AlfalfaGEDB | Msa0869420

M. sativa cultivar zhongmu-4 / Msa0869420

KEGG: K01673
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122
PFAM: PF00484.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869420	XP_003618281.2	98.489	331	3	2	1	329	1	331	0.0	657

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869420	sp\|P17067\|CAHC_PEA	93.921	329	19	1	1	329	1	328	0.0	605

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869420	G7KIQ9	98.489	331	3	2	1	329	1	331	0.0	656

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0869420	0.821585	3.734380e-53	-8.615850e-47
Msa0000800	Msa0869420	-0.815762	7.828963e-52	-8.615850e-47
Msa0001040	Msa0869420	0.825410	4.760228e-54	-8.615850e-47
Msa0001510	Msa0869420	0.878895	1.939461e-69	-8.615850e-47
Msa0001550	Msa0869420	0.890020	1.436325e-73	-8.615850e-47
Msa0002110	Msa0869420	0.937334	4.104165e-98	-8.615850e-47
Msa0002690	Msa0869420	0.951705	1.160111e-109	-8.615850e-47
Msa0002700	Msa0869420	0.946902	1.895769e-105	-8.615850e-47
Msa0003340	Msa0869420	0.860275	2.313235e-63	-8.615850e-47
Msa0004180	Msa0869420	0.943912	5.098580e-103	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869420	MtrunA17_Chr6g0450641	98.489	331	3	2	1	329	1	331	0.0	656
Msa0869420	MtrunA17_Chr5g0413551	63.566	258	90	1	72	329	3	256	4.42e-122	351
Msa0869420	MtrunA17_Chr8g0365441	64.981	257	85	3	72	328	3	254	1.02e-119	345
Msa0869420	MtrunA17_Chr3g0117661	56.667	240	101	1	78	317	9	245	4.51e-96	285
Msa0869420	MtrunA17_Chr3g0117691	56.250	240	102	1	78	317	9	245	1.02e-94	281
Msa0869420	MtrunA17_Chr2g0279581	51.777	197	92	2	125	321	89	282	4.07e-68	215
Msa0869420	MtrunA17_Chr5g0427341	46.701	197	103	2	125	321	94	288	1.99e-58	190
Msa0869420	MtrunA17_Chr3g0117671	68.182	44	14	0	156	199	1	44	1.13e-16	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869420	AT3G01500.3	68.047	338	97	4	1	329	1	336	5.12e-150	425
Msa0869420	AT3G01500.2	68.047	338	97	4	1	329	1	336	6.83e-150	425
Msa0869420	AT3G01500.4	74.615	260	64	2	71	329	1	259	2.18e-139	395
Msa0869420	AT3G01500.1	74.615	260	64	2	71	329	1	259	4.28e-139	395
Msa0869420	AT5G14740.9	70.000	260	76	2	71	329	1	259	7.00e-132	376
Msa0869420	AT5G14740.8	70.000	260	76	2	71	329	1	259	7.00e-132	376
Msa0869420	AT5G14740.7	70.000	260	76	2	71	329	1	259	7.00e-132	376
Msa0869420	AT5G14740.2	70.000	260	76	2	71	329	1	259	7.00e-132	376
Msa0869420	AT5G14740.6	70.000	260	76	2	71	329	1	259	7.00e-132	376
Msa0869420	AT5G14740.1	69.202	263	80	1	67	329	70	331	8.78e-132	379

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Find 112 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGGCACTAAAAGG+AGG	0.653225	6_1:-3554709	Msa0869420:CDS
AAACATGGAGATGCACCTTT+TGG	0.343398	6_1:-3555334	Msa0869420:CDS
AAAGGTAAATGACAAGAACA+AGG	0.700282	6_1:-3559146	Msa0869420:five_prime_UTR
AACAAAACATTGGCACTAAA+AGG	0.320612	6_1:-3554712	Msa0869420:CDS
AAGAGAAGGGAAGTTAGAAG+TGG	0.550503	6_1:+3558790	None:intergenic
AAGAGAGAAGAAATGGGAAA+GGG	0.478534	6_1:-3557592	Msa0869420:CDS
AAGATGTGGTCATTGATATA+TGG	0.428062	6_1:+3554603	None:intergenic
AATGGGAAAGGGCTATGATG+AGG	0.670505	6_1:-3557581	Msa0869420:CDS
ACAAGAACAAGGCAATCCAA+AGG	0.634465	6_1:-3559135	Msa0869420:five_prime_UTR
ACCAAAACTGGGGTGATGAT+AGG	0.472900	6_1:+3558731	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAAATGACAAGAACA+AGG	-	chr6_1:3554045-3554064	Msa0869420:three_prime_UTR	30.0%
TTTAGATGAGGTTTGAATGT+TGG	+	chr6_1:3554119-3554138	None:intergenic	30.0%
CAAACCTCATCTAAAAAGAT+AGG	-	chr6_1:3554124-3554143	Msa0869420:three_prime_UTR	30.0%
TGAAAACGAAAGTTAAGCTA+AGG	+	chr6_1:3554161-3554180	None:intergenic	30.0%
CCTTTGGTTACATTAAAATG+GGG	-	chr6_1:3554188-3554207	Msa0869420:three_prime_UTR	30.0%
TTAAGAGATGCAGAAACAAT+AGG	+	chr6_1:3554364-3554383	None:intergenic	30.0%
TAGTGTATATACCAAAACTG+GGG	+	chr6_1:3554473-3554492	None:intergenic	30.0%
ACACTAAAACTAATGCACTT+TGG	-	chr6_1:3554487-3554506	Msa0869420:intron	30.0%
TGTTTGATTCTTCGATAAAG+TGG	-	chr6_1:3554684-3554703	Msa0869420:CDS	30.0%
GTTTGATTCTTCGATAAAGT+GGG	-	chr6_1:3554685-3554704	Msa0869420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	3554001	3559212	3554001	ID=Msa0869420;Name=Msa0869420
chr6_1	mRNA	3554001	3559212	3554001	ID=Msa0869420-mRNA-1;Parent=Msa0869420;Name=Msa0869420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=279\|1\|1\|1\|0.88\|0.8\|10\|420\|329
chr6_1	exon	3554001	3554361	3554001	ID=Msa0869420-mRNA-1:exon:1086;Parent=Msa0869420-mRNA-1
chr6_1	exon	3554574	3554797	3554574	ID=Msa0869420-mRNA-1:exon:1085;Parent=Msa0869420-mRNA-1
chr6_1	exon	3555309	3555414	3555309	ID=Msa0869420-mRNA-1:exon:1084;Parent=Msa0869420-mRNA-1
chr6_1	exon	3555845	3555930	3555845	ID=Msa0869420-mRNA-1:exon:1083;Parent=Msa0869420-mRNA-1
chr6_1	exon	3556173	3556226	3556173	ID=Msa0869420-mRNA-1:exon:1082;Parent=Msa0869420-mRNA-1
chr6_1	exon	3556493	3556609	3556493	ID=Msa0869420-mRNA-1:exon:1081;Parent=Msa0869420-mRNA-1
chr6_1	exon	3556981	3557029	3556981	ID=Msa0869420-mRNA-1:exon:1080;Parent=Msa0869420-mRNA-1
chr6_1	exon	3557132	3557284	3557132	ID=Msa0869420-mRNA-1:exon:1079;Parent=Msa0869420-mRNA-1
chr6_1	exon	3557553	3557611	3557553	ID=Msa0869420-mRNA-1:exon:1078;Parent=Msa0869420-mRNA-1
chr6_1	exon	3558733	3559212	3558733	ID=Msa0869420-mRNA-1:exon:1077;Parent=Msa0869420-mRNA-1
chr6_1	five_prime_UTR	3558934	3559212	3558934	ID=Msa0869420-mRNA-1:five_prime_utr;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3558733	3558933	3558733	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3557553	3557611	3557553	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3557132	3557284	3557132	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3556981	3557029	3556981	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3556493	3556609	3556493	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3556173	3556226	3556173	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3555845	3555930	3555845	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3555309	3555414	3555309	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	CDS	3554633	3554797	3554633	ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1	three_prime_UTR	3554574	3554632	3554574	ID=Msa0869420-mRNA-1:three_prime_utr;Parent=Msa0869420-mRNA-1
chr6_1	three_prime_UTR	3554001	3554361	3554001	ID=Msa0869420-mRNA-1:three_prime_utr;Parent=Msa0869420-mRNA-1

Gene Sequence

>Msa0869420

ATGTCTACCTCTTCCATAAACGGCTTTAGTCTCTCTTCTTTGTCCCCTACCAAAACTTCTATTAAAAAAGTTACATTGAGACCTATTGTTTCTGCATCTCTTAACTCTTCTTCTTCCTCTTCCACTTCTAACTTCCCTTCTCTTATTCAAGACAAGCCTGTTTTTGCTTCCTCTTCTTCTCCTATCATCACCCCAGTTTTGAGAGAAGAAATGGGAAAGGGCTATGATGAGGCTATTGAAGAGCTCCAAAAATTGTTGAGGGAGAAGACTGAATTGAAGGCCACAGCAGCTGAAAAAGTTGAGCAAATTACAGCTCAGCTAGGAACAACAGCATCAGCTGATGGTGTTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCCTTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTAGCCAAAGGCCAAGCCCCCCCGTTTATGGTCTTTGCATGCTCAGACTCTAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGTGAAGCTTTTGTGGTCAGAAATGTTGCTAACATGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGATCTGCCATTGAGTATGCTGTTCTTCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTTCCATTTGATGGAGCCTACTCCACTGATTTCATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAGGCAAAACATGGAGATGCACCTTTTGGAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCTCTTGGAAACCTTCTTACCTACCCATTTGTGAGAGAGGGATTGGTGAACAAAACATTGGCACTAAAAGGAGGATACTATGACTTTGTGAAAGGATCTTTTGAGCTTTGGGGACTTGAATTTGGCCTTTCTTCAACTTTCTCCGTATGA

Protein sequence

>Msa0869420

MSTSSINGFSLSSLSPTKTSIKKVTLRPIVSASLNSSSSSSTSNFPSLIQDKPVFASSSSPIITPVLREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTASADGVPTSEASERIKTGFLHFKKEKYDKNPALYGELAKGQAPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQAKYAGTGSAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGAYSTDFIEEWVKIGLPAKAKVKAKHGDAPFGELCTHCEKEAVNVSLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV*