AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270320 MtrunA17_Chr2g0277391 96.094 128 1 1 1 124 1 128 7.19e-84 241
Msa0270320 MtrunA17_Chr2g0297101 95.312 128 2 1 1 124 1 128 3.53e-83 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270320 AT4G15000.1 82.031 128 19 1 1 124 1 128 8.09e-72 211
Msa0270320 AT3G22230.1 82.031 128 19 1 1 124 1 128 1.41e-71 210
Msa0270320 AT4G15000.2 82.114 123 18 1 1 119 1 123 1.15e-68 203
Msa0270320 AT2G32220.1 76.562 128 26 1 1 124 1 128 3.48e-67 199

Find 30 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCTTCGAACCTCTTCT+TGG 0.194010 2_3:-1580672 None:intergenic
TACGGTCATTGCTTGGTTGC+AGG 0.251311 2_3:+1580447 Msa0270320:CDS
CACTCTGGATGTTGATTTGA+AGG 0.342388 2_3:+1580589 Msa0270320:CDS
AAGACTATCACCGCTTTGTT+TGG 0.370063 2_3:-1580354 None:intergenic
TTCGAAGAAAGGTTCAAAAC+TGG 0.371776 2_3:+1580683 Msa0270320:CDS
AGGACGTTACGCTGGCAAAA+AGG 0.377725 2_3:+1580380 Msa0270320:CDS
CACTGATGTTCTTCAGAGTA+AGG 0.400378 2_3:+1580622 Msa0270320:CDS
GGTTCAAAACTGGGAAGAAC+AGG 0.438118 2_3:+1580693 Msa0270320:CDS
TAAGAAGGTCACTGCTTTGA+AGG 0.444100 2_3:+1580646 Msa0270320:CDS
TGCAAAGAAATCGCGTGTTA+AGG 0.450525 2_3:+1580520 Msa0270320:CDS
ACGGTCATTGCTTGGTTGCA+GGG 0.480537 2_3:+1580448 Msa0270320:CDS
CCAAGAAGAGGTTCGAAGAA+AGG 0.486021 2_3:+1580672 Msa0270320:CDS
GGAACCCGTGAACGTGCTTA+CGG 0.489757 2_3:+1580429 Msa0270320:CDS
AATGACCGTAAGCACGTTCA+CGG 0.519577 2_3:-1580434 None:intergenic
AGGTTAGTGACAAATTTATG+AGG 0.521790 2_3:+1581800 Msa0270320:intron
TCTTCAGAGTAAGGATAAGA+AGG 0.568239 2_3:+1580631 Msa0270320:CDS
ACGTGCTTACGGTCATTGCT+TGG 0.573817 2_3:+1580440 Msa0270320:CDS
TATGCCAACACGTTACACTC+TGG 0.586595 2_3:+1580574 Msa0270320:CDS
ATCGTGAAGAACTTTGATGA+TGG 0.589985 2_3:+1580408 Msa0270320:CDS
TCGAAGAAAGGTTCAAAACT+GGG 0.592072 2_3:+1580684 Msa0270320:CDS
GTCTTACAAGGACGTTACGC+TGG 0.605916 2_3:+1580372 Msa0270320:CDS
ATGACCGTAAGCACGTTCAC+GGG 0.610478 2_3:-1580433 None:intergenic
GATCAAGAAGTATCCAGCTA+AGG 0.616060 2_3:+1580470 Msa0270320:CDS
CTTTGAAGGAGGCCAAGAAG+AGG 0.631043 2_3:+1580660 Msa0270320:CDS
ACATCCAGAGTGTAACGTGT+TGG 0.631735 2_3:-1580578 None:intergenic
GAAGGTCACTGCTTTGAAGG+AGG 0.643354 2_3:+1580649 Msa0270320:CDS
AAAGCGGTGATAGTCTTACA+AGG 0.664690 2_3:+1580360 Msa0270320:CDS
TCTGGATGTTGATTTGAAGG+AGG 0.686222 2_3:+1580592 Msa0270320:CDS
CTTACTCTGAAGAACATCAG+TGG 0.694910 2_3:-1580621 None:intergenic
ATTCTTGAAGCCAAACAAAG+CGG 0.699139 2_3:+1580344 Msa0270320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! NNNNNNNNGTTATATTGTAT+TGG + chr2_3:1581564-1581583 Msa0270320:intron 10.0%
!! NNNNNNNGTTATATTGTATT+GGG + chr2_3:1581565-1581584 Msa0270320:intron 10.0%
!! NNNNNNNNGTTATATTGTAT+TGG + chr2_3:1581564-1581583 Msa0270320:intron 10.0%
!! NNNNNNNGTTATATTGTATT+GGG + chr2_3:1581565-1581584 Msa0270320:intron 10.0%
!!! TTGAATTTTGTTTGATTATT+TGG + chr2_3:1580771-1580790 Msa0270320:intron 15.0%
!!! AATTTGATAATGCTTTTTTT+TGG + chr2_3:1581014-1581033 Msa0270320:intron 15.0%
!! NNNNNNNGAAATAATCCTAT+TGG - chr2_3:1581459-1581478 None:intergenic 15.0%
!!! GCTTTTTATATTTTGTTATA+CGG - chr2_3:1581731-1581750 None:intergenic 15.0%
!!! ACAAAATATAAAAAGCTTTT+TGG + chr2_3:1581735-1581754 Msa0270320:intron 15.0%
!!! TTGAATTTTGTTTGATTATT+TGG + chr2_3:1580771-1580790 Msa0270320:intron 15.0%
!!! AATTTGATAATGCTTTTTTT+TGG + chr2_3:1581014-1581033 Msa0270320:intron 15.0%
!! NNNNNNNGAAATAATCCTAT+TGG - chr2_3:1581459-1581478 None:intergenic 15.0%
!!! GCTTTTTATATTTTGTTATA+CGG - chr2_3:1581731-1581750 None:intergenic 15.0%
!!! ACAAAATATAAAAAGCTTTT+TGG + chr2_3:1581735-1581754 Msa0270320:intron 15.0%
!! CTTATATAATTAAGTTACAG+TGG - chr2_3:1581149-1581168 None:intergenic 20.0%
!! TCAATTGAGTATTAAACAAA+TGG - chr2_3:1581381-1581400 None:intergenic 20.0%
!! ATTACTCCAAATTAAACAAA+TGG - chr2_3:1581426-1581445 None:intergenic 20.0%
!!! TTGAAATGAGTCATTTATTT+TGG + chr2_3:1581611-1581630 Msa0270320:intron 20.0%
!!! TGAAATGAGTCATTTATTTT+GGG + chr2_3:1581612-1581631 Msa0270320:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG + chr2_3:1581634-1581653 Msa0270320:intron 20.0%
!! CTTATATAATTAAGTTACAG+TGG - chr2_3:1581149-1581168 None:intergenic 20.0%
!! TCAATTGAGTATTAAACAAA+TGG - chr2_3:1581381-1581400 None:intergenic 20.0%
!! ATTACTCCAAATTAAACAAA+TGG - chr2_3:1581426-1581445 None:intergenic 20.0%
!!! TTGAAATGAGTCATTTATTT+TGG + chr2_3:1581611-1581630 Msa0270320:intron 20.0%
!!! TGAAATGAGTCATTTATTTT+GGG + chr2_3:1581612-1581631 Msa0270320:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG + chr2_3:1581634-1581653 Msa0270320:intron 20.0%
!! ATTTTGTACTTTGGATTTGT+TGG + chr2_3:1580810-1580829 Msa0270320:intron 25.0%
!! ATAATTCCAATATCTGAGAT+AGG + chr2_3:1580900-1580919 Msa0270320:intron 25.0%
!!! TTAAGCAAATTGGGTTTTTT+TGG + chr2_3:1580949-1580968 Msa0270320:intron 25.0%
! GTGTTGAATATTGTGTAATT+TGG + chr2_3:1581055-1581074 Msa0270320:intron 25.0%
!!! AATCCCTAATTTTAGCTATT+TGG + chr2_3:1581087-1581106 Msa0270320:intron 25.0%
!!! ATCCCTAATTTTAGCTATTT+GGG + chr2_3:1581088-1581107 Msa0270320:intron 25.0%
! TACCCAAATAGCTAAAATTA+GGG - chr2_3:1581093-1581112 None:intergenic 25.0%
! TTACCCAAATAGCTAAAATT+AGG - chr2_3:1581094-1581113 None:intergenic 25.0%
!!! ATTTTAGCTATTTGGGTAAT+TGG + chr2_3:1581095-1581114 Msa0270320:intron 25.0%
!! TTTTGGCCATTTGTTTAATT+TGG + chr2_3:1581417-1581436 Msa0270320:intron 25.0%
! NNNNGAAATAATCCTATTGG+AGG - chr2_3:1581456-1581475 None:intergenic 25.0%
!! ATTTTGTACTTTGGATTTGT+TGG + chr2_3:1580810-1580829 Msa0270320:intron 25.0%
!! ATAATTCCAATATCTGAGAT+AGG + chr2_3:1580900-1580919 Msa0270320:intron 25.0%
!!! TTAAGCAAATTGGGTTTTTT+TGG + chr2_3:1580949-1580968 Msa0270320:intron 25.0%
! GTGTTGAATATTGTGTAATT+TGG + chr2_3:1581055-1581074 Msa0270320:intron 25.0%
!!! AATCCCTAATTTTAGCTATT+TGG + chr2_3:1581087-1581106 Msa0270320:intron 25.0%
!!! ATCCCTAATTTTAGCTATTT+GGG + chr2_3:1581088-1581107 Msa0270320:intron 25.0%
! TACCCAAATAGCTAAAATTA+GGG - chr2_3:1581093-1581112 None:intergenic 25.0%
! TTACCCAAATAGCTAAAATT+AGG - chr2_3:1581094-1581113 None:intergenic 25.0%
!!! ATTTTAGCTATTTGGGTAAT+TGG + chr2_3:1581095-1581114 Msa0270320:intron 25.0%
!! TTTTGGCCATTTGTTTAATT+TGG + chr2_3:1581417-1581436 Msa0270320:intron 25.0%
! NNNNGAAATAATCCTATTGG+AGG - chr2_3:1581456-1581475 None:intergenic 25.0%
TATTTGGATCTTTAGTGTTC+TGG + chr2_3:1580787-1580806 Msa0270320:intron 30.0%
GTTAAACCTATCTCAGATAT+TGG - chr2_3:1580909-1580928 None:intergenic 30.0%
! TGAGCAACTTTTAAGCAAAT+TGG + chr2_3:1580939-1580958 Msa0270320:intron 30.0%
! GAGCAACTTTTAAGCAAATT+GGG + chr2_3:1580940-1580959 Msa0270320:intron 30.0%
!!! CAAATTGGGTTTTTTTGGAA+TGG + chr2_3:1580954-1580973 Msa0270320:intron 30.0%
!! GAATGGTTTAGGTTTTCTAA+TGG + chr2_3:1580971-1580990 Msa0270320:intron 30.0%
!! TTTAGGTTTTCTAATGGTTC+AGG + chr2_3:1580977-1580996 Msa0270320:intron 30.0%
!!! GTAATTGGTTTTAGAGTGTT+CGG + chr2_3:1581110-1581129 Msa0270320:intron 30.0%
!!! TAATTGGTTTTAGAGTGTTC+GGG + chr2_3:1581111-1581130 Msa0270320:intron 30.0%
TATAGCAACAACAACAACAA+GGG - chr2_3:1581200-1581219 None:intergenic 30.0%
TACGAAAATTACTACAACGA+AGG - chr2_3:1581247-1581266 None:intergenic 30.0%
!!! AACACTGATTTTGTGTGTTT+TGG + chr2_3:1581355-1581374 Msa0270320:intron 30.0%
!!! ACAACACTGATTTTGTGTTT+TGG + chr2_3:1581400-1581419 Msa0270320:intron 30.0%
GTAATTTGAATTCCTCCAAT+AGG + chr2_3:1581441-1581460 Msa0270320:intron 30.0%
AGAAAATAGGTCAGTTATTC+CGG + chr2_3:1581647-1581666 Msa0270320:intron 30.0%
GTAGTATATGATTCCAAGTT+TGG - chr2_3:1581686-1581705 None:intergenic 30.0%
!! AAAGCTTTTTGGTGATTATG+AGG + chr2_3:1581746-1581765 Msa0270320:intron 30.0%
!!! TAGCATGTGTTTTTTTGATC+AGG + chr2_3:1581780-1581799 Msa0270320:intron 30.0%
TATTTGGATCTTTAGTGTTC+TGG + chr2_3:1580787-1580806 Msa0270320:intron 30.0%
GTTAAACCTATCTCAGATAT+TGG - chr2_3:1580909-1580928 None:intergenic 30.0%
! TGAGCAACTTTTAAGCAAAT+TGG + chr2_3:1580939-1580958 Msa0270320:intron 30.0%
! GAGCAACTTTTAAGCAAATT+GGG + chr2_3:1580940-1580959 Msa0270320:intron 30.0%
!!! CAAATTGGGTTTTTTTGGAA+TGG + chr2_3:1580954-1580973 Msa0270320:intron 30.0%
!! GAATGGTTTAGGTTTTCTAA+TGG + chr2_3:1580971-1580990 Msa0270320:intron 30.0%
!! TTTAGGTTTTCTAATGGTTC+AGG + chr2_3:1580977-1580996 Msa0270320:intron 30.0%
!!! GTAATTGGTTTTAGAGTGTT+CGG + chr2_3:1581110-1581129 Msa0270320:intron 30.0%
!!! TAATTGGTTTTAGAGTGTTC+GGG + chr2_3:1581111-1581130 Msa0270320:intron 30.0%
TATAGCAACAACAACAACAA+GGG - chr2_3:1581200-1581219 None:intergenic 30.0%
TACGAAAATTACTACAACGA+AGG - chr2_3:1581247-1581266 None:intergenic 30.0%
!!! AACACTGATTTTGTGTGTTT+TGG + chr2_3:1581355-1581374 Msa0270320:intron 30.0%
!!! ACAACACTGATTTTGTGTTT+TGG + chr2_3:1581400-1581419 Msa0270320:intron 30.0%
GTAATTTGAATTCCTCCAAT+AGG + chr2_3:1581441-1581460 Msa0270320:intron 30.0%
AGAAAATAGGTCAGTTATTC+CGG + chr2_3:1581647-1581666 Msa0270320:intron 30.0%
GTAGTATATGATTCCAAGTT+TGG - chr2_3:1581686-1581705 None:intergenic 30.0%
!! AAAGCTTTTTGGTGATTATG+AGG + chr2_3:1581746-1581765 Msa0270320:intron 30.0%
!!! TAGCATGTGTTTTTTTGATC+AGG + chr2_3:1581780-1581799 Msa0270320:intron 30.0%
ATTCTTGAAGCCAAACAAAG+CGG + chr2_3:1580344-1580363 Msa0270320:CDS 35.0%
ATCGTGAAGAACTTTGATGA+TGG + chr2_3:1580408-1580427 Msa0270320:CDS 35.0%
! TGTTAAGGCTTTTGTGAAGT+TGG + chr2_3:1580535-1580554 Msa0270320:CDS 35.0%
TCTTCAGAGTAAGGATAAGA+AGG + chr2_3:1580631-1580650 Msa0270320:CDS 35.0%
TTCGAAGAAAGGTTCAAAAC+TGG + chr2_3:1580683-1580702 Msa0270320:CDS 35.0%
TCGAAGAAAGGTTCAAAACT+GGG + chr2_3:1580684-1580703 Msa0270320:CDS 35.0%
!! GTGTTCTGGATTTTGTACTT+TGG + chr2_3:1580801-1580820 Msa0270320:intron 35.0%
!! GATTTGTTGGTACTGTTGTT+TGG + chr2_3:1580823-1580842 Msa0270320:intron 35.0%
!!! GGGTTTTTTTGGAATGGTTT+AGG + chr2_3:1580960-1580979 Msa0270320:intron 35.0%
!! TTAGAGTGTTCGGGTTTTAA+TGG + chr2_3:1581120-1581139 Msa0270320:intron 35.0%
GTATAGCAACAACAACAACA+AGG - chr2_3:1581201-1581220 None:intergenic 35.0%
GTGTTGAATATCGTCTACAT+TGG + chr2_3:1581267-1581286 Msa0270320:intron 35.0%
CAGTATATGATGTAGCTTAG+AGG + chr2_3:1581290-1581309 Msa0270320:intron 35.0%
GAAAATAGGTCAGTTATTCC+GGG + chr2_3:1581648-1581667 Msa0270320:intron 35.0%
!! TTTTGGTGATTATGAGGTGT+TGG + chr2_3:1581752-1581771 Msa0270320:intron 35.0%
ATTCTTGAAGCCAAACAAAG+CGG + chr2_3:1580344-1580363 Msa0270320:CDS 35.0%
ATCGTGAAGAACTTTGATGA+TGG + chr2_3:1580408-1580427 Msa0270320:CDS 35.0%
! TGTTAAGGCTTTTGTGAAGT+TGG + chr2_3:1580535-1580554 Msa0270320:CDS 35.0%
TCTTCAGAGTAAGGATAAGA+AGG + chr2_3:1580631-1580650 Msa0270320:CDS 35.0%
TTCGAAGAAAGGTTCAAAAC+TGG + chr2_3:1580683-1580702 Msa0270320:CDS 35.0%
TCGAAGAAAGGTTCAAAACT+GGG + chr2_3:1580684-1580703 Msa0270320:CDS 35.0%
!! GTGTTCTGGATTTTGTACTT+TGG + chr2_3:1580801-1580820 Msa0270320:intron 35.0%
!! GATTTGTTGGTACTGTTGTT+TGG + chr2_3:1580823-1580842 Msa0270320:intron 35.0%
!!! GGGTTTTTTTGGAATGGTTT+AGG + chr2_3:1580960-1580979 Msa0270320:intron 35.0%
!! TTAGAGTGTTCGGGTTTTAA+TGG + chr2_3:1581120-1581139 Msa0270320:intron 35.0%
GTATAGCAACAACAACAACA+AGG - chr2_3:1581201-1581220 None:intergenic 35.0%
GTGTTGAATATCGTCTACAT+TGG + chr2_3:1581267-1581286 Msa0270320:intron 35.0%
CAGTATATGATGTAGCTTAG+AGG + chr2_3:1581290-1581309 Msa0270320:intron 35.0%
GAAAATAGGTCAGTTATTCC+GGG + chr2_3:1581648-1581667 Msa0270320:intron 35.0%
!! TTTTGGTGATTATGAGGTGT+TGG + chr2_3:1581752-1581771 Msa0270320:intron 35.0%
! AAGACTATCACCGCTTTGTT+TGG - chr2_3:1580357-1580376 None:intergenic 40.0%
! AAAGCGGTGATAGTCTTACA+AGG + chr2_3:1580360-1580379 Msa0270320:CDS 40.0%
!! GATCAAGAAGTATCCAGCTA+AGG + chr2_3:1580470-1580489 Msa0270320:CDS 40.0%
ATCCAGCTAAGGTGATCAAA+AGG + chr2_3:1580481-1580500 Msa0270320:intron 40.0%
! ATCCTTTTGATCACCTTAGC+TGG - chr2_3:1580486-1580505 None:intergenic 40.0%
TGCAAAGAAATCGCGTGTTA+AGG + chr2_3:1580520-1580539 Msa0270320:CDS 40.0%
!! CACTCTGGATGTTGATTTGA+AGG + chr2_3:1580589-1580608 Msa0270320:CDS 40.0%
!! TCTGGATGTTGATTTGAAGG+AGG + chr2_3:1580592-1580611 Msa0270320:CDS 40.0%
! CTTACTCTGAAGAACATCAG+TGG - chr2_3:1580624-1580643 None:intergenic 40.0%
CACTGATGTTCTTCAGAGTA+AGG + chr2_3:1580622-1580641 Msa0270320:CDS 40.0%
TAAGAAGGTCACTGCTTTGA+AGG + chr2_3:1580646-1580665 Msa0270320:CDS 40.0%
!! TTGATTTGTCCAATCACCAG+CGG + chr2_3:1581171-1581190 Msa0270320:intron 40.0%
! AAGACTATCACCGCTTTGTT+TGG - chr2_3:1580357-1580376 None:intergenic 40.0%
! AAAGCGGTGATAGTCTTACA+AGG + chr2_3:1580360-1580379 Msa0270320:CDS 40.0%
!! GATCAAGAAGTATCCAGCTA+AGG + chr2_3:1580470-1580489 Msa0270320:CDS 40.0%
ATCCAGCTAAGGTGATCAAA+AGG + chr2_3:1580481-1580500 Msa0270320:intron 40.0%
! ATCCTTTTGATCACCTTAGC+TGG - chr2_3:1580486-1580505 None:intergenic 40.0%
TGCAAAGAAATCGCGTGTTA+AGG + chr2_3:1580520-1580539 Msa0270320:CDS 40.0%
!! CACTCTGGATGTTGATTTGA+AGG + chr2_3:1580589-1580608 Msa0270320:CDS 40.0%
!! TCTGGATGTTGATTTGAAGG+AGG + chr2_3:1580592-1580611 Msa0270320:CDS 40.0%
! CTTACTCTGAAGAACATCAG+TGG - chr2_3:1580624-1580643 None:intergenic 40.0%
CACTGATGTTCTTCAGAGTA+AGG + chr2_3:1580622-1580641 Msa0270320:CDS 40.0%
TAAGAAGGTCACTGCTTTGA+AGG + chr2_3:1580646-1580665 Msa0270320:CDS 40.0%
!! TTGATTTGTCCAATCACCAG+CGG + chr2_3:1581171-1581190 Msa0270320:intron 40.0%
AATGACCGTAAGCACGTTCA+CGG - chr2_3:1580437-1580456 None:intergenic 45.0%
TATGCCAACACGTTACACTC+TGG + chr2_3:1580574-1580593 Msa0270320:CDS 45.0%
ACATCCAGAGTGTAACGTGT+TGG - chr2_3:1580581-1580600 None:intergenic 45.0%
CCTTTCTTCGAACCTCTTCT+TGG - chr2_3:1580675-1580694 None:intergenic 45.0%
CCAAGAAGAGGTTCGAAGAA+AGG + chr2_3:1580672-1580691 Msa0270320:CDS 45.0%
GGTTCAAAACTGGGAAGAAC+AGG + chr2_3:1580693-1580712 Msa0270320:CDS 45.0%
TCAAAACTGGGAAGAACAGG+TGG + chr2_3:1580696-1580715 Msa0270320:intron 45.0%
GCTAACTCAAAACCTGAGCT+TGG - chr2_3:1580729-1580748 None:intergenic 45.0%
ATAGGTCAGTTATTCCGGGA+CGG + chr2_3:1581652-1581671 Msa0270320:intron 45.0%
AATGACCGTAAGCACGTTCA+CGG - chr2_3:1580437-1580456 None:intergenic 45.0%
TATGCCAACACGTTACACTC+TGG + chr2_3:1580574-1580593 Msa0270320:CDS 45.0%
ACATCCAGAGTGTAACGTGT+TGG - chr2_3:1580581-1580600 None:intergenic 45.0%
CCTTTCTTCGAACCTCTTCT+TGG - chr2_3:1580675-1580694 None:intergenic 45.0%
CCAAGAAGAGGTTCGAAGAA+AGG + chr2_3:1580672-1580691 Msa0270320:CDS 45.0%
GGTTCAAAACTGGGAAGAAC+AGG + chr2_3:1580693-1580712 Msa0270320:CDS 45.0%
TCAAAACTGGGAAGAACAGG+TGG + chr2_3:1580696-1580715 Msa0270320:intron 45.0%
GCTAACTCAAAACCTGAGCT+TGG - chr2_3:1580729-1580748 None:intergenic 45.0%
ATAGGTCAGTTATTCCGGGA+CGG + chr2_3:1581652-1581671 Msa0270320:intron 45.0%
GTCTTACAAGGACGTTACGC+TGG + chr2_3:1580372-1580391 Msa0270320:CDS 50.0%
AGGACGTTACGCTGGCAAAA+AGG + chr2_3:1580380-1580399 Msa0270320:CDS 50.0%
ATGACCGTAAGCACGTTCAC+GGG - chr2_3:1580436-1580455 None:intergenic 50.0%
ACGTGCTTACGGTCATTGCT+TGG + chr2_3:1580440-1580459 Msa0270320:CDS 50.0%
TACGGTCATTGCTTGGTTGC+AGG + chr2_3:1580447-1580466 Msa0270320:CDS 50.0%
ACGGTCATTGCTTGGTTGCA+GGG + chr2_3:1580448-1580467 Msa0270320:CDS 50.0%
!! GAAGGTCACTGCTTTGAAGG+AGG + chr2_3:1580649-1580668 Msa0270320:CDS 50.0%
! CTTTGAAGGAGGCCAAGAAG+AGG + chr2_3:1580660-1580679 Msa0270320:CDS 50.0%
ACAACAACAAGGGATTCCGC+TGG - chr2_3:1581190-1581209 None:intergenic 50.0%
GTCTTACAAGGACGTTACGC+TGG + chr2_3:1580372-1580391 Msa0270320:CDS 50.0%
AGGACGTTACGCTGGCAAAA+AGG + chr2_3:1580380-1580399 Msa0270320:CDS 50.0%
ATGACCGTAAGCACGTTCAC+GGG - chr2_3:1580436-1580455 None:intergenic 50.0%
ACGTGCTTACGGTCATTGCT+TGG + chr2_3:1580440-1580459 Msa0270320:CDS 50.0%
TACGGTCATTGCTTGGTTGC+AGG + chr2_3:1580447-1580466 Msa0270320:CDS 50.0%
ACGGTCATTGCTTGGTTGCA+GGG + chr2_3:1580448-1580467 Msa0270320:CDS 50.0%
!! GAAGGTCACTGCTTTGAAGG+AGG + chr2_3:1580649-1580668 Msa0270320:CDS 50.0%
! CTTTGAAGGAGGCCAAGAAG+AGG + chr2_3:1580660-1580679 Msa0270320:CDS 50.0%
ACAACAACAAGGGATTCCGC+TGG - chr2_3:1581190-1581209 None:intergenic 50.0%
GGAACCCGTGAACGTGCTTA+CGG + chr2_3:1580429-1580448 Msa0270320:CDS 55.0%
GGTGGTTCTTCACCAAGCTC+AGG + chr2_3:1580714-1580733 Msa0270320:intron 55.0%
CAAGGGATTCCGCTGGTGAT+TGG - chr2_3:1581183-1581202 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr2_3:1581656-1581675 Msa0270320:intron 55.0%
!! GACGGAGGGAGTACCAAACT+TGG + chr2_3:1581670-1581689 Msa0270320:intron 55.0%
GGAACCCGTGAACGTGCTTA+CGG + chr2_3:1580429-1580448 Msa0270320:CDS 55.0%
GGTGGTTCTTCACCAAGCTC+AGG + chr2_3:1580714-1580733 Msa0270320:intron 55.0%
CAAGGGATTCCGCTGGTGAT+TGG - chr2_3:1581183-1581202 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr2_3:1581656-1581675 Msa0270320:intron 55.0%
!! GACGGAGGGAGTACCAAACT+TGG + chr2_3:1581670-1581689 Msa0270320:intron 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr2_3:1581655-1581674 Msa0270320:intron 60.0%
GTTTGGTACTCCCTCCGTCC+CGG - chr2_3:1581669-1581688 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr2_3:1581655-1581674 Msa0270320:intron 60.0%
GTTTGGTACTCCCTCCGTCC+CGG - chr2_3:1581669-1581688 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1580336 1581820 1580336 ID=Msa0270320;Name=Msa0270320
chr2_3 mRNA 1580336 1581820 1580336 ID=Msa0270320-mRNA-1;Parent=Msa0270320;Name=Msa0270320-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.66|1|1|3|0|128
chr2_3 exon 1580336 1580491 1580336 ID=Msa0270320-mRNA-1:exon:679;Parent=Msa0270320-mRNA-1
chr2_3 exon 1580503 1580714 1580503 ID=Msa0270320-mRNA-1:exon:680;Parent=Msa0270320-mRNA-1
chr2_3 exon 1581802 1581820 1581802 ID=Msa0270320-mRNA-1:exon:681;Parent=Msa0270320-mRNA-1
chr2_3 CDS 1580336 1580491 1580336 ID=Msa0270320-mRNA-1:cds;Parent=Msa0270320-mRNA-1
chr2_3 CDS 1580503 1580714 1580503 ID=Msa0270320-mRNA-1:cds;Parent=Msa0270320-mRNA-1
chr2_3 CDS 1581802 1581820 1581802 ID=Msa0270320-mRNA-1:cds;Parent=Msa0270320-mRNA-1
Gene Sequence

>Msa0270320

ATGGTGAAATTCTTGAAGCCAAACAAAGCGGTGATAGTCTTACAAGGACGTTACGCTGGCAAAAAGGCTGTCATCGTGAAGAACTTTGATGATGGAACCCGTGAACGTGCTTACGGTCATTGCTTGGTTGCAGGGATCAAGAAGTATCCAGCTAAGGATTCAGCTAAGAAAACTGCAAAGAAATCGCGTGTTAAGGCTTTTGTGAAGTTGGTTAACTATCAGCATCTTATGCCAACACGTTACACTCTGGATGTTGATTTGAAGGAGGTTGTTACCACTGATGTTCTTCAGAGTAAGGATAAGAAGGTCACTGCTTTGAAGGAGGCCAAGAAGAGGTTCGAAGAAAGGTTCAAAACTGGGAAGAACAGGTTAGTGACAAATTTATGA

Protein sequence

>Msa0270320

MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRERAYGHCLVAGIKKYPAKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRLVTNL*