AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 80 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACGCCTCCGTTACCTTT+TGG 0.196515 4_2:+15605127 Msa0591340:CDS
AAATTCGAGGTGGGAAAATA+TGG 0.219465 4_2:-15605034 None:intergenic
CTGTTCCCTGGGATTGGCTT+TGG 0.228349 4_2:-15605312 None:intergenic
TGTTCCCTGGGATTGGCTTT+GGG 0.270024 4_2:-15605311 None:intergenic
ACGCCTTTCGGCCTGATCTT+AGG 0.275595 4_2:+15606033 Msa0591340:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 4_2:-15605162 None:intergenic
GGCAAAGAAGGCCTCCTTCC+GGG 0.289862 4_2:-15605263 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299784 4_2:+15605006 Msa0591340:five_prime_UTR
TCGTCCACGGAGGGTGAGTC+AGG 0.342961 4_2:-15606057 None:intergenic
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 4_2:-15605098 None:intergenic
GCTTCACTGTTCCCTGGGAT+TGG 0.355814 4_2:-15605318 None:intergenic
AGGCAAAGAAGGCCTCCTTC+CGG 0.382980 4_2:-15605264 None:intergenic
AACGAAGTACCCGCGCGAGC+AGG 0.426901 4_2:-15606174 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.429299 4_2:+15605074 Msa0591340:CDS
GTGAGTCAGGGCCTAAGATC+AGG 0.453368 4_2:-15606044 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 4_2:-15605178 None:intergenic
AAAAGCCCAAAGCCAATCCC+AGG 0.461472 4_2:+15605306 Msa0591340:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 4_2:+15605183 Msa0591340:CDS
ATGAAGCTTCACTGTTCCCT+GGG 0.472889 4_2:-15605323 None:intergenic
AGGCGTAGTCGATGGACAAC+AGG 0.473069 4_2:-15606016 None:intergenic
TATGAAGCTTCACTGTTCCC+TGG 0.477188 4_2:-15605324 None:intergenic
TGTCCATCGACTACGCCTTT+CGG 0.477754 4_2:+15606021 Msa0591340:CDS
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 4_2:+15605090 Msa0591340:CDS
TCCAATGCCCCGAAAACCTA+AGG 0.481914 4_2:-15606095 None:intergenic
GCCTTCCACCTAAGCTGCGC+AGG 0.489457 4_2:+15605283 Msa0591340:CDS
CCTTCTGCCTTTGCACTCGA+GGG 0.495046 4_2:+15605075 Msa0591340:CDS
TTCGTCCAACCCTGCTCGCG+CGG 0.503688 4_2:+15606164 Msa0591340:CDS
TCCTGCGCAGCTTAGGTGGA+AGG 0.508478 4_2:-15605284 None:intergenic
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 4_2:-15605161 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 4_2:-15605075 None:intergenic
GCAAAGAAGGCCTCCTTCCG+GGG 0.515468 4_2:-15605262 None:intergenic
AACCTTGCGGAGGAACCCTT+AGG 0.515988 4_2:+15606079 Msa0591340:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 4_2:-15604997 None:intergenic
TGTGGAACCTCAATATCTAC+AGG 0.524236 4_2:+15604990 Msa0591340:five_prime_UTR
TCGTCCAACCCTGCTCGCGC+GGG 0.525250 4_2:+15606165 Msa0591340:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 4_2:-15605114 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 4_2:-15605113 None:intergenic
CCAGAGTGGTATCTCACTGA+TGG 0.527423 4_2:+15605230 Msa0591340:intron
AGTACCCGCGCGAGCAGGGT+TGG 0.535281 4_2:-15606169 None:intergenic
AATTCGAGGTGGGAAAATAT+GGG 0.535970 4_2:-15605033 None:intergenic
CCTTGGTCTGTACTGGCACA+AGG 0.538614 4_2:+15605190 Msa0591340:CDS
TTTCCCACCTCGAATTTGGA+TGG 0.544467 4_2:+15605040 Msa0591340:exon
CAAAGAAGGCCTCCTTCCGG+GGG 0.550054 4_2:-15605261 None:intergenic
GCTTAGGTGGAAGGCAAAGA+AGG 0.550243 4_2:-15605275 None:intergenic
AACCTAAGGGTTCCTCCGCA+AGG 0.559471 4_2:-15606081 None:intergenic
CGAGAAGCCATCCAAATTCG+AGG 0.561193 4_2:-15605047 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 4_2:+15605097 Msa0591340:CDS
ACGAAGTACCCGCGCGAGCA+GGG 0.565436 4_2:-15606173 None:intergenic
AGGCCGAAAGGCGTAGTCGA+TGG 0.572797 4_2:-15606024 None:intergenic
TCCTCCGCAAGGTTCGTCCA+CGG 0.575439 4_2:-15606070 None:intergenic
CCGCAAGGTTCGTCCACGGA+GGG 0.579950 4_2:-15606066 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 4_2:+15605173 Msa0591340:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 4_2:-15605123 None:intergenic
CGTCCACGGAGGGTGAGTCA+GGG 0.596173 4_2:-15606056 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 4_2:-15605105 None:intergenic
AAGAAGGCCTCCTTCCGGGG+GGG 0.600255 4_2:-15605259 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.602954 4_2:-15605074 None:intergenic
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 4_2:-15605142 None:intergenic
GGCTTGAGTAACGCAAACAT+TGG 0.611831 4_2:-15606124 None:intergenic
AAAGCCCAAAGCCAATCCCA+GGG 0.619579 4_2:+15605307 Msa0591340:CDS
AGACAGTTTCTATGGGGCGT+AGG 0.622986 4_2:-15605154 None:intergenic
GCGAGCAGGGTTGGACGAAG+CGG 0.626879 4_2:-15606160 None:intergenic
AAAGAAGGCCTCCTTCCGGG+GGG 0.627949 4_2:-15605260 None:intergenic
GGGCCTAAGATCAGGCCGAA+AGG 0.628716 4_2:-15606036 None:intergenic
CCAATGCCCCGAAAACCTAA+GGG 0.629622 4_2:-15606094 None:intergenic
AAGCCATCCAAATTCGAGGT+GGG 0.631674 4_2:-15605043 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 4_2:-15605136 None:intergenic
CCCTCCGTGGACGAACCTTG+CGG 0.633512 4_2:+15606066 Msa0591340:CDS
TCCGCAAGGTTCGTCCACGG+AGG 0.633907 4_2:-15606067 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 4_2:-15605190 None:intergenic
CGAAGCGGAAGCGAGAATGT+CGG 0.648690 4_2:-15606145 None:intergenic
AGATATTGAGGTTCCACAAG+CGG 0.653295 4_2:-15604985 None:intergenic
AGGCCCTGACTCACCCTCCG+TGG 0.655611 4_2:+15606053 Msa0591340:CDS
GAAGCCATCCAAATTCGAGG+TGG 0.667338 4_2:-15605044 None:intergenic
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 4_2:-15605082 None:intergenic
TCCGTGGACGAACCTTGCGG+AGG 0.674144 4_2:+15606069 Msa0591340:CDS
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 4_2:-15605133 None:intergenic
GTATCGGGAAGTACCGCTTG+TGG 0.687149 4_2:+15604972 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 4_2:-15605189 None:intergenic
TCAGGTAGACAGTTTCTATG+GGG 0.720720 4_2:-15605160 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TAATAAGCCTGTAGATATTG+AGG - chr4_2:15605000-15605019 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr4_2:15605000-15605019 None:intergenic 30.0%
CTACAGGCTTATTAGCTAAA+TGG + chr4_2:15605006-15605025 Msa0591340:five_prime_UTR 35.0%
AATTCGAGGTGGGAAAATAT+GGG - chr4_2:15605036-15605055 None:intergenic 35.0%
AAATTCGAGGTGGGAAAATA+TGG - chr4_2:15605037-15605056 None:intergenic 35.0%
! ATATTTTCCCACCTCGAATT+TGG + chr4_2:15605036-15605055 Msa0591340:five_prime_UTR 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr4_2:15605596-15605615 None:intergenic 35.0%
!!! TGTTTTTTCAGGGTAAGAAG+GGG - chr4_2:15605900-15605919 None:intergenic 35.0%
!!! CTGTTTTTTCAGGGTAAGAA+GGG - chr4_2:15605901-15605920 None:intergenic 35.0%
CTTCTTACCCTGAAAAAACA+GGG + chr4_2:15605900-15605919 Msa0591340:intron 35.0%
TTCTTACCCTGAAAAAACAG+GGG + chr4_2:15605901-15605920 Msa0591340:intron 35.0%
TTGAACCGATAACCATCTTT+CGG + chr4_2:15605937-15605956 Msa0591340:intron 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr4_2:15605006-15605025 Msa0591340:five_prime_UTR 35.0%
AATTCGAGGTGGGAAAATAT+GGG - chr4_2:15605036-15605055 None:intergenic 35.0%
AAATTCGAGGTGGGAAAATA+TGG - chr4_2:15605037-15605056 None:intergenic 35.0%
! ATATTTTCCCACCTCGAATT+TGG + chr4_2:15605036-15605055 Msa0591340:five_prime_UTR 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr4_2:15605596-15605615 None:intergenic 35.0%
!!! TGTTTTTTCAGGGTAAGAAG+GGG - chr4_2:15605900-15605919 None:intergenic 35.0%
!!! CTGTTTTTTCAGGGTAAGAA+GGG - chr4_2:15605901-15605920 None:intergenic 35.0%
CTTCTTACCCTGAAAAAACA+GGG + chr4_2:15605900-15605919 Msa0591340:intron 35.0%
TTCTTACCCTGAAAAAACAG+GGG + chr4_2:15605901-15605920 Msa0591340:intron 35.0%
TTGAACCGATAACCATCTTT+CGG + chr4_2:15605937-15605956 Msa0591340:intron 35.0%
AGATATTGAGGTTCCACAAG+CGG - chr4_2:15604988-15605007 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr4_2:15604990-15605009 Msa0591340:five_prime_UTR 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr4_2:15605163-15605182 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr4_2:15605164-15605183 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr4_2:15605165-15605184 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - chr4_2:15605377-15605396 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr4_2:15605466-15605485 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr4_2:15605466-15605485 Msa0591340:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG + chr4_2:15605482-15605501 Msa0591340:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr4_2:15605595-15605614 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr4_2:15605597-15605616 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr4_2:15605597-15605616 Msa0591340:intron 40.0%
GCGACTGTTTACCAAAAAAC+AGG - chr4_2:15605626-15605645 None:intergenic 40.0%
!!! TTTTTTGGTAAACAGTCGCC+CGG + chr4_2:15605627-15605646 Msa0591340:intron 40.0%
! ACAACTCTCTCTAAGGAACT+CGG - chr4_2:15605718-15605737 None:intergenic 40.0%
TGGTAGGTAGAGAATACCTA+GGG - chr4_2:15605748-15605767 None:intergenic 40.0%
! TACAGGTACCCTTTTGTTGA+AGG + chr4_2:15605785-15605804 Msa0591340:intron 40.0%
TCGAACGACCTTCAACAAAA+GGG - chr4_2:15605796-15605815 None:intergenic 40.0%
!!! CCTGTTTTTTCAGGGTAAGA+AGG - chr4_2:15605902-15605921 None:intergenic 40.0%
CCTTCTTACCCTGAAAAAAC+AGG + chr4_2:15605899-15605918 Msa0591340:intron 40.0%
!! GTTATCGGTTCAAGAACACA+AGG - chr4_2:15605930-15605949 None:intergenic 40.0%
GTTAGCCGAAAGATGGTTAT+CGG - chr4_2:15605945-15605964 None:intergenic 40.0%
ATTCCTATACTACCCCTTGT+TGG - chr4_2:15605991-15606010 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr4_2:15604988-15605007 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr4_2:15604990-15605009 Msa0591340:five_prime_UTR 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr4_2:15605163-15605182 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr4_2:15605164-15605183 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr4_2:15605165-15605184 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - chr4_2:15605377-15605396 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr4_2:15605466-15605485 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr4_2:15605466-15605485 Msa0591340:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG + chr4_2:15605482-15605501 Msa0591340:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr4_2:15605595-15605614 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr4_2:15605597-15605616 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr4_2:15605597-15605616 Msa0591340:intron 40.0%
GCGACTGTTTACCAAAAAAC+AGG - chr4_2:15605626-15605645 None:intergenic 40.0%
!!! TTTTTTGGTAAACAGTCGCC+CGG + chr4_2:15605627-15605646 Msa0591340:intron 40.0%
! ACAACTCTCTCTAAGGAACT+CGG - chr4_2:15605718-15605737 None:intergenic 40.0%
TGGTAGGTAGAGAATACCTA+GGG - chr4_2:15605748-15605767 None:intergenic 40.0%
! TACAGGTACCCTTTTGTTGA+AGG + chr4_2:15605785-15605804 Msa0591340:intron 40.0%
TCGAACGACCTTCAACAAAA+GGG - chr4_2:15605796-15605815 None:intergenic 40.0%
!!! CCTGTTTTTTCAGGGTAAGA+AGG - chr4_2:15605902-15605921 None:intergenic 40.0%
CCTTCTTACCCTGAAAAAAC+AGG + chr4_2:15605899-15605918 Msa0591340:intron 40.0%
!! GTTATCGGTTCAAGAACACA+AGG - chr4_2:15605930-15605949 None:intergenic 40.0%
GTTAGCCGAAAGATGGTTAT+CGG - chr4_2:15605945-15605964 None:intergenic 40.0%
ATTCCTATACTACCCCTTGT+TGG - chr4_2:15605991-15606010 None:intergenic 40.0%
TTTCCCACCTCGAATTTGGA+TGG + chr4_2:15605040-15605059 Msa0591340:exon 45.0%
AAGCCATCCAAATTCGAGGT+GGG - chr4_2:15605046-15605065 None:intergenic 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr4_2:15605216-15605235 Msa0591340:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr4_2:15605326-15605345 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr4_2:15605327-15605346 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr4_2:15605326-15605345 Msa0591340:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr4_2:15605327-15605346 Msa0591340:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr4_2:15605341-15605360 Msa0591340:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr4_2:15605465-15605484 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - chr4_2:15605485-15605504 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr4_2:15605540-15605559 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr4_2:15605551-15605570 Msa0591340:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr4_2:15605594-15605613 None:intergenic 45.0%
!!! CTTTGCGGAGACCTGTTTTT+TGG + chr4_2:15605612-15605631 Msa0591340:intron 45.0%
!! TTTTTGGTAAACAGTCGCCC+GGG + chr4_2:15605628-15605647 Msa0591340:intron 45.0%
CAAAATAGCCCCGTAACTTC+GGG - chr4_2:15605695-15605714 None:intergenic 45.0%
GCAAAATAGCCCCGTAACTT+CGG - chr4_2:15605696-15605715 None:intergenic 45.0%
GGTAGGTAGAGAATACCTAG+GGG - chr4_2:15605747-15605766 None:intergenic 45.0%
GTGGTAGGTAGAGAATACCT+AGG - chr4_2:15605749-15605768 None:intergenic 45.0%
CTCGAACGACCTTCAACAAA+AGG - chr4_2:15605797-15605816 None:intergenic 45.0%
GTAATTGATGCCATACTCCC+AGG - chr4_2:15605825-15605844 None:intergenic 45.0%
!!! AGGTGACCCCTGTTTTTTCA+GGG - chr4_2:15605910-15605929 None:intergenic 45.0%
!!! AAGGTGACCCCTGTTTTTTC+AGG - chr4_2:15605911-15605930 None:intergenic 45.0%
GGCTTGAGTAACGCAAACAT+TGG - chr4_2:15606127-15606146 None:intergenic 45.0%
TTTCCCACCTCGAATTTGGA+TGG + chr4_2:15605040-15605059 Msa0591340:exon 45.0%
AAGCCATCCAAATTCGAGGT+GGG - chr4_2:15605046-15605065 None:intergenic 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr4_2:15605216-15605235 Msa0591340:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr4_2:15605326-15605345 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr4_2:15605327-15605346 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr4_2:15605326-15605345 Msa0591340:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr4_2:15605327-15605346 Msa0591340:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr4_2:15605341-15605360 Msa0591340:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr4_2:15605465-15605484 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - chr4_2:15605485-15605504 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr4_2:15605540-15605559 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr4_2:15605551-15605570 Msa0591340:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr4_2:15605594-15605613 None:intergenic 45.0%
!!! CTTTGCGGAGACCTGTTTTT+TGG + chr4_2:15605612-15605631 Msa0591340:intron 45.0%
!! TTTTTGGTAAACAGTCGCCC+GGG + chr4_2:15605628-15605647 Msa0591340:intron 45.0%
CAAAATAGCCCCGTAACTTC+GGG - chr4_2:15605695-15605714 None:intergenic 45.0%
GCAAAATAGCCCCGTAACTT+CGG - chr4_2:15605696-15605715 None:intergenic 45.0%
GGTAGGTAGAGAATACCTAG+GGG - chr4_2:15605747-15605766 None:intergenic 45.0%
GTGGTAGGTAGAGAATACCT+AGG - chr4_2:15605749-15605768 None:intergenic 45.0%
CTCGAACGACCTTCAACAAA+AGG - chr4_2:15605797-15605816 None:intergenic 45.0%
GTAATTGATGCCATACTCCC+AGG - chr4_2:15605825-15605844 None:intergenic 45.0%
!!! AGGTGACCCCTGTTTTTTCA+GGG - chr4_2:15605910-15605929 None:intergenic 45.0%
!!! AAGGTGACCCCTGTTTTTTC+AGG - chr4_2:15605911-15605930 None:intergenic 45.0%
GGCTTGAGTAACGCAAACAT+TGG - chr4_2:15606127-15606146 None:intergenic 45.0%
GAAGCCATCCAAATTCGAGG+TGG - chr4_2:15605047-15605066 None:intergenic 50.0%
CGAGAAGCCATCCAAATTCG+AGG - chr4_2:15605050-15605069 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr4_2:15605139-15605158 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr4_2:15605157-15605176 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr4_2:15605192-15605211 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - chr4_2:15605233-15605252 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + chr4_2:15605230-15605249 Msa0591340:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr4_2:15605278-15605297 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr4_2:15605306-15605325 Msa0591340:CDS 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr4_2:15605307-15605326 Msa0591340:CDS 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr4_2:15605314-15605333 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - chr4_2:15605417-15605436 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - chr4_2:15605428-15605447 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr4_2:15605428-15605447 Msa0591340:intron 50.0%
