequence

>Msa0011100

MVACIDMAFSVVHSTSSYPCLFSNSSPFFANNRFLGLGLGFEYQRKGRRILRRHVKFVISAQLSKSFSFTFGLDSPNLNSFQSHDLSKLSWRGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVSSDEKPQLEDKIVSVLGCMVSLVNKGRDDVLTGRSSIMNPFLDAEISEIEDKLPPLAVFRSEMKRCSESLHVALQNYLMPDDDRSLNVWRKLQKLKNVCYDSGFPRGEGYPCPTLFANWCPVYFSSSKEDTESEELETAFWTGGQVTEEGLTWLLDKGYKTIIDIRAETVRDNFYQAAVNDAISSGKINLVKIPVEVMTAPTMEQVARFASYVTDSSKRPIYLHSKEGVWRSSAMVSRWRQYMTRSSSQNVSSPPITPFNMLSHSTNSSAKLQHSSATAERSSLEKDITSLQDNFDATRSSVGTSDRSVSEKKYDEKTQGNAALNGISPDKEGSFPSFSSKINPLKAQVPPPDIFSKKAMSTFLGSRKISPPDYVNYQIKRAKFLPQFKDMAIGRREGDVVVSNGTIVGPDSLNGSAHVDHPSGEPEITVDDNQKSVNGNASSSSRTTVNGSSQGELHYMANADVSAVVNNNNNVTTKSPRVENGTVKAGLALRDEELGSLEGDMCASSTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKNVLLLKKLGDELLEEAKMVANFLHHQEKMNVIVEPDVHDVLARIPGFGFVQTFYSHDTSDLHEKIDFVACLGGDGVILHASNLFRDAFDDYRQDLRQVIHGNTSRDGVYITLRMRLRCEIFRKGKAIPGKVFDILNEVVVDRGSNPYLSKIECYEHDHLITKVQGDGVIVGTPTGSTAYSTAAGGSMVHPNVPCILFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRIHMSEHPLPTVNKFDQTGDWFRSLIRCLNWNERLDQKAL*