AlfalfaGEDB | Msa1276190

M. sativa cultivar zhongmu-4 / Msa1276190

KEGG: K12191
GO: GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805
PFAM: PF03357.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276190	XP_013444435.1	97.768	224	5	0	1	224	1	224	3.64e-155	439

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276190	sp\|Q9SKI2\|VPS2A_ARATH	87.556	225	26	2	1	224	2	225	1.91e-124	354

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276190	A0A072TY45	97.768	224	5	0	1	224	1	224	1.74e-155	439

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1276190	-0.817779	2.762957e-52	-8.615850e-47
Msa0004920	Msa1276190	0.808331	3.264874e-50	-8.615850e-47
Msa0012040	Msa1276190	0.816296	5.950716e-52	-8.615850e-47
Msa0032610	Msa1276190	0.811879	5.613062e-51	-8.615850e-47
Msa0043730	Msa1276190	0.805604	1.232029e-49	-8.615850e-47
Msa0047980	Msa1276190	0.809524	1.813805e-50	-8.615850e-47
Msa0050730	Msa1276190	0.807140	5.844538e-50	-8.615850e-47
Msa0050760	Msa1276190	0.803813	2.913823e-49	-8.615850e-47
Msa0057140	Msa1276190	0.809772	1.603645e-50	-8.615850e-47
Msa0071240	Msa1276190	0.807557	4.768948e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276190	MtrunA17_Chr8g0343561	97.768	224	5	0	1	224	1	224	3.35e-159	439
Msa1276190	MtrunA17_Chr2g0300321	85.714	224	31	1	1	224	1	223	2.65e-118	335
Msa1276190	MtrunA17_Chr1g0183621	41.096	219	118	1	4	222	7	214	5.24e-51	164
Msa1276190	MtrunA17_Chr2g0303251	39.732	224	122	3	4	224	3	216	1.26e-43	145
Msa1276190	MtrunA17_Chr7g0261511	45.662	219	108	2	4	222	3	210	5.41e-42	141
Msa1276190	MtrunA17_Chr4g0028231	27.602	221	157	3	4	222	7	226	2.39e-18	80.5
Msa1276190	MtrunA17_Chr2g0330571	25.294	170	115	2	53	222	45	202	3.21e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276190	AT2G06530.1	87.556	225	26	2	1	224	2	225	1.95e-125	354
Msa1276190	AT2G06530.2	88.780	205	21	2	21	224	1	204	1.81e-113	323
Msa1276190	AT1G03950.1	42.922	219	114	3	4	222	3	210	4.34e-53	170
Msa1276190	AT5G44560.1	38.914	221	134	1	4	224	3	222	1.03e-46	154
Msa1276190	AT5G44560.4	41.477	176	103	0	4	179	3	178	5.50e-44	146
Msa1276190	AT5G44560.2	40.000	200	119	1	25	224	4	202	7.23e-43	144
Msa1276190	AT5G44560.3	37.143	140	87	1	4	142	3	142	1.57e-25	97.8
Msa1276190	AT5G22950.1	27.354	223	157	3	4	222	7	228	7.62e-17	76.6
Msa1276190	AT1G17730.1	25.000	196	133	2	27	222	19	200	8.31e-13	65.5

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Find 71 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGTTACTAAAGCAAT+GGG	0.498174	8_3:+10760373	Msa1276190:CDS
AAATACCATTTGTCCTTGTT+TGG	0.313748	8_3:-10759451	None:intergenic
AAATTGAAAGGGAAAGACAA+GGG	0.643400	8_3:+10759382	Msa1276190:CDS
AAGCAATGGGTCAAATGAAT+AGG	0.409703	8_3:+10760386	Msa1276190:CDS
AAGCTTAAATCACAACTTCA+GGG	0.512790	8_3:+10759831	Msa1276190:CDS
AATCAGGTTCTTGATGAGAT+CGG	0.543892	8_3:+10760556	Msa1276190:CDS
AATTTGTTAGGGTGCTGTGA+GGG	0.568995	8_3:+10759758	Msa1276190:intron
ACTTAAATCTACTCAAGCGA+TGG	0.571897	8_3:+10760339	Msa1276190:CDS
ACTTAGATTATAACAGAAAA+TGG	0.267692	8_3:-10761488	None:intergenic
AGACTAGGTTAGATAACCTA+AGG	0.575086	8_3:+10761060	Msa1276190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAATTAATCAACCACCTA+AGG	-	chr8_3:10758952-10758971	None:intergenic	30.0%
AAATTTGAAGAATTACCTGC+GGG	-	chr8_3:10759111-10759130	None:intergenic	30.0%
AAATTGAAAGGGAAAGACAA+GGG	+	chr8_3:10759382-10759401	Msa1276190:CDS	30.0%
ATTAAGAAGAATGCCAAACA+AGG	+	chr8_3:10759438-10759457	Msa1276190:CDS	30.0%
AAATACCATTTGTCCTTGTT+TGG	-	chr8_3:10759454-10759473	None:intergenic	30.0%
CCTAAAAACACTATAATTGC+AGG	-	chr8_3:10759573-10759592	None:intergenic	30.0%
AAGCTTAAATCACAACTTCA+GGG	+	chr8_3:10759831-10759850	Msa1276190:CDS	30.0%
AACTTATCTGCTAAAATCCT+AGG	-	chr8_3:10759951-10759970	None:intergenic	30.0%
TTTCATGCTCTTTCATACTA+TGG	+	chr8_3:10760205-10760224	Msa1276190:intron	30.0%
AAGTGTCTACAATTAATCTC+AGG	-	chr8_3:10760323-10760342	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	10758893	10761506	10758893	ID=Msa1276190;Name=Msa1276190
chr8_3	mRNA	10758893	10761506	10758893	ID=Msa1276190-mRNA-1;Parent=Msa1276190;Name=Msa1276190-mRNA-1;_AED=0.09;_eAED=0.09;_QI=185\|1\|1\|1\|0.8\|0.66\|6\|217\|224
chr8_3	exon	10758893	10759114	10758893	ID=Msa1276190-mRNA-1:exon:4416;Parent=Msa1276190-mRNA-1
chr8_3	exon	10759337	10759467	10759337	ID=Msa1276190-mRNA-1:exon:4417;Parent=Msa1276190-mRNA-1
chr8_3	exon	10759768	10759872	10759768	ID=Msa1276190-mRNA-1:exon:4418;Parent=Msa1276190-mRNA-1
chr8_3	exon	10760337	10760597	10760337	ID=Msa1276190-mRNA-1:exon:4419;Parent=Msa1276190-mRNA-1
chr8_3	exon	10760951	10761185	10760951	ID=Msa1276190-mRNA-1:exon:4420;Parent=Msa1276190-mRNA-1
chr8_3	exon	10761384	10761506	10761384	ID=Msa1276190-mRNA-1:exon:4421;Parent=Msa1276190-mRNA-1
chr8_3	five_prime_UTR	10758893	10759077	10758893	ID=Msa1276190-mRNA-1:five_prime_utr;Parent=Msa1276190-mRNA-1
chr8_3	CDS	10759078	10759114	10759078	ID=Msa1276190-mRNA-1:cds;Parent=Msa1276190-mRNA-1
chr8_3	CDS	10759337	10759467	10759337	ID=Msa1276190-mRNA-1:cds;Parent=Msa1276190-mRNA-1
chr8_3	CDS	10759768	10759872	10759768	ID=Msa1276190-mRNA-1:cds;Parent=Msa1276190-mRNA-1
chr8_3	CDS	10760337	10760597	10760337	ID=Msa1276190-mRNA-1:cds;Parent=Msa1276190-mRNA-1
chr8_3	CDS	10760951	10761091	10760951	ID=Msa1276190-mRNA-1:cds;Parent=Msa1276190-mRNA-1
chr8_3	three_prime_UTR	10761092	10761185	10761092	ID=Msa1276190-mRNA-1:three_prime_utr;Parent=Msa1276190-mRNA-1
chr8_3	three_prime_UTR	10761384	10761506	10761384	ID=Msa1276190-mRNA-1:three_prime_utr;Parent=Msa1276190-mRNA-1

Gene Sequence

>Msa1276190

ATGAGTTTTCTGCTCGGCAGTAGAAAGACTCCCGCAGAGCTTTTGAGGGAGAATAAAAGGATGCTTGATAAGTCTATTAGAGAAATTGAAAGGGAAAGACAAGGGTTGCAGTCTCAAGAAAAGAAATTGATTGTAGAGATTAAGAAGAATGCCAAACAAGGACAAATGGGTGCTGTGAGGGTTATGGCCAAGGATCTTATCAGAACTCGCCATCAGATTGAAAAGTTTTACAAGCTTAAATCACAACTTCAGGGTGTTGCTTTGAGAATTCAGACACTTAAATCTACTCAAGCGATGGGGGACGCTATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAATCTGCCTTCTTTACAGAAGATAATGCAAGAGTTTGAAAGGCAGAATGAGAAGATGGAACTTGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCTTTAGAAGGTGATGAAGAAGAGGAAGAGACAGAAGATCTTGTTAATCAGGTTCTTGATGAGATCGGAATTGATATCAACTCTGAGCTTTTGAACGCACCTGCATCAACCTCAACCGCTGCGCCAGCAGCAAAGAACAGGGTTGCTCAGGCCGAACCAACGGGCAATGATGATGGTGGAATAGATGATGATCTACAGACTAGGTTAGATAACCTAAGGAAAATGTGA

Protein sequence

>Msa1276190

MSFLLGSRKTPAELLRENKRMLDKSIREIERERQGLQSQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGDAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELLNAPASTSTAAPAAKNRVAQAEPTGNDDGGIDDDLQTRLDNLRKM*