AACGGCGGCCGTAACTATAA+CGG - chr4_2:15605493-15605512 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr4_2:15605541-15605560 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr4_2:15605556-15605575 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr4_2:15605558-15605577 Msa0591340:intron 50.0%
TCTCTACCTACCACCTGTGT+CGG + chr4_2:15605755-15605774 Msa0591340:intron 50.0%
! AAGGTCGTTCGAGCTTTTCC+TGG + chr4_2:15605804-15605823 Msa0591340:intron 50.0%
! AGGTCGTTCGAGCTTTTCCT+GGG + chr4_2:15605805-15605824 Msa0591340:intron 50.0%
! TCGAGCTTTTCCTGGGAGTA+TGG + chr4_2:15605812-15605831 Msa0591340:intron 50.0%
GGCATCAATTACTTCAGCGC+CGG + chr4_2:15605833-15605852 Msa0591340:intron 50.0%
AGAGAAAATGCCTCCAGCCA+AGG - chr4_2:15605876-15605895 None:intergenic 50.0%
! AGGCTAGGTTAGCCGAAAGA+TGG - chr4_2:15605952-15605971 None:intergenic 50.0%
GGACCAACAAGGGGTAGTAT+AGG + chr4_2:15605985-15606004 Msa0591340:intron 50.0%
! TGTCCATCGACTACGCCTTT+CGG + chr4_2:15606021-15606040 Msa0591340:CDS 50.0%
! CGGAGGAACCCTTAGGTTTT+CGG + chr4_2:15606086-15606105 Msa0591340:CDS 50.0%
! GGAGGAACCCTTAGGTTTTC+GGG + chr4_2:15606087-15606106 Msa0591340:CDS 50.0%
! GAGGAACCCTTAGGTTTTCG+GGG + chr4_2:15606088-15606107 Msa0591340:CDS 50.0%
CCAATGCCCCGAAAACCTAA+GGG - chr4_2:15606097-15606116 None:intergenic 50.0%
TCCAATGCCCCGAAAACCTA+AGG - chr4_2:15606098-15606117 None:intergenic 50.0%
GAAGCCATCCAAATTCGAGG+TGG - chr4_2:15605047-15605066 None:intergenic 50.0%
CGAGAAGCCATCCAAATTCG+AGG - chr4_2:15605050-15605069 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr4_2:15605139-15605158 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr4_2:15605157-15605176 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr4_2:15605192-15605211 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - chr4_2:15605233-15605252 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + chr4_2:15605230-15605249 Msa0591340:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr4_2:15605278-15605297 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr4_2:15605306-15605325 Msa0591340:CDS 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr4_2:15605307-15605326 Msa0591340:CDS 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr4_2:15605314-15605333 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - chr4_2:15605417-15605436 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - chr4_2:15605428-15605447 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr4_2:15605428-15605447 Msa0591340:intron 50.0%
AACGGCGGCCGTAACTATAA+CGG - chr4_2:15605493-15605512 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr4_2:15605541-15605560 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr4_2:15605556-15605575 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr4_2:15605558-15605577 Msa0591340:intron 50.0%
TCTCTACCTACCACCTGTGT+CGG + chr4_2:15605755-15605774 Msa0591340:intron 50.0%
! AAGGTCGTTCGAGCTTTTCC+TGG + chr4_2:15605804-15605823 Msa0591340:intron 50.0%
! AGGTCGTTCGAGCTTTTCCT+GGG + chr4_2:15605805-15605824 Msa0591340:intron 50.0%
! TCGAGCTTTTCCTGGGAGTA+TGG + chr4_2:15605812-15605831 Msa0591340:intron 50.0%
GGCATCAATTACTTCAGCGC+CGG + chr4_2:15605833-15605852 Msa0591340:intron 50.0%
AGAGAAAATGCCTCCAGCCA+AGG - chr4_2:15605876-15605895 None:intergenic 50.0%
! AGGCTAGGTTAGCCGAAAGA+TGG - chr4_2:15605952-15605971 None:intergenic 50.0%
GGACCAACAAGGGGTAGTAT+AGG + chr4_2:15605985-15606004 Msa0591340:intron 50.0%
! TGTCCATCGACTACGCCTTT+CGG + chr4_2:15606021-15606040 Msa0591340:CDS 50.0%
! CGGAGGAACCCTTAGGTTTT+CGG + chr4_2:15606086-15606105 Msa0591340:CDS 50.0%
! GGAGGAACCCTTAGGTTTTC+GGG + chr4_2:15606087-15606106 Msa0591340:CDS 50.0%
! GAGGAACCCTTAGGTTTTCG+GGG + chr4_2:15606088-15606107 Msa0591340:CDS 50.0%
CCAATGCCCCGAAAACCTAA+GGG - chr4_2:15606097-15606116 None:intergenic 50.0%
TCCAATGCCCCGAAAACCTA+AGG - chr4_2:15606098-15606117 None:intergenic 50.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr4_2:15605077-15605096 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr4_2:15605075-15605094 Msa0591340:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr4_2:15605085-15605104 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr4_2:15605108-15605127 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr4_2:15605116-15605135 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr4_2:15605117-15605136 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr4_2:15605126-15605145 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr4_2:15605127-15605146 Msa0591340:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr4_2:15605128-15605147 Msa0591340:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr4_2:15605173-15605192 Msa0591340:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr4_2:15605181-15605200 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr4_2:15605183-15605202 Msa0591340:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr4_2:15605193-15605212 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr4_2:15605190-15605209 Msa0591340:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr4_2:15605267-15605286 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr4_2:15605291-15605310 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr4_2:15605315-15605334 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr4_2:15605321-15605340 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - chr4_2:15605429-15605448 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr4_2:15605429-15605448 Msa0591340:intron 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr4_2:15605442-15605461 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr4_2:15605533-15605552 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr4_2:15605557-15605576 Msa0591340:intron 55.0%
!! AAGGGGTGCCTCCTCACAAA+GGG - chr4_2:15605670-15605689 None:intergenic 55.0%
CACCCCTTCTCCCGAAGTTA+CGG + chr4_2:15605682-15605701 Msa0591340:intron 55.0%
ACCCCTTCTCCCGAAGTTAC+GGG + chr4_2:15605683-15605702 Msa0591340:intron 55.0%
GCGCGAGACAACTCTCTCTA+AGG - chr4_2:15605725-15605744 None:intergenic 55.0%
!! CCTACCACCTGTGTCGGTTT+CGG + chr4_2:15605761-15605780 Msa0591340:intron 55.0%
!! CTACCACCTGTGTCGGTTTC+GGG + chr4_2:15605762-15605781 Msa0591340:intron 55.0%
AGGCGTAGTCGATGGACAAC+AGG - chr4_2:15606019-15606038 None:intergenic 55.0%
ACGCCTTTCGGCCTGATCTT+AGG + chr4_2:15606033-15606052 Msa0591340:CDS 55.0%
GTGAGTCAGGGCCTAAGATC+AGG - chr4_2:15606047-15606066 None:intergenic 55.0%
AACCTTGCGGAGGAACCCTT+AGG + chr4_2:15606079-15606098 Msa0591340:CDS 55.0%
AACCTAAGGGTTCCTCCGCA+AGG - chr4_2:15606084-15606103 None:intergenic 55.0%
!! CCCTTAGGTTTTCGGGGCAT+TGG + chr4_2:15606094-15606113 Msa0591340:CDS 55.0%
CGAAGCGGAAGCGAGAATGT+CGG - chr4_2:15606148-15606167 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr4_2:15605077-15605096 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr4_2:15605075-15605094 Msa0591340:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr4_2:15605085-15605104 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr4_2:15605108-15605127 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr4_2:15605116-15605135 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr4_2:15605117-15605136 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr4_2:15605126-15605145 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr4_2:15605127-15605146 Msa0591340:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr4_2:15605128-15605147 Msa0591340:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr4_2:15605173-15605192 Msa0591340:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr4_2:15605181-15605200 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr4_2:15605183-15605202 Msa0591340:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr4_2:15605193-15605212 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr4_2:15605190-15605209 Msa0591340:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr4_2:15605267-15605286 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr4_2:15605291-15605310 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr4_2:15605315-15605334 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr4_2:15605321-15605340 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - chr4_2:15605429-15605448 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr4_2:15605429-15605448 Msa0591340:intron 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr4_2:15605442-15605461 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr4_2:15605533-15605552 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr4_2:15605557-15605576 Msa0591340:intron 55.0%
!! AAGGGGTGCCTCCTCACAAA+GGG - chr4_2:15605670-15605689 None:intergenic 55.0%
CACCCCTTCTCCCGAAGTTA+CGG + chr4_2:15605682-15605701 Msa0591340:intron 55.0%
ACCCCTTCTCCCGAAGTTAC+GGG + chr4_2:15605683-15605702 Msa0591340:intron 55.0%
GCGCGAGACAACTCTCTCTA+AGG - chr4_2:15605725-15605744 None:intergenic 55.0%
!! CCTACCACCTGTGTCGGTTT+CGG + chr4_2:15605761-15605780 Msa0591340:intron 55.0%
!! CTACCACCTGTGTCGGTTTC+GGG + chr4_2:15605762-15605781 Msa0591340:intron 55.0%
AGGCGTAGTCGATGGACAAC+AGG - chr4_2:15606019-15606038 None:intergenic 55.0%
ACGCCTTTCGGCCTGATCTT+AGG + chr4_2:15606033-15606052 Msa0591340:CDS 55.0%
GTGAGTCAGGGCCTAAGATC+AGG - chr4_2:15606047-15606066 None:intergenic 55.0%
AACCTTGCGGAGGAACCCTT+AGG + chr4_2:15606079-15606098 Msa0591340:CDS 55.0%
AACCTAAGGGTTCCTCCGCA+AGG - chr4_2:15606084-15606103 None:intergenic 55.0%
!! CCCTTAGGTTTTCGGGGCAT+TGG + chr4_2:15606094-15606113 Msa0591340:CDS 55.0%
CGAAGCGGAAGCGAGAATGT+CGG - chr4_2:15606148-15606167 None:intergenic 55.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr4_2:15605074-15605093 Msa0591340:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr4_2:15605078-15605097 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr4_2:15605131-15605150 Msa0591340:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr4_2:15605136-15605155 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr4_2:15605263-15605282 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr4_2:15605264-15605283 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr4_2:15605265-15605284 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr4_2:15605266-15605285 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr4_2:15605287-15605306 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr4_2:15605294-15605313 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr4_2:15605347-15605366 Msa0591340:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr4_2:15605362-15605381 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr4_2:15605405-15605424 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr4_2:15605433-15605452 Msa0591340:intron 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr4_2:15605449-15605468 Msa0591340:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr4_2:15605496-15605515 Msa0591340:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr4_2:15605563-15605582 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr4_2:15605562-15605581 Msa0591340:intron 60.0%
TCACTGCGACCCCCTTTGTG+AGG + chr4_2:15605656-15605675 Msa0591340:intron 60.0%
!! AGGGGTGCCTCCTCACAAAG+GGG - chr4_2:15605669-15605688 None:intergenic 60.0%
!! GAAGGGGTGCCTCCTCACAA+AGG - chr4_2:15605671-15605690 None:intergenic 60.0%
CCCCGTAACTTCGGGAGAAG+GGG - chr4_2:15605687-15605706 None:intergenic 60.0%
CCCCTTCTCCCGAAGTTACG+GGG + chr4_2:15605684-15605703 Msa0591340:intron 60.0%
GCCCCGTAACTTCGGGAGAA+GGG - chr4_2:15605688-15605707 None:intergenic 60.0%
AGCCCCGTAACTTCGGGAGA+AGG - chr4_2:15605689-15605708 None:intergenic 60.0%
CCGAAACCGACACAGGTGGT+AGG - chr4_2:15605764-15605783 None:intergenic 60.0%
GTACCCGAAACCGACACAGG+TGG - chr4_2:15605768-15605787 None:intergenic 60.0%
CCTGTACCCGAAACCGACAC+AGG - chr4_2:15605771-15605790 None:intergenic 60.0%
!! CCTGTGTCGGTTTCGGGTAC+AGG + chr4_2:15605768-15605787 Msa0591340:intron 60.0%
AGCGCCTGGTACTCGAACCT+TGG + chr4_2:15605856-15605875 Msa0591340:intron 60.0%
CCAGCCAAGGTTCGAGTACC+AGG - chr4_2:15605863-15605882 None:intergenic 60.0%
CCTGGTACTCGAACCTTGGC+TGG + chr4_2:15605860-15605879 Msa0591340:intron 60.0%
GGTACTCGAACCTTGGCTGG+AGG + chr4_2:15605863-15605882 Msa0591340:intron 60.0%
CTACCCCTTGTTGGTCCCGA+GGG - chr4_2:15605982-15606001 None:intergenic 60.0%
ACTACCCCTTGTTGGTCCCG+AGG - chr4_2:15605983-15606002 None:intergenic 60.0%
! AGGCCGAAAGGCGTAGTCGA+TGG - chr4_2:15606027-15606046 None:intergenic 60.0%
GGGCCTAAGATCAGGCCGAA+AGG - chr4_2:15606039-15606058 None:intergenic 60.0%
TCCTCCGCAAGGTTCGTCCA+CGG - chr4_2:15606073-15606092 None:intergenic 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr4_2:15605074-15605093 Msa0591340:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr4_2:15605078-15605097 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr4_2:15605131-15605150 Msa0591340:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr4_2:15605136-15605155 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr4_2:15605263-15605282 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr4_2:15605264-15605283 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr4_2:15605265-15605284 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr4_2:15605266-15605285 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr4_2:15605287-15605306 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr4_2:15605294-15605313 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr4_2:15605347-15605366 Msa0591340:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr4_2:15605362-15605381 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr4_2:15605405-15605424 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr4_2:15605433-15605452 Msa0591340:intron 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr4_2:15605449-15605468 Msa0591340:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr4_2:15605496-15605515 Msa0591340:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr4_2:15605563-15605582 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr4_2:15605562-15605581 Msa0591340:intron 60.0%
TCACTGCGACCCCCTTTGTG+AGG + chr4_2:15605656-15605675 Msa0591340:intron 60.0%
!! AGGGGTGCCTCCTCACAAAG+GGG - chr4_2:15605669-15605688 None:intergenic 60.0%
!! GAAGGGGTGCCTCCTCACAA+AGG - chr4_2:15605671-15605690 None:intergenic 60.0%
CCCCGTAACTTCGGGAGAAG+GGG - chr4_2:15605687-15605706 None:intergenic 60.0%
CCCCTTCTCCCGAAGTTACG+GGG + chr4_2:15605684-15605703 Msa0591340:intron 60.0%
GCCCCGTAACTTCGGGAGAA+GGG - chr4_2:15605688-15605707 None:intergenic 60.0%
AGCCCCGTAACTTCGGGAGA+AGG - chr4_2:15605689-15605708 None:intergenic 60.0%
CCGAAACCGACACAGGTGGT+AGG - chr4_2:15605764-15605783 None:intergenic 60.0%
GTACCCGAAACCGACACAGG+TGG - chr4_2:15605768-15605787 None:intergenic 60.0%
CCTGTACCCGAAACCGACAC+AGG - chr4_2:15605771-15605790 None:intergenic 60.0%
!! CCTGTGTCGGTTTCGGGTAC+AGG + chr4_2:15605768-15605787 Msa0591340:intron 60.0%
AGCGCCTGGTACTCGAACCT+TGG + chr4_2:15605856-15605875 Msa0591340:intron 60.0%
CCAGCCAAGGTTCGAGTACC+AGG - chr4_2:15605863-15605882 None:intergenic 60.0%
CCTGGTACTCGAACCTTGGC+TGG + chr4_2:15605860-15605879 Msa0591340:intron 60.0%
GGTACTCGAACCTTGGCTGG+AGG + chr4_2:15605863-15605882 Msa0591340:intron 60.0%
CTACCCCTTGTTGGTCCCGA+GGG - chr4_2:15605982-15606001 None:intergenic 60.0%
ACTACCCCTTGTTGGTCCCG+AGG - chr4_2:15605983-15606002 None:intergenic 60.0%
! AGGCCGAAAGGCGTAGTCGA+TGG - chr4_2:15606027-15606046 None:intergenic 60.0%
GGGCCTAAGATCAGGCCGAA+AGG - chr4_2:15606039-15606058 None:intergenic 60.0%
TCCTCCGCAAGGTTCGTCCA+CGG - chr4_2:15606073-15606092 None:intergenic 60.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr4_2:15605090-15605109 Msa0591340:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr4_2:15605101-15605120 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr4_2:15605145-15605164 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr4_2:15605262-15605281 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr4_2:15605283-15605302 Msa0591340:CDS 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - chr4_2:15605410-15605429 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr4_2:15605497-15605516 Msa0591340:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr4_2:15605527-15605546 Msa0591340:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr4_2:15605581-15605600 Msa0591340:intron 65.0%
CAAAGGGGGTCGCAGTGACC+AGG - chr4_2:15605654-15605673 None:intergenic 65.0%
CTGCGACCCCCTTTGTGAGG+AGG + chr4_2:15605659-15605678 Msa0591340:intron 65.0%
! GGGGTGCCTCCTCACAAAGG+GGG - chr4_2:15605668-15605687 None:intergenic 65.0%
GAGAGTTGTCTCGCGCCCCT+AGG + chr4_2:15605729-15605748 Msa0591340:intron 65.0%
GGTTCGAGTACCAGGCGCTC+CGG - chr4_2:15605855-15605874 None:intergenic 65.0%
ACCTAGCCTCCTCCGTCCCT+CGG + chr4_2:15605963-15605982 Msa0591340:intron 65.0%
TTGTTGGTCCCGAGGGACGG+AGG - chr4_2:15605975-15605994 None:intergenic 65.0%
TCCGTCCCTCGGGACCAACA+AGG + chr4_2:15605974-15605993 Msa0591340:intron 65.0%
CCCTTGTTGGTCCCGAGGGA+CGG - chr4_2:15605978-15605997 None:intergenic 65.0%
CCGTCCCTCGGGACCAACAA+GGG + chr4_2:15605975-15605994 Msa0591340:intron 65.0%
CGTCCCTCGGGACCAACAAG+GGG + chr4_2:15605976-15605995 Msa0591340:intron 65.0%
CGTCCACGGAGGGTGAGTCA+GGG - chr4_2:15606059-15606078 None:intergenic 65.0%
TCGTCCACGGAGGGTGAGTC+AGG - chr4_2:15606060-15606079 None:intergenic 65.0%
CCGCAAGGTTCGTCCACGGA+GGG - chr4_2:15606069-15606088 None:intergenic 65.0%
CCCTCCGTGGACGAACCTTG+CGG + chr4_2:15606066-15606085 Msa0591340:CDS 65.0%
TCCGCAAGGTTCGTCCACGG+AGG - chr4_2:15606070-15606089 None:intergenic 65.0%
TCCGTGGACGAACCTTGCGG+AGG + chr4_2:15606069-15606088 Msa0591340:CDS 65.0%
GCGAGCAGGGTTGGACGAAG+CGG - chr4_2:15606163-15606182 None:intergenic 65.0%
TTCGTCCAACCCTGCTCGCG+CGG + chr4_2:15606164-15606183 Msa0591340:CDS 65.0%
! ACGAAGTACCCGCGCGAGCA+GGG - chr4_2:15606176-15606195 None:intergenic 65.0%
! AACGAAGTACCCGCGCGAGC+AGG - chr4_2:15606177-15606196 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr4_2:15605090-15605109 Msa0591340:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr4_2:15605101-15605120 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr4_2:15605145-15605164 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr4_2:15605262-15605281 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr4_2:15605283-15605302 Msa0591340:CDS 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - chr4_2:15605410-15605429 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr4_2:15605497-15605516 Msa0591340:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr4_2:15605527-15605546 Msa0591340:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr4_2:15605581-15605600 Msa0591340:intron 65.0%
CAAAGGGGGTCGCAGTGACC+AGG - chr4_2:15605654-15605673 None:intergenic 65.0%
CTGCGACCCCCTTTGTGAGG+AGG + chr4_2:15605659-15605678 Msa0591340:intron 65.0%
! GGGGTGCCTCCTCACAAAGG+GGG - chr4_2:15605668-15605687 None:intergenic 65.0%
GAGAGTTGTCTCGCGCCCCT+AGG + chr4_2:15605729-15605748 Msa0591340:intron 65.0%
GGTTCGAGTACCAGGCGCTC+CGG - chr4_2:15605855-15605874 None:intergenic 65.0%
ACCTAGCCTCCTCCGTCCCT+CGG + chr4_2:15605963-15605982 Msa0591340:intron 65.0%
TTGTTGGTCCCGAGGGACGG+AGG - chr4_2:15605975-15605994 None:intergenic 65.0%
TCCGTCCCTCGGGACCAACA+AGG + chr4_2:15605974-15605993 Msa0591340:intron 65.0%
CCCTTGTTGGTCCCGAGGGA+CGG - chr4_2:15605978-15605997 None:intergenic 65.0%
CCGTCCCTCGGGACCAACAA+GGG + chr4_2:15605975-15605994 Msa0591340:intron 65.0%
CGTCCCTCGGGACCAACAAG+GGG + chr4_2:15605976-15605995 Msa0591340:intron 65.0%
CGTCCACGGAGGGTGAGTCA+GGG - chr4_2:15606059-15606078 None:intergenic 65.0%
TCGTCCACGGAGGGTGAGTC+AGG - chr4_2:15606060-15606079 None:intergenic 65.0%
CCGCAAGGTTCGTCCACGGA+GGG - chr4_2:15606069-15606088 None:intergenic 65.0%
CCCTCCGTGGACGAACCTTG+CGG + chr4_2:15606066-15606085 Msa0591340:CDS 65.0%
TCCGCAAGGTTCGTCCACGG+AGG - chr4_2:15606070-15606089 None:intergenic 65.0%
TCCGTGGACGAACCTTGCGG+AGG + chr4_2:15606069-15606088 Msa0591340:CDS 65.0%
GCGAGCAGGGTTGGACGAAG+CGG - chr4_2:15606163-15606182 None:intergenic 65.0%
TTCGTCCAACCCTGCTCGCG+CGG + chr4_2:15606164-15606183 Msa0591340:CDS 65.0%
! ACGAAGTACCCGCGCGAGCA+GGG - chr4_2:15606176-15606195 None:intergenic 65.0%
! AACGAAGTACCCGCGCGAGC+AGG - chr4_2:15606177-15606196 None:intergenic 65.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr4_2:15605097-15605116 Msa0591340:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + chr4_2:15605245-15605264 Msa0591340:CDS 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr4_2:15605498-15605517 Msa0591340:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr4_2:15605508-15605527 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr4_2:15605511-15605530 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr4_2:15605511-15605530 Msa0591340:intron 70.0%
GGTAAACAGTCGCCCGGGCC+TGG + chr4_2:15605633-15605652 Msa0591340:intron 70.0%
! TACTTCAGCGCCGGAGCGCC+TGG + chr4_2:15605842-15605861 Msa0591340:intron 70.0%
CCTAGCCTCCTCCGTCCCTC+GGG + chr4_2:15605964-15605983 Msa0591340:intron 70.0%
TTGGTCCCGAGGGACGGAGG+AGG - chr4_2:15605972-15605991 None:intergenic 70.0%
AGGCCCTGACTCACCCTCCG+TGG + chr4_2:15606053-15606072 Msa0591340:CDS 70.0%
TCGTCCAACCCTGCTCGCGC+GGG + chr4_2:15606165-15606184 Msa0591340:CDS 70.0%
AGTACCCGCGCGAGCAGGGT+TGG - chr4_2:15606172-15606191 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr4_2:15605097-15605116 Msa0591340:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + chr4_2:15605245-15605264 Msa0591340:CDS 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr4_2:15605498-15605517 Msa0591340:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr4_2:15605508-15605527 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr4_2:15605511-15605530 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr4_2:15605511-15605530 Msa0591340:intron 70.0%
GGTAAACAGTCGCCCGGGCC+TGG + chr4_2:15605633-15605652 Msa0591340:intron 70.0%
! TACTTCAGCGCCGGAGCGCC+TGG + chr4_2:15605842-15605861 Msa0591340:intron 70.0%
CCTAGCCTCCTCCGTCCCTC+GGG + chr4_2:15605964-15605983 Msa0591340:intron 70.0%
TTGGTCCCGAGGGACGGAGG+AGG - chr4_2:15605972-15605991 None:intergenic 70.0%
AGGCCCTGACTCACCCTCCG+TGG + chr4_2:15606053-15606072 Msa0591340:CDS 70.0%
TCGTCCAACCCTGCTCGCGC+GGG + chr4_2:15606165-15606184 Msa0591340:CDS 70.0%
AGTACCCGCGCGAGCAGGGT+TGG - chr4_2:15606172-15606191 None:intergenic 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + chr4_2:15605249-15605268 Msa0591340:CDS 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr4_2:15605504-15605523 Msa0591340:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr4_2:15605518-15605537 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr4_2:15605569-15605588 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr4_2:15605573-15605592 None:intergenic 75.0%
GGGTCGCAGTGACCAGGCCC+GGG - chr4_2:15605648-15605667 None:intergenic 75.0%
GGGGTCGCAGTGACCAGGCC+CGG - chr4_2:15605649-15605668 None:intergenic 75.0%
CCCGAGGGACGGAGGAGGCT+AGG - chr4_2:15605967-15605986 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + chr4_2:15605249-15605268 Msa0591340:CDS 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr4_2:15605504-15605523 Msa0591340:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr4_2:15605518-15605537 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr4_2:15605569-15605588 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr4_2:15605573-15605592 None:intergenic 75.0%
GGGTCGCAGTGACCAGGCCC+GGG - chr4_2:15605648-15605667 None:intergenic 75.0%
GGGGTCGCAGTGACCAGGCC+CGG - chr4_2:15605649-15605668 None:intergenic 75.0%
CCCGAGGGACGGAGGAGGCT+AGG - chr4_2:15605967-15605986 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + chr4_2:15605252-15605271 Msa0591340:CDS 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + chr4_2:15605252-15605271 Msa0591340:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 15604973 15606197 15604973 ID=Msa0591340;Name=Msa0591340
chr4_2 mRNA 15604973 15606197 15604973 ID=Msa0591340-mRNA-1;Parent=Msa0591340;Name=Msa0591340-mRNA-1;_AED=0.29;_eAED=0.45;_QI=86|0|0|1|0|0|3|0|148
chr4_2 exon 15604973 15605211 15604973 ID=Msa0591340-mRNA-1:exon:4530;Parent=Msa0591340-mRNA-1
chr4_2 exon 15605234 15605333 15605234 ID=Msa0591340-mRNA-1:exon:4531;Parent=Msa0591340-mRNA-1
chr4_2 exon 15606007 15606197 15606007 ID=Msa0591340-mRNA-1:exon:4532;Parent=Msa0591340-mRNA-1
chr4_2 five_prime_UTR 15604973 15605058 15604973 ID=Msa0591340-mRNA-1:five_prime_utr;Parent=Msa0591340-mRNA-1
chr4_2 CDS 15605059 15605211 15605059 ID=Msa0591340-mRNA-1:cds;Parent=Msa0591340-mRNA-1
chr4_2 CDS 15605234 15605333 15605234 ID=Msa0591340-mRNA-1:cds;Parent=Msa0591340-mRNA-1
chr4_2 CDS 15606007 15606197 15606007 ID=Msa0591340-mRNA-1:cds;Parent=Msa0591340-mRNA-1
Gene Sequence

>Msa0591340

ATGGCTTCTCGAACTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGAGTGGTATCTCACTGATGGCTCGAGCCCCCCCGGAAGGAGGCCTTCTTTGCCTTCCACCTAAGCTGCGCAGGAAAAGCCCAAAGCCAATCCCAGGGAACAGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCAACCCTGCTCGCGCGGGTACTTCGTTC

Protein sequence

>Msa0591340

MASRTPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKSGISLMARAPPEGGLLCLPPKLRRKSPKPIPGNRIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSNPARAGTSF