Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518480 | XP_003602659.1 | 90.980 | 255 | 12 | 1 | 3 | 257 | 140 | 383 | 8.98e-161 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518480 | sp|Q94AQ6|SIR4_ARATH | 76.471 | 255 | 49 | 1 | 3 | 257 | 130 | 373 | 2.97e-144 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518480 | G8A1N0 | 90.980 | 255 | 12 | 1 | 3 | 257 | 140 | 383 | 4.29e-161 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0518480 | 0.818457 | 1.940707e-52 | -8.615850e-47 |
| Msa0005690 | Msa0518480 | 0.864836 | 9.124715e-65 | -8.615850e-47 |
| Msa0018470 | Msa0518480 | 0.815927 | 7.191565e-52 | -8.615850e-47 |
| Msa0021980 | Msa0518480 | 0.828627 | 8.094653e-55 | -8.615850e-47 |
| Msa0032450 | Msa0518480 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0034100 | Msa0518480 | 0.812652 | 3.806523e-51 | -8.615850e-47 |
| Msa0041780 | Msa0518480 | 0.810706 | 1.008697e-50 | -8.615850e-47 |
| Msa0053960 | Msa0518480 | 0.827980 | 1.158880e-54 | -8.615850e-47 |
| Msa0064550 | Msa0518480 | 0.815520 | 8.861987e-52 | -8.615850e-47 |
| Msa0072390 | Msa0518480 | 0.801905 | 7.220195e-49 | -8.615850e-47 |
| Msa0072830 | Msa0518480 | 0.811404 | 7.121145e-51 | -8.615850e-47 |
| Msa0072860 | Msa0518480 | 0.807281 | 5.455971e-50 | -8.615850e-47 |
| Msa0080810 | Msa0518480 | 0.814468 | 1.517386e-51 | -8.615850e-47 |
| Msa0087130 | Msa0518480 | 0.817880 | 2.621283e-52 | -8.615850e-47 |
| Msa0096020 | Msa0518480 | 0.822450 | 2.353806e-53 | -8.615850e-47 |
| Msa0096510 | Msa0518480 | 0.868488 | 6.293177e-66 | -8.615850e-47 |
| Msa0104360 | Msa0518480 | 0.808871 | 2.503299e-50 | -8.615850e-47 |
| Msa0114700 | Msa0518480 | 0.818112 | 2.323731e-52 | -8.615850e-47 |
| Msa0116470 | Msa0518480 | 0.828380 | 9.285918e-55 | -8.615850e-47 |
| Msa0116510 | Msa0518480 | 0.844508 | 7.238453e-59 | -8.615850e-47 |
| Msa0117300 | Msa0518480 | 0.808151 | 3.565566e-50 | -8.615850e-47 |
| Msa0120320 | Msa0518480 | 0.809233 | 2.094217e-50 | -8.615850e-47 |
| Msa0128110 | Msa0518480 | 0.807352 | 5.270847e-50 | -8.615850e-47 |
| Msa0131090 | Msa0518480 | 0.844107 | 9.279920e-59 | -8.615850e-47 |
| Msa0143280 | Msa0518480 | 0.839476 | 1.549007e-57 | -8.615850e-47 |
| Msa0148430 | Msa0518480 | 0.843952 | 1.020758e-58 | -8.615850e-47 |
| Msa0160650 | Msa0518480 | 0.818989 | 1.469839e-52 | -8.615850e-47 |
| Msa0163960 | Msa0518480 | 0.821252 | 4.458056e-53 | -8.615850e-47 |
| Msa0173370 | Msa0518480 | 0.813804 | 2.126105e-51 | -8.615850e-47 |
| Msa0187980 | Msa0518480 | 0.844013 | 9.830535e-59 | -8.615850e-47 |
| Msa0197730 | Msa0518480 | 0.806752 | 7.060279e-50 | -8.615850e-47 |
| Msa0198440 | Msa0518480 | 0.807212 | 5.642955e-50 | -8.615850e-47 |
| Msa0224400 | Msa0518480 | 0.802455 | 5.563867e-49 | -8.615850e-47 |
| Msa0225880 | Msa0518480 | 0.862450 | 5.026045e-64 | -8.615850e-47 |
| Msa0378310 | Msa0518480 | 0.837597 | 4.732764e-57 | -8.615850e-47 |
| Msa0378670 | Msa0518480 | 0.846897 | 1.627602e-59 | -8.615850e-47 |
| Msa0378700 | Msa0518480 | 0.846074 | 2.728682e-59 | -8.615850e-47 |
| Msa0404060 | Msa0518480 | 0.818092 | 2.348010e-52 | -8.615850e-47 |
| Msa0404070 | Msa0518480 | 0.809340 | 1.986396e-50 | -8.615850e-47 |
| Msa0404690 | Msa0518480 | 0.810694 | 1.015042e-50 | -8.615850e-47 |
| Msa0428330 | Msa0518480 | 0.861307 | 1.124500e-63 | -8.615850e-47 |
| Msa0431940 | Msa0518480 | 0.817307 | 3.529376e-52 | -8.615850e-47 |
| Msa0467710 | Msa0518480 | 0.812758 | 3.608912e-51 | -8.615850e-47 |
| Msa0468360 | Msa0518480 | 0.831332 | 1.772309e-55 | -8.615850e-47 |
| Msa0239610 | Msa0518480 | 0.826539 | 2.565955e-54 | -8.615850e-47 |
| Msa0250830 | Msa0518480 | 0.801245 | 9.863007e-49 | -8.615850e-47 |
| Msa0253160 | Msa0518480 | 0.820514 | 6.590670e-53 | -8.615850e-47 |
| Msa0260470 | Msa0518480 | 0.851209 | 1.030077e-60 | -8.615850e-47 |
| Msa0264940 | Msa0518480 | -0.800605 | 1.332386e-48 | -8.615850e-47 |
| Msa0265980 | Msa0518480 | -0.803813 | 2.914061e-49 | -8.615850e-47 |
| Msa0278670 | Msa0518480 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0291940 | Msa0518480 | 0.815576 | 8.611281e-52 | -8.615850e-47 |
| Msa0302990 | Msa0518480 | -0.800192 | 1.617205e-48 | -8.615850e-47 |
| Msa0303500 | Msa0518480 | 0.808663 | 2.772354e-50 | -8.615850e-47 |
| Msa0303920 | Msa0518480 | -0.826151 | 3.175207e-54 | -8.615850e-47 |
| Msa0304110 | Msa0518480 | 0.862545 | 4.696544e-64 | -8.615850e-47 |
| Msa0317360 | Msa0518480 | 0.811818 | 5.789229e-51 | -8.615850e-47 |
| Msa0318070 | Msa0518480 | 0.802649 | 5.074408e-49 | -8.615850e-47 |
| Msa0341190 | Msa0518480 | 0.847094 | 1.436805e-59 | -8.615850e-47 |
| Msa0484250 | Msa0518480 | 0.802204 | 6.269706e-49 | -8.615850e-47 |
| Msa0518480 | Msa0520810 | 0.807117 | 5.912582e-50 | -8.615850e-47 |
| Msa0518480 | Msa0521940 | -0.802636 | 5.107911e-49 | -8.615850e-47 |
| Msa0518480 | Msa0530340 | 0.821473 | 3.962087e-53 | -8.615850e-47 |
| Msa0518480 | Msa0545230 | 0.841064 | 5.958292e-58 | -8.615850e-47 |
| Msa0518480 | Msa0547200 | -0.804049 | 2.603460e-49 | -8.615850e-47 |
| Msa0518480 | Msa0556070 | 0.850137 | 2.062322e-60 | -8.615850e-47 |
| Msa0518480 | Msa0560370 | 0.842268 | 2.868821e-58 | -8.615850e-47 |
| Msa0518480 | Msa0565760 | 0.816807 | 4.571530e-52 | -8.615850e-47 |
| Msa0518480 | Msa0565860 | 0.820929 | 5.289358e-53 | -8.615850e-47 |
| Msa0518480 | Msa0569930 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0518480 | Msa0570680 | 0.807529 | 4.835713e-50 | -8.615850e-47 |
| Msa0518480 | Msa0579170 | 0.836822 | 7.468924e-57 | -8.615850e-47 |
| Msa0518480 | Msa0579230 | 0.841293 | 5.187234e-58 | -8.615850e-47 |
| Msa0518480 | Msa0580540 | 0.819702 | 1.010962e-52 | -8.615850e-47 |
| Msa0518480 | Msa0589610 | 0.805520 | 1.283039e-49 | -8.615850e-47 |
| Msa0518480 | Msa0600820 | 0.808380 | 3.186550e-50 | -8.615850e-47 |
| Msa0518480 | Msa0604880 | 0.806316 | 8.727439e-50 | -8.615850e-47 |
| Msa0518480 | Msa0608940 | 0.804561 | 2.036044e-49 | -8.615850e-47 |
| Msa0518480 | Msa0610780 | 0.802054 | 6.731138e-49 | -8.615850e-47 |
| Msa0518480 | Msa0610810 | 0.816357 | 5.765877e-52 | -8.615850e-47 |
| Msa0518480 | Msa0621780 | 0.801485 | 8.807855e-49 | -8.615850e-47 |
| Msa0518480 | Msa0622250 | 0.806139 | 9.508306e-50 | -8.615850e-47 |
| Msa0518480 | Msa0633720 | 0.832277 | 1.036203e-55 | -8.615850e-47 |
| Msa0518480 | Msa0646190 | 0.802721 | 4.904232e-49 | -8.615850e-47 |
| Msa0518480 | Msa0651310 | 0.818455 | 1.942651e-52 | -8.615850e-47 |
| Msa0518480 | Msa0659300 | -0.828040 | 1.121232e-54 | -8.615850e-47 |
| Msa0518480 | Msa0675010 | 0.813717 | 2.222374e-51 | -8.615850e-47 |
| Msa0518480 | Msa0679780 | 0.839959 | 1.159449e-57 | -8.615850e-47 |
| Msa0518480 | Msa0693400 | 0.856265 | 3.616397e-62 | -8.615850e-47 |
| Msa0518480 | Msa0693500 | 0.809000 | 2.348683e-50 | -8.615850e-47 |
| Msa0518480 | Msa0697600 | 0.820280 | 7.455942e-53 | -8.615850e-47 |
| Msa0518480 | Msa0698650 | 0.813608 | 2.348532e-51 | -8.615850e-47 |
| Msa0518480 | Msa0702200 | 0.809142 | 2.189963e-50 | -8.615850e-47 |
| Msa0518480 | Msa0702310 | 0.811723 | 6.070666e-51 | -8.615850e-47 |
| Msa0518480 | Msa0702620 | 0.816482 | 5.406362e-52 | -8.615850e-47 |
| Msa0518480 | Msa0705050 | 0.803906 | 2.787000e-49 | -8.615850e-47 |
| Msa0518480 | Msa0705460 | -0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0518480 | Msa0705810 | 0.817685 | 2.901491e-52 | -8.615850e-47 |
| Msa0518480 | Msa0712910 | 0.802007 | 6.881042e-49 | -8.615850e-47 |
| Msa0518480 | Msa0715510 | -0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0518480 | Msa0748330 | 0.803215 | 3.877328e-49 | -8.615850e-47 |
| Msa0518480 | Msa0748980 | 0.854164 | 1.477255e-61 | -8.615850e-47 |
| Msa0518480 | Msa0749150 | 0.823324 | 1.472514e-53 | -8.615850e-47 |
| Msa0518480 | Msa0756440 | 0.822369 | 2.458227e-53 | -8.615850e-47 |
| Msa0518480 | Msa0792880 | 0.814175 | 1.761482e-51 | -8.615850e-47 |
| Msa0518480 | Msa0793100 | 0.807927 | 3.980024e-50 | -8.615850e-47 |
| Msa0518480 | Msa0795710 | 0.801783 | 7.649571e-49 | -8.615850e-47 |
| Msa0518480 | Msa0803530 | 0.844689 | 6.470568e-59 | -8.615850e-47 |
| Msa0518480 | Msa0813630 | 0.815029 | 1.139822e-51 | -8.615850e-47 |
| Msa0518480 | Msa0825520 | 0.849031 | 4.196061e-60 | -8.615850e-47 |
| Msa0518480 | Msa0828900 | 0.816124 | 6.499367e-52 | -8.615850e-47 |
| Msa0518480 | Msa0835550 | 0.838388 | 2.962816e-57 | -8.615850e-47 |
| Msa0518480 | Msa0846070 | 0.809712 | 1.652009e-50 | -8.615850e-47 |
| Msa0518480 | Msa0864730 | 0.848735 | 5.069954e-60 | -8.615850e-47 |
| Msa0518480 | Msa0864750 | 0.849238 | 3.676196e-60 | -8.615850e-47 |
| Msa0518480 | Msa0879650 | 0.841348 | 5.017364e-58 | -8.615850e-47 |
| Msa0518480 | Msa0887100 | 0.808412 | 3.137296e-50 | -8.615850e-47 |
| Msa0518480 | Msa0888820 | 0.826292 | 2.939044e-54 | -8.615850e-47 |
| Msa0518480 | Msa0899730 | 0.844861 | 5.814366e-59 | -8.615850e-47 |
| Msa0518480 | Msa0968780 | 0.824941 | 6.145261e-54 | -8.615850e-47 |
| Msa0518480 | Msa0975550 | 0.804263 | 2.349494e-49 | -8.615850e-47 |
| Msa0518480 | Msa0975560 | 0.827929 | 1.192469e-54 | -8.615850e-47 |
| Msa0518480 | Msa0984000 | 0.819625 | 1.052597e-52 | -8.615850e-47 |
| Msa0518480 | Msa0999480 | 0.805247 | 1.463450e-49 | -8.615850e-47 |
| Msa0518480 | Msa0999590 | 0.878678 | 2.312661e-69 | -8.615850e-47 |
| Msa0518480 | Msa1028720 | 0.839817 | 1.262635e-57 | -8.615850e-47 |
| Msa0518480 | Msa1031530 | 0.854138 | 1.502646e-61 | -8.615850e-47 |
| Msa0518480 | Msa1040730 | -0.814211 | 1.729073e-51 | -8.615850e-47 |
| Msa0518480 | Msa1042130 | -0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa0518480 | Msa1052030 | 0.817740 | 2.819091e-52 | -8.615850e-47 |
| Msa0518480 | Msa1067710 | 0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0518480 | Msa1070630 | 0.800870 | 1.176821e-48 | -8.615850e-47 |
| Msa0518480 | Msa1082150 | 0.801303 | 9.595635e-49 | -8.615850e-47 |
| Msa0518480 | Msa1096570 | 0.802846 | 4.622685e-49 | -8.615850e-47 |
| Msa0518480 | Msa1101300 | 0.822671 | 2.091498e-53 | -8.615850e-47 |
| Msa0518480 | Msa1124880 | -0.817913 | 2.577022e-52 | -8.615850e-47 |
| Msa0518480 | Msa1125450 | 0.836011 | 1.201255e-56 | -8.615850e-47 |
| Msa0518480 | Msa1157030 | 0.805898 | 1.068650e-49 | -8.615850e-47 |
| Msa0518480 | Msa1158450 | 0.804745 | 1.864072e-49 | -8.615850e-47 |
| Msa0518480 | Msa1164570 | 0.840701 | 7.418930e-58 | -8.615850e-47 |
| Msa0518480 | Msa1166960 | 0.801457 | 8.924916e-49 | -8.615850e-47 |
| Msa0518480 | Msa1173380 | 0.821452 | 4.007904e-53 | -8.615850e-47 |
| Msa0518480 | Msa1182400 | 0.808175 | 3.524523e-50 | -8.615850e-47 |
| Msa0518480 | Msa1182800 | 0.805962 | 1.035891e-49 | -8.615850e-47 |
| Msa0518480 | Msa1190350 | 0.803877 | 2.825894e-49 | -8.615850e-47 |
| Msa0518480 | Msa1219060 | 0.831563 | 1.555264e-55 | -8.615850e-47 |
| Msa0518480 | Msa1230190 | 0.809342 | 1.983926e-50 | -8.615850e-47 |
| Msa0518480 | Msa1236860 | 0.835770 | 1.383129e-56 | -8.615850e-47 |
| Msa0518480 | Msa1237260 | 0.824696 | 7.019102e-54 | -8.615850e-47 |
| Msa0518480 | Msa1243630 | 0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa0518480 | Msa1245120 | -0.822850 | 1.899904e-53 | -8.615850e-47 |
| Msa0518480 | Msa1249410 | 0.812057 | 5.134068e-51 | -8.615850e-47 |
| Msa0518480 | Msa1278420 | 0.808563 | 2.912332e-50 | -8.615850e-47 |
| Msa0518480 | Msa1286950 | 0.817233 | 3.667888e-52 | -8.615850e-47 |
| Msa0518480 | Msa1295220 | 0.804053 | 2.598435e-49 | -8.615850e-47 |
| Msa0518480 | Msa1317240 | 0.837774 | 4.261028e-57 | -8.615850e-47 |
| Msa0518480 | Msa1319230 | 0.804149 | 2.481688e-49 | -8.615850e-47 |
| Msa0518480 | Msa1320530 | -0.802895 | 4.515263e-49 | -8.615850e-47 |
| Msa0518480 | Msa1323260 | 0.800998 | 1.107683e-48 | -8.615850e-47 |
| Msa0518480 | Msa1332690 | 0.812063 | 5.119775e-51 | -8.615850e-47 |
| Msa0518480 | Msa1338180 | 0.817932 | 2.551824e-52 | -8.615850e-47 |
| Msa0518480 | Msa1343450 | 0.811289 | 7.541253e-51 | -8.615850e-47 |
| Msa0518480 | Msa1349810 | 0.825386 | 4.821292e-54 | -8.615850e-47 |
| Msa0518480 | Msa1356730 | 0.822087 | 2.857479e-53 | -8.615850e-47 |
| Msa0518480 | Msa1368660 | 0.815031 | 1.138411e-51 | -8.615850e-47 |
| Msa0518480 | Msa1369180 | 0.812985 | 3.218801e-51 | -8.615850e-47 |
| Msa0518480 | Msa1373390 | 0.815625 | 8.399106e-52 | -8.615850e-47 |
| Msa0518480 | Msa1382750 | 0.869936 | 2.130655e-66 | -8.615850e-47 |
| Msa0518480 | Msa1384620 | 0.848468 | 6.011378e-60 | -8.615850e-47 |
| Msa0518480 | Msa1386250 | 0.839075 | 1.967708e-57 | -8.615850e-47 |
