AlfalfaGEDB | Msa0534910

M. sativa cultivar zhongmu-4 / Msa0534910

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0534910	XP_013454934.1	86.834	319	26	5	1	317	1	305	0.0	546

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0534910	A0A072UH33	86.834	319	26	5	1	317	1	305	0.0	546

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0534910	0.822640	2.125920e-53	-8.615850e-47
Msa0017510	Msa0534910	0.803217	3.873435e-49	-8.615850e-47
Msa0031340	Msa0534910	0.807665	4.522956e-50	-8.615850e-47
Msa0037880	Msa0534910	0.821229	4.511660e-53	-8.615850e-47
Msa0043980	Msa0534910	0.813875	2.051597e-51	-8.615850e-47
Msa0044000	Msa0534910	0.805486	1.304052e-49	-8.615850e-47
Msa0054480	Msa0534910	0.817401	3.362074e-52	-8.615850e-47
Msa0080090	Msa0534910	0.803838	2.879742e-49	-8.615850e-47
Msa0083280	Msa0534910	0.820142	8.018830e-53	-8.615850e-47
Msa0084380	Msa0534910	0.824717	6.937809e-54	-8.615850e-47
Msa0090360	Msa0534910	0.817019	4.096000e-52	-8.615850e-47
Msa0095560	Msa0534910	0.802573	5.260662e-49	-8.615850e-47
Msa0113750	Msa0534910	0.807218	5.627052e-50	-8.615850e-47
Msa0115400	Msa0534910	0.811029	8.587212e-51	-8.615850e-47
Msa0116080	Msa0534910	0.806855	6.717738e-50	-8.615850e-47
Msa0127800	Msa0534910	0.804011	2.650371e-49	-8.615850e-47
Msa0157290	Msa0534910	0.802959	4.380755e-49	-8.615850e-47
Msa0183050	Msa0534910	0.811304	7.486616e-51	-8.615850e-47
Msa0184040	Msa0534910	0.812460	4.192047e-51	-8.615850e-47
Msa0206010	Msa0534910	0.800770	1.233293e-48	-8.615850e-47
Msa0208090	Msa0534910	0.808473	3.043906e-50	-8.615850e-47
Msa0211150	Msa0534910	0.811860	5.668519e-51	-8.615850e-47
Msa0212990	Msa0534910	0.803257	3.800700e-49	-8.615850e-47
Msa0216910	Msa0534910	0.803591	3.240362e-49	-8.615850e-47
Msa0217680	Msa0534910	0.809646	1.707165e-50	-8.615850e-47
Msa0220580	Msa0534910	0.803321	3.685228e-49	-8.615850e-47
Msa0222620	Msa0534910	0.812532	4.043495e-51	-8.615850e-47
Msa0223010	Msa0534910	0.811591	6.484242e-51	-8.615850e-47
Msa0367870	Msa0534910	0.806878	6.642646e-50	-8.615850e-47
Msa0393080	Msa0534910	0.804936	1.700518e-49	-8.615850e-47
Msa0440750	Msa0534910	0.801232	9.923930e-49	-8.615850e-47
Msa0473190	Msa0534910	0.800829	1.199403e-48	-8.615850e-47
Msa0477130	Msa0534910	-0.802790	4.746800e-49	-8.615850e-47
Msa0481530	Msa0534910	0.842907	1.940914e-58	-8.615850e-47
Msa0249200	Msa0534910	0.802829	4.660200e-49	-8.615850e-47
Msa0264150	Msa0534910	0.800989	1.112459e-48	-8.615850e-47
Msa0279220	Msa0534910	0.812983	3.222113e-51	-8.615850e-47
Msa0279240	Msa0534910	0.800784	1.225085e-48	-8.615850e-47
Msa0280090	Msa0534910	0.822813	1.937690e-53	-8.615850e-47
Msa0287410	Msa0534910	0.815659	8.252642e-52	-8.615850e-47
Msa0287740	Msa0534910	0.801810	7.553347e-49	-8.615850e-47
Msa0309770	Msa0534910	0.814073	1.854823e-51	-8.615850e-47
Msa0318980	Msa0534910	0.817994	2.470248e-52	-8.615850e-47
Msa0326110	Msa0534910	0.803888	2.811521e-49	-8.615850e-47
Msa0339250	Msa0534910	0.812398	4.326616e-51	-8.615850e-47
Msa0339620	Msa0534910	0.803590	3.242250e-49	-8.615850e-47
Msa0345970	Msa0534910	0.808387	3.176054e-50	-8.615850e-47
Msa0359030	Msa0534910	0.810085	1.373764e-50	-8.615850e-47
Msa0363790	Msa0534910	0.806098	9.699080e-50	-8.615850e-47
Msa0488560	Msa0534910	0.811434	7.014191e-51	-8.615850e-47
Msa0529890	Msa0534910	0.843772	1.140916e-58	-8.615850e-47
Msa0531180	Msa0534910	0.808139	3.587236e-50	-8.615850e-47
Msa0534910	Msa0541130	0.817709	2.864443e-52	-8.615850e-47
Msa0534910	Msa0548240	0.805001	1.648103e-49	-8.615850e-47
Msa0534910	Msa0557320	0.800544	1.371302e-48	-8.615850e-47
Msa0534910	Msa0563840	0.800666	1.294728e-48	-8.615850e-47
Msa0534910	Msa0575700	0.800873	1.174767e-48	-8.615850e-47
Msa0534910	Msa0577500	0.803148	4.003818e-49	-8.615850e-47
Msa0534910	Msa0585560	0.831454	1.653772e-55	-8.615850e-47
Msa0534910	Msa0590990	0.865179	7.121490e-65	-8.615850e-47
Msa0534910	Msa0602390	0.822725	2.031668e-53	-8.615850e-47
Msa0534910	Msa0607050	0.831934	1.259820e-55	-8.615850e-47
Msa0534910	Msa0610430	0.826553	2.546147e-54	-8.615850e-47
Msa0534910	Msa0617640	0.823727	1.185378e-53	-8.615850e-47
Msa0534910	Msa0625720	0.841017	6.130854e-58	-8.615850e-47
Msa0534910	Msa0631360	0.831304	1.801246e-55	-8.615850e-47
Msa0534910	Msa0657970	0.806130	9.553708e-50	-8.615850e-47
Msa0534910	Msa0663390	0.835973	1.228458e-56	-8.615850e-47
Msa0534910	Msa0663810	0.819441	1.159796e-52	-8.615850e-47
Msa0534910	Msa0681250	0.805696	1.178736e-49	-8.615850e-47
Msa0534910	Msa0681270	0.810829	9.486908e-51	-8.615850e-47
Msa0534910	Msa0688070	0.800667	1.294305e-48	-8.615850e-47
Msa0534910	Msa0690860	0.803907	2.786035e-49	-8.615850e-47
Msa0534910	Msa0692830	0.806078	9.793250e-50	-8.615850e-47
Msa0534910	Msa0692950	0.808761	2.641618e-50	-8.615850e-47
Msa0534910	Msa0693010	-0.800425	1.450229e-48	-8.615850e-47
Msa0534910	Msa0701830	0.813302	2.742394e-51	-8.615850e-47
Msa0534910	Msa0707250	0.825334	4.961481e-54	-8.615850e-47
Msa0534910	Msa0709400	0.845347	4.297953e-59	-8.615850e-47
Msa0534910	Msa0715700	0.808059	3.729453e-50	-8.615850e-47
Msa0534910	Msa0727550	0.803369	3.602539e-49	-8.615850e-47
Msa0534910	Msa0740510	0.816812	4.559590e-52	-8.615850e-47
Msa0534910	Msa0740520	0.810496	1.119678e-50	-8.615850e-47
Msa0534910	Msa0762970	0.824908	6.253573e-54	-8.615850e-47
Msa0534910	Msa0792540	0.803547	3.308713e-49	-8.615850e-47
Msa0534910	Msa0794670	0.801383	9.242278e-49	-8.615850e-47
Msa0534910	Msa0817460	0.804104	2.534878e-49	-8.615850e-47
Msa0534910	Msa0820770	0.818514	1.883809e-52	-8.615850e-47
Msa0534910	Msa0820850	0.814537	1.464937e-51	-8.615850e-47
Msa0534910	Msa0831110	0.800573	1.353049e-48	-8.615850e-47
Msa0534910	Msa0832340	0.807633	4.596273e-50	-8.615850e-47
Msa0534910	Msa0861090	0.813558	2.408741e-51	-8.615850e-47
Msa0534910	Msa0861130	0.809004	2.343934e-50	-8.615850e-47
Msa0534910	Msa0866550	0.803314	3.698613e-49	-8.615850e-47
Msa0534910	Msa0876810	0.810974	8.827221e-51	-8.615850e-47
Msa0534910	Msa0880020	0.833162	6.246968e-56	-8.615850e-47
Msa0534910	Msa0898750	0.815119	1.088412e-51	-8.615850e-47
Msa0534910	Msa0928130	0.803828	2.892771e-49	-8.615850e-47
Msa0534910	Msa0933100	0.805095	1.575062e-49	-8.615850e-47
Msa0534910	Msa0935670	0.805837	1.100948e-49	-8.615850e-47
Msa0534910	Msa0964310	0.822029	2.947595e-53	-8.615850e-47
Msa0534910	Msa0969520	0.804409	2.190567e-49	-8.615850e-47
Msa0534910	Msa0969600	0.802327	5.914198e-49	-8.615850e-47
Msa0534910	Msa0974070	0.826980	2.014247e-54	-8.615850e-47
Msa0534910	Msa0989360	0.809305	2.020279e-50	-8.615850e-47
Msa0534910	Msa0999870	0.811893	5.574564e-51	-8.615850e-47
Msa0534910	Msa1003620	0.804782	1.831299e-49	-8.615850e-47
Msa0534910	Msa1014540	0.807689	4.470830e-50	-8.615850e-47
Msa0534910	Msa1035480	0.842475	2.527993e-58	-8.615850e-47
Msa0534910	Msa1036610	0.808052	3.742202e-50	-8.615850e-47
Msa0534910	Msa1046460	0.808509	2.991187e-50	-8.615850e-47
Msa0534910	Msa1075540	0.848903	4.555796e-60	-8.615850e-47
Msa0534910	Msa1075650	0.821205	4.568787e-53	-8.615850e-47
Msa0534910	Msa1078170	0.809647	1.706351e-50	-8.615850e-47
Msa0534910	Msa1085260	0.820561	6.426240e-53	-8.615850e-47
Msa0534910	Msa1100050	0.824143	9.467163e-54	-8.615850e-47
Msa0534910	Msa1109680	0.813757	2.177646e-51	-8.615850e-47
Msa0534910	Msa1114410	0.805484	1.305811e-49	-8.615850e-47
Msa0534910	Msa1119480	0.805729	1.159577e-49	-8.615850e-47
Msa0534910	Msa1123380	0.802835	4.646008e-49	-8.615850e-47
Msa0534910	Msa1124960	0.846452	2.153461e-59	-8.615850e-47
Msa0534910	Msa1142020	0.828120	1.072659e-54	-8.615850e-47
Msa0534910	Msa1154280	0.811684	6.188747e-51	-8.615850e-47
Msa0534910	Msa1167340	0.844942	5.529122e-59	-8.615850e-47
Msa0534910	Msa1174040	0.816758	4.688458e-52	-8.615850e-47
Msa0534910	Msa1181250	0.822517	2.270184e-53	-8.615850e-47
Msa0534910	Msa1181330	0.817975	2.494563e-52	-8.615850e-47
Msa0534910	Msa1181910	0.816296	5.949363e-52	-8.615850e-47
Msa0534910	Msa1189070	0.807079	6.021867e-50	-8.615850e-47
Msa0534910	Msa1190920	0.800030	1.744729e-48	-8.615850e-47
Msa0534910	Msa1193290	0.804326	2.279162e-49	-8.615850e-47
Msa0534910	Msa1204530	0.816000	6.929031e-52	-8.615850e-47
Msa0534910	Msa1244600	0.806517	7.914875e-50	-8.615850e-47
Msa0534910	Msa1246510	0.810438	1.152662e-50	-8.615850e-47
Msa0534910	Msa1253020	0.804519	2.077612e-49	-8.615850e-47
Msa0534910	Msa1277660	0.818858	1.574073e-52	-8.615850e-47
Msa0534910	Msa1284550	0.805266	1.450604e-49	-8.615850e-47
Msa0534910	Msa1284680	0.810750	9.868825e-51	-8.615850e-47
Msa0534910	Msa1287440	0.802572	5.263833e-49	-8.615850e-47
Msa0534910	Msa1287460	0.810681	1.021366e-50	-8.615850e-47
Msa0534910	Msa1300340	0.804859	1.764597e-49	-8.615850e-47
Msa0534910	Msa1305340	0.800235	1.584905e-48	-8.615850e-47
Msa0534910	Msa1305660	0.802712	4.924680e-49	-8.615850e-47
Msa0534910	Msa1306840	0.802300	5.989896e-49	-8.615850e-47
Msa0534910	Msa1306920	0.803942	2.739614e-49	-8.615850e-47
Msa0534910	Msa1331000	0.822978	1.773750e-53	-8.615850e-47
Msa0534910	Msa1333480	0.802573	5.261368e-49	-8.615850e-47
Msa0534910	Msa1341950	0.807261	5.511760e-50	-8.615850e-47
Msa0534910	Msa1342900	0.809961	1.460805e-50	-8.615850e-47
Msa0534910	Msa1353980	0.826458	2.682664e-54	-8.615850e-47
Msa0534910	Msa1359040	0.803078	4.138377e-49	-8.615850e-47
Msa0534910	Msa1370070	-0.835236	1.887616e-56	-8.615850e-47
Msa0534910	Msa1372760	0.807060	6.079661e-50	-8.615850e-47
Msa0534910	Msa1372980	0.800899	1.160482e-48	-8.615850e-47
Msa0534910	Msa1373030	0.818950	1.499896e-52	-8.615850e-47
Msa0534910	Msa1377500	0.807838	4.157507e-50	-8.615850e-47
Msa0534910	Msa1388970	0.801357	9.352624e-49	-8.615850e-47
Msa0534910	Msa1392780	0.802009	6.875720e-49	-8.615850e-47
Msa0534910	Msa1393570	0.800710	1.268718e-48	-8.615850e-47
Msa0534910	Msa1400870	-0.810447	1.147309e-50	-8.615850e-47
Msa0534910	Msa1424750	0.807450	5.025043e-50	-8.615850e-47
Msa0534910	Msa1427230	0.824205	9.154428e-54	-8.615850e-47
Msa0534910	Msa1433390	0.808912	2.452835e-50	-8.615850e-47
Msa0534910	Msa1434420	-0.802276	6.058228e-49	-8.615850e-47
Msa0534910	Msa1443850	0.805760	1.142773e-49	-8.615850e-47
Msa0534910	Msa1451160	0.816921	4.308689e-52	-8.615850e-47
Msa0534910	Msa1460830	0.818304	2.101598e-52	-8.615850e-47
Msa0534910	Msa1466540	0.841242	5.350429e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0534910	MtrunA17_Chr4g0008811	86.834	319	26	5	1	317	1	305	0.0	546
Msa0534910	MtrunA17_Chr7g0240771	30.252	357	184	14	9	317	51	390	3.51e-23	98.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 77 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCTTTCGTTTCTCAAATT+AGG	0.099863	4_1:-10648434	None:intergenic
TCATTTATTTATCATAATTT+TGG	0.153280	4_1:-10649444	None:intergenic
TGAAATTTGAATTTGGAATA+TGG	0.209684	4_1:-10647546	None:intergenic
AGTGATTTGAAATTTGAATT+TGG	0.222821	4_1:-10647553	None:intergenic
TTAGGTGTTGGGAGTGATTA+TGG	0.239747	4_1:+10648836	Msa0534910:intron
CATGTTGATGATGATGATTC+TGG	0.246229	4_1:-10648040	None:intergenic
TTCTTTCGTTTCTCAAATTA+GGG	0.263492	4_1:-10648433	None:intergenic
GATCACGATGTAATCATTTC+TGG	0.265000	4_1:+10649371	Msa0534910:three_prime_UTR
AATAACAAAGCCGGATTTCC+TGG	0.285031	4_1:+10648407	Msa0534910:CDS
TTGTTTCTTGATTGGAAAAC+AGG	0.293636	4_1:+10649201	Msa0534910:three_prime_UTR
GTAGATGATTAAGAAATATT+AGG	0.296096	4_1:+10649145	Msa0534910:three_prime_UTR
AGGGATTAAAGTGAAATATT+AGG	0.304012	4_1:+10649084	Msa0534910:three_prime_UTR
ATAGTAAGAGTATACTAATA+AGG	0.305443	4_1:-10647492	None:intergenic
GTACAAATTTGTTTCTTGAT+TGG	0.306693	4_1:+10649193	Msa0534910:three_prime_UTR
AAAGCATGAACAACTCTTTC+AGG	0.307734	4_1:-10648640	None:intergenic
TTCTTCCTCCAGGGATATTT+CGG	0.316300	4_1:-10648301	None:intergenic
GAACAAGGTTGGATATGATT+TGG	0.358137	4_1:+10649323	Msa0534910:three_prime_UTR
CTCAAGAATGGACTTATTGA+TGG	0.358272	4_1:+10648924	Msa0534910:CDS
TTTCTCAAATTAGGGTTTCC+AGG	0.367756	4_1:-10648425	None:intergenic
AGTTTCGCCGAGTTGATATC+TGG	0.386735	4_1:+10649034	Msa0534910:three_prime_UTR
TCAGTGTTCCTTCTTCCTCC+AGG	0.391507	4_1:-10648311	None:intergenic
ATTAGGGTTTCCAGGAAATC+CGG	0.430658	4_1:-10648417	None:intergenic
TAGTAAGAGTATACTAATAA+GGG	0.434050	4_1:-10647491	None:intergenic
GGAAAACAGGGGAGGGGCAA+TGG	0.461054	4_1:+10649214	Msa0534910:three_prime_UTR
ATCACGATGTAATCATTTCT+GGG	0.466856	4_1:+10649372	Msa0534910:three_prime_UTR
GGATGTAATTACAGCTTGTA+AGG	0.470803	4_1:+10649349	Msa0534910:three_prime_UTR
AAAATTAGAAAGAGGGTGAA+AGG	0.473844	4_1:-10647450	None:intergenic
TTGAAAACATTATTAAATGG+AGG	0.481808	4_1:+10649064	Msa0534910:three_prime_UTR
CAGTGTTCCTTCTTCCTCCA+GGG	0.484157	4_1:-10648310	None:intergenic
ATGTTGATGATGATGATTCT+GGG	0.487674	4_1:-10648039	None:intergenic
TGAAAACATTATTAAATGGA+GGG	0.491523	4_1:+10649065	Msa0534910:three_prime_UTR
CAGAGGTGAACCGTGAGATC+CGG	0.494994	4_1:+10648897	Msa0534910:CDS
GTGAAAGGGAAAGTAGAGAA+TGG	0.502737	4_1:-10647435	None:intergenic
TTAAAATAGTCGAATCATGA+TGG	0.507248	4_1:+10649008	Msa0534910:three_prime_UTR
GAGATTGAAACGTCGTCGTA+AGG	0.507589	4_1:-10647697	None:intergenic
TGTCTTCATCTGCATCTGCA+TGG	0.512850	4_1:+10648360	Msa0534910:CDS
AAATTAGAAAGAGGGTGAAA+GGG	0.515807	4_1:-10647449	None:intergenic
AAGAGTGGTTGAACTTGAAA+CGG	0.521960	4_1:-10647671	None:intergenic
GGAAATTACCGAAATATCCC+TGG	0.523195	4_1:+10648293	Msa0534910:CDS
TTTCTGTTACCTTGTTGTTG+TGG	0.525615	4_1:-10647753	None:intergenic
CTTGATTGGAAAACAGGGGA+GGG	0.529776	4_1:+10649207	Msa0534910:three_prime_UTR
AAGTTGAAGAAGAACAAGGT+TGG	0.534686	4_1:+10649312	Msa0534910:three_prime_UTR
GCTATTTCACAGAGAAGAAG+TGG	0.536018	4_1:+10648272	Msa0534910:CDS
AGATCCGGCTTCCTCAAGAA+TGG	0.537735	4_1:+10648912	Msa0534910:CDS
TTGAATCGTAAATTTGAAGA+GGG	0.542312	4_1:+10648661	Msa0534910:CDS
CTGCAAGTTCTGCTTCAAAA+CGG	0.546551	4_1:-10647895	None:intergenic
GATCTGCTACATGCAGCTGC+AGG	0.549527	4_1:+10647930	Msa0534910:CDS
CTTGAGGAAGCCGGATCTCA+CGG	0.554510	4_1:-10648907	None:intergenic
TCAAGAATGGACTTATTGAT+GGG	0.555455	4_1:+10648925	Msa0534910:exon
AGAAACGAAAGAAATGGTAC+TGG	0.560342	4_1:+10648443	Msa0534910:CDS
AAGTCCATTCTTGAGGAAGC+CGG	0.565560	4_1:-10648916	None:intergenic
GAAATATCCCTGGAGGAAGA+AGG	0.566843	4_1:+10648303	Msa0534910:CDS
GGAAGCAACAATAACAAAGC+CGG	0.570578	4_1:+10648398	Msa0534910:CDS
AATTTGAGAAACGAAAGAAA+TGG	0.570863	4_1:+10648437	Msa0534910:CDS
AGCAGAACTTGCAGAGAGCG+AGG	0.573031	4_1:+10647904	Msa0534910:CDS
TGAGAAGTTGAAGAAGAACA+AGG	0.573721	4_1:+10649308	Msa0534910:three_prime_UTR
AGTCATTTGACGAGTTAACT+CGG	0.583935	4_1:-10647719	None:intergenic
TCTTGATTGGAAAACAGGGG+AGG	0.584563	4_1:+10649206	Msa0534910:three_prime_UTR
TTTGAATCGTAAATTTGAAG+AGG	0.586109	4_1:+10648660	Msa0534910:CDS
AGGAAGAAGGAACACTGAAA+CGG	0.589211	4_1:+10648316	Msa0534910:CDS
GAAGAGGGTATGATGATGAG+AGG	0.594031	4_1:+10648676	Msa0534910:CDS
AGCTACGCGAAGAGTTCAAG+TGG	0.594118	4_1:+10647864	Msa0534910:CDS
TTGAGATGTTGAAGAAGCAG+TGG	0.595071	4_1:+10648222	Msa0534910:CDS
CTCATCTCTCCACAACAACA+AGG	0.596113	4_1:+10647744	Msa0534910:CDS
TTGATTGGAAAACAGGGGAG+GGG	0.597321	4_1:+10649208	Msa0534910:three_prime_UTR
GCATGGAGTTCTGTGCAGAA+TGG	0.598072	4_1:+10648377	Msa0534910:CDS
CATCAATAAGTCCATTCTTG+AGG	0.598205	4_1:-10648923	None:intergenic
TGTTTCTTGATTGGAAAACA+GGG	0.600841	4_1:+10649202	Msa0534910:three_prime_UTR
GAATGGAATGAACAATGAAG+AGG	0.614881	4_1:-10647418	None:intergenic
CGTGAAGCAGCAGCTGACAG+AGG	0.646842	4_1:+10648880	Msa0534910:CDS
GTTTCTTGATTGGAAAACAG+GGG	0.649330	4_1:+10649203	Msa0534910:three_prime_UTR
GATTCTGGGTGTGAAATCCA+TGG	0.651677	4_1:-10648025	None:intergenic
AGGTTGGATATGATTTGGTG+AGG	0.683945	4_1:+10649328	Msa0534910:three_prime_UTR
GCAGTGGTTGAAGCAACGAG+AGG	0.691118	4_1:+10648238	Msa0534910:CDS
AATTACCGAAATATCCCTGG+AGG	0.707791	4_1:+10648296	Msa0534910:CDS
AATCAAACCAGATATCAACT+CGG	0.711403	4_1:-10649041	None:intergenic
TCAGTAACATCAACAACACG+AGG	0.734315	4_1:-10648476	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATAATAAAAATTAGAAAGA+GGG	-	chr4_1:10647460-10647479	None:intergenic	10.0%
!!	TTATAATAAAAATTAGAAAG+AGG	-	chr4_1:10647461-10647480	None:intergenic	10.0%
!!	AAAAAAAAAAAATACTCAAA+TGG	+	chr4_1:10647576-10647595	Msa0534910:exon	10.0%
!!!	ATTTTTTTTTTTTTGTTCAT+AGG	+	chr4_1:10647824-10647843	Msa0534910:intron	10.0%
!!!	ATTTTGAAAACATTATTAAA+TGG	+	chr4_1:10649061-10649080	Msa0534910:three_prime_UTR	10.0%
!!!	AAATATTAGGTTTATATTTT+AGG	+	chr4_1:10649097-10649116	Msa0534910:three_prime_UTR	10.0%
!!!	TCATTTATTTATCATAATTT+TGG	-	chr4_1:10649447-10649466	None:intergenic	10.0%
!!	TATAATAAAAATTAGAAAGA+GGG	-	chr4_1:10647460-10647479	None:intergenic	10.0%
!!	TTATAATAAAAATTAGAAAG+AGG	-	chr4_1:10647461-10647480	None:intergenic	10.0%
!!	AAAAAAAAAAAATACTCAAA+TGG	+	chr4_1:10647576-10647595	Msa0534910:exon	10.0%
!!!	ATTTTTTTTTTTTTGTTCAT+AGG	+	chr4_1:10647824-10647843	Msa0534910:intron	10.0%
!!!	ATTTTGAAAACATTATTAAA+TGG	+	chr4_1:10649061-10649080	Msa0534910:three_prime_UTR	10.0%
!!!	AAATATTAGGTTTATATTTT+AGG	+	chr4_1:10649097-10649116	Msa0534910:three_prime_UTR	10.0%
!!!	TCATTTATTTATCATAATTT+TGG	-	chr4_1:10649447-10649466	None:intergenic	10.0%
!!!	TAGTTAATTAAATTTTTACC+TGG	-	chr4_1:10648515-10648534	None:intergenic	15.0%
!!!	ATTTTTTGTTTGTGTTTTTT+TGG	+	chr4_1:10648589-10648608	Msa0534910:intron	15.0%
!!!	TTTTTTGTTTGTGTTTTTTT+GGG	+	chr4_1:10648590-10648609	Msa0534910:intron	15.0%
!!!	TTAAGTTTTTTGTATTGATT+TGG	+	chr4_1:10648776-10648795	Msa0534910:intron	15.0%
!!!	TAAGTTTTTTGTATTGATTT+GGG	+	chr4_1:10648777-10648796	Msa0534910:intron	15.0%
!!!	TTATTTATCATAATTTTGGT+TGG	-	chr4_1:10649443-10649462	None:intergenic	15.0%
!!!	TAGTTAATTAAATTTTTACC+TGG	-	chr4_1:10648515-10648534	None:intergenic	15.0%
!!!	ATTTTTTGTTTGTGTTTTTT+TGG	+	chr4_1:10648589-10648608	Msa0534910:intron	15.0%
!!!	TTTTTTGTTTGTGTTTTTTT+GGG	+	chr4_1:10648590-10648609	Msa0534910:intron	15.0%
!!!	TTAAGTTTTTTGTATTGATT+TGG	+	chr4_1:10648776-10648795	Msa0534910:intron	15.0%
!!!	TAAGTTTTTTGTATTGATTT+GGG	+	chr4_1:10648777-10648796	Msa0534910:intron	15.0%
!!!	TTATTTATCATAATTTTGGT+TGG	-	chr4_1:10649443-10649462	None:intergenic	15.0%
!!!	TAGTAAGAGTATACTAATAA+GGG	-	chr4_1:10647494-10647513	None:intergenic	20.0%
!!!	ATAGTAAGAGTATACTAATA+AGG	-	chr4_1:10647495-10647514	None:intergenic	20.0%
!!!	TGAAATTTGAATTTGGAATA+TGG	-	chr4_1:10647549-10647568	None:intergenic	20.0%
!!!	AGTGATTTGAAATTTGAATT+TGG	-	chr4_1:10647556-10647575	None:intergenic	20.0%
!!!	TTTTTGTTTGTGTTTTTTTG+GGG	+	chr4_1:10648591-10648610	Msa0534910:intron	20.0%
!!!	AAGTTTTTTGTATTGATTTG+GGG	+	chr4_1:10648778-10648797	Msa0534910:intron	20.0%
!!	TTGAAAACATTATTAAATGG+AGG	+	chr4_1:10649064-10649083	Msa0534910:three_prime_UTR	20.0%
!!	TGAAAACATTATTAAATGGA+GGG	+	chr4_1:10649065-10649084	Msa0534910:three_prime_UTR	20.0%
!!	GTAGATGATTAAGAAATATT+AGG	+	chr4_1:10649145-10649164	Msa0534910:three_prime_UTR	20.0%
!!!	TTGAAGCAGAAAATAATTTT+AGG	+	chr4_1:10649251-10649270	Msa0534910:three_prime_UTR	20.0%
!!!	TGAAGCAGAAAATAATTTTA+GGG	+	chr4_1:10649252-10649271	Msa0534910:three_prime_UTR	20.0%
!!!	AAATAATTTTAGGGGTATTA+TGG	+	chr4_1:10649261-10649280	Msa0534910:three_prime_UTR	20.0%
!!!	AATAATTTTAGGGGTATTAT+GGG	+	chr4_1:10649262-10649281	Msa0534910:three_prime_UTR	20.0%
!!!	TAGTAAGAGTATACTAATAA+GGG	-	chr4_1:10647494-10647513	None:intergenic	20.0%
!!!	ATAGTAAGAGTATACTAATA+AGG	-	chr4_1:10647495-10647514	None:intergenic	20.0%
!!!	TGAAATTTGAATTTGGAATA+TGG	-	chr4_1:10647549-10647568	None:intergenic	20.0%
!!!	AGTGATTTGAAATTTGAATT+TGG	-	chr4_1:10647556-10647575	None:intergenic	20.0%
!!!	TTTTTGTTTGTGTTTTTTTG+GGG	+	chr4_1:10648591-10648610	Msa0534910:intron	20.0%
!!!	AAGTTTTTTGTATTGATTTG+GGG	+	chr4_1:10648778-10648797	Msa0534910:intron	20.0%
!!	TTGAAAACATTATTAAATGG+AGG	+	chr4_1:10649064-10649083	Msa0534910:three_prime_UTR	20.0%
!!	TGAAAACATTATTAAATGGA+GGG	+	chr4_1:10649065-10649084	Msa0534910:three_prime_UTR	20.0%
!!	GTAGATGATTAAGAAATATT+AGG	+	chr4_1:10649145-10649164	Msa0534910:three_prime_UTR	20.0%
!!!	TTGAAGCAGAAAATAATTTT+AGG	+	chr4_1:10649251-10649270	Msa0534910:three_prime_UTR	20.0%
!!!	TGAAGCAGAAAATAATTTTA+GGG	+	chr4_1:10649252-10649271	Msa0534910:three_prime_UTR	20.0%
!!!	AAATAATTTTAGGGGTATTA+TGG	+	chr4_1:10649261-10649280	Msa0534910:three_prime_UTR	20.0%
!!!	AATAATTTTAGGGGTATTAT+GGG	+	chr4_1:10649262-10649281	Msa0534910:three_prime_UTR	20.0%
!!!	TTTTTGAAGAGGTTTTGATA+TGG	-	chr4_1:10647524-10647543	None:intergenic	25.0%
!!	AATGAAAGATTTTTCGTCTT+CGG	-	chr4_1:10647629-10647648	None:intergenic	25.0%
!	TTCTTTCGTTTCTCAAATTA+GGG	-	chr4_1:10648436-10648455	None:intergenic	25.0%
!	TTTCTTTCGTTTCTCAAATT+AGG	-	chr4_1:10648437-10648456	None:intergenic	25.0%
!	AATTTGAGAAACGAAAGAAA+TGG	+	chr4_1:10648437-10648456	Msa0534910:CDS	25.0%
!!!	TTTTGTTTGTGTTTTTTTGG+GGG	+	chr4_1:10648592-10648611	Msa0534910:intron	25.0%
!	TTTGAATCGTAAATTTGAAG+AGG	+	chr4_1:10648660-10648679	Msa0534910:CDS	25.0%
!	TTGAATCGTAAATTTGAAGA+GGG	+	chr4_1:10648661-10648680	Msa0534910:CDS	25.0%
!!!	GGAACTTCAAATTTTGAAAA+TGG	+	chr4_1:10648727-10648746	Msa0534910:CDS	25.0%
!!!	AGTTTTTTGTATTGATTTGG+GGG	+	chr4_1:10648779-10648798	Msa0534910:intron	25.0%
!!!	TGATGTGTTTGTTGTATTTT+AGG	+	chr4_1:10648818-10648837	Msa0534910:intron	25.0%
!!!	TTTGTTGTATTTTAGGTGTT+GGG	+	chr4_1:10648825-10648844	Msa0534910:intron	25.0%
!	TTAAAATAGTCGAATCATGA+TGG	+	chr4_1:10649008-10649027	Msa0534910:three_prime_UTR	25.0%
!	AGGGATTAAAGTGAAATATT+AGG	+	chr4_1:10649084-10649103	Msa0534910:three_prime_UTR	25.0%
!!	GTACAAATTTGTTTCTTGAT+TGG	+	chr4_1:10649193-10649212	Msa0534910:three_prime_UTR	25.0%
!!	GAAGCAGAAAATAATTTTAG+GGG	+	chr4_1:10649253-10649272	Msa0534910:three_prime_UTR	25.0%
!	GGTATTATGGGAAAAATAAA+AGG	+	chr4_1:10649274-10649293	Msa0534910:three_prime_UTR	25.0%
!!!	TTTTTGAAGAGGTTTTGATA+TGG	-	chr4_1:10647524-10647543	None:intergenic	25.0%
!!	AATGAAAGATTTTTCGTCTT+CGG	-	chr4_1:10647629-10647648	None:intergenic	25.0%
!	TTCTTTCGTTTCTCAAATTA+GGG	-	chr4_1:10648436-10648455	None:intergenic	25.0%
!	TTTCTTTCGTTTCTCAAATT+AGG	-	chr4_1:10648437-10648456	None:intergenic	25.0%
!	AATTTGAGAAACGAAAGAAA+TGG	+	chr4_1:10648437-10648456	Msa0534910:CDS	25.0%
!!!	TTTTGTTTGTGTTTTTTTGG+GGG	+	chr4_1:10648592-10648611	Msa0534910:intron	25.0%
!	TTTGAATCGTAAATTTGAAG+AGG	+	chr4_1:10648660-10648679	Msa0534910:CDS	25.0%
!	TTGAATCGTAAATTTGAAGA+GGG	+	chr4_1:10648661-10648680	Msa0534910:CDS	25.0%
!!!	GGAACTTCAAATTTTGAAAA+TGG	+	chr4_1:10648727-10648746	Msa0534910:CDS	25.0%
!!!	AGTTTTTTGTATTGATTTGG+GGG	+	chr4_1:10648779-10648798	Msa0534910:intron	25.0%
!!!	TGATGTGTTTGTTGTATTTT+AGG	+	chr4_1:10648818-10648837	Msa0534910:intron	25.0%
!!!	TTTGTTGTATTTTAGGTGTT+GGG	+	chr4_1:10648825-10648844	Msa0534910:intron	25.0%
!	TTAAAATAGTCGAATCATGA+TGG	+	chr4_1:10649008-10649027	Msa0534910:three_prime_UTR	25.0%
!	AGGGATTAAAGTGAAATATT+AGG	+	chr4_1:10649084-10649103	Msa0534910:three_prime_UTR	25.0%
!!	GTACAAATTTGTTTCTTGAT+TGG	+	chr4_1:10649193-10649212	Msa0534910:three_prime_UTR	25.0%
!!	GAAGCAGAAAATAATTTTAG+GGG	+	chr4_1:10649253-10649272	Msa0534910:three_prime_UTR	25.0%
!	GGTATTATGGGAAAAATAAA+AGG	+	chr4_1:10649274-10649293	Msa0534910:three_prime_UTR	25.0%
	AAATTAGAAAGAGGGTGAAA+GGG	-	chr4_1:10647452-10647471	None:intergenic	30.0%
	AAAATTAGAAAGAGGGTGAA+AGG	-	chr4_1:10647453-10647472	None:intergenic	30.0%
!!!	GGAATATGGTTTTTTTGAAG+AGG	-	chr4_1:10647535-10647554	None:intergenic	30.0%
!!!	TCATAGGTTGTTTTTGAGAA+TGG	+	chr4_1:10647840-10647859	Msa0534910:intron	30.0%
!	GATGAAGAAGAAGCTTTTTA+CGG	+	chr4_1:10647984-10648003	Msa0534910:CDS	30.0%
!!	ATGTTGATGATGATGATTCT+GGG	-	chr4_1:10648042-10648061	None:intergenic	30.0%
	ACTGAATCAAGAAAAAATCC+AGG	+	chr4_1:10648494-10648513	Msa0534910:CDS	30.0%
	TGTAGGTAGTAAAAATGTGA+TGG	+	chr4_1:10648615-10648634	Msa0534910:intron	30.0%
!!!	GTTTGTTGTATTTTAGGTGT+TGG	+	chr4_1:10648824-10648843	Msa0534910:intron	30.0%
!	TCAAGAATGGACTTATTGAT+GGG	+	chr4_1:10648925-10648944	Msa0534910:exon	30.0%
!!!	AGTCCGATTTTTAAAACATC+GGG	-	chr4_1:10648952-10648971	None:intergenic	30.0%
!!!	CAGTCCGATTTTTAAAACAT+CGG	-	chr4_1:10648953-10648972	None:intergenic	30.0%
!!	TTTTAAAAATCGGACTGGAT+CGG	+	chr4_1:10648956-10648975	Msa0534910:three_prime_UTR	30.0%
	AATCAAACCAGATATCAACT+CGG	-	chr4_1:10649044-10649063	None:intergenic	30.0%
!!!	TACTATTTTTTCTTGCTGCA+AGG	-	chr4_1:10649176-10649195	None:intergenic	30.0%
!	TTGTTTCTTGATTGGAAAAC+AGG	+	chr4_1:10649201-10649220	Msa0534910:three_prime_UTR	30.0%
	TGTTTCTTGATTGGAAAACA+GGG	+	chr4_1:10649202-10649221	Msa0534910:three_prime_UTR	30.0%
	ATCACGATGTAATCATTTCT+GGG	+	chr4_1:10649372-10649391	Msa0534910:three_prime_UTR	30.0%
!!!	ATAATTTTGGTTGGTTAGAC+AGG	-	chr4_1:10649434-10649453	None:intergenic	30.0%
	AAATTAGAAAGAGGGTGAAA+GGG	-	chr4_1:10647452-10647471	None:intergenic	30.0%
	AAAATTAGAAAGAGGGTGAA+AGG	-	chr4_1:10647453-10647472	None:intergenic	30.0%
!!!	GGAATATGGTTTTTTTGAAG+AGG	-	chr4_1:10647535-10647554	None:intergenic	30.0%
!!!	TCATAGGTTGTTTTTGAGAA+TGG	+	chr4_1:10647840-10647859	Msa0534910:intron	30.0%
!	GATGAAGAAGAAGCTTTTTA+CGG	+	chr4_1:10647984-10648003	Msa0534910:CDS	30.0%
!!	ATGTTGATGATGATGATTCT+GGG	-	chr4_1:10648042-10648061	None:intergenic	30.0%
	ACTGAATCAAGAAAAAATCC+AGG	+	chr4_1:10648494-10648513	Msa0534910:CDS	30.0%
	TGTAGGTAGTAAAAATGTGA+TGG	+	chr4_1:10648615-10648634	Msa0534910:intron	30.0%
!!!	GTTTGTTGTATTTTAGGTGT+TGG	+	chr4_1:10648824-10648843	Msa0534910:intron	30.0%
!	TCAAGAATGGACTTATTGAT+GGG	+	chr4_1:10648925-10648944	Msa0534910:exon	30.0%
!!!	AGTCCGATTTTTAAAACATC+GGG	-	chr4_1:10648952-10648971	None:intergenic	30.0%
!!!	CAGTCCGATTTTTAAAACAT+CGG	-	chr4_1:10648953-10648972	None:intergenic	30.0%
!!	TTTTAAAAATCGGACTGGAT+CGG	+	chr4_1:10648956-10648975	Msa0534910:three_prime_UTR	30.0%
	AATCAAACCAGATATCAACT+CGG	-	chr4_1:10649044-10649063	None:intergenic	30.0%
!!!	TACTATTTTTTCTTGCTGCA+AGG	-	chr4_1:10649176-10649195	None:intergenic	30.0%
!	TTGTTTCTTGATTGGAAAAC+AGG	+	chr4_1:10649201-10649220	Msa0534910:three_prime_UTR	30.0%
	TGTTTCTTGATTGGAAAACA+GGG	+	chr4_1:10649202-10649221	Msa0534910:three_prime_UTR	30.0%
	ATCACGATGTAATCATTTCT+GGG	+	chr4_1:10649372-10649391	Msa0534910:three_prime_UTR	30.0%
!!!	ATAATTTTGGTTGGTTAGAC+AGG	-	chr4_1:10649434-10649453	None:intergenic	30.0%
	AAGAGTGGTTGAACTTGAAA+CGG	-	chr4_1:10647674-10647693	None:intergenic	35.0%
	AGTCATTTGACGAGTTAACT+CGG	-	chr4_1:10647722-10647741	None:intergenic	35.0%
!!	TTTCTGTTACCTTGTTGTTG+TGG	-	chr4_1:10647756-10647775	None:intergenic	35.0%
!!	AAATCCATGGTGCTTTTTAG+GGG	-	chr4_1:10648015-10648034	None:intergenic	35.0%
!!	GAAATCCATGGTGCTTTTTA+GGG	-	chr4_1:10648016-10648035	None:intergenic	35.0%
!!	TGAAATCCATGGTGCTTTTT+AGG	-	chr4_1:10648017-10648036	None:intergenic	35.0%
!!	CATGTTGATGATGATGATTC+TGG	-	chr4_1:10648043-10648062	None:intergenic	35.0%
!!	ACGGTTTTTCAGAGTAATGT+TGG	+	chr4_1:10648335-10648354	Msa0534910:CDS	35.0%
	TTTCTCAAATTAGGGTTTCC+AGG	-	chr4_1:10648428-10648447	None:intergenic	35.0%
	AGAAACGAAAGAAATGGTAC+TGG	+	chr4_1:10648443-10648462	Msa0534910:CDS	35.0%
	AAAGCATGAACAACTCTTTC+AGG	-	chr4_1:10648643-10648662	None:intergenic	35.0%
!!	CAGCAGAAGAATCGTTTTTA+TGG	+	chr4_1:10648706-10648725	Msa0534910:CDS	35.0%
!	ATGGATTTTCTCAGCAAAAG+CGG	+	chr4_1:10648855-10648874	Msa0534910:CDS	35.0%
	CATCAATAAGTCCATTCTTG+AGG	-	chr4_1:10648926-10648945	None:intergenic	35.0%
!	CTCAAGAATGGACTTATTGA+TGG	+	chr4_1:10648924-10648943	Msa0534910:CDS	35.0%
!!!	GGACCCGATGTTTTAAAAAT+CGG	+	chr4_1:10648946-10648965	Msa0534910:three_prime_UTR	35.0%
!!!	CGATGTTTTAAAAATCGGAC+TGG	+	chr4_1:10648951-10648970	Msa0534910:three_prime_UTR	35.0%
	GTTTCTTGATTGGAAAACAG+GGG	+	chr4_1:10649203-10649222	Msa0534910:three_prime_UTR	35.0%
	TGAGAAGTTGAAGAAGAACA+AGG	+	chr4_1:10649308-10649327	Msa0534910:three_prime_UTR	35.0%
	AAGTTGAAGAAGAACAAGGT+TGG	+	chr4_1:10649312-10649331	Msa0534910:three_prime_UTR	35.0%
	GAACAAGGTTGGATATGATT+TGG	+	chr4_1:10649323-10649342	Msa0534910:three_prime_UTR	35.0%
	GGATGTAATTACAGCTTGTA+AGG	+	chr4_1:10649349-10649368	Msa0534910:three_prime_UTR	35.0%
	GATCACGATGTAATCATTTC+TGG	+	chr4_1:10649371-10649390	Msa0534910:three_prime_UTR	35.0%
	AAGAGTGGTTGAACTTGAAA+CGG	-	chr4_1:10647674-10647693	None:intergenic	35.0%
	AGTCATTTGACGAGTTAACT+CGG	-	chr4_1:10647722-10647741	None:intergenic	35.0%
!!	TTTCTGTTACCTTGTTGTTG+TGG	-	chr4_1:10647756-10647775	None:intergenic	35.0%
!!	AAATCCATGGTGCTTTTTAG+GGG	-	chr4_1:10648015-10648034	None:intergenic	35.0%
!!	GAAATCCATGGTGCTTTTTA+GGG	-	chr4_1:10648016-10648035	None:intergenic	35.0%
!!	TGAAATCCATGGTGCTTTTT+AGG	-	chr4_1:10648017-10648036	None:intergenic	35.0%
!!	CATGTTGATGATGATGATTC+TGG	-	chr4_1:10648043-10648062	None:intergenic	35.0%
!!	ACGGTTTTTCAGAGTAATGT+TGG	+	chr4_1:10648335-10648354	Msa0534910:CDS	35.0%
	TTTCTCAAATTAGGGTTTCC+AGG	-	chr4_1:10648428-10648447	None:intergenic	35.0%
	AGAAACGAAAGAAATGGTAC+TGG	+	chr4_1:10648443-10648462	Msa0534910:CDS	35.0%
	AAAGCATGAACAACTCTTTC+AGG	-	chr4_1:10648643-10648662	None:intergenic	35.0%
!!	CAGCAGAAGAATCGTTTTTA+TGG	+	chr4_1:10648706-10648725	Msa0534910:CDS	35.0%
!	ATGGATTTTCTCAGCAAAAG+CGG	+	chr4_1:10648855-10648874	Msa0534910:CDS	35.0%
	CATCAATAAGTCCATTCTTG+AGG	-	chr4_1:10648926-10648945	None:intergenic	35.0%
!	CTCAAGAATGGACTTATTGA+TGG	+	chr4_1:10648924-10648943	Msa0534910:CDS	35.0%
!!!	GGACCCGATGTTTTAAAAAT+CGG	+	chr4_1:10648946-10648965	Msa0534910:three_prime_UTR	35.0%
!!!	CGATGTTTTAAAAATCGGAC+TGG	+	chr4_1:10648951-10648970	Msa0534910:three_prime_UTR	35.0%
	GTTTCTTGATTGGAAAACAG+GGG	+	chr4_1:10649203-10649222	Msa0534910:three_prime_UTR	35.0%
	TGAGAAGTTGAAGAAGAACA+AGG	+	chr4_1:10649308-10649327	Msa0534910:three_prime_UTR	35.0%
	AAGTTGAAGAAGAACAAGGT+TGG	+	chr4_1:10649312-10649331	Msa0534910:three_prime_UTR	35.0%
	GAACAAGGTTGGATATGATT+TGG	+	chr4_1:10649323-10649342	Msa0534910:three_prime_UTR	35.0%
	GGATGTAATTACAGCTTGTA+AGG	+	chr4_1:10649349-10649368	Msa0534910:three_prime_UTR	35.0%
	GATCACGATGTAATCATTTC+TGG	+	chr4_1:10649371-10649390	Msa0534910:three_prime_UTR	35.0%
	GTGAAAGGGAAAGTAGAGAA+TGG	-	chr4_1:10647438-10647457	None:intergenic	40.0%
	CTGCAAGTTCTGCTTCAAAA+CGG	-	chr4_1:10647898-10647917	None:intergenic	40.0%
!!	TTTACCCCTAAAAAGCACCA+TGG	+	chr4_1:10648008-10648027	Msa0534910:CDS	40.0%
	TTGAGATGTTGAAGAAGCAG+TGG	+	chr4_1:10648222-10648241	Msa0534910:CDS	40.0%
!	GCTATTTCACAGAGAAGAAG+TGG	+	chr4_1:10648272-10648291	Msa0534910:CDS	40.0%
	GGAAATTACCGAAATATCCC+TGG	+	chr4_1:10648293-10648312	Msa0534910:CDS	40.0%
	AATTACCGAAATATCCCTGG+AGG	+	chr4_1:10648296-10648315	Msa0534910:CDS	40.0%
	TTCTTCCTCCAGGGATATTT+CGG	-	chr4_1:10648304-10648323	None:intergenic	40.0%
	AGGAAGAAGGAACACTGAAA+CGG	+	chr4_1:10648316-10648335	Msa0534910:CDS	40.0%
	GGAAGCAACAATAACAAAGC+CGG	+	chr4_1:10648398-10648417	Msa0534910:CDS	40.0%
	AATAACAAAGCCGGATTTCC+TGG	+	chr4_1:10648407-10648426	Msa0534910:CDS	40.0%
	ATTAGGGTTTCCAGGAAATC+CGG	-	chr4_1:10648420-10648439	None:intergenic	40.0%
	TCAGTAACATCAACAACACG+AGG	-	chr4_1:10648479-10648498	None:intergenic	40.0%
!!!	TTGTGTTTTTTTGGGGGTGT+AGG	+	chr4_1:10648598-10648617	Msa0534910:intron	40.0%
!!	TTAGGTGTTGGGAGTGATTA+TGG	+	chr4_1:10648836-10648855	Msa0534910:intron	40.0%
!!	AGGTTGGATATGATTTGGTG+AGG	+	chr4_1:10649328-10649347	Msa0534910:three_prime_UTR	40.0%
	GTGAAAGGGAAAGTAGAGAA+TGG	-	chr4_1:10647438-10647457	None:intergenic	40.0%
	CTGCAAGTTCTGCTTCAAAA+CGG	-	chr4_1:10647898-10647917	None:intergenic	40.0%
!!	TTTACCCCTAAAAAGCACCA+TGG	+	chr4_1:10648008-10648027	Msa0534910:CDS	40.0%
	TTGAGATGTTGAAGAAGCAG+TGG	+	chr4_1:10648222-10648241	Msa0534910:CDS	40.0%
!	GCTATTTCACAGAGAAGAAG+TGG	+	chr4_1:10648272-10648291	Msa0534910:CDS	40.0%
	GGAAATTACCGAAATATCCC+TGG	+	chr4_1:10648293-10648312	Msa0534910:CDS	40.0%
	AATTACCGAAATATCCCTGG+AGG	+	chr4_1:10648296-10648315	Msa0534910:CDS	40.0%
	TTCTTCCTCCAGGGATATTT+CGG	-	chr4_1:10648304-10648323	None:intergenic	40.0%
	AGGAAGAAGGAACACTGAAA+CGG	+	chr4_1:10648316-10648335	Msa0534910:CDS	40.0%
	GGAAGCAACAATAACAAAGC+CGG	+	chr4_1:10648398-10648417	Msa0534910:CDS	40.0%
	AATAACAAAGCCGGATTTCC+TGG	+	chr4_1:10648407-10648426	Msa0534910:CDS	40.0%
	ATTAGGGTTTCCAGGAAATC+CGG	-	chr4_1:10648420-10648439	None:intergenic	40.0%
	TCAGTAACATCAACAACACG+AGG	-	chr4_1:10648479-10648498	None:intergenic	40.0%
!!!	TTGTGTTTTTTTGGGGGTGT+AGG	+	chr4_1:10648598-10648617	Msa0534910:intron	40.0%
!!	TTAGGTGTTGGGAGTGATTA+TGG	+	chr4_1:10648836-10648855	Msa0534910:intron	40.0%
!!	AGGTTGGATATGATTTGGTG+AGG	+	chr4_1:10649328-10649347	Msa0534910:three_prime_UTR	40.0%
	GTCGTCGTAAGGAAAAAGAG+TGG	-	chr4_1:10647689-10647708	None:intergenic	45.0%
	GAGATTGAAACGTCGTCGTA+AGG	-	chr4_1:10647700-10647719	None:intergenic	45.0%
	CTCATCTCTCCACAACAACA+AGG	+	chr4_1:10647744-10647763	Msa0534910:CDS	45.0%
	GATTCTGGGTGTGAAATCCA+TGG	-	chr4_1:10648028-10648047	None:intergenic	45.0%
	GAAATATCCCTGGAGGAAGA+AGG	+	chr4_1:10648303-10648322	Msa0534910:CDS	45.0%
	TGTCTTCATCTGCATCTGCA+TGG	+	chr4_1:10648360-10648379	Msa0534910:CDS	45.0%
!	GAAGAGGGTATGATGATGAG+AGG	+	chr4_1:10648676-10648695	Msa0534910:CDS	45.0%
	AAGTCCATTCTTGAGGAAGC+CGG	-	chr4_1:10648919-10648938	None:intergenic	45.0%
!!	AGTTTCGCCGAGTTGATATC+TGG	+	chr4_1:10649034-10649053	Msa0534910:three_prime_UTR	45.0%
	TCTTGATTGGAAAACAGGGG+AGG	+	chr4_1:10649206-10649225	Msa0534910:three_prime_UTR	45.0%
	CTTGATTGGAAAACAGGGGA+GGG	+	chr4_1:10649207-10649226	Msa0534910:three_prime_UTR	45.0%
	TTGATTGGAAAACAGGGGAG+GGG	+	chr4_1:10649208-10649227	Msa0534910:three_prime_UTR	45.0%
	GTCGTCGTAAGGAAAAAGAG+TGG	-	chr4_1:10647689-10647708	None:intergenic	45.0%
	GAGATTGAAACGTCGTCGTA+AGG	-	chr4_1:10647700-10647719	None:intergenic	45.0%
	CTCATCTCTCCACAACAACA+AGG	+	chr4_1:10647744-10647763	Msa0534910:CDS	45.0%
	GATTCTGGGTGTGAAATCCA+TGG	-	chr4_1:10648028-10648047	None:intergenic	45.0%
	GAAATATCCCTGGAGGAAGA+AGG	+	chr4_1:10648303-10648322	Msa0534910:CDS	45.0%
	TGTCTTCATCTGCATCTGCA+TGG	+	chr4_1:10648360-10648379	Msa0534910:CDS	45.0%
!	GAAGAGGGTATGATGATGAG+AGG	+	chr4_1:10648676-10648695	Msa0534910:CDS	45.0%
	AAGTCCATTCTTGAGGAAGC+CGG	-	chr4_1:10648919-10648938	None:intergenic	45.0%
!!	AGTTTCGCCGAGTTGATATC+TGG	+	chr4_1:10649034-10649053	Msa0534910:three_prime_UTR	45.0%
	TCTTGATTGGAAAACAGGGG+AGG	+	chr4_1:10649206-10649225	Msa0534910:three_prime_UTR	45.0%
	CTTGATTGGAAAACAGGGGA+GGG	+	chr4_1:10649207-10649226	Msa0534910:three_prime_UTR	45.0%
	TTGATTGGAAAACAGGGGAG+GGG	+	chr4_1:10649208-10649227	Msa0534910:three_prime_UTR	45.0%
!!!	TAATTTTTATTATAAATATC+TGG	+	chr4_1:10647466-10647485	Msa0534910:five_prime_UTR	5.0%
!!!	AATTTTTATTATAAATATCT+GGG	+	chr4_1:10647467-10647486	Msa0534910:five_prime_UTR	5.0%
!!!	TAATTTTTATTATAAATATC+TGG	+	chr4_1:10647466-10647485	Msa0534910:five_prime_UTR	5.0%
!!!	AATTTTTATTATAAATATCT+GGG	+	chr4_1:10647467-10647486	Msa0534910:five_prime_UTR	5.0%
	AGCTACGCGAAGAGTTCAAG+TGG	+	chr4_1:10647864-10647883	Msa0534910:CDS	50.0%
	CAGTGTTCCTTCTTCCTCCA+GGG	-	chr4_1:10648313-10648332	None:intergenic	50.0%
	TCAGTGTTCCTTCTTCCTCC+AGG	-	chr4_1:10648314-10648333	None:intergenic	50.0%
	GCATGGAGTTCTGTGCAGAA+TGG	+	chr4_1:10648377-10648396	Msa0534910:CDS	50.0%
	AGATCCGGCTTCCTCAAGAA+TGG	+	chr4_1:10648912-10648931	Msa0534910:CDS	50.0%
	AGCTACGCGAAGAGTTCAAG+TGG	+	chr4_1:10647864-10647883	Msa0534910:CDS	50.0%
	CAGTGTTCCTTCTTCCTCCA+GGG	-	chr4_1:10648313-10648332	None:intergenic	50.0%
	TCAGTGTTCCTTCTTCCTCC+AGG	-	chr4_1:10648314-10648333	None:intergenic	50.0%
	GCATGGAGTTCTGTGCAGAA+TGG	+	chr4_1:10648377-10648396	Msa0534910:CDS	50.0%
	AGATCCGGCTTCCTCAAGAA+TGG	+	chr4_1:10648912-10648931	Msa0534910:CDS	50.0%
	AGCAGAACTTGCAGAGAGCG+AGG	+	chr4_1:10647904-10647923	Msa0534910:CDS	55.0%
	GATCTGCTACATGCAGCTGC+AGG	+	chr4_1:10647930-10647949	Msa0534910:CDS	55.0%
	GCAGTGGTTGAAGCAACGAG+AGG	+	chr4_1:10648238-10648257	Msa0534910:CDS	55.0%
	CAGAGGTGAACCGTGAGATC+CGG	+	chr4_1:10648897-10648916	Msa0534910:CDS	55.0%
	CTTGAGGAAGCCGGATCTCA+CGG	-	chr4_1:10648910-10648929	None:intergenic	55.0%
	AGCAGAACTTGCAGAGAGCG+AGG	+	chr4_1:10647904-10647923	Msa0534910:CDS	55.0%
	GATCTGCTACATGCAGCTGC+AGG	+	chr4_1:10647930-10647949	Msa0534910:CDS	55.0%
	GCAGTGGTTGAAGCAACGAG+AGG	+	chr4_1:10648238-10648257	Msa0534910:CDS	55.0%
	CAGAGGTGAACCGTGAGATC+CGG	+	chr4_1:10648897-10648916	Msa0534910:CDS	55.0%
	CTTGAGGAAGCCGGATCTCA+CGG	-	chr4_1:10648910-10648929	None:intergenic	55.0%
	CGTGAAGCAGCAGCTGACAG+AGG	+	chr4_1:10648880-10648899	Msa0534910:CDS	60.0%
	GGAAAACAGGGGAGGGGCAA+TGG	+	chr4_1:10649214-10649233	Msa0534910:three_prime_UTR	60.0%
	CGTGAAGCAGCAGCTGACAG+AGG	+	chr4_1:10648880-10648899	Msa0534910:CDS	60.0%
	GGAAAACAGGGGAGGGGCAA+TGG	+	chr4_1:10649214-10649233	Msa0534910:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	10647419	10649477	10647419	ID=Msa0534910;Name=Msa0534910
chr4_1	mRNA	10647419	10649477	10647419	ID=Msa0534910-mRNA-1;Parent=Msa0534910;Name=Msa0534910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=176\|1\|1\|1\|1\|1\|5\|534\|317
chr4_1	exon	10647419	10647765	10647419	ID=Msa0534910-mRNA-1:exon:3386;Parent=Msa0534910-mRNA-1
chr4_1	exon	10647846	10648100	10647846	ID=Msa0534910-mRNA-1:exon:3387;Parent=Msa0534910-mRNA-1
chr4_1	exon	10648221	10648515	10648221	ID=Msa0534910-mRNA-1:exon:3388;Parent=Msa0534910-mRNA-1
chr4_1	exon	10648620	10648748	10648620	ID=Msa0534910-mRNA-1:exon:3389;Parent=Msa0534910-mRNA-1
chr4_1	exon	10648840	10649477	10648840	ID=Msa0534910-mRNA-1:exon:3390;Parent=Msa0534910-mRNA-1
chr4_1	five_prime_UTR	10647419	10647594	10647419	ID=Msa0534910-mRNA-1:five_prime_utr;Parent=Msa0534910-mRNA-1
chr4_1	CDS	10647595	10647765	10647595	ID=Msa0534910-mRNA-1:cds;Parent=Msa0534910-mRNA-1
chr4_1	CDS	10647846	10648100	10647846	ID=Msa0534910-mRNA-1:cds;Parent=Msa0534910-mRNA-1
chr4_1	CDS	10648221	10648515	10648221	ID=Msa0534910-mRNA-1:cds;Parent=Msa0534910-mRNA-1
chr4_1	CDS	10648620	10648748	10648620	ID=Msa0534910-mRNA-1:cds;Parent=Msa0534910-mRNA-1
chr4_1	CDS	10648840	10648943	10648840	ID=Msa0534910-mRNA-1:cds;Parent=Msa0534910-mRNA-1
chr4_1	three_prime_UTR	10648944	10649477	10648944	ID=Msa0534910-mRNA-1:three_prime_utr;Parent=Msa0534910-mRNA-1

Gene Sequence

>Msa0534910

ATGGCTCATTCACTTTCTGCTCAGTTCTTAACCGAAGACGAAAAATCTTTCATTAATAAACTCTTCACAAACGACGCCGTTTCAAGTTCAACCACTCTTTTTCCTTACGACGACGTTTCAATCTCCGAGTTAACTCGTCAAATGACTCACTCATCTCTCCACAACAACAAGGTTGTTTTTGAGAATGGAAGCTACGCGAAGAGTTCAAGTGGAAACGACACCGTTTTGAAGCAGAACTTGCAGAGAGCGAGGTTTGATCTGCTACATGCAGCTGCAGGAGAAGATGAAAGAGTTCATCGAGTTAAGTACGATGAAGAAGAAGCTTTTTACGGTTTTACCCCTAAAAAGCACCATGGATTTCACACCCAGAATCATCATCATCAACATGCAATTTCTCAGAAACAGTTACAGTTTCAAATCGCTCAATTTGAGATGTTGAAGAAGCAGTGGTTGAAGCAACGAGAGGAATTTGCTCGTGCTATTTCACAGAGAAGAAGTGGAAATTACCGAAATATCCCTGGAGGAAGAAGGAACACTGAAACGGTTTTTCAGAGTAATGTTGGTTTGTCTTCATCTGCATCTGCATGGAGTTCTGTGCAGAATGGAAGCAACAATAACAAAGCCGGATTTCCTGGAAACCCTAATTTGAGAAACGAAAGAAATGGTACTGGTGTTTTCTTGCCTCGTGTTGTTGATGTTACTGAATCAAGAAAAAATCCAGGTAGTAAAAATGTGATGGTTCCTGAAAGAGTTGTTCATGCTTTGAATCGTAAATTTGAAGAGGGTATGATGATGAGAGGTTACATGCAGCAGAAGAATCGTTTTTATGGAACTTCAAATTTTGAAAATGGTGTTGGGAGTGATTATGGATTTTCTCAGCAAAAGCGGAACGTGAAGCAGCAGCTGACAGAGGTGAACCGTGAGATCCGGCTTCCTCAAGAATGGACTTATTGA

Protein sequence

>Msa0534910

MAHSLSAQFLTEDEKSFINKLFTNDAVSSSTTLFPYDDVSISELTRQMTHSSLHNNKVVFENGSYAKSSSGNDTVLKQNLQRARFDLLHAAAGEDERVHRVKYDEEEAFYGFTPKKHHGFHTQNHHHQHAISQKQLQFQIAQFEMLKKQWLKQREEFARAISQRRSGNYRNIPGGRRNTETVFQSNVGLSSSASAWSSVQNGSNNNKAGFPGNPNLRNERNGTGVFLPRVVDVTESRKNPGSKNVMVPERVVHALNRKFEEGMMMRGYMQQKNRFYGTSNFENGVGSDYGFSQQKRNVKQQLTEVNREIRLPQEWTY*