AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350580 MtrunA17_Chr1g0182941 95.195 333 15 1 10 341 1 333 0.0 626
Msa1350580 MtrunA17_Chr7g0269121 33.588 262 153 3 93 333 183 444 1.27e-40 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350580 AT4G28740.1 64.706 306 96 6 38 341 52 347 1.09e-135 390
Msa1350580 AT1G02910.1 31.679 262 158 2 93 333 190 451 1.08e-29 118
Msa1350580 AT1G02910.2 35.616 146 94 0 93 238 190 335 4.68e-16 79.0

Find 108 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGCCTCTTGTGCATTCT+TGG 0.158034 tig0011622:-117263 None:intergenic
AATCTAATTCTTCTCAAATT+AGG 0.208211 tig0011622:+116083 Msa1350580:CDS
TCTCCTTAGTTGGATGATTA+TGG 0.247045 tig0011622:-115762 None:intergenic
AGAAGAATTAGATTGTTTAT+TGG 0.275303 tig0011622:-116074 None:intergenic
GGATGGAAATTTGCCTGCTT+TGG 0.289463 tig0011622:+117486 Msa1350580:CDS
AGGGCTGAACTCCTTGTATA+AGG 0.300210 tig0011622:-118231 None:intergenic
TGAGGTTCTATCTCCCTTTC+GGG 0.303519 tig0011622:+117048 Msa1350580:CDS
ATAGCAATCTCACAACTAAT+TGG 0.308590 tig0011622:+117127 Msa1350580:CDS
CTGCCATAGTCTCTTCCTTC+TGG 0.310842 tig0011622:-117551 None:intergenic
GTGAGGTTCTATCTCCCTTT+CGG 0.318617 tig0011622:+117047 Msa1350580:CDS
ACCTTTCACAGAAAGTCTTT+TGG 0.320758 tig0011622:+117432 Msa1350580:CDS
TGAGGAACTGAACATAAAAT+TGG 0.327285 tig0011622:-115972 None:intergenic
GCCGAGACCCTTGAGAATTT+CGG 0.328655 tig0011622:-117185 None:intergenic
AGTTTCACTTTCTTTGCATA+TGG 0.343844 tig0011622:+115818 Msa1350580:five_prime_UTR
ACCATGACATTAACAACGTT+TGG 0.352424 tig0011622:+115872 Msa1350580:CDS
GAGATGATCCTTCAAGAGTA+TGG 0.355797 tig0011622:-118189 None:intergenic
CTTTGTTGTCTCTAAAGTAT+AGG 0.356891 tig0011622:-117240 None:intergenic
GACCACTCGGAGGTGATAAC+TGG 0.362239 tig0011622:-117580 None:intergenic
ATTGGAGCAGTATCTTTGTT+TGG 0.363564 tig0011622:+117214 Msa1350580:CDS
TATCTCCCTTTCGGGCAGTT+AGG 0.390845 tig0011622:+117056 Msa1350580:CDS
AAATTTCCATCCGTTACTAA+TGG 0.393889 tig0011622:-117475 None:intergenic
CCAGTCCAGATTCCCTTTAC+CGG 0.394427 tig0011622:-118125 None:intergenic
TGCACAATTACCGCCGGTAA+AGG 0.394914 tig0011622:+118112 Msa1350580:CDS
CGCTTGGATGGTCGAGTTCG+TGG 0.397559 tig0011622:+118053 Msa1350580:CDS
GGGCTGAACTCCTTGTATAA+GGG 0.402759 tig0011622:-118230 None:intergenic
TACCGCCGGTAAAGGGAATC+TGG 0.408305 tig0011622:+118120 Msa1350580:CDS
CCACCAGAAGGAAGAGACTA+TGG 0.419742 tig0011622:+117548 Msa1350580:CDS
TTTGTTGCAAGTGCTTCTCT+CGG 0.428816 tig0011622:+117097 Msa1350580:CDS
GCACAATTACCGCCGGTAAA+GGG 0.429086 tig0011622:+118113 Msa1350580:CDS
AACTAATGAAACATTCACTT+TGG 0.432993 tig0011622:+115843 Msa1350580:exon
ATGAAACATGGAGGTGGTGT+TGG 0.435397 tig0011622:-115935 None:intergenic
TAAAATCATATATTTAGCTT+AGG 0.436104 tig0011622:+118338 Msa1350580:three_prime_UTR
TAGTGGGAACAGAAGATCTT+TGG 0.442205 tig0011622:-116036 None:intergenic
GACTCGGTTATGAAGGATGC+TGG 0.449765 tig0011622:-117394 None:intergenic
ATCTGGACTGGCCTACTAGA+TGG 0.452164 tig0011622:+118137 Msa1350580:CDS
TCCGAAATTCTCAAGGGTCT+CGG 0.462525 tig0011622:+117184 Msa1350580:CDS
TGAAACATGGAGGTGGTGTT+GGG 0.464979 tig0011622:-115934 None:intergenic
CACACATCTATCTCCTTAGT+TGG 0.466055 tig0011622:-115772 None:intergenic
GGAAGCAGAACAAACAATAG+TGG 0.475113 tig0011622:-116053 None:intergenic
TCAGCTCTACAGCCAGGATA+AGG 0.479607 tig0011622:+117023 Msa1350580:intron
TCCAAAAGACTTTCTGTGAA+AGG 0.484014 tig0011622:-117433 None:intergenic
AGGTGTATCCTCTGAGTCTC+CGG 0.484946 tig0011622:+117718 Msa1350580:CDS
CTTAAAAGACTCGGTTATGA+AGG 0.489119 tig0011622:-117401 None:intergenic
TTGTTGCAAGTGCTTCTCTC+GGG 0.495810 tig0011622:+117098 Msa1350580:CDS
ACGTTGTTAATGTCATGGTT+TGG 0.496411 tig0011622:-115868 None:intergenic
TTTGATAGAATATGCACTGT+AGG 0.500953 tig0011622:-118292 None:intergenic
TGTTCTTCAGCTCTACAGCC+AGG 0.501870 tig0011622:+117017 Msa1350580:intron
GGTTATGAAGGATGCTGGGC+CGG 0.510643 tig0011622:-117389 None:intergenic
ACCAAACGTTGTTAATGTCA+TGG 0.511914 tig0011622:-115873 None:intergenic
CGAGTTCGTGGAAGTGGTGT+TGG 0.518858 tig0011622:+118065 Msa1350580:CDS
GAGAATTTCGGAAACTTCTG+AGG 0.522492 tig0011622:-117173 None:intergenic
TAGGTATCTATCTCTACGCT+TGG 0.524939 tig0011622:+118037 Msa1350580:intron
ATACCATAATCATCCAACTA+AGG 0.525161 tig0011622:+115759 Msa1350580:five_prime_UTR
TCAGTCTCAAATTCCAAAGC+AGG 0.526917 tig0011622:-117499 None:intergenic
TAGAACCTCACTCCTTATCC+TGG 0.528279 tig0011622:-117035 None:intergenic
AAAATAAAAGAAATAAACCT+AGG 0.529090 tig0011622:-118251 None:intergenic
AAGGGTCTCGGCATTGACAT+TGG 0.530691 tig0011622:+117196 Msa1350580:CDS
GGAGATAGATGTGTGACCTC+AGG 0.532806 tig0011622:+115780 Msa1350580:five_prime_UTR
GTTGTTCCATTAGTAACGGA+TGG 0.533720 tig0011622:+117469 Msa1350580:CDS
GAACATCCTAACTGCCCGAA+AGG 0.535459 tig0011622:-117062 None:intergenic
GGCCTACTAGATGGCATGGA+TGG 0.537031 tig0011622:+118146 Msa1350580:CDS
AACATCCTAACTGCCCGAAA+GGG 0.537118 tig0011622:-117061 None:intergenic
AGTTCCTCAAGACTCAGTTA+TGG 0.539436 tig0011622:+115986 Msa1350580:CDS
GATGGTCGAGTTCGTGGAAG+TGG 0.539978 tig0011622:+118059 Msa1350580:CDS
GAAACTTCTGAGGCTCGTGA+TGG 0.541777 tig0011622:-117163 None:intergenic
TGCCATCCATGCCATCTAGT+AGG 0.546029 tig0011622:-118148 None:intergenic
CCAAGAATGCACAAGAGGCT+CGG 0.547108 tig0011622:+117263 Msa1350580:CDS
CCATAGTCTCTTCCTTCTGG+TGG 0.547663 tig0011622:-117548 None:intergenic
CCGGTAAAGGGAATCTGGAC+TGG 0.548399 tig0011622:+118125 Msa1350580:CDS
TCTTGTTGTTCCATTAGTAA+CGG 0.550298 tig0011622:+117465 Msa1350580:CDS
TTGATAGAATATGCACTGTA+GGG 0.557054 tig0011622:-118291 None:intergenic
GACTGGCCTACTAGATGGCA+TGG 0.557924 tig0011622:+118142 Msa1350580:CDS
CAAAGCCAAGAATGCACAAG+AGG 0.560157 tig0011622:+117258 Msa1350580:CDS
GGCTGAACTCCTTGTATAAG+GGG 0.560264 tig0011622:-118229 None:intergenic
GCTCGACTTGTAATATGTGC+CGG 0.560267 tig0011622:+117370 Msa1350580:CDS
AAGGAAGAGACTATGGCAGC+TGG 0.561092 tig0011622:+117555 Msa1350580:CDS
AGAAGTTTCCGAAATTCTCA+AGG 0.563263 tig0011622:+117177 Msa1350580:CDS
TTCACTGCGCTTAAAAGACT+CGG 0.565546 tig0011622:-117410 None:intergenic
TATCTATCTCTACGCTTGGA+TGG 0.570017 tig0011622:+118041 Msa1350580:CDS
CGATGATTGTGGATGAAACA+TGG 0.572334 tig0011622:-115947 None:intergenic
TATACAAGGAGTTCAGCCCT+AGG 0.577639 tig0011622:+118234 Msa1350580:three_prime_UTR
GAAGCAGAACAAACAATAGT+GGG 0.578711 tig0011622:-116052 None:intergenic
TAAAATTGGTACGATGATTG+TGG 0.584880 tig0011622:-115958 None:intergenic
GTGGTGTTGGTTATCCACCT+TGG 0.585801 tig0011622:+118078 Msa1350580:CDS
CAAAGCAACTTGCCACCAGA+AGG 0.586550 tig0011622:+117536 Msa1350580:CDS
ATTACTGTTAACTCATTGAG+AGG 0.589948 tig0011622:+117343 Msa1350580:CDS
ACTCGGTTATGAAGGATGCT+GGG 0.605181 tig0011622:-117393 None:intergenic
AGAGGCTCGGCTCTCAAGAG+AGG 0.606803 tig0011622:+117276 Msa1350580:CDS
AAATAAAAGAAATAAACCTA+GGG 0.617898 tig0011622:-118250 None:intergenic
GAAGTTTCCGAAATTCTCAA+GGG 0.624267 tig0011622:+117178 Msa1350580:CDS
GTCCAGATTCCCTTTACCGG+CGG 0.627179 tig0011622:-118122 None:intergenic
AGAAGCACTTGCAACAAAAG+CGG 0.630503 tig0011622:-117092 None:intergenic
TGAGACTGAAGAGACTGATG+AGG 0.632957 tig0011622:+117513 Msa1350580:CDS
GAGGTGGTGTTGGGAGAGTG+AGG 0.635330 tig0011622:-115925 None:intergenic
TTTCGTTGCACAATTACCGC+CGG 0.637674 tig0011622:+118106 Msa1350580:CDS
TACTTACACCGGAGACTCAG+AGG 0.639799 tig0011622:-117726 None:intergenic
ATAGACATACTCGGACCACT+CGG 0.641066 tig0011622:-117593 None:intergenic
TTGTGGATGAAACATGGAGG+TGG 0.644703 tig0011622:-115941 None:intergenic
TACAGCCAGGATAAGGAGTG+AGG 0.659492 tig0011622:+117030 Msa1350580:CDS
TGTGCAACGAAAGCATTCCA+AGG 0.663502 tig0011622:-118095 None:intergenic
GACATACTCGGACCACTCGG+AGG 0.696435 tig0011622:-117590 None:intergenic
TGAACTAACTGATCATCCTG+AGG 0.696649 tig0011622:-115796 None:intergenic
CTGTAGGGAAACAAAACCAG+AGG 0.697117 tig0011622:-118276 None:intergenic
GCTGAACTCCTTGTATAAGG+GGG 0.708386 tig0011622:-118228 None:intergenic
GTGACCATAACTGAGTCTTG+AGG 0.719771 tig0011622:-115990 None:intergenic
CTCCAGTTATCACCTCCGAG+TGG 0.727203 tig0011622:+117578 Msa1350580:CDS
GCAACGAAAGCATTCCAAGG+TGG 0.729632 tig0011622:-118092 None:intergenic
TGATTGTGGATGAAACATGG+AGG 0.830631 tig0011622:-115944 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAAATTTAGTTGATTTT+TGG - tig0011622:116444-116463 None:intergenic 15.0%
!!! ATTTTCTATTATTCAAACTT+AGG - tig0011622:117880-117899 None:intergenic 15.0%
!! AAATAAAAGAAATAAACCTA+GGG - tig0011622:118253-118272 None:intergenic 15.0%
!! AAAATAAAAGAAATAAACCT+AGG - tig0011622:118254-118273 None:intergenic 15.0%
!!! TAAAATCATATATTTAGCTT+AGG + tig0011622:118338-118357 Msa1350580:three_prime_UTR 15.0%
!! AGAAGAATTAGATTGTTTAT+TGG - tig0011622:116077-116096 None:intergenic 20.0%
!! AATCTAATTCTTCTCAAATT+AGG + tig0011622:116083-116102 Msa1350580:CDS 20.0%
!!! ATTTTTCACAAAACAAAAAG+AGG - tig0011622:116123-116142 None:intergenic 20.0%
!!! TTGAGGTAATTGTTTTAATA+TGG + tig0011622:116193-116212 Msa1350580:intron 20.0%
!!! AAAATTTAGTTGATTTTTGG+TGG - tig0011622:116441-116460 None:intergenic 20.0%
!! GAGGAAAAAATTAAAACAAT+TGG - tig0011622:117657-117676 None:intergenic 20.0%
!!! TATCTGTTTTCTTTTAAACA+AGG + tig0011622:117988-118007 Msa1350580:intron 20.0%
!!! ATCTGTTTTCTTTTAAACAA+GGG + tig0011622:117989-118008 Msa1350580:intron 20.0%
! AACTAATGAAACATTCACTT+TGG + tig0011622:115843-115862 Msa1350580:exon 25.0%
!! TGTTTTGTGAAAAATGCTTT+TGG + tig0011622:116128-116147 Msa1350580:intron 25.0%
! AGTGCAAATAATGTTATGTA+TGG - tig0011622:116341-116360 None:intergenic 25.0%
!!! AGAAGCATTGTTTTTTTCAT+TGG + tig0011622:116554-116573 Msa1350580:intron 25.0%
!!! CATGTTTTAGATTTAGTTTG+TGG + tig0011622:116606-116625 Msa1350580:intron 25.0%
! AAAGATATGAAAATCGCAAA+CGG + tig0011622:116696-116715 Msa1350580:intron 25.0%
! GTTAGATGAACAAAAAAAGA+TGG + tig0011622:117694-117713 Msa1350580:CDS 25.0%
!!! TTAACATTTTAGCACCAATA+TGG - tig0011622:117756-117775 None:intergenic 25.0%
! TTCTTTAGCTGAAAAATTAG+AGG - tig0011622:117793-117812 None:intergenic 25.0%
! AAGAAAACAGATACGAAAAA+CGG - tig0011622:117981-118000 None:intergenic 25.0%
!!! ATTTCTTTTATTTTTGCCTC+TGG + tig0011622:118260-118279 Msa1350580:three_prime_UTR 25.0%
ATACCATAATCATCCAACTA+AGG + tig0011622:115759-115778 Msa1350580:five_prime_UTR 30.0%
AGTTTCACTTTCTTTGCATA+TGG + tig0011622:115818-115837 Msa1350580:five_prime_UTR 30.0%
TAAAATTGGTACGATGATTG+TGG - tig0011622:115961-115980 None:intergenic 30.0%
TGAGGAACTGAACATAAAAT+TGG - tig0011622:115975-115994 None:intergenic 30.0%
! TTTTATCAGAATTCGAACCT+CGG - tig0011622:116259-116278 None:intergenic 30.0%
CTAGAGTAGCATTCAATTAA+TGG + tig0011622:116415-116434 Msa1350580:intron 30.0%
! ATCTAAAACATGTACACCAA+TGG - tig0011622:116598-116617 None:intergenic 30.0%
! TTTATATCTGCAGTTTTGCT+TGG + tig0011622:116821-116840 Msa1350580:intron 30.0%
! CTGCATTCATTTGATTTCAA+AGG - tig0011622:116888-116907 None:intergenic 30.0%
AAAGAAGCTTTGCATAAAGA+GGG - tig0011622:116942-116961 None:intergenic 30.0%
ATAGCAATCTCACAACTAAT+TGG + tig0011622:117127-117146 Msa1350580:CDS 30.0%
!! CTTTGTTGTCTCTAAAGTAT+AGG - tig0011622:117243-117262 None:intergenic 30.0%
ATTACTGTTAACTCATTGAG+AGG + tig0011622:117343-117362 Msa1350580:CDS 30.0%
!! TCTTGTTGTTCCATTAGTAA+CGG + tig0011622:117465-117484 Msa1350580:CDS 30.0%
AAATTTCCATCCGTTACTAA+TGG - tig0011622:117478-117497 None:intergenic 30.0%
!!! TTTTCCTCGTCTTGTTTAAT+AGG + tig0011622:117669-117688 Msa1350580:intron 30.0%
AATATGGATAGTACTTACAC+CGG - tig0011622:117740-117759 None:intergenic 30.0%
GCTAAAGAAAATATACACGA+TGG + tig0011622:117804-117823 Msa1350580:intron 30.0%
GAATACACAAGATTTGACAA+CGG - tig0011622:117951-117970 None:intergenic 30.0%
TTCTAACAGTTTCAATGTGT+AGG + tig0011622:118018-118037 Msa1350580:intron 30.0%
TTGATAGAATATGCACTGTA+GGG - tig0011622:118294-118313 None:intergenic 30.0%
TTTGATAGAATATGCACTGT+AGG - tig0011622:118295-118314 None:intergenic 30.0%
TCTCCTTAGTTGGATGATTA+TGG - tig0011622:115765-115784 None:intergenic 35.0%
ACGTTGTTAATGTCATGGTT+TGG - tig0011622:115871-115890 None:intergenic 35.0%
ACCATGACATTAACAACGTT+TGG + tig0011622:115872-115891 Msa1350580:CDS 35.0%
ACCAAACGTTGTTAATGTCA+TGG - tig0011622:115876-115895 None:intergenic 35.0%
GAAGCAGAACAAACAATAGT+GGG - tig0011622:116055-116074 None:intergenic 35.0%
TTTGTTACACTGAACTGTTG+AGG + tig0011622:116176-116195 Msa1350580:intron 35.0%
TTAATATGGTTCCATTGACG+AGG + tig0011622:116207-116226 Msa1350580:intron 35.0%
TAATATGGTTCCATTGACGA+GGG + tig0011622:116208-116227 Msa1350580:intron 35.0%
GAGGTAACACAAAATGTAGT+AGG - tig0011622:116486-116505 None:intergenic 35.0%
AGACATGAGAACCATAAGAA+GGG - tig0011622:116510-116529 None:intergenic 35.0%
TAACACACGGTATTTGATCA+CGG + tig0011622:116720-116739 Msa1350580:intron 35.0%
AAGAAGCTTTGCATAAAGAG+GGG - tig0011622:116941-116960 None:intergenic 35.0%
GAAAGAAGCTTTGCATAAAG+AGG - tig0011622:116943-116962 None:intergenic 35.0%
AGAAGTTTCCGAAATTCTCA+AGG + tig0011622:117177-117196 Msa1350580:CDS 35.0%
GAAGTTTCCGAAATTCTCAA+GGG + tig0011622:117178-117197 Msa1350580:CDS 35.0%
ATTGGAGCAGTATCTTTGTT+TGG + tig0011622:117214-117233 Msa1350580:CDS 35.0%
! CTTAAAAGACTCGGTTATGA+AGG - tig0011622:117404-117423 None:intergenic 35.0%
! ACCTTTCACAGAAAGTCTTT+TGG + tig0011622:117432-117451 Msa1350580:CDS 35.0%
TCCAAAAGACTTTCTGTGAA+AGG - tig0011622:117436-117455 None:intergenic 35.0%
TGTGTTGTCATAGACATACT+CGG - tig0011622:117605-117624 None:intergenic 35.0%
GATGAACAAAAAAAGATGGC+AGG + tig0011622:117698-117717 Msa1350580:CDS 35.0%
GGTGTAAGTACTATCCATAT+TGG + tig0011622:117739-117758 Msa1350580:intron 35.0%
! GTTCTTTTCCATACTCTTGA+AGG + tig0011622:118181-118200 Msa1350580:three_prime_UTR 35.0%
CACACATCTATCTCCTTAGT+TGG - tig0011622:115775-115794 None:intergenic 40.0%
TGAACTAACTGATCATCCTG+AGG - tig0011622:115799-115818 None:intergenic 40.0%
TGATTGTGGATGAAACATGG+AGG - tig0011622:115947-115966 None:intergenic 40.0%
CGATGATTGTGGATGAAACA+TGG - tig0011622:115950-115969 None:intergenic 40.0%
AGTTCCTCAAGACTCAGTTA+TGG + tig0011622:115986-116005 Msa1350580:CDS 40.0%
TAGTGGGAACAGAAGATCTT+TGG - tig0011622:116039-116058 None:intergenic 40.0%
GGAAGCAGAACAAACAATAG+TGG - tig0011622:116056-116075 None:intergenic 40.0%
TGGATAGCTCAATTGGTTGA+AGG + tig0011622:116232-116251 Msa1350580:intron 40.0%
GGATAGCTCAATTGGTTGAA+GGG + tig0011622:116233-116252 Msa1350580:intron 40.0%
CAGACATGAGAACCATAAGA+AGG - tig0011622:116511-116530 None:intergenic 40.0%
CTTCTTATGGTTCTCATGTC+TGG + tig0011622:116509-116528 Msa1350580:intron 40.0%
GTCTGGCAAAGAATGAGATT+AGG + tig0011622:116526-116545 Msa1350580:intron 40.0%
CCAATGGTAAGAGAACAAGA+TGG - tig0011622:116582-116601 None:intergenic 40.0%
CCATCTTGTTCTCTTACCAT+TGG + tig0011622:116579-116598 Msa1350580:intron 40.0%
AATCGCAAACGGATAACACA+CGG + tig0011622:116707-116726 Msa1350580:intron 40.0%
! TTCCCTTCCTTTTCTGCTTT+TGG + tig0011622:116851-116870 Msa1350580:intron 40.0%
!! TCCCTTCCTTTTCTGCTTTT+GGG + tig0011622:116852-116871 Msa1350580:intron 40.0%
!! AGAAGCACTTGCAACAAAAG+CGG - tig0011622:117095-117114 None:intergenic 40.0%
TTTGTTGCAAGTGCTTCTCT+CGG + tig0011622:117097-117116 Msa1350580:CDS 40.0%
GAGAATTTCGGAAACTTCTG+AGG - tig0011622:117176-117195 None:intergenic 40.0%
TTCACTGCGCTTAAAAGACT+CGG - tig0011622:117413-117432 None:intergenic 40.0%
! ACAGAAAGTCTTTTGGACAG+AGG + tig0011622:117439-117458 Msa1350580:CDS 40.0%
! GTTGTTCCATTAGTAACGGA+TGG + tig0011622:117469-117488 Msa1350580:CDS 40.0%
TCAGTCTCAAATTCCAAAGC+AGG - tig0011622:117502-117521 None:intergenic 40.0%
!! TCCTCGTCTTGTTTAATAGG+TGG + tig0011622:117672-117691 Msa1350580:intron 40.0%
ACCACCTATTAAACAAGACG+AGG - tig0011622:117676-117695 None:intergenic 40.0%
TAGGTATCTATCTCTACGCT+TGG + tig0011622:118037-118056 Msa1350580:intron 40.0%
TATCTATCTCTACGCTTGGA+TGG + tig0011622:118041-118060 Msa1350580:CDS 40.0%
GAGATGATCCTTCAAGAGTA+TGG - tig0011622:118192-118211 None:intergenic 40.0%
TGAAACATGGAGGTGGTGTT+GGG - tig0011622:115937-115956 None:intergenic 45.0%
ATGAAACATGGAGGTGGTGT+TGG - tig0011622:115938-115957 None:intergenic 45.0%
TTGTGGATGAAACATGGAGG+TGG - tig0011622:115944-115963 None:intergenic 45.0%
GTGACCATAACTGAGTCTTG+AGG - tig0011622:115993-116012 None:intergenic 45.0%
GTGTTACCTCACCCTTCTTA+TGG + tig0011622:116496-116515 Msa1350580:intron 45.0%
TGAGAACCATAAGAAGGGTG+AGG - tig0011622:116505-116524 None:intergenic 45.0%
ACGGTATTTGATCACGGAGT+TGG + tig0011622:116726-116745 Msa1350580:intron 45.0%
CGGTATTTGATCACGGAGTT+GGG + tig0011622:116727-116746 Msa1350580:intron 45.0%
CCCCAAAAGCAGAAAAGGAA+GGG - tig0011622:116856-116875 None:intergenic 45.0%
!! CCCTTCCTTTTCTGCTTTTG+GGG + tig0011622:116853-116872 Msa1350580:intron 45.0%
CTTTGCCCCAAAAGCAGAAA+AGG - tig0011622:116861-116880 None:intergenic 45.0%
! GATTGATGAAGCATCACTGC+AGG - tig0011622:116981-117000 None:intergenic 45.0%
TAGAACCTCACTCCTTATCC+TGG - tig0011622:117038-117057 None:intergenic 45.0%
GTGAGGTTCTATCTCCCTTT+CGG + tig0011622:117047-117066 Msa1350580:CDS 45.0%
TGAGGTTCTATCTCCCTTTC+GGG + tig0011622:117048-117067 Msa1350580:CDS 45.0%
AACATCCTAACTGCCCGAAA+GGG - tig0011622:117064-117083 None:intergenic 45.0%
TTGTTGCAAGTGCTTCTCTC+GGG + tig0011622:117098-117117 Msa1350580:CDS 45.0%
TCCGAAATTCTCAAGGGTCT+CGG + tig0011622:117184-117203 Msa1350580:CDS 45.0%
CAAAGCCAAGAATGCACAAG+AGG + tig0011622:117258-117277 Msa1350580:CDS 45.0%
! GCTCGACTTGTAATATGTGC+CGG + tig0011622:117370-117389 Msa1350580:CDS 45.0%
ACTCGGTTATGAAGGATGCT+GGG - tig0011622:117396-117415 None:intergenic 45.0%
GGATGGAAATTTGCCTGCTT+TGG + tig0011622:117486-117505 Msa1350580:CDS 45.0%
TGAGACTGAAGAGACTGATG+AGG + tig0011622:117513-117532 Msa1350580:CDS 45.0%
ATAGACATACTCGGACCACT+CGG - tig0011622:117596-117615 None:intergenic 45.0%
!! TGTGCAACGAAAGCATTCCA+AGG - tig0011622:118098-118117 None:intergenic 45.0%
TTTCGTTGCACAATTACCGC+CGG + tig0011622:118106-118125 Msa1350580:CDS 45.0%
ATACTCCTCCCCCTTATACA+AGG + tig0011622:118220-118239 Msa1350580:three_prime_UTR 45.0%
GCTGAACTCCTTGTATAAGG+GGG - tig0011622:118231-118250 None:intergenic 45.0%
GGCTGAACTCCTTGTATAAG+GGG - tig0011622:118232-118251 None:intergenic 45.0%
GGGCTGAACTCCTTGTATAA+GGG - tig0011622:118233-118252 None:intergenic 45.0%
AGGGCTGAACTCCTTGTATA+AGG - tig0011622:118234-118253 None:intergenic 45.0%
TATACAAGGAGTTCAGCCCT+AGG + tig0011622:118234-118253 Msa1350580:three_prime_UTR 45.0%
CTGTAGGGAAACAAAACCAG+AGG - tig0011622:118279-118298 None:intergenic 45.0%
GGAGATAGATGTGTGACCTC+AGG + tig0011622:115780-115799 Msa1350580:five_prime_UTR 50.0%
ATGGTTCCATTGACGAGGGT+TGG + tig0011622:116212-116231 Msa1350580:intron 50.0%
AGCTATCCAACCCTCGTCAA+TGG - tig0011622:116221-116240 None:intergenic 50.0%
CGAGGGTTGGATAGCTCAAT+TGG + tig0011622:116225-116244 Msa1350580:intron 50.0%
TGTGCTCAAATCTCCGACTG+CGG + tig0011622:116755-116774 Msa1350580:intron 50.0%
GCCCCAAAAGCAGAAAAGGA+AGG - tig0011622:116857-116876 None:intergenic 50.0%
TGTTCTTCAGCTCTACAGCC+AGG + tig0011622:117017-117036 Msa1350580:intron 50.0%
TCAGCTCTACAGCCAGGATA+AGG + tig0011622:117023-117042 Msa1350580:intron 50.0%
TACAGCCAGGATAAGGAGTG+AGG + tig0011622:117030-117049 Msa1350580:CDS 50.0%
TATCTCCCTTTCGGGCAGTT+AGG + tig0011622:117056-117075 Msa1350580:CDS 50.0%
GAACATCCTAACTGCCCGAA+AGG - tig0011622:117065-117084 None:intergenic 50.0%
!! GAAACTTCTGAGGCTCGTGA+TGG - tig0011622:117166-117185 None:intergenic 50.0%
GCCGAGACCCTTGAGAATTT+CGG - tig0011622:117188-117207 None:intergenic 50.0%
!! AAGGGTCTCGGCATTGACAT+TGG + tig0011622:117196-117215 Msa1350580:CDS 50.0%
CCAAGAATGCACAAGAGGCT+CGG + tig0011622:117263-117282 Msa1350580:CDS 50.0%
! GACTCGGTTATGAAGGATGC+TGG - tig0011622:117397-117416 None:intergenic 50.0%
CAAAGCAACTTGCCACCAGA+AGG + tig0011622:117536-117555 Msa1350580:CDS 50.0%
CCATAGTCTCTTCCTTCTGG+TGG - tig0011622:117551-117570 None:intergenic 50.0%
CCACCAGAAGGAAGAGACTA+TGG + tig0011622:117548-117567 Msa1350580:CDS 50.0%
CTGCCATAGTCTCTTCCTTC+TGG - tig0011622:117554-117573 None:intergenic 50.0%
AAGGAAGAGACTATGGCAGC+TGG + tig0011622:117555-117574 Msa1350580:CDS 50.0%
AGGTGTATCCTCTGAGTCTC+CGG + tig0011622:117718-117737 Msa1350580:CDS 50.0%
TACTTACACCGGAGACTCAG+AGG - tig0011622:117729-117748 None:intergenic 50.0%
CACTGCAGCCACTATGTAGT+CGG + tig0011622:117900-117919 Msa1350580:intron 50.0%
CTTCGTCTCCGACTACATAG+TGG - tig0011622:117911-117930 None:intergenic 50.0%
!! GTGGTGTTGGTTATCCACCT+TGG + tig0011622:118078-118097 Msa1350580:CDS 50.0%
!! GCAACGAAAGCATTCCAAGG+TGG - tig0011622:118095-118114 None:intergenic 50.0%
TGCACAATTACCGCCGGTAA+AGG + tig0011622:118112-118131 Msa1350580:CDS 50.0%
GCACAATTACCGCCGGTAAA+GGG + tig0011622:118113-118132 Msa1350580:CDS 50.0%
CCAGTCCAGATTCCCTTTAC+CGG - tig0011622:118128-118147 None:intergenic 50.0%
!! ATCTGGACTGGCCTACTAGA+TGG + tig0011622:118137-118156 Msa1350580:CDS 50.0%
TGCCATCCATGCCATCTAGT+AGG - tig0011622:118151-118170 None:intergenic 50.0%
GAACTCCTTGTATAAGGGGG+AGG - tig0011622:118228-118247 None:intergenic 50.0%
CTCAATTGGTTGAAGGGCCG+AGG + tig0011622:116239-116258 Msa1350580:intron 55.0%
TCAAATCTCCGACTGCGGAG+CGG + tig0011622:116760-116779 Msa1350580:intron 55.0%
CCGAGCCTCTTGTGCATTCT+TGG - tig0011622:117266-117285 None:intergenic 55.0%
GGTTATGAAGGATGCTGGGC+CGG - tig0011622:117392-117411 None:intergenic 55.0%
CTCCAGTTATCACCTCCGAG+TGG + tig0011622:117578-117597 Msa1350580:CDS 55.0%
GACCACTCGGAGGTGATAAC+TGG - tig0011622:117583-117602 None:intergenic 55.0%
GTCGGAGACGAAGACACAGT+TGG + tig0011622:117918-117937 Msa1350580:intron 55.0%
GATGGTCGAGTTCGTGGAAG+TGG + tig0011622:118059-118078 Msa1350580:CDS 55.0%
CGAGTTCGTGGAAGTGGTGT+TGG + tig0011622:118065-118084 Msa1350580:CDS 55.0%
TACCGCCGGTAAAGGGAATC+TGG + tig0011622:118120-118139 Msa1350580:CDS 55.0%
GTCCAGATTCCCTTTACCGG+CGG - tig0011622:118125-118144 None:intergenic 55.0%
CCGGTAAAGGGAATCTGGAC+TGG + tig0011622:118125-118144 Msa1350580:CDS 55.0%
!! GACTGGCCTACTAGATGGCA+TGG + tig0011622:118142-118161 Msa1350580:CDS 55.0%
GGCCTACTAGATGGCATGGA+TGG + tig0011622:118146-118165 Msa1350580:CDS 55.0%
! GAGGTGGTGTTGGGAGAGTG+AGG - tig0011622:115928-115947 None:intergenic 60.0%
TATGCAGACCGCTCCGCAGT+CGG - tig0011622:116771-116790 None:intergenic 60.0%
AGAGGCTCGGCTCTCAAGAG+AGG + tig0011622:117276-117295 Msa1350580:CDS 60.0%
GACATACTCGGACCACTCGG+AGG - tig0011622:117593-117612 None:intergenic 60.0%
CGCTTGGATGGTCGAGTTCG+TGG + tig0011622:118053-118072 Msa1350580:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0011622 gene 115751 118505 115751 ID=Msa1350580;Name=Msa1350580
tig0011622 mRNA 115751 118505 115751 ID=Msa1350580-mRNA-1;Parent=Msa1350580;Name=Msa1350580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=97|1|1|1|1|1|4|327|341
tig0011622 exon 115751 116104 115751 ID=Msa1350580-mRNA-1:exon:7429;Parent=Msa1350580-mRNA-1
tig0011622 exon 117027 117605 117027 ID=Msa1350580-mRNA-1:exon:7430;Parent=Msa1350580-mRNA-1
tig0011622 exon 117691 117741 117691 ID=Msa1350580-mRNA-1:exon:7431;Parent=Msa1350580-mRNA-1
tig0011622 exon 118040 118505 118040 ID=Msa1350580-mRNA-1:exon:7432;Parent=Msa1350580-mRNA-1
tig0011622 five_prime_UTR 115751 115847 115751 ID=Msa1350580-mRNA-1:five_prime_utr;Parent=Msa1350580-mRNA-1
tig0011622 CDS 115848 116104 115848 ID=Msa1350580-mRNA-1:cds;Parent=Msa1350580-mRNA-1
tig0011622 CDS 117027 117605 117027 ID=Msa1350580-mRNA-1:cds;Parent=Msa1350580-mRNA-1
tig0011622 CDS 117691 117741 117691 ID=Msa1350580-mRNA-1:cds;Parent=Msa1350580-mRNA-1
tig0011622 CDS 118040 118178 118040 ID=Msa1350580-mRNA-1:cds;Parent=Msa1350580-mRNA-1
tig0011622 three_prime_UTR 118179 118505 118179 ID=Msa1350580-mRNA-1:three_prime_utr;Parent=Msa1350580-mRNA-1
Gene Sequence

>Msa1350580

ATGAAACATTCACTTTGGAACCAAACCATGACATTAACAACGTTTGGTTCTACTTCTGCTAACTCTAACACTTTGTTCCTCACTCTCCCAACACCACCTCCATGTTTCATCCACAATCATCGTACCAATTTTATGTTCAGTTCCTCAAGACTCAGTTATGGTCACACTCACACTCTTCACTATTCTCACCAAAGATCTTCTGTTCCCACTATTGTTTGTTCTGCTTCCAATAAACAATCTAATTCTTCTCAAATTAGCTCTACAGCCAGGATAAGGAGTGAGGTTCTATCTCCCTTTCGGGCAGTTAGGATGTTCTTTTACACCGCTTTTGTTGCAAGTGCTTCTCTCGGGACACTCATAGCAATCTCACAACTAATTGGTGCACTGTCTAATCCATCACGAGCCTCAGAAGTTTCCGAAATTCTCAAGGGTCTCGGCATTGACATTGGAGCAGTATCTTTGTTTGGTTTCCTATACTTTAGAGACAACAAAGCCAAGAATGCACAAGAGGCTCGGCTCTCAAGAGAGGAATTTTTGTCAAATCTTAAGCTACGTGTGAGCGAGAAGAAGATCATTACTGTTAACTCATTGAGAGGAATTGCTCGACTTGTAATATGTGCCGGCCCAGCATCCTTCATAACCGAGTCTTTTAAGCGCAGTGAACCTTTCACAGAAAGTCTTTTGGACAGAGGAGTTCTTGTTGTTCCATTAGTAACGGATGGAAATTTGCCTGCTTTGGAATTTGAGACTGAAGAGACTGATGAGGCAAAGCAACTTGCCACCAGAAGGAAGAGACTATGGCAGCTGGCTCCAGTTATCACCTCCGAGTGGTCCGAGTGGTTAGATGAACAAAAAAAGATGGCAGGTGTATCCTCTGAGTCTCCGGTGTATCTATCTCTACGCTTGGATGGTCGAGTTCGTGGAAGTGGTGTTGGTTATCCACCTTGGAATGCTTTCGTTGCACAATTACCGCCGGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGCAGAGTTTAG

Protein sequence

>Msa1350580

MKHSLWNQTMTLTTFGSTSANSNTLFLTLPTPPPCFIHNHRTNFMFSSSRLSYGHTHTLHYSHQRSSVPTIVCSASNKQSNSSQISSTARIRSEVLSPFRAVRMFFYTAFVASASLGTLIAISQLIGALSNPSRASEVSEILKGLGIDIGAVSLFGFLYFRDNKAKNAQEARLSREEFLSNLKLRVSEKKIITVNSLRGIARLVICAGPASFITESFKRSEPFTESLLDRGVLVVPLVTDGNLPALEFETEETDEAKQLATRRKRLWQLAPVITSEWSEWLDEQKKMAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDGRV*