AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1088000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1088000 MtrunA17_Chr5g0418001 94.884 215 8 2 1 215 1 212 2.62e-149 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1088000 AT5G43750.1 62.255 204 73 2 12 215 13 212 4.24e-89 261

Find 58 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAATTTCAGGAACATTT+TGG 0.115202 7_3:-781181 Msa1088000:intron
CTTCACCTTCATTGAAAGTA+TGG 0.219255 7_3:+781547 None:intergenic
GTTTGCTATAGAATAGAAAT+AGG 0.233160 7_3:+780190 None:intergenic
TTCCCACCAGCCATTGCTGC+TGG 0.238546 7_3:-780705 Msa1088000:CDS
TGGGATTTCAATGACAAATA+TGG 0.271183 7_3:-780401 Msa1088000:CDS
CTTTCCATGTTGTATATTTG+AGG 0.297169 7_3:+780470 None:intergenic
GAATGCCATTAGTGCGAAAT+TGG 0.318148 7_3:+781707 None:intergenic
CTAATGCAGGGCTTATTTCA+TGG 0.328399 7_3:-780731 Msa1088000:intron
GTTGACCAATTTCGCACTAA+TGG 0.350257 7_3:-781712 Msa1088000:CDS
GGTCAACAGGATCTTCATTA+AGG 0.351255 7_3:+781728 None:intergenic
ACTATAATTCCATGAGCATA+TGG 0.355011 7_3:-780421 Msa1088000:CDS
TTTGAGTATGGAATATTTGA+TGG 0.360719 7_3:-781573 Msa1088000:CDS
CCAACACCACTCAACTTTCA+TGG 0.373078 7_3:-781826 Msa1088000:CDS
ACAAAATTCTTGTTGAATGC+TGG 0.374097 7_3:-781772 Msa1088000:CDS
TTATAGGAAGAATTTGAGTA+TGG 0.374124 7_3:-781585 Msa1088000:intron
ATGACAAATATGGAGACCTT+TGG 0.379641 7_3:-780391 Msa1088000:CDS
TGGGGTATTCTTCGATGTTC+CGG 0.405466 7_3:-780685 Msa1088000:intron
TGACAAATATGGAGACCTTT+GGG 0.407790 7_3:-780390 Msa1088000:CDS
CTTAAATATAATGAATATGA+AGG 0.409139 7_3:-780280 Msa1088000:three_prime_UTR
TCCCACCAGCCATTGCTGCT+GGG 0.411279 7_3:-780704 Msa1088000:CDS
TCAAAGTGGTGAGGTTGATC+AGG 0.412034 7_3:+780494 None:intergenic
TTTGCTATAGAATAGAAATA+GGG 0.431324 7_3:+780191 None:intergenic
GAGTACTTGTTCATTGGAGC+AGG 0.451279 7_3:-780557 Msa1088000:CDS
TTAGTGCGAAATTGGTCAAC+AGG 0.452985 7_3:+781715 None:intergenic
CCCACCAGCCATTGCTGCTG+GGG 0.474226 7_3:-780703 Msa1088000:CDS
CAAATATACAACATGGAAAG+AGG 0.518390 7_3:-780467 Msa1088000:CDS
GAGTTTGGATGAAGTGATGA+TGG 0.519240 7_3:+781870 None:intergenic
CTATAATTCCATGAGCATAT+GGG 0.524970 7_3:-780420 Msa1088000:CDS
CCATGAAAGTTGAGTGGTGT+TGG 0.531670 7_3:+781826 None:intergenic
ATTGAAATCCCATATGCTCA+TGG 0.535585 7_3:+780412 None:intergenic
GGTCACCATACTTTCAATGA+AGG 0.543716 7_3:-781552 Msa1088000:CDS
ACAGGATCTTCATTAAGGTC+AGG 0.545810 7_3:+781733 None:intergenic
GAGTGGTGTTGGAGATGAGA+AGG 0.548650 7_3:+781837 None:intergenic
CGCCATGTGTCAGACTTGGT+TGG 0.553256 7_3:+781921 None:intergenic
AATACCCCAGCAGCAATGGC+TGG 0.556419 7_3:+780699 None:intergenic
GAAGAATACCCCAGCAGCAA+TGG 0.556648 7_3:+780695 None:intergenic
AACATACCTTGAAATCCAGT+GGG 0.557528 7_3:+781122 None:intergenic
AATGAAGGTGAAGAAAAGAA+AGG 0.563141 7_3:-781537 Msa1088000:intron
CCCCAGCAGCAATGGCTGGT+GGG 0.565163 7_3:+780703 None:intergenic
ACCCCAGCAGCAATGGCTGG+TGG 0.569943 7_3:+780702 None:intergenic
ATTTGAGGTTCAAAGTGGTG+AGG 0.601318 7_3:+780485 None:intergenic
GGGAGGGACAAGTGAGAGTG+AGG 0.610541 7_3:+781891 None:intergenic
CAGTTGCGTGGTGATAAAAG+TGG 0.613381 7_3:-781964 None:intergenic
AAGGATGACATAATAGCAGT+AGG 0.616111 7_3:-781149 Msa1088000:CDS
ATAGCGCCATGTGTCAGACT+TGG 0.620326 7_3:+781917 None:intergenic
TGGATGAAGTGATGATGGGA+GGG 0.623001 7_3:+781875 None:intergenic
AGTACTTGTTCATTGGAGCA+GGG 0.628749 7_3:-780556 Msa1088000:CDS
AAACATACCTTGAAATCCAG+TGG 0.629247 7_3:+781121 None:intergenic
TCTTGATAGTAAAATCCCAA+AGG 0.630483 7_3:+780375 None:intergenic
TTGGATGAAGTGATGATGGG+AGG 0.636746 7_3:+781874 None:intergenic
TGTATATTTGAGGTTCAAAG+TGG 0.644225 7_3:+780480 None:intergenic
AGTTTGGATGAAGTGATGAT+GGG 0.668199 7_3:+781871 None:intergenic
TGAACCTCAAATATACAACA+TGG 0.679208 7_3:-780474 Msa1088000:CDS
CATACCTTGAAATCCAGTGG+GGG 0.685937 7_3:+781124 None:intergenic
AACCAACCAAGTCTGACACA+TGG 0.687944 7_3:-781923 Msa1088000:exon
ATACCTTGAAATCCAGTGGG+GGG 0.705939 7_3:+781125 None:intergenic
ACATACCTTGAAATCCAGTG+GGG 0.724590 7_3:+781123 None:intergenic
AATATGCCATGAAAGTTGAG+TGG 0.727294 7_3:+781820 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATGAAAAAAATAC+AGG + chr7_3:780407-780426 None:intergenic 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG - chr7_3:780695-780714 Msa1088000:CDS 10.0%
!! TATATATATGAAAAAAATAC+AGG + chr7_3:780407-780426 None:intergenic 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG - chr7_3:780695-780714 Msa1088000:CDS 10.0%
!!! TCAATCATTTTGTTTTTTAA+TGG - chr7_3:780624-780643 Msa1088000:intron 15.0%
!! ATTAGAATCAAAATTAGAAT+CGG + chr7_3:781340-781359 None:intergenic 15.0%
!! CTTAAATATAATGAATATGA+AGG - chr7_3:781806-781825 Msa1088000:CDS 15.0%
!!! TCAATCATTTTGTTTTTTAA+TGG - chr7_3:780624-780643 Msa1088000:intron 15.0%
!! ATTAGAATCAAAATTAGAAT+CGG + chr7_3:781340-781359 None:intergenic 15.0%
!! CTTAAATATAATGAATATGA+AGG - chr7_3:781806-781825 Msa1088000:CDS 15.0%
!! ATATATGAAAAAAATACAGG+TGG + chr7_3:780404-780423 None:intergenic 20.0%
!! TTGTAATACAAGTTAGAAAA+TGG + chr7_3:780999-781018 None:intergenic 20.0%
!!! TAGTTAACATTTAGAATTAC+CGG + chr7_3:781423-781442 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr7_3:781720-781739 Msa1088000:CDS 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG + chr7_3:781898-781917 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG + chr7_3:781943-781962 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG - chr7_3:781946-781965 Msa1088000:five_prime_UTR 20.0%
!! ATATATGAAAAAAATACAGG+TGG + chr7_3:780404-780423 None:intergenic 20.0%
!! TTGTAATACAAGTTAGAAAA+TGG + chr7_3:780999-781018 None:intergenic 20.0%
!!! TAGTTAACATTTAGAATTAC+CGG + chr7_3:781423-781442 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr7_3:781720-781739 Msa1088000:CDS 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG + chr7_3:781898-781917 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG + chr7_3:781943-781962 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG - chr7_3:781946-781965 Msa1088000:five_prime_UTR 20.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG - chr7_3:780485-780504 Msa1088000:CDS 25.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr7_3:780501-780520 Msa1088000:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr7_3:780513-780532 Msa1088000:CDS 25.0%
!!! AATGTTGATTTTATTGTCGA+AGG - chr7_3:780745-780764 Msa1088000:intron 25.0%
!! ATCAATTTCAGGAACATTTT+GGG - chr7_3:780906-780925 Msa1088000:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG + chr7_3:781313-781332 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG - chr7_3:781342-781361 Msa1088000:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG - chr7_3:781343-781362 Msa1088000:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr7_3:781505-781524 Msa1088000:intron 25.0%
!! TGTATTTTGCATAATTGAGA+TGG - chr7_3:781564-781583 Msa1088000:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG + chr7_3:781899-781918 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG + chr7_3:781942-781961 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG + chr7_3:781944-781963 None:intergenic 25.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG - chr7_3:780485-780504 Msa1088000:CDS 25.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr7_3:780501-780520 Msa1088000:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr7_3:780513-780532 Msa1088000:CDS 25.0%
!!! AATGTTGATTTTATTGTCGA+AGG - chr7_3:780745-780764 Msa1088000:intron 25.0%
!! ATCAATTTCAGGAACATTTT+GGG - chr7_3:780906-780925 Msa1088000:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG + chr7_3:781313-781332 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG - chr7_3:781342-781361 Msa1088000:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG - chr7_3:781343-781362 Msa1088000:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr7_3:781505-781524 Msa1088000:intron 25.0%
!! TGTATTTTGCATAATTGAGA+TGG - chr7_3:781564-781583 Msa1088000:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG + chr7_3:781899-781918 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG + chr7_3:781942-781961 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG + chr7_3:781944-781963 None:intergenic 25.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr7_3:780297-780316 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr7_3:780314-780333 Msa1088000:three_prime_UTR 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr7_3:780549-780568 Msa1088000:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG - chr7_3:780640-780659 Msa1088000:intron 30.0%
TAGAAAAACATATACACGCT+TGG + chr7_3:780874-780893 None:intergenic 30.0%
CAAAGTTCATGATCAATTTC+AGG - chr7_3:780895-780914 Msa1088000:intron 30.0%
! GATCAATTTCAGGAACATTT+TGG - chr7_3:780905-780924 Msa1088000:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG - chr7_3:780907-780926 Msa1088000:intron 30.0%
ACAAGTTAGAAAATGGTACA+AGG + chr7_3:780992-781011 None:intergenic 30.0%
ATAGTCAAAATTGTGGTCAA+GGG + chr7_3:781306-781325 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG + chr7_3:781307-781326 None:intergenic 30.0%
CTCAATCTAGAAATCAATTG+AGG - chr7_3:781460-781479 Msa1088000:intron 30.0%
CTGAAACATACATTGTACTT+AGG + chr7_3:781506-781525 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr7_3:781504-781523 Msa1088000:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr7_3:781506-781525 Msa1088000:intron 30.0%
! TGTATATTTGAGGTTCAAAG+TGG + chr7_3:781609-781628 None:intergenic 30.0%
TGAACCTCAAATATACAACA+TGG - chr7_3:781612-781631 Msa1088000:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr7_3:781619-781638 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr7_3:781619-781638 Msa1088000:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr7_3:781665-781684 Msa1088000:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr7_3:781666-781685 Msa1088000:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr7_3:781685-781704 Msa1088000:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr7_3:781714-781733 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG - chr7_3:781778-781797 Msa1088000:CDS 30.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr7_3:780297-780316 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG - chr7_3:780314-780333 Msa1088000:three_prime_UTR 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr7_3:780549-780568 Msa1088000:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG - chr7_3:780640-780659 Msa1088000:intron 30.0%
TAGAAAAACATATACACGCT+TGG + chr7_3:780874-780893 None:intergenic 30.0%
CAAAGTTCATGATCAATTTC+AGG - chr7_3:780895-780914 Msa1088000:intron 30.0%
! GATCAATTTCAGGAACATTT+TGG - chr7_3:780905-780924 Msa1088000:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG - chr7_3:780907-780926 Msa1088000:intron 30.0%
ACAAGTTAGAAAATGGTACA+AGG + chr7_3:780992-781011 None:intergenic 30.0%
ATAGTCAAAATTGTGGTCAA+GGG + chr7_3:781306-781325 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG + chr7_3:781307-781326 None:intergenic 30.0%
CTCAATCTAGAAATCAATTG+AGG - chr7_3:781460-781479 Msa1088000:intron 30.0%
CTGAAACATACATTGTACTT+AGG + chr7_3:781506-781525 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr7_3:781504-781523 Msa1088000:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr7_3:781506-781525 Msa1088000:intron 30.0%
! TGTATATTTGAGGTTCAAAG+TGG + chr7_3:781609-781628 None:intergenic 30.0%
TGAACCTCAAATATACAACA+TGG - chr7_3:781612-781631 Msa1088000:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr7_3:781619-781638 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr7_3:781619-781638 Msa1088000:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr7_3:781665-781684 Msa1088000:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr7_3:781666-781685 Msa1088000:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr7_3:781685-781704 Msa1088000:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr7_3:781714-781733 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG - chr7_3:781778-781797 Msa1088000:CDS 30.0%
AGTTTGGATGAAGTGATGAT+GGG + chr7_3:780218-780237 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr7_3:780234-780253 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr7_3:780269-780288 None:intergenic 35.0%
!!! TGAGTTTTGCTTGTTTTGTG+TGG - chr7_3:780475-780494 Msa1088000:CDS 35.0%
CTTCACCTTCATTGAAAGTA+TGG + chr7_3:780542-780561 None:intergenic 35.0%
CCAATGGTAAGAGTTTGATA+TGG + chr7_3:780795-780814 None:intergenic 35.0%
CCATATCAAACTCTTACCAT+TGG - chr7_3:780792-780811 Msa1088000:intron 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG - chr7_3:780918-780937 Msa1088000:intron 35.0%
AAGGATGACATAATAGCAGT+AGG - chr7_3:780937-780956 Msa1088000:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr7_3:780967-780986 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr7_3:780968-780987 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr7_3:781054-781073 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG + chr7_3:781062-781081 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG + chr7_3:781065-781084 None:intergenic 35.0%
TGTGGTTCAATTAGCTCAAA+CGG - chr7_3:781068-781087 Msa1088000:intron 35.0%
TCATGTTTGTGTTGCAATTG+CGG - chr7_3:781120-781139 Msa1088000:intron 35.0%
TTTGATACTGTAGAGGTTTG+TGG + chr7_3:781265-781284 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG + chr7_3:781305-781324 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr7_3:781507-781526 Msa1088000:intron 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr7_3:781677-781696 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr7_3:781695-781714 Msa1088000:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr7_3:781696-781715 Msa1088000:intron 35.0%
GTATGTGTTAGGATTCTTTC+AGG - chr7_3:781957-781976 Msa1088000:five_prime_UTR 35.0%
AGTTTGGATGAAGTGATGAT+GGG + chr7_3:780218-780237 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr7_3:780234-780253 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG + chr7_3:780269-780288 None:intergenic 35.0%
!!! TGAGTTTTGCTTGTTTTGTG+TGG - chr7_3:780475-780494 Msa1088000:CDS 35.0%
CTTCACCTTCATTGAAAGTA+TGG + chr7_3:780542-780561 None:intergenic 35.0%
CCAATGGTAAGAGTTTGATA+TGG + chr7_3:780795-780814 None:intergenic 35.0%
CCATATCAAACTCTTACCAT+TGG - chr7_3:780792-780811 Msa1088000:intron 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG - chr7_3:780918-780937 Msa1088000:intron 35.0%
AAGGATGACATAATAGCAGT+AGG - chr7_3:780937-780956 Msa1088000:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr7_3:780967-780986 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr7_3:780968-780987 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr7_3:781054-781073 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG + chr7_3:781062-781081 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG + chr7_3:781065-781084 None:intergenic 35.0%
TGTGGTTCAATTAGCTCAAA+CGG - chr7_3:781068-781087 Msa1088000:intron 35.0%
TCATGTTTGTGTTGCAATTG+CGG - chr7_3:781120-781139 Msa1088000:intron 35.0%
TTTGATACTGTAGAGGTTTG+TGG + chr7_3:781265-781284 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG + chr7_3:781305-781324 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr7_3:781507-781526 Msa1088000:intron 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr7_3:781677-781696 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr7_3:781695-781714 Msa1088000:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr7_3:781696-781715 Msa1088000:intron 35.0%
GAGTTTGGATGAAGTGATGA+TGG + chr7_3:780219-780238 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr7_3:780356-780375 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG + chr7_3:780361-780380 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG + chr7_3:780374-780393 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG - chr7_3:780374-780393 Msa1088000:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG + chr7_3:780382-780401 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG - chr7_3:780534-780553 Msa1088000:CDS 40.0%
ATTGAAGCATGTGGTACTCA+TGG - chr7_3:780649-780668 Msa1088000:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG - chr7_3:780817-780836 Msa1088000:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr7_3:780966-780985 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr7_3:781053-781072 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG - chr7_3:781355-781374 Msa1088000:intron 40.0%
AGTACTTGTTCATTGGAGCA+GGG - chr7_3:781530-781549 Msa1088000:intron 40.0%
! ATTTGAGGTTCAAAGTGGTG+AGG + chr7_3:781604-781623 None:intergenic 40.0%
GAGTTTGGATGAAGTGATGA+TGG + chr7_3:780219-780238 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG + chr7_3:780356-780375 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG + chr7_3:780361-780380 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG + chr7_3:780374-780393 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG - chr7_3:780374-780393 Msa1088000:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG + chr7_3:780382-780401 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG - chr7_3:780534-780553 Msa1088000:CDS 40.0%
ATTGAAGCATGTGGTACTCA+TGG - chr7_3:780649-780668 Msa1088000:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG - chr7_3:780817-780836 Msa1088000:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr7_3:780966-780985 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr7_3:781053-781072 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG - chr7_3:781355-781374 Msa1088000:intron 40.0%
AGTACTTGTTCATTGGAGCA+GGG - chr7_3:781530-781549 Msa1088000:intron 40.0%
! ATTTGAGGTTCAAAGTGGTG+AGG + chr7_3:781604-781623 None:intergenic 40.0%
AACCAACCAAGTCTGACACA+TGG - chr7_3:780163-780182 Msa1088000:three_prime_UTR 45.0%
!! TGGATGAAGTGATGATGGGA+GGG + chr7_3:780214-780233 None:intergenic 45.0%
!! TTGGATGAAGTGATGATGGG+AGG + chr7_3:780215-780234 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr7_3:780263-780282 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr7_3:780260-780279 Msa1088000:three_prime_UTR 45.0%
CTAATGAGCTGTGACACCAA+TGG + chr7_3:780811-780830 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG - chr7_3:780820-780839 Msa1088000:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr7_3:780964-780983 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr7_3:780965-780984 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr7_3:781050-781069 Msa1088000:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG + chr7_3:781234-781253 None:intergenic 45.0%
! GGCAAGCTTTGATACTGTAG+AGG + chr7_3:781272-781291 None:intergenic 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr7_3:781401-781420 Msa1088000:intron 45.0%
GAGTACTTGTTCATTGGAGC+AGG - chr7_3:781529-781548 Msa1088000:intron 45.0%
! TCAAAGTGGTGAGGTTGATC+AGG + chr7_3:781595-781614 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr7_3:780163-780182 Msa1088000:three_prime_UTR 45.0%
!! TGGATGAAGTGATGATGGGA+GGG + chr7_3:780214-780233 None:intergenic 45.0%
!! TTGGATGAAGTGATGATGGG+AGG + chr7_3:780215-780234 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG + chr7_3:780263-780282 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG - chr7_3:780260-780279 Msa1088000:three_prime_UTR 45.0%
CTAATGAGCTGTGACACCAA+TGG + chr7_3:780811-780830 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG - chr7_3:780820-780839 Msa1088000:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr7_3:780964-780983 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr7_3:780965-780984 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr7_3:781050-781069 Msa1088000:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG + chr7_3:781234-781253 None:intergenic 45.0%
! GGCAAGCTTTGATACTGTAG+AGG + chr7_3:781272-781291 None:intergenic 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr7_3:781401-781420 Msa1088000:intron 45.0%
GAGTACTTGTTCATTGGAGC+AGG - chr7_3:781529-781548 Msa1088000:intron 45.0%
! TCAAAGTGGTGAGGTTGATC+AGG + chr7_3:781595-781614 None:intergenic 45.0%
ATAGCGCCATGTGTCAGACT+TGG + chr7_3:780172-780191 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG + chr7_3:780252-780271 None:intergenic 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr7_3:781394-781413 None:intergenic 50.0%
!! CAGGGGGAGTACTTGTTCAT+TGG - chr7_3:781523-781542 Msa1088000:intron 50.0%
ATAGCGCCATGTGTCAGACT+TGG + chr7_3:780172-780191 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG + chr7_3:780252-780271 None:intergenic 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr7_3:781394-781413 None:intergenic 50.0%
!! CAGGGGGAGTACTTGTTCAT+TGG - chr7_3:781523-781542 Msa1088000:intron 50.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr7_3:780168-780187 None:intergenic 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr7_3:781390-781409 None:intergenic 55.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr7_3:780168-780187 None:intergenic 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr7_3:781390-781409 None:intergenic 55.0%
GGGAGGGACAAGTGAGAGTG+AGG + chr7_3:780198-780217 None:intergenic 60.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr7_3:780949-780968 Msa1088000:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr7_3:780958-780977 Msa1088000:intron 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG + chr7_3:781212-781231 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG - chr7_3:781220-781239 Msa1088000:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG + chr7_3:781293-781312 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr7_3:781381-781400 Msa1088000:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr7_3:781382-781401 Msa1088000:intron 60.0%
GGGAGGGACAAGTGAGAGTG+AGG + chr7_3:780198-780217 None:intergenic 60.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr7_3:780949-780968 Msa1088000:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr7_3:780958-780977 Msa1088000:intron 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG + chr7_3:781212-781231 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG - chr7_3:781220-781239 Msa1088000:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG + chr7_3:781293-781312 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr7_3:781381-781400 Msa1088000:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr7_3:781382-781401 Msa1088000:intron 60.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr7_3:781386-781405 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr7_3:781383-781402 Msa1088000:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr7_3:781387-781406 None:intergenic 65.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr7_3:781386-781405 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr7_3:781383-781402 Msa1088000:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr7_3:781387-781406 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 780131 781977 780131 ID=Msa1088000;Name=Msa1088000
chr7_3 mRNA 780131 781977 780131 ID=Msa1088000-mRNA-1;Parent=Msa1088000;Name=Msa1088000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=51|1|1|1|1|1|5|215|215
chr7_3 exon 780131 780582 780131 ID=Msa1088000-mRNA-1:exon:370;Parent=Msa1088000-mRNA-1
chr7_3 exon 780686 780744 780686 ID=Msa1088000-mRNA-1:exon:369;Parent=Msa1088000-mRNA-1
chr7_3 exon 781129 781191 781129 ID=Msa1088000-mRNA-1:exon:368;Parent=Msa1088000-mRNA-1
chr7_3 exon 781538 781601 781538 ID=Msa1088000-mRNA-1:exon:367;Parent=Msa1088000-mRNA-1
chr7_3 exon 781702 781977 781702 ID=Msa1088000-mRNA-1:exon:366;Parent=Msa1088000-mRNA-1
chr7_3 five_prime_UTR 781927 781977 781927 ID=Msa1088000-mRNA-1:five_prime_utr;Parent=Msa1088000-mRNA-1
chr7_3 CDS 781702 781926 781702 ID=Msa1088000-mRNA-1:cds;Parent=Msa1088000-mRNA-1
chr7_3 CDS 781538 781601 781538 ID=Msa1088000-mRNA-1:cds;Parent=Msa1088000-mRNA-1
chr7_3 CDS 781129 781191 781129 ID=Msa1088000-mRNA-1:cds;Parent=Msa1088000-mRNA-1
chr7_3 CDS 780686 780744 780686 ID=Msa1088000-mRNA-1:cds;Parent=Msa1088000-mRNA-1
chr7_3 CDS 780346 780582 780346 ID=Msa1088000-mRNA-1:cds;Parent=Msa1088000-mRNA-1
chr7_3 three_prime_UTR 780131 780345 780131 ID=Msa1088000-mRNA-1:three_prime_utr;Parent=Msa1088000-mRNA-1
Gene Sequence

>Msa1088000

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCCATCATCACTTCATCCAAACTCACTTCAAAATCCTTCTCATCTCCAACACCACTCAACTTTCATGGCATATTCACTACCAAGAGTAACAAAAACTCAACAAAATTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGATCCTGTTGACCAATTTCGCACTAATGGCATTCCACCTGAAGAATTTGAGTATGGAATATTTGATGGTCACCATACTTTCAATGAAGGTGAAGAAAAGAAAGGAACATTTTGGGGTGCAATTAAGGATGACATAATAGCAGTAGGACCCCCCACTGGATTTCAAGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTGCTGGGGTATTCTTCGATGTTCCGGGGGAGTACTTGTTCATTGGAGCAGGGATATTTACAATTGTATTTTGCATAATTGAGATGGATAAACCTGATCAACCTCACCACTTTGAACCTCAAATATACAACATGGAAAGAGGAGCTAGAGACAAGTTGATAAATGACTATAATTCCATGAGCATATGGGATTTCAATGACAAATATGGAGACCTTTGGGATTTTACTATCAAGAAGAATAAGGATGACATAATGAAGAGATAA

Protein sequence

>Msa1088000

MALCSSLSLVPPIITSSKLTSKSFSSPTPLNFHGIFTTKSNKNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIKDDIIAVGPPTGFQGLISWLFPPAIAAGVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNMERGARDKLINDYNSMSIWDFNDKYGDLWDFTIKKNKDDIMKR*