AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869420 MtrunA17_Chr6g0450641 98.489 331 3 2 1 329 1 331 0.0 656
Msa0869420 MtrunA17_Chr5g0413551 63.566 258 90 1 72 329 3 256 4.42e-122 351
Msa0869420 MtrunA17_Chr8g0365441 64.981 257 85 3 72 328 3 254 1.02e-119 345
Msa0869420 MtrunA17_Chr3g0117661 56.667 240 101 1 78 317 9 245 4.51e-96 285
Msa0869420 MtrunA17_Chr3g0117691 56.250 240 102 1 78 317 9 245 1.02e-94 281
Msa0869420 MtrunA17_Chr2g0279581 51.777 197 92 2 125 321 89 282 4.07e-68 215
Msa0869420 MtrunA17_Chr5g0427341 46.701 197 103 2 125 321 94 288 1.99e-58 190
Msa0869420 MtrunA17_Chr3g0117671 68.182 44 14 0 156 199 1 44 1.13e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869420 AT3G01500.3 68.047 338 97 4 1 329 1 336 5.12e-150 425
Msa0869420 AT3G01500.2 68.047 338 97 4 1 329 1 336 6.83e-150 425
Msa0869420 AT3G01500.4 74.615 260 64 2 71 329 1 259 2.18e-139 395
Msa0869420 AT3G01500.1 74.615 260 64 2 71 329 1 259 4.28e-139 395
Msa0869420 AT5G14740.9 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0869420 AT5G14740.8 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0869420 AT5G14740.7 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0869420 AT5G14740.2 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0869420 AT5G14740.6 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0869420 AT5G14740.1 69.202 263 80 1 67 329 70 331 8.78e-132 379
Msa0869420 AT5G14740.4 68.821 263 80 2 67 329 70 330 2.49e-129 372
Msa0869420 AT5G14740.3 68.061 263 82 2 67 329 70 330 3.98e-128 369
Msa0869420 AT1G70410.3 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa0869420 AT1G70410.1 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa0869420 AT1G70410.2 57.795 263 105 3 68 328 20 278 3.30e-109 319
Msa0869420 AT1G23730.2 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa0869420 AT1G23730.1 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa0869420 AT5G14740.5 66.986 209 68 1 67 275 70 277 3.29e-98 293
Msa0869420 AT4G33580.3 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa0869420 AT4G33580.1 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa0869420 AT4G33580.2 43.933 239 130 4 87 324 48 283 1.38e-61 199
Msa0869420 AT1G58180.7 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0869420 AT1G58180.3 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0869420 AT1G58180.6 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0869420 AT1G58180.2 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa0869420 AT1G58180.4 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa0869420 AT1G58180.1 41.538 195 98 2 123 317 77 255 1.38e-46 158
Msa0869420 AT1G58180.5 45.098 153 83 1 123 275 77 228 5.12e-39 139

Find 112 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTTGGTTACATTAAAA+TGG 0.130582 6_1:-3559005 Msa0869420:five_prime_UTR
TAGCAAACTGGCAGATTATT+TGG 0.156433 6_1:-3554053 Msa0869420:three_prime_UTR
GAGCTTTGGGGACTTGAATT+TGG 0.157327 6_1:-3554658 Msa0869420:CDS
AGAGAGACTAAAGCCGTTTA+TGG 0.187138 6_1:+3558898 None:intergenic
GCCTTCACCTTTGCCTTTGC+AGG 0.194024 6_1:+3555358 None:intergenic
CAGTGCTTGTGGTGGTATTA+AGG 0.198916 6_1:-3555882 Msa0869420:CDS
TTTAGTGTATATACCAAAAC+TGG 0.244721 6_1:+3558719 None:intergenic
TCCTATCATCACCCCAGTTT+TGG 0.256292 6_1:-3558732 Msa0869420:intron
TCTGCCAGTTTGCTAGCTTA+TGG 0.285698 6_1:+3554061 None:intergenic
ATTGAGGAGTGGGTCAAAAT+TGG 0.295969 6_1:-3555385 Msa0869420:CDS
ATAATATGATGAAAGTTTAT+AGG 0.317340 6_1:+3554263 None:intergenic
AACAAAACATTGGCACTAAA+AGG 0.320612 6_1:-3554712 Msa0869420:CDS
AGCTATAATCTCATGCTTAA+AGG 0.323897 6_1:-3554308 Msa0869420:three_prime_UTR
TATCATCTTAAATAAGAGTT+TGG 0.333284 6_1:-3554180 Msa0869420:three_prime_UTR
ACCTTTGGTTACATTAAAAT+GGG 0.337350 6_1:-3559004 Msa0869420:five_prime_UTR
CTTATGGAGAACAAGGAAAA+TGG 0.339322 6_1:+3554077 None:intergenic
AAACATGGAGATGCACCTTT+TGG 0.343398 6_1:-3555334 Msa0869420:CDS
CCATAACCTTAAGGTCCCTT+TGG 0.355894 6_1:+3559119 None:intergenic
CCAAAGGGACCTTAAGGTTA+TGG 0.376245 6_1:-3559119 Msa0869420:five_prime_UTR
AGCAAACTGGCAGATTATTT+GGG 0.383349 6_1:-3554052 Msa0869420:three_prime_UTR
AGTGCTTGTGGTGGTATTAA+GGG 0.402709 6_1:-3555881 Msa0869420:CDS
ACCAATCCCTCTCTCACAAA+TGG 0.406160 6_1:+3554736 None:intergenic
AGGGAAGTTAGAAGTGGAAG+AGG 0.416201 6_1:+3558796 None:intergenic
CAGGCAAAATATGCTGGAAC+TGG 0.423684 6_1:-3556207 Msa0869420:CDS
AAGATGTGGTCATTGATATA+TGG 0.428062 6_1:+3554603 None:intergenic
TTTAGATGAGGTTTGAATGT+TGG 0.429780 6_1:+3559075 None:intergenic
TTAAGAGATGCAGAAACAAT+AGG 0.430244 6_1:+3558830 None:intergenic
ATGTCTACCTCTTCCATAAA+CGG 0.431358 6_1:-3558911 Msa0869420:CDS
CCCATTTGTGAGAGAGGGAT+TGG 0.434089 6_1:-3554737 Msa0869420:CDS
TTGGAACAAACCTGGTCATA+TGG 0.439425 6_1:+3556482 None:intergenic
GGCAATCCAAAGGGACCTTA+AGG 0.446488 6_1:-3559125 Msa0869420:five_prime_UTR
TGATGTGTTCCATGACCAAT+TGG 0.448562 6_1:+3558976 None:intergenic
CTCTCTGAGGCTTCAGATGT+TGG 0.455326 6_1:+3557174 None:intergenic
GAAGCTGTGAATGTTTCTCT+TGG 0.456813 6_1:-3554775 Msa0869420:CDS
GTGTCCAACATTGTGGTCAT+TGG 0.457818 6_1:-3555908 Msa0869420:CDS
CCACAAAAGCTTCACCTGGC+TGG 0.464147 6_1:+3556531 None:intergenic
GTGGAGTAGGCTCCATCAAA+TGG 0.464977 6_1:+3555845 None:intergenic
GCCTCAGAGAGGATCAAAAC+TGG 0.471392 6_1:-3557162 Msa0869420:CDS
ACCAAAACTGGGGTGATGAT+AGG 0.472900 6_1:+3558731 None:intergenic
AAGAGAGAAGAAATGGGAAA+GGG 0.478534 6_1:-3557592 Msa0869420:CDS
AGAGAATGACCATAACCTTA+AGG 0.482720 6_1:+3559110 None:intergenic
TTCTCCATAAGCTAGCAAAC+TGG 0.482838 6_1:-3554065 Msa0869420:three_prime_UTR
AGCAAGAATCCAGCTTTGTA+TGG 0.484367 6_1:-3557009 Msa0869420:CDS
ACTAAAGCCGTTTATGGAAG+AGG 0.493880 6_1:+3558904 None:intergenic
CAAAATTGGTTTACCTGCAA+AGG 0.494116 6_1:-3555371 Msa0869420:CDS
TCACAAATGGGTAGGTAAGA+AGG 0.496271 6_1:+3554749 None:intergenic
TTAAAATGGGGATACCCAAT+TGG 0.496847 6_1:-3558991 Msa0869420:five_prime_UTR
ACCTACCCATTTGTGAGAGA+GGG 0.496970 6_1:-3554742 Msa0869420:CDS
TTGAGAAAACATATAACAAA+AGG 0.498303 6_1:-3559164 Msa0869420:five_prime_UTR
TAGGGAGAAGACTGAATTGA+AGG 0.501912 6_1:-3557265 Msa0869420:CDS
ATTTCTCTTTCTTGAAGTGA+AGG 0.503283 6_1:+3557136 None:intergenic
GCTAGTTCACCATACAAAGC+TGG 0.504395 6_1:+3557000 None:intergenic
CCAATCCCTCTCTCACAAAT+GGG 0.504979 6_1:+3554737 None:intergenic
TTGTAACAGGCAAAATATGC+TGG 0.509487 6_1:-3556213 Msa0869420:intron
GGTGATGATAGGAGAAGAAG+AGG 0.514997 6_1:+3558742 None:intergenic
TAAGAGAGAAGAAATGGGAA+AGG 0.517223 6_1:-3557593 Msa0869420:intron
GTGCTTGTGGTGGTATTAAG+GGG 0.524502 6_1:-3555880 Msa0869420:CDS
CATGTGCTAGATTTCCAGCC+AGG 0.532787 6_1:-3556545 Msa0869420:CDS
ATATATGGTTGATGTTCATA+CGG 0.533962 6_1:+3554618 None:intergenic
TGGAAATCTAGCACATGAGA+TGG 0.535400 6_1:+3556551 None:intergenic
CTGACCACAAAAGCTTCACC+TGG 0.540212 6_1:+3556527 None:intergenic
TATATGAGACACTATGAACT+TGG 0.542115 6_1:-3554232 Msa0869420:three_prime_UTR
GTCATTGGACACAGTGCTTG+TGG 0.548047 6_1:-3555893 Msa0869420:CDS
ACCTGCAAAGGCAAAGGTGA+AGG 0.548551 6_1:-3555359 Msa0869420:CDS
TGGTTTACCTGCAAAGGCAA+AGG 0.549043 6_1:-3555365 Msa0869420:CDS
TGAAAACGAAAGTTAAGCTA+AGG 0.549996 6_1:+3559033 None:intergenic
AAGAGAAGGGAAGTTAGAAG+TGG 0.550503 6_1:+3558790 None:intergenic
GTATGCTGTTCTTCATCTCA+AGG 0.550648 6_1:-3556172 Msa0869420:intron
TACCTACCCATTTGTGAGAG+AGG 0.551671 6_1:-3554743 Msa0869420:CDS
CAGTGATTTCATTGAGGAGT+GGG 0.552604 6_1:-3555395 Msa0869420:CDS
CATGGTTCCACCATATGACC+AGG 0.558972 6_1:-3556492 Msa0869420:intron
GCAAAGGTGAAGGCAAAACA+TGG 0.559880 6_1:-3555349 Msa0869420:CDS
CAAGAACAAGGCAATCCAAA+GGG 0.560918 6_1:-3559134 Msa0869420:five_prime_UTR
TGGGGATACCCAATTGGTCA+TGG 0.564321 6_1:-3558985 Msa0869420:five_prime_UTR
ATACGGAGAAAGTTGAAGAA+AGG 0.569824 6_1:+3554635 None:intergenic
GGAACAACAGCATCAGCTGA+TGG 0.577121 6_1:-3557201 Msa0869420:CDS
GGCTTGTCTTGAATAAGAGA+AGG 0.579265 6_1:+3558776 None:intergenic
TTGCTAGCTTATGGAGAACA+AGG 0.584211 6_1:+3554070 None:intergenic
GGTCAGAAATGTTGCTAACA+TGG 0.584570 6_1:-3556510 Msa0869420:CDS
GGAAATCTAGCACATGAGAT+GGG 0.585270 6_1:+3556552 None:intergenic
CCTATAGGTGTCCAACATTG+TGG 0.589585 6_1:-3555915 Msa0869420:intron
GCAGTGATTTCATTGAGGAG+TGG 0.590746 6_1:-3555396 Msa0869420:intron
ATGAAGAACAGCATACTCAA+TGG 0.592490 6_1:+3556179 None:intergenic
ATAAGATGATACATTTGTGA+AGG 0.594046 6_1:-3559191 Msa0869420:five_prime_UTR
ATGTGGCCACGGTTCTACAT+TGG 0.595438 6_1:-3554332 Msa0869420:three_prime_UTR
CCTTTGGTTACATTAAAATG+GGG 0.596627 6_1:-3559003 Msa0869420:five_prime_UTR
TGTGTGCATAGCTCTCCAAA+AGG 0.602700 6_1:+3555319 None:intergenic
GGATACTATGACTTTGTGAA+AGG 0.603419 6_1:-3554688 Msa0869420:CDS
GCTTGTCTTGAATAAGAGAA+GGG 0.603502 6_1:+3558777 None:intergenic
GATGTGTTCCATGACCAATT+GGG 0.610561 6_1:+3558977 None:intergenic
GAGCAAATTACAGCTCAGCT+AGG 0.613484 6_1:-3557222 Msa0869420:CDS
GTGTCCAATGACCACAATGT+TGG 0.616398 6_1:+3555904 None:intergenic
GAACAAACCTGGTCATATGG+TGG 0.621340 6_1:+3556485 None:intergenic
TTAGGTAAAAGATGTGGCCA+CGG 0.621466 6_1:-3554343 Msa0869420:intron
GTCGTGTGTCTGCAATGAAG+AGG 0.622417 6_1:-3554286 Msa0869420:three_prime_UTR
TTAGTGTATATACCAAAACT+GGG 0.627773 6_1:+3558720 None:intergenic
GGGATTGGTGAACAAAACAT+TGG 0.629368 6_1:-3554722 Msa0869420:CDS
ACAAGAACAAGGCAATCCAA+AGG 0.634465 6_1:-3559135 Msa0869420:five_prime_UTR
GCTATGCACACACTGTGAGA+AGG 0.643279 6_1:-3555308 Msa0869420:intron
ATACTTAGGTAATCAAGATG+TGG 0.649188 6_1:+3554589 None:intergenic
AAAACATTGGCACTAAAAGG+AGG 0.653225 6_1:-3554709 Msa0869420:CDS
ATAGTCATTGCATACCGGGG+GGG 0.655182 6_1:+3556966 None:intergenic
TTGTATGGTGAACTAGCCAA+AGG 0.656155 6_1:-3556994 Msa0869420:CDS
TCCCTCTCTCACAAATGGGT+AGG 0.656447 6_1:+3554741 None:intergenic
ATTGGACACAGTGCTTGTGG+TGG 0.669101 6_1:-3555890 Msa0869420:CDS
AATGGGAAAGGGCTATGATG+AGG 0.670505 6_1:-3557581 Msa0869420:CDS
TGTGTGCAGTGATTTCATTG+AGG 0.680762 6_1:-3555401 Msa0869420:intron
AAAGGTAAATGACAAGAACA+AGG 0.700282 6_1:-3559146 Msa0869420:five_prime_UTR
CAACATCTGAAGCCTCAGAG+AGG 0.708925 6_1:-3557173 Msa0869420:CDS
TGTTTGTTAGGTAAAAGATG+TGG 0.720567 6_1:-3554349 Msa0869420:intron
TAGTGTATATACCAAAACTG+GGG 0.721851 6_1:+3558721 None:intergenic
TAGCTTCCAATGTAGAACCG+TGG 0.724891 6_1:+3554326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATATATAGTTTTAATTT+TGG + chr6_1:3555187-3555206 None:intergenic 10.0%
!! CAAAATTAAAACTATATATT+AGG - chr6_1:3555185-3555204 Msa0869420:intron 10.0%
!! TAGTATAATATTTCAAATAT+AGG - chr6_1:3555907-3555926 Msa0869420:CDS 10.0%
!! AGTATAATATTTCAAATATA+GGG - chr6_1:3555908-3555927 Msa0869420:CDS 10.0%
!! AAAGATATAAGTAATTATAA+AGG + chr6_1:3556112-3556131 None:intergenic 10.0%
!!! TTTTTGGAAAAAAAAAAAAA+CGG + chr6_1:3557115-3557134 None:intergenic 10.0%
!!! TTGATTTCAATTTTTTTTTT+TGG + chr6_1:3557131-3557150 None:intergenic 10.0%
!!! AATTTTACTATTGAATATTT+TGG - chr6_1:3557528-3557547 Msa0869420:intron 10.0%
!!! ATTTTACTATTGAATATTTT+GGG - chr6_1:3557529-3557548 Msa0869420:intron 10.0%
!!! TATTAGTCTTAATTTTTTAT+AGG - chr6_1:3558263-3558282 Msa0869420:intron 10.0%
!! AAAGTAACATTATTATAATT+TGG + chr6_1:3558747-3558766 None:intergenic 10.0%
!!! AACTTTTTTAATAGAAGTTT+TGG + chr6_1:3554332-3554351 None:intergenic 15.0%
!!! AAGAAAAATTTAGAGTTAAA+TGG - chr6_1:3554621-3554640 Msa0869420:exon 15.0%
!!! AAAAAATTTGGTTAGTTATA+TGG + chr6_1:3555143-3555162 None:intergenic 15.0%
!! AGTAAATAAATAGTACTATA+AGG + chr6_1:3555400-3555419 None:intergenic 15.0%
!! TATAGTACTATTTATTTACT+TGG - chr6_1:3555400-3555419 Msa0869420:intron 15.0%
!!! TAATGAAATTTTAGTCTTTA+GGG + chr6_1:3555476-3555495 None:intergenic 15.0%
!!! TTAATGAAATTTTAGTCTTT+AGG + chr6_1:3555477-3555496 None:intergenic 15.0%
!!! AAATAATGAAAAGTGATTTT+TGG + chr6_1:3555517-3555536 None:intergenic 15.0%
!!! ACTTTTCATTATTTCTTTTT+AGG - chr6_1:3555523-3555542 Msa0869420:intron 15.0%
!! ATTATTGACCAAATATAAAT+CGG - chr6_1:3556322-3556341 Msa0869420:intron 15.0%
!! GTTAAAATCAAAATATTTGT+AGG + chr6_1:3556415-3556434 None:intergenic 15.0%
!!! AACATACATATATTTCATTT+TGG - chr6_1:3556851-3556870 Msa0869420:intron 15.0%
!! ATACAAATTATACTCAAAAA+AGG - chr6_1:3556924-3556943 Msa0869420:intron 15.0%
!! TGATTCTAATTATTAAATGT+TGG + chr6_1:3557479-3557498 None:intergenic 15.0%
!! ATAATATGATGAAAGTTTAT+AGG + chr6_1:3558931-3558950 None:intergenic 15.0%
!! TTGAGAAAACATATAACAAA+AGG - chr6_1:3554027-3554046 Msa0869420:three_prime_UTR 20.0%
!!! TTTTAATAGAAGTTTTGGTA+GGG + chr6_1:3554327-3554346 None:intergenic 20.0%
!!! TTTTTAATAGAAGTTTTGGT+AGG + chr6_1:3554328-3554347 None:intergenic 20.0%
!! ATATGTATATGTATATGTCA+TGG - chr6_1:3554718-3554737 Msa0869420:CDS 20.0%
!!! TAATTCCTTTTCTCAATAAT+AGG + chr6_1:3554869-3554888 None:intergenic 20.0%
!!! AAAAGTACAGATAGAATTTT+GGG + chr6_1:3554965-3554984 None:intergenic 20.0%
!! TCTTTAGCAATCTATTAAAT+TGG - chr6_1:3555043-3555062 Msa0869420:intron 20.0%
!! TTAAATTGGTAAGTTTAGTT+AGG - chr6_1:3555057-3555076 Msa0869420:intron 20.0%
!!! TAGAAAAAACTAGTTTTGAA+TGG + chr6_1:3555307-3555326 None:intergenic 20.0%
!!! ATATTTTAAGAGAGAAGAAA+TGG - chr6_1:3555592-3555611 Msa0869420:intron 20.0%
!!! TATTTTAAGAGAGAAGAAAT+GGG - chr6_1:3555593-3555612 Msa0869420:intron 20.0%
!! TATATAATTCTAATAGGAGA+AGG + chr6_1:3555678-3555697 None:intergenic 20.0%
!! AAATAATTATCATCGATGTT+AGG + chr6_1:3555781-3555800 None:intergenic 20.0%
!! AAAGAAAACAATGAAAAGTT+AGG + chr6_1:3556578-3556597 None:intergenic 20.0%
!! AAAAGATGCATTTGTATAAT+TGG + chr6_1:3556731-3556750 None:intergenic 20.0%
!!! ATATATGCTTAATTTGTAAC+AGG - chr6_1:3556965-3556984 Msa0869420:intron 20.0%
!! TAGGAAGAAAAAAAATTGTT+GGG + chr6_1:3557260-3557279 None:intergenic 20.0%
!! ATAGGAAGAAAAAAAATTGT+TGG + chr6_1:3557261-3557280 None:intergenic 20.0%
!!! ACAATTTTTTTTCTTCCTAT+AGG - chr6_1:3557261-3557280 Msa0869420:CDS 20.0%
!! TTGGTCTAAATAATTAAAAG+TGG + chr6_1:3557460-3557479 None:intergenic 20.0%
!! TTTATCAGTTGAAATTCAAA+TGG - chr6_1:3558021-3558040 Msa0869420:intron 20.0%
!! TGATAATATTGACATTTATC+TGG + chr6_1:3558154-3558173 None:intergenic 20.0%
!!! TTATAAAAAATAAAGGGTGT+TGG + chr6_1:3558194-3558213 None:intergenic 20.0%
!! TATAAAAGTAAATGCTCAAA+AGG - chr6_1:3558209-3558228 Msa0869420:intron 20.0%
!! ATAAAAGTAAATGCTCAAAA+GGG - chr6_1:3558210-3558229 Msa0869420:intron 20.0%
!! TTAAAATTTGAATTATGTGC+AGG - chr6_1:3558394-3558413 Msa0869420:intron 20.0%
!! AGCTCATAATTAATTAACAA+GGG + chr6_1:3558659-3558678 None:intergenic 20.0%
!! TAGCTCATAATTAATTAACA+AGG + chr6_1:3558660-3558679 None:intergenic 20.0%
!!! CCATCTACATTTATTTATTT+TGG + chr6_1:3558687-3558706 None:intergenic 20.0%
!! CCAAAATAAATAAATGTAGA+TGG - chr6_1:3558684-3558703 Msa0869420:intron 20.0%
!! AACAAACAACAAAAATTTAG+TGG + chr6_1:3558830-3558849 None:intergenic 20.0%
!!! CTAAATTTTTGTTGTTTGTT+AGG - chr6_1:3558830-3558849 Msa0869420:CDS 20.0%
!! TATCATCTTAAATAAGAGTT+TGG - chr6_1:3559011-3559030 Msa0869420:five_prime_UTR 20.0%
!!! GAAGCAAAATTTTCAATATA+TGG - chr6_1:3559044-3559063 Msa0869420:five_prime_UTR 20.0%
! TACCTTTGGTTACATTAAAA+TGG - chr6_1:3554186-3554205 Msa0869420:three_prime_UTR 25.0%
! ACCTTTGGTTACATTAAAAT+GGG - chr6_1:3554187-3554206 Msa0869420:three_prime_UTR 25.0%
!!! TTTAATAGAAGTTTTGGTAG+GGG + chr6_1:3554326-3554345 None:intergenic 25.0%
! TTAGTGTATATACCAAAACT+GGG + chr6_1:3554474-3554493 None:intergenic 25.0%
! TTTAGTGTATATACCAAAAC+TGG + chr6_1:3554475-3554494 None:intergenic 25.0%
! ATTCTTCTAATGTCATGTAT+TGG - chr6_1:3554537-3554556 Msa0869420:intron 25.0%
!!! ATATGTCATGGCATTTTTTA+AGG - chr6_1:3554730-3554749 Msa0869420:CDS 25.0%
! AAGTACCTATTATTGAGAAA+AGG - chr6_1:3554861-3554880 Msa0869420:intron 25.0%
!!! CAAAAGTACAGATAGAATTT+TGG + chr6_1:3554966-3554985 None:intergenic 25.0%
!! CAAAATTCTATCTGTACTTT+TGG - chr6_1:3554964-3554983 Msa0869420:intron 25.0%
!!! TAGGTGAATTTGTTTTGTAT+AGG - chr6_1:3555204-3555223 Msa0869420:intron 25.0%
!!! AGGTGAATTTGTTTTGTATA+GGG - chr6_1:3555205-3555224 Msa0869420:intron 25.0%
! ACACATTACTATAGAAGAAA+AGG - chr6_1:3555280-3555299 Msa0869420:intron 25.0%
!!! TATACTTAATTTTTGGTGTG+TGG + chr6_1:3555350-3555369 None:intergenic 25.0%
!! GACATGGTATACTTAATTTT+TGG + chr6_1:3555357-3555376 None:intergenic 25.0%
! TAGGGTACATATGAAAAATA+TGG + chr6_1:3555458-3555477 None:intergenic 25.0%
!! AGATTTACCTCAACAATTTT+TGG + chr6_1:3555649-3555668 None:intergenic 25.0%
! AATAAATAGTCATTGCATAC+CGG + chr6_1:3556233-3556252 None:intergenic 25.0%
! ATATTTGGTCAATAATTTCG+AGG + chr6_1:3556318-3556337 None:intergenic 25.0%
!! TTTAGAGACCGATTTATATT+TGG + chr6_1:3556333-3556352 None:intergenic 25.0%
! ATATAAATCGGTCTCTAAAT+CGG - chr6_1:3556334-3556353 Msa0869420:intron 25.0%
! TCCAATCAAATAAAATCTCA+TGG - chr6_1:3556387-3556406 Msa0869420:intron 25.0%
!!! ACCATGAGATTTTATTTGAT+TGG + chr6_1:3556391-3556410 None:intergenic 25.0%
! TGAAAACCAATATGATGTTA+TGG - chr6_1:3556445-3556464 Msa0869420:intron 25.0%
!! TGTTTTCTTTTTCCAGTTTA+TGG - chr6_1:3556588-3556607 Msa0869420:CDS 25.0%
!!! CATCTTTTTTGACTTGTATA+TGG - chr6_1:3556743-3556762 Msa0869420:intron 25.0%
! ACTTCAGATTGAATATATGT+CGG + chr6_1:3556880-3556899 None:intergenic 25.0%
!! ATATATTCAATCTGAAGTGT+CGG - chr6_1:3556882-3556901 Msa0869420:intron 25.0%
! TCTACTTATACTTAGATTGA+TGG + chr6_1:3557679-3557698 None:intergenic 25.0%
! GTGAACTATAAGACAAATAT+TGG + chr6_1:3557962-3557981 None:intergenic 25.0%
!! ATATATGGTTGATGTTCATA+CGG + chr6_1:3558576-3558595 None:intergenic 25.0%
!!! ACATATAGTACATTTTAGAG+AGG + chr6_1:3558631-3558650 None:intergenic 25.0%
!! AGCTTTGTATAAATGATTGA+TGG + chr6_1:3558724-3558743 None:intergenic 25.0%
!! TGAGAGAAAAGTGTAATTTA+TGG - chr6_1:3558791-3558810 Msa0869420:CDS 25.0%
! AGAAAAAAGAATACTTTCGT+AGG + chr6_1:3559086-3559105 None:intergenic 25.0%
AAAGGTAAATGACAAGAACA+AGG - chr6_1:3554045-3554064 Msa0869420:three_prime_UTR 30.0%
TTTAGATGAGGTTTGAATGT+TGG + chr6_1:3554119-3554138 None:intergenic 30.0%
CAAACCTCATCTAAAAAGAT+AGG - chr6_1:3554124-3554143 Msa0869420:three_prime_UTR 30.0%
! CATTCCTATCTTTTTAGATG+AGG + chr6_1:3554131-3554150 None:intergenic 30.0%
TGAAAACGAAAGTTAAGCTA+AGG + chr6_1:3554161-3554180 None:intergenic 30.0%
! TCGTTTTCATTATCTACCTT+TGG - chr6_1:3554172-3554191 Msa0869420:three_prime_UTR 30.0%
CCTTTGGTTACATTAAAATG+GGG - chr6_1:3554188-3554207 Msa0869420:three_prime_UTR 30.0%
TTAAGAGATGCAGAAACAAT+AGG + chr6_1:3554364-3554383 None:intergenic 30.0%
TAGTGTATATACCAAAACTG+GGG + chr6_1:3554473-3554492 None:intergenic 30.0%
ACACTAAAACTAATGCACTT+TGG - chr6_1:3554487-3554506 Msa0869420:intron 30.0%
TGTTTGATTCTTCGATAAAG+TGG - chr6_1:3554684-3554703 Msa0869420:CDS 30.0%
GTTTGATTCTTCGATAAAGT+GGG - chr6_1:3554685-3554704 Msa0869420:CDS 30.0%
TGACATAATAGTGAGTCTAT+TGG - chr6_1:3554773-3554792 Msa0869420:CDS 30.0%
AAGACAAAGATTTGCCATTA+GGG + chr6_1:3554823-3554842 None:intergenic 30.0%
AAAGACAAAGATTTGCCATT+AGG + chr6_1:3554824-3554843 None:intergenic 30.0%
GGTACTTAGCTATATACATT+TGG + chr6_1:3554848-3554867 None:intergenic 30.0%
! TCTAAAGTATAGTATTCACG+TGG - chr6_1:3555004-3555023 Msa0869420:intron 30.0%
GTAAGTTTAGTTAGGTTTGA+GGG - chr6_1:3555065-3555084 Msa0869420:intron 30.0%
!!! GGTGAATTTGTTTTGTATAG+GGG - chr6_1:3555206-3555225 Msa0869420:intron 30.0%
AGAAAAGTTCAAATTGGACA+TGG + chr6_1:3555373-3555392 None:intergenic 30.0%
GGTCTAAGAAAAGTTCAAAT+TGG + chr6_1:3555379-3555398 None:intergenic 30.0%
TGACAATTACGAACAATTGA+CGG + chr6_1:3555744-3555763 None:intergenic 30.0%
! TCTAAAGTCACGTATATGAT+TGG - chr6_1:3555800-3555819 Msa0869420:intron 30.0%
ATTTCTCTTTCTTGAAGTGA+AGG + chr6_1:3556058-3556077 None:intergenic 30.0%
ATAAATAGTCATTGCATACC+GGG + chr6_1:3556232-3556251 None:intergenic 30.0%
CTCTAACCATAACATCATAT+TGG + chr6_1:3556454-3556473 None:intergenic 30.0%
! TGGTTAGAGTGAAATTTGTT+TGG - chr6_1:3556465-3556484 Msa0869420:intron 30.0%
TTGTATAATTGGAACAAACC+TGG + chr6_1:3556720-3556739 None:intergenic 30.0%
ATACTGATAAATGTACACTG+CGG - chr6_1:3556795-3556814 Msa0869420:intron 30.0%
CTACACACAAATTCATCTAT+AGG - chr6_1:3557065-3557084 Msa0869420:intron 30.0%
! CTTTTGTCTTTTCCATTTGA+TGG - chr6_1:3557334-3557353 Msa0869420:intron 30.0%
GGAAAAAAAAAAGACTTACG+TGG + chr6_1:3557368-3557387 None:intergenic 30.0%
AGAAAAGTTAGTGTAGGTAA+AGG + chr6_1:3557389-3557408 None:intergenic 30.0%
CCAGTCATACACTAAATAAA+GGG + chr6_1:3557560-3557579 None:intergenic 30.0%
TCCAGTCATACACTAAATAA+AGG + chr6_1:3557561-3557580 None:intergenic 30.0%
TTAGTGTATGACTGGATTAA+CGG - chr6_1:3557565-3557584 Msa0869420:CDS 30.0%
GTTCAACCAATTTAATGTCT+AGG - chr6_1:3557721-3557740 Msa0869420:intron 30.0%
TCACTTCCTAGACATTAAAT+TGG + chr6_1:3557730-3557749 None:intergenic 30.0%
ACTGCACACAACAAAATAAA+GGG + chr6_1:3557780-3557799 None:intergenic 30.0%
TGGATTTCACGAAATTTATG+TGG - chr6_1:3558041-3558060 Msa0869420:intron 30.0%
TAGCGATGATAAACAATGAT+TGG - chr6_1:3558341-3558360 Msa0869420:intron 30.0%
AACAAAACATTGGCACTAAA+AGG - chr6_1:3558479-3558498 Msa0869420:intron 30.0%
AAGATGTGGTCATTGATATA+TGG + chr6_1:3558591-3558610 None:intergenic 30.0%
ATACTTAGGTAATCAAGATG+TGG + chr6_1:3558605-3558624 None:intergenic 30.0%
!! TTTTAGAGAGGAGAATACTT+AGG + chr6_1:3558619-3558638 None:intergenic 30.0%
! TGTTTGTTAGGTAAAAGATG+TGG - chr6_1:3558842-3558861 Msa0869420:CDS 30.0%
AGCTATAATCTCATGCTTAA+AGG - chr6_1:3558883-3558902 Msa0869420:CDS 30.0%
TATATGAGACACTATGAACT+TGG - chr6_1:3558959-3558978 Msa0869420:five_prime_UTR 30.0%
AGAGAATGACCATAACCTTA+AGG + chr6_1:3554084-3554103 None:intergenic 35.0%
!! CCCCATTTTAATGTAACCAA+AGG + chr6_1:3554191-3554210 None:intergenic 35.0%
TTAAAATGGGGATACCCAAT+TGG - chr6_1:3554200-3554219 Msa0869420:three_prime_UTR 35.0%
ATGTCTACCTCTTCCATAAA+CGG - chr6_1:3554280-3554299 Msa0869420:three_prime_UTR 35.0%
GCTTGTCTTGAATAAGAGAA+GGG + chr6_1:3554417-3554436 None:intergenic 35.0%
CATAGTCGTACAAATGAACA+AGG + chr6_1:3554597-3554616 None:intergenic 35.0%
!!! GTCTATTGGTTTTGTGTCTT+TGG - chr6_1:3554787-3554806 Msa0869420:intron 35.0%
!! GGTTTTGTGTCTTTGGTTAT+TGG - chr6_1:3554794-3554813 Msa0869420:intron 35.0%
AGACAAAGATTTGCCATTAG+GGG + chr6_1:3554822-3554841 None:intergenic 35.0%
GGTAAGTTTAGTTAGGTTTG+AGG - chr6_1:3555064-3555083 Msa0869420:intron 35.0%
! TTTGGTTAGTTATATGGTGC+TGG + chr6_1:3555137-3555156 None:intergenic 35.0%
TAACTAATCACACACTTCTC+TGG + chr6_1:3555233-3555252 None:intergenic 35.0%
TAAGAGAGAAGAAATGGGAA+AGG - chr6_1:3555598-3555617 Msa0869420:intron 35.0%
AAGAGAGAAGAAATGGGAAA+GGG - chr6_1:3555599-3555618 Msa0869420:intron 35.0%
AAGAGCTCCAAAAATTGTTG+AGG - chr6_1:3555639-3555658 Msa0869420:intron 35.0%
TAAATAGTCATTGCATACCG+GGG + chr6_1:3556231-3556250 None:intergenic 35.0%
TTGTAACAGGCAAAATATGC+TGG - chr6_1:3556978-3556997 Msa0869420:intron 35.0%
ATGAAGAACAGCATACTCAA+TGG + chr6_1:3557015-3557034 None:intergenic 35.0%
AAAAAAGACTTACGTGGAGT+AGG + chr6_1:3557362-3557381 None:intergenic 35.0%
! CCCTTTATTTAGTGTATGAC+TGG - chr6_1:3557557-3557576 Msa0869420:CDS 35.0%
CACTGCACACAACAAAATAA+AGG + chr6_1:3557781-3557800 None:intergenic 35.0%
! CAAAATTGGTTTACCTGCAA+AGG - chr6_1:3557820-3557839 Msa0869420:intron 35.0%
AAAACATTGGCACTAAAAGG+AGG - chr6_1:3558482-3558501 Msa0869420:intron 35.0%
GGATACTATGACTTTGTGAA+AGG - chr6_1:3558503-3558522 Msa0869420:intron 35.0%
! TGAAAGGATCTTTTGAGCTT+TGG - chr6_1:3558519-3558538 Msa0869420:intron 35.0%
! GAAAGGATCTTTTGAGCTTT+GGG - chr6_1:3558520-3558539 Msa0869420:intron 35.0%
! AAAGGATCTTTTGAGCTTTG+GGG - chr6_1:3558521-3558540 Msa0869420:intron 35.0%
ATACGGAGAAAGTTGAAGAA+AGG + chr6_1:3558559-3558578 None:intergenic 35.0%
CTTATGGAGAACAAGGAAAA+TGG + chr6_1:3559117-3559136 None:intergenic 35.0%
TAGCAAACTGGCAGATTATT+TGG - chr6_1:3559138-3559157 Msa0869420:five_prime_UTR 35.0%
AGCAAACTGGCAGATTATTT+GGG - chr6_1:3559139-3559158 Msa0869420:five_prime_UTR 35.0%
ACAAGAACAAGGCAATCCAA+AGG - chr6_1:3554056-3554075 Msa0869420:three_prime_UTR 40.0%
CAAGAACAAGGCAATCCAAA+GGG - chr6_1:3554057-3554076 Msa0869420:three_prime_UTR 40.0%
GATGTGTTCCATGACCAATT+GGG + chr6_1:3554217-3554236 None:intergenic 40.0%
TGATGTGTTCCATGACCAAT+TGG + chr6_1:3554218-3554237 None:intergenic 40.0%
ACTAAAGCCGTTTATGGAAG+AGG + chr6_1:3554290-3554309 None:intergenic 40.0%
AGAGAGACTAAAGCCGTTTA+TGG + chr6_1:3554296-3554315 None:intergenic 40.0%
AAGAGAAGGGAAGTTAGAAG+TGG + chr6_1:3554404-3554423 None:intergenic 40.0%
GGCTTGTCTTGAATAAGAGA+AGG + chr6_1:3554418-3554437 None:intergenic 40.0%
GAAGAAGAGGAAGCAAAAAC+AGG + chr6_1:3554439-3554458 None:intergenic 40.0%
GACAAAGATTTGCCATTAGG+GGG + chr6_1:3554821-3554840 None:intergenic 40.0%
!! GTTAGTTATATGGTGCTGGT+TGG + chr6_1:3555133-3555152 None:intergenic 40.0%
TAGGGAGAAGACTGAATTGA+AGG - chr6_1:3555926-3555945 Msa0869420:intron 40.0%
! AGCAAGAATCCAGCTTTGTA+TGG - chr6_1:3556182-3556201 Msa0869420:CDS 40.0%
TTGTATGGTGAACTAGCCAA+AGG - chr6_1:3556197-3556216 Msa0869420:CDS 40.0%
AAATAGTCATTGCATACCGG+GGG + chr6_1:3556230-3556249 None:intergenic 40.0%
AGCATGCAAAGACCATAAAC+TGG + chr6_1:3556603-3556622 None:intergenic 40.0%
GGAAATCTAGCACATGAGAT+GGG + chr6_1:3556642-3556661 None:intergenic 40.0%
TGGAAATCTAGCACATGAGA+TGG + chr6_1:3556643-3556662 None:intergenic 40.0%
GGTCAGAAATGTTGCTAACA+TGG - chr6_1:3556681-3556700 Msa0869420:intron 40.0%
TTGGAACAAACCTGGTCATA+TGG + chr6_1:3556712-3556731 None:intergenic 40.0%
GTATGCTGTTCTTCATCTCA+AGG - chr6_1:3557019-3557038 Msa0869420:intron 40.0%
AGTGCTTGTGGTGGTATTAA+GGG - chr6_1:3557310-3557329 Msa0869420:intron 40.0%
GGCACTAGAAAAGTTAGTGT+AGG + chr6_1:3557395-3557414 None:intergenic 40.0%
!! TTTTCTAGTGCCACCTCTTA+TGG - chr6_1:3557403-3557422 Msa0869420:intron 40.0%
ATCCTTCCAAGTTCCATAAG+AGG + chr6_1:3557419-3557438 None:intergenic 40.0%
AACGGTGACTTTGACAGAAT+TGG - chr6_1:3557583-3557602 Msa0869420:CDS 40.0%
ACGGTGACTTTGACAGAATT+GGG - chr6_1:3557584-3557603 Msa0869420:CDS 40.0%
!! ACTTAGATTGATGGTGACTG+TGG + chr6_1:3557670-3557689 None:intergenic 40.0%
TGTGTGCAGTGATTTCATTG+AGG - chr6_1:3557790-3557809 Msa0869420:intron 40.0%
CAGTGATTTCATTGAGGAGT+GGG - chr6_1:3557796-3557815 Msa0869420:intron 40.0%
ATTGAGGAGTGGGTCAAAAT+TGG - chr6_1:3557806-3557825 Msa0869420:intron 40.0%
! AAACATGGAGATGCACCTTT+TGG - chr6_1:3557857-3557876 Msa0869420:intron 40.0%
GAAGCTGTGAATGTTTCTCT+TGG - chr6_1:3558416-3558435 Msa0869420:intron 40.0%
TCACAAATGGGTAGGTAAGA+AGG + chr6_1:3558445-3558464 None:intergenic 40.0%
! GGGATTGGTGAACAAAACAT+TGG - chr6_1:3558469-3558488 Msa0869420:intron 40.0%
TTAGGTAAAAGATGTGGCCA+CGG - chr6_1:3558848-3558867 Msa0869420:CDS 40.0%
! TTGCTAGCTTATGGAGAACA+AGG + chr6_1:3559124-3559143 None:intergenic 40.0%
TTCTCCATAAGCTAGCAAAC+TGG - chr6_1:3559126-3559145 Msa0869420:five_prime_UTR 40.0%
CCATAACCTTAAGGTCCCTT+TGG + chr6_1:3554075-3554094 None:intergenic 45.0%
CCAAAGGGACCTTAAGGTTA+TGG - chr6_1:3554072-3554091 Msa0869420:three_prime_UTR 45.0%
AGGGAAGTTAGAAGTGGAAG+AGG + chr6_1:3554398-3554417 None:intergenic 45.0%
GGTGATGATAGGAGAAGAAG+AGG + chr6_1:3554452-3554471 None:intergenic 45.0%
! TCCTATCATCACCCCAGTTT+TGG - chr6_1:3554459-3554478 Msa0869420:intron 45.0%
ACCAAAACTGGGGTGATGAT+AGG + chr6_1:3554463-3554482 None:intergenic 45.0%
TTGGTTATTGGTCCCCCTAA+TGG - chr6_1:3554806-3554825 Msa0869420:intron 45.0%
AGGTTTGAGGGACAAATGTG+TGG - chr6_1:3555077-3555096 Msa0869420:intron 45.0%
AATGGGAAAGGGCTATGATG+AGG - chr6_1:3555610-3555629 Msa0869420:intron 45.0%
!!! CTCAACTTTTTCAGCTGCTG+TGG + chr6_1:3555952-3555971 None:intergenic 45.0%
GAGCAAATTACAGCTCAGCT+AGG - chr6_1:3555969-3555988 Msa0869420:intron 45.0%
!! ACCAGTTTTGATCCTCTCTG+AGG + chr6_1:3556033-3556052 None:intergenic 45.0%
ACAAAGCTGGATTCTTGCTG+TGG + chr6_1:3556181-3556200 None:intergenic 45.0%
GCTAGTTCACCATACAAAGC+TGG + chr6_1:3556194-3556213 None:intergenic 45.0%
AATAGTCATTGCATACCGGG+GGG + chr6_1:3556229-3556248 None:intergenic 45.0%
GAACAAACCTGGTCATATGG+TGG + chr6_1:3556709-3556728 None:intergenic 45.0%
TATCGTGTCCGTGTTTGAGT+CGG + chr6_1:3556778-3556797 None:intergenic 45.0%
CAGGCAAAATATGCTGGAAC+TGG - chr6_1:3556984-3557003 Msa0869420:CDS 45.0%
CCACAATGTTGGACACCTAT+AGG + chr6_1:3557279-3557298 None:intergenic 45.0%
CCTATAGGTGTCCAACATTG+TGG - chr6_1:3557276-3557295 Msa0869420:intron 45.0%
GTGTCCAACATTGTGGTCAT+TGG - chr6_1:3557283-3557302 Msa0869420:intron 45.0%
GTGTCCAATGACCACAATGT+TGG + chr6_1:3557290-3557309 None:intergenic 45.0%
CAGTGCTTGTGGTGGTATTA+AGG - chr6_1:3557309-3557328 Msa0869420:intron 45.0%
GTGCTTGTGGTGGTATTAAG+GGG - chr6_1:3557311-3557330 Msa0869420:intron 45.0%
CTTCCAAGTTCCATAAGAGG+TGG + chr6_1:3557416-3557435 None:intergenic 45.0%
CACCTCTTATGGAACTTGGA+AGG - chr6_1:3557414-3557433 Msa0869420:intron 45.0%
CGGTGACTTTGACAGAATTG+GGG - chr6_1:3557585-3557604 Msa0869420:CDS 45.0%
TGGTGACTGTGGAAGAATTG+CGG + chr6_1:3557659-3557678 None:intergenic 45.0%
GCAGTGATTTCATTGAGGAG+TGG - chr6_1:3557795-3557814 Msa0869420:intron 45.0%
TGGTTTACCTGCAAAGGCAA+AGG - chr6_1:3557826-3557845 Msa0869420:intron 45.0%
GCAAAGGTGAAGGCAAAACA+TGG - chr6_1:3557842-3557861 Msa0869420:intron 45.0%
TGTGTGCATAGCTCTCCAAA+AGG + chr6_1:3557875-3557894 None:intergenic 45.0%
! CAAGCATGTTGCTTGTGGAT+TGG + chr6_1:3557928-3557947 None:intergenic 45.0%
TCCACAAGCAACATGCTTGA+TGG - chr6_1:3557929-3557948 Msa0869420:intron 45.0%
! TCCATCAAGCATGTTGCTTG+TGG + chr6_1:3557933-3557952 None:intergenic 45.0%
TACCTACCCATTTGTGAGAG+AGG - chr6_1:3558448-3558467 Msa0869420:intron 45.0%
ACCTACCCATTTGTGAGAGA+GGG - chr6_1:3558449-3558468 Msa0869420:intron 45.0%
CCAATCCCTCTCTCACAAAT+GGG + chr6_1:3558457-3558476 None:intergenic 45.0%
ACCAATCCCTCTCTCACAAA+TGG + chr6_1:3558458-3558477 None:intergenic 45.0%
!! GAGCTTTGGGGACTTGAATT+TGG - chr6_1:3558533-3558552 Msa0869420:intron 45.0%
TAGCTTCCAATGTAGAACCG+TGG + chr6_1:3558868-3558887 None:intergenic 45.0%
!! TCTGCCAGTTTGCTAGCTTA+TGG + chr6_1:3559133-3559152 None:intergenic 45.0%
!!! TTTTTTCTAATAAAAAAATT+TGG + chr6_1:3555155-3555174 None:intergenic 5.0%
!!! ATTTTTTATATAATTCTAAT+AGG + chr6_1:3555684-3555703 None:intergenic 5.0%
!!! TTACTTTTATAAAAAATAAA+GGG + chr6_1:3558200-3558219 None:intergenic 5.0%
!!! TTTACTTTTATAAAAAATAA+AGG + chr6_1:3558201-3558220 None:intergenic 5.0%
GGCAATCCAAAGGGACCTTA+AGG - chr6_1:3554066-3554085 Msa0869420:three_prime_UTR 50.0%
TGGGGATACCCAATTGGTCA+TGG - chr6_1:3554206-3554225 Msa0869420:three_prime_UTR 50.0%
GGAACAACAGCATCAGCTGA+TGG - chr6_1:3555990-3556009 Msa0869420:intron 50.0%
!! CTCTCTGAGGCTTCAGATGT+TGG + chr6_1:3556020-3556039 None:intergenic 50.0%
! CAACATCTGAAGCCTCAGAG+AGG - chr6_1:3556018-3556037 Msa0869420:intron 50.0%
GCCTCAGAGAGGATCAAAAC+TGG - chr6_1:3556029-3556048 Msa0869420:intron 50.0%
ATAGTCATTGCATACCGGGG+GGG + chr6_1:3556228-3556247 None:intergenic 50.0%
CATGTGCTAGATTTCCAGCC+AGG - chr6_1:3556646-3556665 Msa0869420:intron 50.0%
CTGACCACAAAAGCTTCACC+TGG + chr6_1:3556667-3556686 None:intergenic 50.0%
CATGGTTCCACCATATGACC+AGG - chr6_1:3556699-3556718 Msa0869420:intron 50.0%
!! TGTCTCCACCGACTCAAACA+CGG - chr6_1:3556767-3556786 Msa0869420:intron 50.0%
GTCATTGGACACAGTGCTTG+TGG - chr6_1:3557298-3557317 Msa0869420:intron 50.0%
ATTGGACACAGTGCTTGTGG+TGG - chr6_1:3557301-3557320 Msa0869420:intron 50.0%
GTGGAGTAGGCTCCATCAAA+TGG + chr6_1:3557349-3557368 None:intergenic 50.0%
GTGCCACCTCTTATGGAACT+TGG - chr6_1:3557410-3557429 Msa0869420:intron 50.0%
ACCTGCAAAGGCAAAGGTGA+AGG - chr6_1:3557832-3557851 Msa0869420:intron 50.0%
GCTATGCACACACTGTGAGA+AGG - chr6_1:3557883-3557902 Msa0869420:intron 50.0%
TCCCTCTCTCACAAATGGGT+AGG + chr6_1:3558453-3558472 None:intergenic 50.0%
CCCATTTGTGAGAGAGGGAT+TGG - chr6_1:3558454-3558473 Msa0869420:intron 50.0%
ATGTGGCCACGGTTCTACAT+TGG - chr6_1:3558859-3558878 Msa0869420:CDS 50.0%
GTCGTGTGTCTGCAATGAAG+AGG - chr6_1:3558905-3558924 Msa0869420:CDS 50.0%
CCACAAAAGCTTCACCTGGC+TGG + chr6_1:3556663-3556682 None:intergenic 55.0%
! CCAGCCAGGTGAAGCTTTTG+TGG - chr6_1:3556660-3556679 Msa0869420:intron 55.0%
GCCTTCACCTTTGCCTTTGC+AGG + chr6_1:3557836-3557855 None:intergenic 55.0%
CGTGTCCGTGTTTGAGTCGG+TGG + chr6_1:3556775-3556794 None:intergenic 60.0%
CATTGCATACCGGGGGGGCT+TGG + chr6_1:3556223-3556242 None:intergenic 65.0%
AGCCAAAGGCCAAGCCCCCC+CGG - chr6_1:3556211-3556230 Msa0869420:intron 70.0%
! TACCGGGGGGGCTTGGCCTT+TGG + chr6_1:3556216-3556235 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 3554001 3559212 3554001 ID=Msa0869420;Name=Msa0869420
chr6_1 mRNA 3554001 3559212 3554001 ID=Msa0869420-mRNA-1;Parent=Msa0869420;Name=Msa0869420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=279|1|1|1|0.88|0.8|10|420|329
chr6_1 exon 3554001 3554361 3554001 ID=Msa0869420-mRNA-1:exon:1086;Parent=Msa0869420-mRNA-1
chr6_1 exon 3554574 3554797 3554574 ID=Msa0869420-mRNA-1:exon:1085;Parent=Msa0869420-mRNA-1
chr6_1 exon 3555309 3555414 3555309 ID=Msa0869420-mRNA-1:exon:1084;Parent=Msa0869420-mRNA-1
chr6_1 exon 3555845 3555930 3555845 ID=Msa0869420-mRNA-1:exon:1083;Parent=Msa0869420-mRNA-1
chr6_1 exon 3556173 3556226 3556173 ID=Msa0869420-mRNA-1:exon:1082;Parent=Msa0869420-mRNA-1
chr6_1 exon 3556493 3556609 3556493 ID=Msa0869420-mRNA-1:exon:1081;Parent=Msa0869420-mRNA-1
chr6_1 exon 3556981 3557029 3556981 ID=Msa0869420-mRNA-1:exon:1080;Parent=Msa0869420-mRNA-1
chr6_1 exon 3557132 3557284 3557132 ID=Msa0869420-mRNA-1:exon:1079;Parent=Msa0869420-mRNA-1
chr6_1 exon 3557553 3557611 3557553 ID=Msa0869420-mRNA-1:exon:1078;Parent=Msa0869420-mRNA-1
chr6_1 exon 3558733 3559212 3558733 ID=Msa0869420-mRNA-1:exon:1077;Parent=Msa0869420-mRNA-1
chr6_1 five_prime_UTR 3558934 3559212 3558934 ID=Msa0869420-mRNA-1:five_prime_utr;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3558733 3558933 3558733 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3557553 3557611 3557553 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3557132 3557284 3557132 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3556981 3557029 3556981 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3556493 3556609 3556493 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3556173 3556226 3556173 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3555845 3555930 3555845 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3555309 3555414 3555309 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 CDS 3554633 3554797 3554633 ID=Msa0869420-mRNA-1:cds;Parent=Msa0869420-mRNA-1
chr6_1 three_prime_UTR 3554574 3554632 3554574 ID=Msa0869420-mRNA-1:three_prime_utr;Parent=Msa0869420-mRNA-1
chr6_1 three_prime_UTR 3554001 3554361 3554001 ID=Msa0869420-mRNA-1:three_prime_utr;Parent=Msa0869420-mRNA-1
Gene Sequence

>Msa0869420

ATGTCTACCTCTTCCATAAACGGCTTTAGTCTCTCTTCTTTGTCCCCTACCAAAACTTCTATTAAAAAAGTTACATTGAGACCTATTGTTTCTGCATCTCTTAACTCTTCTTCTTCCTCTTCCACTTCTAACTTCCCTTCTCTTATTCAAGACAAGCCTGTTTTTGCTTCCTCTTCTTCTCCTATCATCACCCCAGTTTTGAGAGAAGAAATGGGAAAGGGCTATGATGAGGCTATTGAAGAGCTCCAAAAATTGTTGAGGGAGAAGACTGAATTGAAGGCCACAGCAGCTGAAAAAGTTGAGCAAATTACAGCTCAGCTAGGAACAACAGCATCAGCTGATGGTGTTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCCTTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTAGCCAAAGGCCAAGCCCCCCCGTTTATGGTCTTTGCATGCTCAGACTCTAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGTGAAGCTTTTGTGGTCAGAAATGTTGCTAACATGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGATCTGCCATTGAGTATGCTGTTCTTCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTTCCATTTGATGGAGCCTACTCCACTGATTTCATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAGGCAAAACATGGAGATGCACCTTTTGGAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCTCTTGGAAACCTTCTTACCTACCCATTTGTGAGAGAGGGATTGGTGAACAAAACATTGGCACTAAAAGGAGGATACTATGACTTTGTGAAAGGATCTTTTGAGCTTTGGGGACTTGAATTTGGCCTTTCTTCAACTTTCTCCGTATGA

Protein sequence

>Msa0869420

MSTSSINGFSLSSLSPTKTSIKKVTLRPIVSASLNSSSSSSTSNFPSLIQDKPVFASSSSPIITPVLREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTASADGVPTSEASERIKTGFLHFKKEKYDKNPALYGELAKGQAPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQAKYAGTGSAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGAYSTDFIEEWVKIGLPAKAKVKAKHGDAPFGELCTHCEKEAVNVSLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV*