Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263710 | XP_013465342.1 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 1.60e-103 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263710 | sp|Q9FJH9|LPAH1_ARATH | 52.976 | 168 | 57 | 5 | 4 | 158 | 6 | 164 | 2.42e-42 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263710 | A0A072VCA1 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 7.67e-104 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0263710 | 0.813991 | 1.933998e-51 | -8.615850e-47 |
| Msa0010770 | Msa0263710 | 0.806319 | 8.716440e-50 | -8.615850e-47 |
| Msa0039250 | Msa0263710 | 0.805771 | 1.136203e-49 | -8.615850e-47 |
| Msa0041690 | Msa0263710 | 0.846764 | 1.769574e-59 | -8.615850e-47 |
| Msa0047640 | Msa0263710 | 0.825514 | 4.496189e-54 | -8.615850e-47 |
| Msa0054530 | Msa0263710 | 0.811603 | 6.446029e-51 | -8.615850e-47 |
| Msa0054820 | Msa0263710 | 0.822064 | 2.893070e-53 | -8.615850e-47 |
| Msa0064920 | Msa0263710 | 0.815945 | 7.126844e-52 | -8.615850e-47 |
| Msa0089980 | Msa0263710 | 0.826784 | 2.242825e-54 | -8.615850e-47 |
| Msa0090010 | Msa0263710 | 0.821463 | 3.983237e-53 | -8.615850e-47 |
| Msa0090660 | Msa0263710 | 0.804391 | 2.209421e-49 | -8.615850e-47 |
| Msa0100160 | Msa0263710 | 0.809125 | 2.208043e-50 | -8.615850e-47 |
| Msa0106620 | Msa0263710 | 0.816709 | 4.808662e-52 | -8.615850e-47 |
| Msa0116790 | Msa0263710 | 0.813993 | 1.931480e-51 | -8.615850e-47 |
| Msa0133720 | Msa0263710 | 0.816037 | 6.798628e-52 | -8.615850e-47 |
| Msa0133820 | Msa0263710 | 0.824619 | 7.316652e-54 | -8.615850e-47 |
| Msa0138210 | Msa0263710 | 0.804997 | 1.650796e-49 | -8.615850e-47 |
| Msa0143850 | Msa0263710 | 0.811172 | 7.996378e-51 | -8.615850e-47 |
| Msa0183420 | Msa0263710 | 0.818838 | 1.590765e-52 | -8.615850e-47 |
| Msa0236770 | Msa0263710 | 0.805124 | 1.552843e-49 | -8.615850e-47 |
| Msa0241830 | Msa0263710 | 0.802104 | 6.573907e-49 | -8.615850e-47 |
| Msa0263710 | Msa0322900 | 0.808043 | 3.758937e-50 | -8.615850e-47 |
| Msa0263710 | Msa0347990 | 0.808252 | 3.393644e-50 | -8.615850e-47 |
| Msa0263710 | Msa0363060 | 0.813251 | 2.813099e-51 | -8.615850e-47 |
| Msa0263710 | Msa0379610 | 0.800123 | 1.670505e-48 | -8.615850e-47 |
| Msa0263710 | Msa0395980 | 0.803545 | 3.312886e-49 | -8.615850e-47 |
| Msa0263710 | Msa0411410 | 0.800170 | 1.634277e-48 | -8.615850e-47 |
| Msa0263710 | Msa0423840 | 0.841650 | 4.177762e-58 | -8.615850e-47 |
| Msa0263710 | Msa0432170 | 0.812544 | 4.019586e-51 | -8.615850e-47 |
| Msa0263710 | Msa0440510 | 0.800946 | 1.134992e-48 | -8.615850e-47 |
| Msa0263710 | Msa0473330 | 0.832438 | 9.455406e-56 | -8.615850e-47 |
| Msa0263710 | Msa0480780 | 0.810514 | 1.109965e-50 | -8.615850e-47 |
| Msa0263710 | Msa0515710 | 0.804016 | 2.644346e-49 | -8.615850e-47 |
| Msa0263710 | Msa0531250 | 0.824636 | 7.248678e-54 | -8.615850e-47 |
| Msa0263710 | Msa0544730 | 0.823032 | 1.722701e-53 | -8.615850e-47 |
| Msa0263710 | Msa0576680 | 0.826353 | 2.841740e-54 | -8.615850e-47 |
| Msa0263710 | Msa0583500 | 0.803223 | 3.862877e-49 | -8.615850e-47 |
| Msa0263710 | Msa0588090 | 0.812645 | 3.819611e-51 | -8.615850e-47 |
| Msa0263710 | Msa0588120 | 0.800052 | 1.727117e-48 | -8.615850e-47 |
| Msa0263710 | Msa0597770 | 0.826849 | 2.164026e-54 | -8.615850e-47 |
| Msa0263710 | Msa0608270 | 0.804249 | 2.365239e-49 | -8.615850e-47 |
| Msa0263710 | Msa0624680 | 0.804155 | 2.473813e-49 | -8.615850e-47 |
| Msa0263710 | Msa0626270 | 0.830966 | 2.180204e-55 | -8.615850e-47 |
| Msa0263710 | Msa0626460 | 0.808553 | 2.927517e-50 | -8.615850e-47 |
| Msa0263710 | Msa0628420 | 0.816393 | 5.658589e-52 | -8.615850e-47 |
| Msa0263710 | Msa0628500 | 0.802703 | 4.947817e-49 | -8.615850e-47 |
| Msa0263710 | Msa0648830 | 0.809341 | 1.985233e-50 | -8.615850e-47 |
| Msa0263710 | Msa0652690 | 0.809380 | 1.947235e-50 | -8.615850e-47 |
| Msa0263710 | Msa0664540 | 0.817337 | 3.475108e-52 | -8.615850e-47 |
| Msa0263710 | Msa0679100 | 0.807774 | 4.289816e-50 | -8.615850e-47 |
| Msa0263710 | Msa0689760 | 0.840308 | 9.404293e-58 | -8.615850e-47 |
| Msa0263710 | Msa0691340 | 0.804697 | 1.907252e-49 | -8.615850e-47 |
| Msa0263710 | Msa0698100 | 0.826476 | 2.656104e-54 | -8.615850e-47 |
| Msa0263710 | Msa0716860 | 0.829356 | 5.388376e-55 | -8.615850e-47 |
| Msa0263710 | Msa0749400 | 0.803823 | 2.900315e-49 | -8.615850e-47 |
| Msa0263710 | Msa0789560 | 0.825662 | 4.148159e-54 | -8.615850e-47 |
| Msa0263710 | Msa0905590 | 0.801758 | 7.739587e-49 | -8.615850e-47 |
| Msa0263710 | Msa0937430 | 0.825632 | 4.217263e-54 | -8.615850e-47 |
| Msa0263710 | Msa0945240 | 0.814945 | 1.189359e-51 | -8.615850e-47 |
| Msa0263710 | Msa0969330 | 0.812750 | 3.622439e-51 | -8.615850e-47 |
| Msa0263710 | Msa1010070 | 0.809102 | 2.233049e-50 | -8.615850e-47 |
| Msa0263710 | Msa1072600 | 0.821302 | 4.340474e-53 | -8.615850e-47 |
| Msa0263710 | Msa1088410 | 0.809537 | 1.802070e-50 | -8.615850e-47 |
| Msa0263710 | Msa1095790 | 0.815129 | 1.083074e-51 | -8.615850e-47 |
| Msa0263710 | Msa1098890 | 0.824104 | 9.668092e-54 | -8.615850e-47 |
| Msa0263710 | Msa1127540 | 0.804536 | 2.060690e-49 | -8.615850e-47 |
| Msa0263710 | Msa1201640 | 0.821034 | 5.002404e-53 | -8.615850e-47 |
| Msa0263710 | Msa1211340 | 0.801451 | 8.947873e-49 | -8.615850e-47 |
| Msa0263710 | Msa1254620 | 0.816792 | 4.606009e-52 | -8.615850e-47 |
| Msa0263710 | Msa1299330 | 0.802533 | 5.362151e-49 | -8.615850e-47 |
| Msa0263710 | Msa1320820 | 0.802265 | 6.089314e-49 | -8.615850e-47 |
| Msa0263710 | Msa1329450 | 0.801204 | 1.005414e-48 | -8.615850e-47 |
| Msa0263710 | Msa1344310 | 0.831608 | 1.515737e-55 | -8.615850e-47 |
| Msa0263710 | Msa1359560 | 0.807452 | 5.020252e-50 | -8.615850e-47 |
| Msa0263710 | Msa1364430 | 0.805097 | 1.573129e-49 | -8.615850e-47 |
| Msa0263710 | Msa1365350 | 0.808515 | 2.982482e-50 | -8.615850e-47 |
| Msa0263710 | Msa1393820 | 0.839017 | 2.037873e-57 | -8.615850e-47 |
| Msa0263710 | Msa1409950 | 0.817589 | 3.049846e-52 | -8.615850e-47 |
| Msa0263710 | Msa1411950 | 0.814315 | 1.639880e-51 | -8.615850e-47 |
| Msa0263710 | Msa1420250 | 0.836204 | 1.073427e-56 | -8.615850e-47 |
| Msa0263710 | Msa1443310 | 0.804504 | 2.093244e-49 | -8.615850e-47 |
| Msa0263710 | Msa1450720 | 0.800814 | 1.208111e-48 | -8.615850e-47 |
| Msa0263710 | Msa1463010 | 0.813221 | 2.857072e-51 | -8.615850e-47 |
| Msa0263710 | Msa1467000 | 0.834062 | 3.724779e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263710 | MtrunA17_Chr2g0327141 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 1.48e-107 | 322 |
| Msa0263710 | MtrunA17_Chr4g0028591 | 56.522 | 161 | 42 | 3 | 2 | 158 | 21 | 157 | 1.79e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263710 | AT5G60760.1 | 52.976 | 168 | 57 | 5 | 4 | 158 | 6 | 164 | 2.46e-43 | 152 |
| Msa0263710 | AT3G45090.1 | 56.329 | 158 | 56 | 4 | 2 | 158 | 5 | 150 | 7.36e-42 | 148 |
| Msa0263710 | AT3G45090.2 | 50.000 | 110 | 42 | 4 | 50 | 158 | 34 | 131 | 1.03e-19 | 85.1 |
Find 43 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGTTAGGGTTAGGGATT+TGG | 0.229787 | 2_2:+63342474 | None:intergenic |
| ACAGAGTACACTTCAGCTTA+TGG | 0.232090 | 2_2:-63342199 | Msa0263710:CDS |
| GAGAGAGAGAGTTAGGGATT+TGG | 0.268610 | 2_2:+63342433 | None:intergenic |
| CCTGAATGAGAGAGAGAGTT+AGG | 0.278089 | 2_2:+63342426 | None:intergenic |
| CCTAACTCTCTCTCTCATTC+AGG | 0.296440 | 2_2:-63342426 | Msa0263710:intron |
| TGCCATTTGAGTTGTATAAA+AGG | 0.310449 | 2_2:-63339907 | Msa0263710:CDS |
| AGAGAAAACGGTTAGGGTTA+GGG | 0.315957 | 2_2:+63342468 | None:intergenic |
| GAGAGAAAACGGTTAGGGTT+AGG | 0.318317 | 2_2:+63342467 | None:intergenic |
| CAGAGTACACTTCAGCTTAT+GGG | 0.327450 | 2_2:-63342198 | Msa0263710:CDS |
| ATCAAGTCTGCTCTCTGGTT+TGG | 0.368718 | 2_2:+63339806 | None:intergenic |
| CAGACTTGATGCTAGCTTGC+AGG | 0.370653 | 2_2:-63339793 | None:intergenic |
| AGATATCGTCTGTGATGTTC+TGG | 0.377775 | 2_2:-63339849 | Msa0263710:CDS |
| AGAGAGTTAGGGATTTGGAT+TGG | 0.384967 | 2_2:+63342438 | None:intergenic |
| TAAAGCTCGTCATGCTTTCA+AGG | 0.391567 | 2_2:-63342172 | Msa0263710:intron |
| GGCTGAGAAAATATTGTATA+TGG | 0.395894 | 2_2:-63342292 | Msa0263710:CDS |
| GGCGTACAACTGTATTTGTT+AGG | 0.401307 | 2_2:-63339886 | Msa0263710:CDS |
| TAGGGATTTGGATCCGTCAT+TGG | 0.412038 | 2_2:+63342486 | None:intergenic |
| GATCTTTCCTTGACAGTAAG+TGG | 0.418706 | 2_2:+63339945 | None:intergenic |
| TGAAGTGTACTCTGTAAAAC+AGG | 0.444692 | 2_2:+63342207 | None:intergenic |
| TCAGGTTTCGATGCTTCTAA+AGG | 0.457018 | 2_2:-63340028 | Msa0263710:CDS |
| GTAAAACAGGACGCGTATAA+CGG | 0.489770 | 2_2:+63342220 | None:intergenic |
| TCAGAGAGAGAAAACGGTTA+GGG | 0.501850 | 2_2:+63342462 | None:intergenic |
| CTGAATGAGAGAGAGAGTTA+GGG | 0.510250 | 2_2:+63342427 | None:intergenic |
| CTAGCATCAAGTCTGCTCTC+TGG | 0.512934 | 2_2:+63339801 | None:intergenic |
| ATTGGATCAGAGAGAGAAAA+CGG | 0.520551 | 2_2:+63342456 | None:intergenic |
| ATCAGAGAGAGAAAACGGTT+AGG | 0.523578 | 2_2:+63342461 | None:intergenic |
| TTACTGTCAAGGAAAGATCA+TGG | 0.542320 | 2_2:-63339941 | Msa0263710:CDS |
| ACTGATGCTTTCAAGTCTGA+AGG | 0.554152 | 2_2:-63340061 | Msa0263710:CDS |
| CTTCTTATCAGATCAGCAGA+AGG | 0.557472 | 2_2:-63340114 | Msa0263710:intron |
| GTACAACTGTATTTGTTAGG+AGG | 0.561227 | 2_2:-63339883 | Msa0263710:CDS |
| GAAAATATTGTATATGGTGG+TGG | 0.566115 | 2_2:-63342286 | Msa0263710:CDS |
| TGATGAAAGCGTGAAGTTGA+AGG | 0.570891 | 2_2:-63342262 | Msa0263710:CDS |
| GAAGTTGAAGGAAAATGAGA+AGG | 0.573611 | 2_2:-63342250 | Msa0263710:CDS |
| TACAACTGTATTTGTTAGGA+GGG | 0.576345 | 2_2:-63339882 | Msa0263710:CDS |
| TTCTTATCAGATCAGCAGAA+GGG | 0.591392 | 2_2:-63340113 | Msa0263710:intron |
| TGCTCGAGGAAAACAGATGT+AGG | 0.596468 | 2_2:-63339971 | Msa0263710:CDS |
| AGGAAGCTTCTGCTTGCTCG+AGG | 0.602193 | 2_2:-63339985 | Msa0263710:CDS |
| TCTGGCTGAGTACAAATATG+TGG | 0.604842 | 2_2:-63339831 | Msa0263710:CDS |
| GGATCCGTCATTGGAAAATG+CGG | 0.610335 | 2_2:+63342495 | None:intergenic |
| AACAGGACGCGTATAACGGA+AGG | 0.623273 | 2_2:+63342224 | None:intergenic |
| TAGGCAACCACTTACTGTCA+AGG | 0.625086 | 2_2:-63339952 | Msa0263710:CDS |
| TGAGAAAATATTGTATATGG+TGG | 0.644543 | 2_2:-63342289 | Msa0263710:CDS |
| CTGGCTGAGTACAAATATGT+GGG | 0.669090 | 2_2:-63339830 | Msa0263710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAATTTGTTGATTTAT+TGG | - | chr2_2:63340320-63340339 | Msa0263710:intron | 15.0% |
| !! | TGATCATAAAATAAACAAAA+CGG | + | chr2_2:63340974-63340993 | None:intergenic | 15.0% |
| !!! | AATGAAATGCTTATATTTTT+TGG | - | chr2_2:63341704-63341723 | Msa0263710:intron | 15.0% |
| !!! | ATGAAATGCTTATATTTTTT+GGG | - | chr2_2:63341705-63341724 | Msa0263710:intron | 15.0% |
| !! | TTTATTCATTGATAGAAGAT+CGG | - | chr2_2:63340287-63340306 | Msa0263710:intron | 20.0% |
| !!! | ATCTATCATTAGGTATTTTT+CGG | - | chr2_2:63340526-63340545 | Msa0263710:intron | 20.0% |
| !! | TTAACAAAACAGAAAAAGAA+GGG | + | chr2_2:63341127-63341146 | None:intergenic | 20.0% |
| !! | TTTAACAAAACAGAAAAAGA+AGG | + | chr2_2:63341128-63341147 | None:intergenic | 20.0% |
| !! | TGATAAAATCCAATTAATTG+TGG | - | chr2_2:63341372-63341391 | Msa0263710:intron | 20.0% |
| !!! | AAAGTCATTTTTTAGTAACA+CGG | + | chr2_2:63342212-63342231 | None:intergenic | 20.0% |
| ! | CAACAATACAACAAGAAATT+CGG | + | chr2_2:63340006-63340025 | None:intergenic | 25.0% |
| ! | TGAGAAAATATTGTATATGG+TGG | - | chr2_2:63340058-63340077 | Msa0263710:CDS | 25.0% |
| !! | GTCTATTTTCAATTTCTTTG+TGG | - | chr2_2:63340242-63340261 | Msa0263710:intron | 25.0% |
| ! | TTCTCAAATTATTATCAGTG+TGG | + | chr2_2:63340410-63340429 | None:intergenic | 25.0% |
| ! | GTATAGAGTTATCTATCATT+AGG | - | chr2_2:63340516-63340535 | Msa0263710:intron | 25.0% |
| !! | TCTATCATTAGGTATTTTTC+GGG | - | chr2_2:63340527-63340546 | Msa0263710:intron | 25.0% |
| ! | AGATAACAAAATAGTTCACA+TGG | + | chr2_2:63340674-63340693 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAGATTGTTT+CGG | - | chr2_2:63340756-63340775 | Msa0263710:intron | 25.0% |
| ! | AATAAGATGTTTATCCAAAC+AGG | - | chr2_2:63340947-63340966 | Msa0263710:intron | 25.0% |
| ! | ATAAGATGTTTATCCAAACA+GGG | - | chr2_2:63340948-63340967 | Msa0263710:intron | 25.0% |
| ! | TTATGATCATAAAACAGAGA+TGG | - | chr2_2:63340985-63341004 | Msa0263710:intron | 25.0% |
| ! | TATGATCATAAAACAGAGAT+GGG | - | chr2_2:63340986-63341005 | Msa0263710:intron | 25.0% |
| ! | TTTAACATGCACATAAACTT+TGG | - | chr2_2:63341009-63341028 | Msa0263710:intron | 25.0% |
| ! | ACACCAAAAAATGAAGAAAA+AGG | + | chr2_2:63341035-63341054 | None:intergenic | 25.0% |
| ! | TTTAAGTGAAAGAATAAGTG+AGG | - | chr2_2:63341065-63341084 | Msa0263710:intron | 25.0% |
| !!! | TCTGTTTTGTTAAACTTCAA+TGG | - | chr2_2:63341134-63341153 | Msa0263710:intron | 25.0% |
| ! | ATCAATCAATGTTCAAAAGA+AGG | + | chr2_2:63341281-63341300 | None:intergenic | 25.0% |
| !!! | TTTTGAACATTGATTGATTG+AGG | - | chr2_2:63341283-63341302 | Msa0263710:intron | 25.0% |
| ! | AATTTGTAACCAACCTAATA+GGG | + | chr2_2:63341344-63341363 | None:intergenic | 25.0% |
| !! | TAATTTGTAACCAACCTAAT+AGG | + | chr2_2:63341345-63341364 | None:intergenic | 25.0% |
| ! | CAAGATATACCACAATTAAT+TGG | + | chr2_2:63341384-63341403 | None:intergenic | 25.0% |
| ! | ATTGTGGTATATCTTGATTT+AGG | - | chr2_2:63341388-63341407 | Msa0263710:intron | 25.0% |
| ! | GTAGTAATACATGTAATACA+TGG | - | chr2_2:63341451-63341470 | Msa0263710:intron | 25.0% |
| ! | CTAGAAAAAGTTTGTATTCT+AGG | + | chr2_2:63341637-63341656 | None:intergenic | 25.0% |
| !!! | AAATGCTTATATTTTTTGGG+CGG | - | chr2_2:63341708-63341727 | Msa0263710:intron | 25.0% |
| ! | GTCAATTTATTAGAAATACG+AGG | + | chr2_2:63342025-63342044 | None:intergenic | 25.0% |
| ! | GTAATGACTACTGATATTAA+TGG | + | chr2_2:63342109-63342128 | None:intergenic | 25.0% |
| ! | GTTTCAAACATTCAATAAAG+AGG | + | chr2_2:63342182-63342201 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTTTAGTAACAC+GGG | + | chr2_2:63342211-63342230 | None:intergenic | 25.0% |
| ! | AAATGTGAAAAAAGATTGTC+AGG | - | chr2_2:63342342-63342361 | Msa0263710:intron | 25.0% |
| !!! | ATGCTGATGATTGTTGTTTT+TGG | + | chr2_2:63339822-63339841 | None:intergenic | 30.0% |
| AAGATCATTGCAAATTGCAA+TGG | + | chr2_2:63339970-63339989 | None:intergenic | 30.0% | |
| ! | TCTTGTTGTATTGTTGAATC+TGG | - | chr2_2:63340010-63340029 | Msa0263710:CDS | 30.0% |
| GGCTGAGAAAATATTGTATA+TGG | - | chr2_2:63340055-63340074 | Msa0263710:CDS | 30.0% | |
| GAAAATATTGTATATGGTGG+TGG | - | chr2_2:63340061-63340080 | Msa0263710:CDS | 30.0% | |
| !! | GTTTTGGACTGTGTTTATTT+TGG | - | chr2_2:63340585-63340604 | Msa0263710:intron | 30.0% |
| !! | ATTTTGTTATCTTGTGCCTA+TGG | - | chr2_2:63340682-63340701 | Msa0263710:intron | 30.0% |
| !! | TGGCCTTTTTCTTCATTTTT+TGG | - | chr2_2:63341029-63341048 | Msa0263710:intron | 30.0% |
| TTAAACTTCAATGGACCATA+GGG | - | chr2_2:63341143-63341162 | Msa0263710:intron | 30.0% | |
| AACAAACAAAATATCCCCTA+TGG | + | chr2_2:63341161-63341180 | None:intergenic | 30.0% | |
| TGAGGTCATTATTGTTAAAG+AGG | - | chr2_2:63341301-63341320 | Msa0263710:intron | 30.0% | |
| GAGGTCATTATTGTTAAAGA+GGG | - | chr2_2:63341302-63341321 | Msa0263710:intron | 30.0% | |
| TATTGTTAAAGAGGGAATTG+AGG | - | chr2_2:63341310-63341329 | Msa0263710:intron | 30.0% | |
| TACATTGAACCGCATATAAT+TGG | + | chr2_2:63341481-63341500 | None:intergenic | 30.0% | |
| AATTATATGCGGTTCAATGT+AGG | - | chr2_2:63341480-63341499 | Msa0263710:intron | 30.0% | |
| !! | GAATACAAACTTTTTCTAGC+CGG | - | chr2_2:63341638-63341657 | Msa0263710:intron | 30.0% |
| !! | AATACAAACTTTTTCTAGCC+GGG | - | chr2_2:63341639-63341658 | Msa0263710:intron | 30.0% |
| !! | TTTATTTGTTGGTAGTTCCA+TGG | + | chr2_2:63341763-63341782 | None:intergenic | 30.0% |
| CAGTATAAATATAGTGCTGT+GGG | + | chr2_2:63341882-63341901 | None:intergenic | 30.0% | |
| TGAATGACCACTGATATTAA+TGG | + | chr2_2:63341933-63341952 | None:intergenic | 30.0% | |
| AAATAGCATGATCTGATAAG+AGG | + | chr2_2:63342052-63342071 | None:intergenic | 30.0% | |
| !!! | AGTCATTTTTTAGTAACACG+GGG | + | chr2_2:63342210-63342229 | None:intergenic | 30.0% |
| !! | TCTGAAGGAATTGTTTTATC+AGG | - | chr2_2:63342301-63342320 | Msa0263710:intron | 30.0% |
| !! | TGCCATTTGAGTTGTATAAA+AGG | - | chr2_2:63342440-63342459 | Msa0263710:five_prime_UTR | 30.0% |
| ! | TACAACTGTATTTGTTAGGA+GGG | - | chr2_2:63342465-63342484 | Msa0263710:five_prime_UTR | 30.0% |
| ! | AAAACCGCATTTTCCAATGA+CGG | - | chr2_2:63339848-63339867 | Msa0263710:CDS | 35.0% |
| ATTGGATCAGAGAGAGAAAA+CGG | + | chr2_2:63339894-63339913 | None:intergenic | 35.0% | |
| GAAGTTGAAGGAAAATGAGA+AGG | - | chr2_2:63340097-63340116 | Msa0263710:CDS | 35.0% | |
| TGAAGTGTACTCTGTAAAAC+AGG | + | chr2_2:63340143-63340162 | None:intergenic | 35.0% | |
| !!! | TGATGTTTTTGTTTCTGCTG+TGG | - | chr2_2:63340563-63340582 | Msa0263710:intron | 35.0% |
| !!! | TTTTGTTTCTGCTGTGGTTT+TGG | - | chr2_2:63340569-63340588 | Msa0263710:intron | 35.0% |
| AACACAACACATAAAAGCCA+AGG | + | chr2_2:63340627-63340646 | None:intergenic | 35.0% | |
| ATGGCTACAATGCTGAATAA+TGG | + | chr2_2:63340655-63340674 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+CGG | + | chr2_2:63340718-63340737 | None:intergenic | 35.0% | |
| ! | GCAGTTTTCATAAGCTATCT+TGG | + | chr2_2:63340847-63340866 | None:intergenic | 35.0% |
| TATAGCACAAGCGATTATCA+TGG | + | chr2_2:63340920-63340939 | None:intergenic | 35.0% | |
| GTTAAACTTCAATGGACCAT+AGG | - | chr2_2:63341142-63341161 | Msa0263710:intron | 35.0% | |
| TAAACTTCAATGGACCATAG+GGG | - | chr2_2:63341144-63341163 | Msa0263710:intron | 35.0% | |
| TGAGGATATGTTTCCCTATT+AGG | - | chr2_2:63341328-63341347 | Msa0263710:intron | 35.0% | |
| GATATGTTTCCCTATTAGGT+TGG | - | chr2_2:63341332-63341351 | Msa0263710:intron | 35.0% | |
| TATTACTACAACTGTGCACT+TGG | + | chr2_2:63341440-63341459 | None:intergenic | 35.0% | |
| TTGAACCGCATATAATTGGT+GGG | + | chr2_2:63341477-63341496 | None:intergenic | 35.0% | |
| ATTGAACCGCATATAATTGG+TGG | + | chr2_2:63341478-63341497 | None:intergenic | 35.0% | |
| !!! | ATTTTTTGGGCGGTATAACA+TGG | - | chr2_2:63341718-63341737 | Msa0263710:intron | 35.0% |
| !! | GGTAGATATAATGGATGTTG+CGG | + | chr2_2:63341836-63341855 | None:intergenic | 35.0% |
| CGGAAACATGGTAGATATAA+TGG | + | chr2_2:63341845-63341864 | None:intergenic | 35.0% | |
| GCAGTATAAATATAGTGCTG+TGG | + | chr2_2:63341883-63341902 | None:intergenic | 35.0% | |
| !! | GCAGAATTTTAGCCATAATC+TGG | - | chr2_2:63341901-63341920 | Msa0263710:intron | 35.0% |
| ATGACCACTGATATTAATGG+CGG | + | chr2_2:63341930-63341949 | None:intergenic | 35.0% | |
| TAATGGCAGATGCAAGATTA+TGG | + | chr2_2:63342092-63342111 | None:intergenic | 35.0% | |
| TTCTTATCAGATCAGCAGAA+GGG | - | chr2_2:63342234-63342253 | Msa0263710:CDS | 35.0% | |
| ! | TTTTTGAACTCACAAGGAGT+GGG | - | chr2_2:63342257-63342276 | Msa0263710:CDS | 35.0% |
| TTACTGTCAAGGAAAGATCA+TGG | - | chr2_2:63342406-63342425 | Msa0263710:intron | 35.0% | |
| ! | CGCCTTTTATACAACTCAAA+TGG | + | chr2_2:63342445-63342464 | None:intergenic | 35.0% |
| ! | GTACAACTGTATTTGTTAGG+AGG | - | chr2_2:63342464-63342483 | Msa0263710:five_prime_UTR | 35.0% |
| AGAGAAAACGGTTAGGGTTA+GGG | + | chr2_2:63339882-63339901 | None:intergenic | 40.0% | |
| TCAGAGAGAGAAAACGGTTA+GGG | + | chr2_2:63339888-63339907 | None:intergenic | 40.0% | |
| ATCAGAGAGAGAAAACGGTT+AGG | + | chr2_2:63339889-63339908 | None:intergenic | 40.0% | |
| AGAGAGTTAGGGATTTGGAT+TGG | + | chr2_2:63339912-63339931 | None:intergenic | 40.0% | |
| CTGAATGAGAGAGAGAGTTA+GGG | + | chr2_2:63339923-63339942 | None:intergenic | 40.0% | |
| ! | TCGTGTTGTTGTTACAGTGA+TGG | - | chr2_2:63340034-63340053 | Msa0263710:CDS | 40.0% |
| ! | TGATGAAAGCGTGAAGTTGA+AGG | - | chr2_2:63340085-63340104 | Msa0263710:CDS | 40.0% |
| GTAAAACAGGACGCGTATAA+CGG | + | chr2_2:63340130-63340149 | None:intergenic | 40.0% | |
| ACAGAGTACACTTCAGCTTA+TGG | - | chr2_2:63340148-63340167 | Msa0263710:intron | 40.0% | |
| CAGAGTACACTTCAGCTTAT+GGG | - | chr2_2:63340149-63340168 | Msa0263710:intron | 40.0% | |
| TAAAGCTCGTCATGCTTTCA+AGG | - | chr2_2:63340175-63340194 | Msa0263710:intron | 40.0% | |
| CATGTATCAGTGTCTTGTGT+CGG | - | chr2_2:63340453-63340472 | Msa0263710:intron | 40.0% | |
| ! | CTTCTGATTGAAGGTGTATC+CGG | + | chr2_2:63340488-63340507 | None:intergenic | 40.0% |
| !!! | TGGACTGTGTTTATTTTGGC+AGG | - | chr2_2:63340589-63340608 | Msa0263710:intron | 40.0% |
| ATAAACAAAACGGCCCTGTT+TGG | + | chr2_2:63340964-63340983 | None:intergenic | 40.0% | |
| ! | AATGTTCAAAAGAAGGCACG+CGG | + | chr2_2:63341274-63341293 | None:intergenic | 40.0% |
| TGTTGTCAAAATTGACGCCA+TGG | - | chr2_2:63341743-63341762 | Msa0263710:intron | 40.0% | |
| TCCACCATTTCATAATGCCA+CGG | + | chr2_2:63341792-63341811 | None:intergenic | 40.0% | |
| ATCTACCATGTTTCCGCTAT+CGG | - | chr2_2:63341849-63341868 | Msa0263710:intron | 40.0% | |
| CTTCTTATCAGATCAGCAGA+AGG | - | chr2_2:63342233-63342252 | Msa0263710:CDS | 40.0% | |
| ! | GAAGGGTTTTTGAACTCACA+AGG | - | chr2_2:63342251-63342270 | Msa0263710:CDS | 40.0% |
| ! | GTTTTTGAACTCACAAGGAG+TGG | - | chr2_2:63342256-63342275 | Msa0263710:CDS | 40.0% |
| ! | ACTGATGCTTTCAAGTCTGA+AGG | - | chr2_2:63342286-63342305 | Msa0263710:CDS | 40.0% |
| TCAGGTTTCGATGCTTCTAA+AGG | - | chr2_2:63342319-63342338 | Msa0263710:intron | 40.0% | |
| GATCTTTCCTTGACAGTAAG+TGG | + | chr2_2:63342405-63342424 | None:intergenic | 40.0% | |
| GGCGTACAACTGTATTTGTT+AGG | - | chr2_2:63342461-63342480 | Msa0263710:five_prime_UTR | 40.0% | |
| AGATATCGTCTGTGATGTTC+TGG | - | chr2_2:63342498-63342517 | Msa0263710:five_prime_UTR | 40.0% | |
| TCTGGCTGAGTACAAATATG+TGG | - | chr2_2:63342516-63342535 | Msa0263710:five_prime_UTR | 40.0% | |
| CTGGCTGAGTACAAATATGT+GGG | - | chr2_2:63342517-63342536 | Msa0263710:five_prime_UTR | 40.0% | |
| GGATCCGTCATTGGAAAATG+CGG | + | chr2_2:63339855-63339874 | None:intergenic | 45.0% | |
| TAGGGATTTGGATCCGTCAT+TGG | + | chr2_2:63339864-63339883 | None:intergenic | 45.0% | |
| AACGGTTAGGGTTAGGGATT+TGG | + | chr2_2:63339876-63339895 | None:intergenic | 45.0% | |
| GAGAGAAAACGGTTAGGGTT+AGG | + | chr2_2:63339883-63339902 | None:intergenic | 45.0% | |
| GAGAGAGAGAGTTAGGGATT+TGG | + | chr2_2:63339917-63339936 | None:intergenic | 45.0% | |
| CCTGAATGAGAGAGAGAGTT+AGG | + | chr2_2:63339924-63339943 | None:intergenic | 45.0% | |
| CCTAACTCTCTCTCTCATTC+AGG | - | chr2_2:63339921-63339940 | Msa0263710:CDS | 45.0% | |
| CCACTGACACTTCTGATTGA+AGG | + | chr2_2:63340497-63340516 | None:intergenic | 45.0% | |
| !! | CCTTCAATCAGAAGTGTCAG+TGG | - | chr2_2:63340494-63340513 | Msa0263710:intron | 45.0% |
| GCAGGAATGCATTTCTTCCT+TGG | - | chr2_2:63340607-63340626 | Msa0263710:intron | 45.0% | |
| TGCCTATGGAGATATTGAGC+CGG | - | chr2_2:63340696-63340715 | Msa0263710:intron | 45.0% | |
| ! | AACCGGCTCAATATCTCCAT+AGG | + | chr2_2:63340701-63340720 | None:intergenic | 45.0% |
| ATGGAGATATTGAGCCGGTT+TGG | - | chr2_2:63340701-63340720 | Msa0263710:intron | 45.0% | |
| !! | GATATTGAGCCGGTTTGGAT+TGG | - | chr2_2:63340706-63340725 | Msa0263710:intron | 45.0% |
| TAGCCACAGCAGTTACTTGA+CGG | + | chr2_2:63341095-63341114 | None:intergenic | 45.0% | |
| CATGGCCCACCAATTATATG+CGG | - | chr2_2:63341469-63341488 | Msa0263710:intron | 45.0% | |
| ! | TCCTTTTTCCAGGACTTACC+TGG | + | chr2_2:63341506-63341525 | None:intergenic | 45.0% |
| ! | TGACTTGGGTAGACCTAGAT+AGG | - | chr2_2:63341536-63341555 | Msa0263710:intron | 45.0% |
| GACTTGGGTAGACCTAGATA+GGG | - | chr2_2:63341537-63341556 | Msa0263710:intron | 45.0% | |
| TACTTCGCCTTTCAGGCTTA+TGG | + | chr2_2:63341603-63341622 | None:intergenic | 45.0% | |
| ATAAGCCTGAAAGGCGAAGT+AGG | - | chr2_2:63341602-63341621 | Msa0263710:intron | 45.0% | |
| AACAACCTACTTCGCCTTTC+AGG | + | chr2_2:63341610-63341629 | None:intergenic | 45.0% | |
| GAAAGGCGAAGTAGGTTGTT+TGG | - | chr2_2:63341610-63341629 | Msa0263710:intron | 45.0% | |
| !! | CAAACTTTTTCTAGCCGGGA+AGG | - | chr2_2:63341643-63341662 | Msa0263710:intron | 45.0% |
| CACGGCAGCAGTTTATTTGT+TGG | + | chr2_2:63341774-63341793 | None:intergenic | 45.0% | |
| CAACAAATAAACTGCTGCCG+TGG | - | chr2_2:63341772-63341791 | Msa0263710:intron | 45.0% | |
| AATATAGTGCTGTGGGCATG+AGG | + | chr2_2:63341875-63341894 | None:intergenic | 45.0% | |
| !! | TAATGGCGGATGCCAGATTA+TGG | + | chr2_2:63341916-63341935 | None:intergenic | 45.0% |
| GCATCCGCCATTAATATCAG+TGG | - | chr2_2:63341923-63341942 | Msa0263710:intron | 45.0% | |
| TGCTCGAGGAAAACAGATGT+AGG | - | chr2_2:63342376-63342395 | Msa0263710:intron | 45.0% | |
| TAGGCAACCACTTACTGTCA+AGG | - | chr2_2:63342395-63342414 | Msa0263710:intron | 45.0% | |
| ATCAAGTCTGCTCTCTGGTT+TGG | + | chr2_2:63342544-63342563 | None:intergenic | 45.0% | |
| ! | AACAGGACGCGTATAACGGA+AGG | + | chr2_2:63340126-63340145 | None:intergenic | 50.0% |
| ! | CTTGTGTCGGTGATGAACAC+CGG | - | chr2_2:63340466-63340485 | Msa0263710:intron | 50.0% |
| ACACCGTCAAGTAACTGCTG+TGG | - | chr2_2:63341089-63341108 | Msa0263710:intron | 50.0% | |
| GTGCACTTGGAAGAGATGTC+AGG | + | chr2_2:63341427-63341446 | None:intergenic | 50.0% | |
| TATGCGGTTCAATGTAGGCC+AGG | - | chr2_2:63341485-63341504 | Msa0263710:intron | 50.0% | |
| AATGTAGGCCAGGTAAGTCC+TGG | - | chr2_2:63341495-63341514 | Msa0263710:intron | 50.0% | |
| GCCAGGTAAGTCCTGGAAAA+AGG | - | chr2_2:63341502-63341521 | Msa0263710:intron | 50.0% | |
| TCCTGGAAAAAGGACAGCCA+AGG | - | chr2_2:63341512-63341531 | Msa0263710:intron | 50.0% | |
| ! | ACCTTGGCTGTCCTTTTTCC+AGG | + | chr2_2:63341516-63341535 | None:intergenic | 50.0% |
| AAGGACAGCCAAGGTTGACT+TGG | - | chr2_2:63341521-63341540 | Msa0263710:intron | 50.0% | |
| ! | AGGACAGCCAAGGTTGACTT+GGG | - | chr2_2:63341522-63341541 | Msa0263710:intron | 50.0% |
| AGGTCTACCCAAGTCAACCT+TGG | + | chr2_2:63341532-63341551 | None:intergenic | 50.0% | |
| TCGAGCTATGTGCCCTATCT+AGG | + | chr2_2:63341552-63341571 | None:intergenic | 50.0% | |
| ! | CTTTCAGGCTTATGGCTTGG+GGG | + | chr2_2:63341595-63341614 | None:intergenic | 50.0% |
| CCTTTCAGGCTTATGGCTTG+GGG | + | chr2_2:63341596-63341615 | None:intergenic | 50.0% | |
| GCCTTTCAGGCTTATGGCTT+GGG | + | chr2_2:63341597-63341616 | None:intergenic | 50.0% | |
| CTAGTGAAGTTGCACCTTCC+CGG | + | chr2_2:63341660-63341679 | None:intergenic | 50.0% | |
| GCTGCCGTGGCATTATGAAA+TGG | - | chr2_2:63341785-63341804 | Msa0263710:intron | 50.0% | |
| GCCGTGGCATTATGAAATGG+TGG | - | chr2_2:63341788-63341807 | Msa0263710:intron | 50.0% | |
| !! | GATTCTGTGCCGATTGCAAC+AGG | - | chr2_2:63341810-63341829 | Msa0263710:intron | 50.0% |
| ATGTTGCGGCCTGTTGCAAT+CGG | + | chr2_2:63341822-63341841 | None:intergenic | 50.0% | |
| CTAGCATCAAGTCTGCTCTC+TGG | + | chr2_2:63342549-63342568 | None:intergenic | 50.0% | |
| CCCCAAGCCATAAGCCTGAA+AGG | - | chr2_2:63341593-63341612 | Msa0263710:intron | 55.0% | |
| CGCCTTTCAGGCTTATGGCT+TGG | + | chr2_2:63341598-63341617 | None:intergenic | 55.0% | |
| !! | TGAGGCCGATAGCGGAAACA+TGG | + | chr2_2:63341857-63341876 | None:intergenic | 55.0% |
| AGGAAGCTTCTGCTTGCTCG+AGG | - | chr2_2:63342362-63342381 | Msa0263710:intron | 55.0% | |
| ! | AGGCTTATGGCTTGGGGGCT+GGG | + | chr2_2:63341590-63341609 | None:intergenic | 60.0% |
| TGTGGGCATGAGGCCGATAG+CGG | + | chr2_2:63341865-63341884 | None:intergenic | 60.0% | |
| ! | CAGGCTTATGGCTTGGGGGC+TGG | + | chr2_2:63341591-63341610 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 63339796 | 63342573 | 63339796 | ID=Msa0263710;Name=Msa0263710 |
| chr2_2 | mRNA | 63339796 | 63342573 | 63339796 | ID=Msa0263710-mRNA-1;Parent=Msa0263710;Name=Msa0263710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=149|1|0.66|1|0.5|0|3|0|158 |
| chr2_2 | exon | 63339796 | 63340125 | 63339796 | ID=Msa0263710-mRNA-1:exon:19646;Parent=Msa0263710-mRNA-1 |
| chr2_2 | exon | 63342173 | 63342318 | 63342173 | ID=Msa0263710-mRNA-1:exon:19645;Parent=Msa0263710-mRNA-1 |
| chr2_2 | exon | 63342427 | 63342573 | 63342427 | ID=Msa0263710-mRNA-1:exon:19644;Parent=Msa0263710-mRNA-1 |
| chr2_2 | five_prime_UTR | 63342427 | 63342573 | 63342427 | ID=Msa0263710-mRNA-1:five_prime_utr;Parent=Msa0263710-mRNA-1 |
| chr2_2 | five_prime_UTR | 63342317 | 63342318 | 63342317 | ID=Msa0263710-mRNA-1:five_prime_utr;Parent=Msa0263710-mRNA-1 |
| chr2_2 | CDS | 63342173 | 63342316 | 63342173 | ID=Msa0263710-mRNA-1:cds;Parent=Msa0263710-mRNA-1 |
| chr2_2 | CDS | 63339796 | 63340125 | 63339796 | ID=Msa0263710-mRNA-1:cds;Parent=Msa0263710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