| Msa0518480 | Msa1394900 | 0.814268 | 1.679945e-51 | -8.615850e-47 |
| Msa0518480 | Msa1395640 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa0518480 | Msa1396550 | -0.812711 | 3.694674e-51 | -8.615850e-47 |
| Msa0518480 | Msa1403950 | 0.817430 | 3.311683e-52 | -8.615850e-47 |
| Msa0518480 | Msa1407210 | -0.802115 | 6.537085e-49 | -8.615850e-47 |
| Msa0518480 | Msa1431240 | 0.865378 | 6.167517e-65 | -8.615850e-47 |
| Msa0518480 | Msa1432250 | 0.807665 | 4.524815e-50 | -8.615850e-47 |
| Msa0518480 | Msa1450630 | 0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0518480 | Msa1450780 | 0.806682 | 7.304549e-50 | -8.615850e-47 |
| Msa0518480 | Msa1450850 | 0.802491 | 5.471531e-49 | -8.615850e-47 |
| Msa0518480 | Msa1456620 | 0.803162 | 3.976301e-49 | -8.615850e-47 |
| Msa0518480 | Msa1459540 | 0.835864 | 1.308804e-56 | -8.615850e-47 |
| Msa0518480 | Msa1459630 | 0.803296 | 3.729597e-49 | -8.615850e-47 |
| Msa0518480 | Msa1460310 | -0.800200 | 1.611491e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518480 | MtrunA17_Chr3g0130591 | 90.588 | 255 | 13 | 1 | 3 | 257 | 139 | 382 | 2.31e-164 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518480 | AT5G09230.4 | 75.875 | 257 | 51 | 1 | 1 | 257 | 26 | 271 | 5.70e-147 | 412 |
| Msa0518480 | AT5G09230.6 | 75.875 | 257 | 51 | 1 | 1 | 257 | 26 | 271 | 5.70e-147 | 412 |
| Msa0518480 | AT5G09230.5 | 76.471 | 255 | 49 | 1 | 3 | 257 | 111 | 354 | 1.93e-145 | 411 |
| Msa0518480 | AT5G09230.7 | 76.471 | 255 | 49 | 1 | 3 | 257 | 133 | 376 | 2.39e-145 | 412 |
| Msa0518480 | AT5G09230.2 | 76.471 | 255 | 49 | 1 | 3 | 257 | 130 | 373 | 3.02e-145 | 411 |
| Msa0518480 | AT5G09230.1 | 76.471 | 255 | 49 | 1 | 3 | 257 | 130 | 373 | 3.02e-145 | 411 |
| Msa0518480 | AT5G09230.3 | 75.243 | 206 | 40 | 1 | 3 | 208 | 130 | 324 | 8.04e-115 | 332 |
Find 78 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGATACCTATCGACATTT+TGG | 0.150792 | 3_4:+70294241 | None:intergenic |
| GGCAGAAGCAATTGAAAATT+TGG | 0.197656 | 3_4:-70292845 | Msa0518480:CDS |
| AATTGCTGACCTTTGGATTA+AGG | 0.201173 | 3_4:+70294006 | None:intergenic |
| TTCTCATTTGAAGGTGATTA+TGG | 0.227697 | 3_4:+70290939 | None:intergenic |
| TAAATTCTTCAGTCAGTTAC+AGG | 0.260104 | 3_4:+70290689 | None:intergenic |
| GCCGAGCCAGGAGGAGATAT+TGG | 0.270807 | 3_4:-70294371 | Msa0518480:CDS |
| TCTTTGTAGAAGCTTATTTC+AGG | 0.271782 | 3_4:-70294042 | Msa0518480:CDS |
| TGAGAACACCATTGCACTTC+TGG | 0.276909 | 3_4:+70292713 | None:intergenic |
| ACAGTCCCATGTAATTCTAA+TGG | 0.310751 | 3_4:+70294098 | None:intergenic |
| GCCATATCGGCTCTTTCCTT+TGG | 0.319141 | 3_4:+70291541 | None:intergenic |
| ATTGCTGACCTTTGGATTAA+GGG | 0.339352 | 3_4:+70294007 | None:intergenic |
| ATCTGCTGCTCATTGTGCTT+TGG | 0.346640 | 3_4:-70294304 | Msa0518480:CDS |
| ATTTGAACCTTGTGTTGTTC+AGG | 0.365324 | 3_4:-70290986 | Msa0518480:three_prime_UTR |
| CATTGCACTTCTGGCAGGTT+GGG | 0.375793 | 3_4:+70292722 | None:intergenic |
| TCCAAAGGAAAGAGCCGATA+TGG | 0.377429 | 3_4:-70291542 | Msa0518480:CDS |
| GAAGTTAAGCTTTCAGAGTC+TGG | 0.381252 | 3_4:-70290877 | Msa0518480:three_prime_UTR |
| AGATGCTTCCATTGCCATAT+CGG | 0.402207 | 3_4:+70291528 | None:intergenic |
| TTGGATTAAGGGACTTCAAC+TGG | 0.402388 | 3_4:+70294018 | None:intergenic |
| TGTCTGACCCAGGGCTTCCA+TGG | 0.409403 | 3_4:+70292821 | None:intergenic |
| GGGTAACCATAAAATCAATT+CGG | 0.413467 | 3_4:+70294262 | None:intergenic |
| ATTATGAAGGTTGTCTTCTT+CGG | 0.414780 | 3_4:-70291574 | Msa0518480:intron |
| CAGTCCCATGTAATTCTAAT+GGG | 0.420290 | 3_4:+70294099 | None:intergenic |
| CACAGGGCAGCTCATGAGGC+TGG | 0.421023 | 3_4:-70291272 | Msa0518480:intron |
| CCCAATATCTCCTCCTGGCT+CGG | 0.435419 | 3_4:+70294370 | None:intergenic |
| CCGAGCCAGGAGGAGATATT+GGG | 0.437495 | 3_4:-70294370 | Msa0518480:CDS |
| CTGCAAGAGATTATGCTTGT+TGG | 0.445302 | 3_4:-70290825 | Msa0518480:three_prime_UTR |
| TTGAAAATCAATGCACGATT+GGG | 0.448631 | 3_4:-70291194 | Msa0518480:CDS |
| ATGGGCAACTACCAGCTTGA+TGG | 0.450566 | 3_4:+70294117 | None:intergenic |
| TATTGGGCTAGAAGCTATGC+TGG | 0.460514 | 3_4:-70294354 | Msa0518480:CDS |
| TTCTTCGTTCAAGCCGAGCC+AGG | 0.462937 | 3_4:-70294383 | Msa0518480:CDS |
| ACGCTGGTATTCTCATTTGA+AGG | 0.467583 | 3_4:+70290930 | None:intergenic |
| AATTTGGACCATGGAAGCCC+TGG | 0.472279 | 3_4:-70292829 | Msa0518480:CDS |
| TTGGCAGCTTTCGAGAAAGC+TGG | 0.476655 | 3_4:-70294285 | Msa0518480:CDS |
| CCTGGGTCAGACAAAAGCTT+TGG | 0.483143 | 3_4:-70292811 | Msa0518480:CDS |
| CCATTGCACTTCTGGCAGGT+TGG | 0.492755 | 3_4:+70292721 | None:intergenic |
| TTGTGTTGTTCAGGTAATGT+AGG | 0.496387 | 3_4:-70290977 | Msa0518480:three_prime_UTR |
| GATCCCATGTCAAGTACTCT+TGG | 0.502273 | 3_4:+70291061 | None:intergenic |
| TGCTTCTTTCAGTTATATGT+CGG | 0.508655 | 3_4:-70292671 | Msa0518480:intron |
| AACACCATTGCACTTCTGGC+AGG | 0.512011 | 3_4:+70292717 | None:intergenic |
| TTCAGGCTGCACCATCAAGC+TGG | 0.514461 | 3_4:-70294128 | Msa0518480:intron |
| AGTTGCCCATTAGAATTACA+TGG | 0.518703 | 3_4:-70294104 | Msa0518480:CDS |
| TCAATCTCAATATCACCATC+AGG | 0.519126 | 3_4:+70292775 | None:intergenic |
| GAAGCAAGATGACCTACATC+AGG | 0.519593 | 3_4:+70292688 | None:intergenic |
| CATTTGAAGGTGATTATGGT+CGG | 0.529787 | 3_4:+70290943 | None:intergenic |
| GCACTTCTGGCAGGTTGGGA+TGG | 0.534673 | 3_4:+70292726 | None:intergenic |
| CTTGAAAATCAATGCACGAT+TGG | 0.538004 | 3_4:-70291195 | Msa0518480:CDS |
| GCAATTGAAAATTTGGACCA+TGG | 0.538406 | 3_4:-70292838 | Msa0518480:CDS |
| TCTAGCCCAATATCTCCTCC+TGG | 0.545671 | 3_4:+70294365 | None:intergenic |
| GCTACTGCAATCGTCAATGT+AGG | 0.564103 | 3_4:-70291245 | Msa0518480:CDS |
| GGTGTTCTCAAACCTGATGT+AGG | 0.567902 | 3_4:-70292700 | Msa0518480:CDS |
| AATCAATGCACGATTGGGTG+AGG | 0.568540 | 3_4:-70291189 | Msa0518480:intron |
| AAATTCTTCAGTCAGTTACA+GGG | 0.570803 | 3_4:+70290690 | None:intergenic |
| TTACACAGCAGGGACGCTGA+TGG | 0.576090 | 3_4:+70291039 | None:intergenic |
| CTTCGGTGATAATGTTCCAA+AGG | 0.576117 | 3_4:-70291557 | Msa0518480:CDS |
| TGGTTACCCAAAATGTCGAT+AGG | 0.577299 | 3_4:-70294248 | Msa0518480:intron |
| ACTGTAATTTGTATAGATTG+TGG | 0.577480 | 3_4:-70294071 | Msa0518480:CDS |
| CTAGAAGCTATGCTGGGTGG+AGG | 0.585143 | 3_4:-70294347 | Msa0518480:CDS |
| AAAGCACAATGAGCAGCAGA+TGG | 0.598287 | 3_4:+70294306 | None:intergenic |
| ACTGAAGAATTTAGTTCACA+TGG | 0.601620 | 3_4:-70290679 | Msa0518480:three_prime_UTR |
| GGAAAGAGCCGATATGGCAA+TGG | 0.608710 | 3_4:-70291536 | Msa0518480:CDS |
| GAGAATACCAGCGTGTAGGT+AGG | 0.610313 | 3_4:-70290921 | Msa0518480:three_prime_UTR |
| TACATTACCTGAACAACACA+AGG | 0.610693 | 3_4:+70290979 | None:intergenic |
| ATTTGGACCATGGAAGCCCT+GGG | 0.613997 | 3_4:-70292828 | Msa0518480:CDS |
| GTTGAAGTCCCTTAATCCAA+AGG | 0.626611 | 3_4:-70294015 | Msa0518480:intron |
| GACAAGTCGAAAAGCAGACA+TGG | 0.628662 | 3_4:+70291462 | None:intergenic |
| AAAGCTTTGGAATGAAACAA+AGG | 0.629664 | 3_4:-70292798 | Msa0518480:CDS |
| AAATGAGAATACCAGCGTGT+AGG | 0.630221 | 3_4:-70290925 | Msa0518480:three_prime_UTR |
| GGAATGAAACAAAGGCCTGA+TGG | 0.637139 | 3_4:-70292790 | Msa0518480:CDS |
| CCAACCTGCCAGAAGTGCAA+TGG | 0.637167 | 3_4:-70292721 | Msa0518480:CDS |
| GTTGCCCATTAGAATTACAT+GGG | 0.644261 | 3_4:-70294103 | Msa0518480:CDS |
| ATTGGGCTAGAAGCTATGCT+GGG | 0.649223 | 3_4:-70294353 | Msa0518480:CDS |
| AATTCTTCAGTCAGTTACAG+GGG | 0.662015 | 3_4:+70290691 | None:intergenic |
| TTCGTTCAAGCCGAGCCAGG+AGG | 0.674610 | 3_4:-70294380 | Msa0518480:CDS |
| ATTGCCAAGAGTACTTGACA+TGG | 0.677222 | 3_4:-70291065 | Msa0518480:CDS |
| TTGCCAAGAGTACTTGACAT+GGG | 0.680131 | 3_4:-70291064 | Msa0518480:CDS |
| TGACATTCCTACCTACACGC+TGG | 0.686296 | 3_4:+70290914 | None:intergenic |
| GGGCTAGAAGCTATGCTGGG+TGG | 0.690768 | 3_4:-70294350 | Msa0518480:CDS |
| ATGAGCAGCAGATGGCTGTG+CGG | 0.691254 | 3_4:+70294314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATGTTATTATGTAGAA+AGG | - | chr3_4:70291335-70291354 | Msa0518480:intron | 15.0% |
| !!! | ATAATTAACTTGTAATAACT+GGG | - | chr3_4:70292609-70292628 | Msa0518480:intron | 15.0% |
| !!! | TAGAAAGTATAAAAAAGAAA+AGG | - | chr3_4:70292842-70292861 | Msa0518480:CDS | 15.0% |
| !!! | AATATAGTTCTGATATAAAT+TGG | + | chr3_4:70293103-70293122 | None:intergenic | 15.0% |
| !!! | TCTTATATTTTAGTATGTTA+CGG | - | chr3_4:70293189-70293208 | Msa0518480:intron | 15.0% |
| !! | TTAAATAATGTCAAAGAGAA+AGG | + | chr3_4:70290789-70290808 | None:intergenic | 20.0% |
| !! | TCTCTTTGACATTATTTAAA+AGG | - | chr3_4:70290790-70290809 | Msa0518480:three_prime_UTR | 20.0% |
| !! | AATTGATCATGATAAATAAC+TGG | + | chr3_4:70290980-70290999 | None:intergenic | 20.0% |
| !! | AAGTAAATGATAAATGCAAA+AGG | + | chr3_4:70291744-70291763 | None:intergenic | 20.0% |
| !! | TTAATTAGTACTTTGTGAAT+CGG | - | chr3_4:70291812-70291831 | Msa0518480:intron | 20.0% |
| !! | AAAAGTAGAAAGAAATGTAT+AGG | - | chr3_4:70291854-70291873 | Msa0518480:intron | 20.0% |
| !! | TTAAAGGATTGATAAAATGA+AGG | + | chr3_4:70292230-70292249 | None:intergenic | 20.0% |
| !! | AATTATGAAGAACAATAATC+TGG | + | chr3_4:70292595-70292614 | None:intergenic | 20.0% |
| !!! | CATAATTAACTTGTAATAAC+TGG | - | chr3_4:70292608-70292627 | Msa0518480:intron | 20.0% |
| !!! | TAATTAACTTGTAATAACTG+GGG | - | chr3_4:70292610-70292629 | Msa0518480:intron | 20.0% |
| !!! | TATCGGTAGTTATTTTATAT+TGG | - | chr3_4:70292775-70292794 | Msa0518480:CDS | 20.0% |
| !!! | ATTATGGGATAGTTTTTAAA+TGG | - | chr3_4:70292873-70292892 | Msa0518480:intron | 20.0% |
| !!! | GATAGTTTTTAAATGGTTTT+GGG | - | chr3_4:70292880-70292899 | Msa0518480:intron | 20.0% |
| !!! | CTTATATTTTAGTATGTTAC+GGG | - | chr3_4:70293190-70293209 | Msa0518480:intron | 20.0% |
| !! | TATGAATAGAGAAATATTAC+TGG | - | chr3_4:70293481-70293500 | Msa0518480:intron | 20.0% |
| !! | ATGAATAGAGAAATATTACT+GGG | - | chr3_4:70293482-70293501 | Msa0518480:intron | 20.0% |
| !! | AGGTATTTACAAAATTACAT+AGG | - | chr3_4:70293760-70293779 | Msa0518480:intron | 20.0% |
| !!! | TTTCTAAATTGTATTTTCAC+AGG | - | chr3_4:70293910-70293929 | Msa0518480:intron | 20.0% |
| !!! | TTCTAAATTGTATTTTCACA+GGG | - | chr3_4:70293911-70293930 | Msa0518480:intron | 20.0% |
| !!! | TTAGTTTTCATGACTATGTT+TGG | + | chr3_4:70290693-70290712 | None:intergenic | 25.0% |
| ! | CATGAAAACTAAGAAATTCA+AGG | - | chr3_4:70290701-70290720 | Msa0518480:three_prime_UTR | 25.0% |
| !!! | TTGTGTTATATCTTGTTTTC+AGG | - | chr3_4:70291054-70291073 | Msa0518480:CDS | 25.0% |
| !! | ACTGTAATTTGTATAGATTG+TGG | - | chr3_4:70291128-70291147 | Msa0518480:intron | 25.0% |
| !!! | GCAATTTGCGTTTATTTTAT+TGG | - | chr3_4:70291210-70291229 | Msa0518480:CDS | 25.0% |
| ! | AGATAAGACATAATGATTCT+TGG | - | chr3_4:70291390-70291409 | Msa0518480:intron | 25.0% |
| !! | CTATCATTTTGTGTTAGTTA+TGG | - | chr3_4:70291662-70291681 | Msa0518480:intron | 25.0% |
| ! | CAGAGAAATTAGATCATTAA+TGG | + | chr3_4:70291792-70291811 | None:intergenic | 25.0% |
| ! | TCTCAGGAAATATGTTTAAT+AGG | - | chr3_4:70292095-70292114 | Msa0518480:intron | 25.0% |
| !! | TTGAGATTGACGAAAAATTT+TGG | - | chr3_4:70292437-70292456 | Msa0518480:intron | 25.0% |
| !! | TGAGATTGACGAAAAATTTT+GGG | - | chr3_4:70292438-70292457 | Msa0518480:intron | 25.0% |
| ! | TCTCTTACACAAAAATATGA+AGG | - | chr3_4:70292708-70292727 | Msa0518480:CDS | 25.0% |
| ! | CTCTTACACAAAAATATGAA+GGG | - | chr3_4:70292709-70292728 | Msa0518480:CDS | 25.0% |
| ! | AATATGAAGGGTAAAAACAA+AGG | - | chr3_4:70292721-70292740 | Msa0518480:CDS | 25.0% |
| !! | GGATAGTTTTTAAATGGTTT+TGG | - | chr3_4:70292879-70292898 | Msa0518480:intron | 25.0% |
| !!! | TAGAAACTGACTTTTATTGA+TGG | + | chr3_4:70293059-70293078 | None:intergenic | 25.0% |
| ! | AGATGAATGCACAATATAAA+TGG | + | chr3_4:70293283-70293302 | None:intergenic | 25.0% |
| ! | TTGACTGTCATTAATTATGA+AGG | - | chr3_4:70293612-70293631 | Msa0518480:intron | 25.0% |
| !!! | ATATTTTTACTTTGTCTGTG+AGG | - | chr3_4:70293855-70293874 | Msa0518480:intron | 25.0% |
| !!! | TGAATTTAAAGCAACTTTTC+AGG | + | chr3_4:70294462-70294481 | None:intergenic | 25.0% |
| CTTAAACTCAAATACTACGA+TGG | + | chr3_4:70290762-70290781 | None:intergenic | 30.0% | |
| GGGTAACCATAAAATCAATT+CGG | + | chr3_4:70290940-70290959 | None:intergenic | 30.0% | |
| ATGATCAATTAAGCCTTCTT+AGG | - | chr3_4:70290990-70291009 | Msa0518480:three_prime_UTR | 30.0% | |
| ACAAGATATAACACAACTCA+AGG | + | chr3_4:70291050-70291069 | None:intergenic | 30.0% | |
| TCTTTGTAGAAGCTTATTTC+AGG | - | chr3_4:70291157-70291176 | Msa0518480:intron | 30.0% | |
| TAAGACATAATGATTCTTGG+TGG | - | chr3_4:70291393-70291412 | Msa0518480:intron | 30.0% | |
| !! | GATGATAGTTGTAGTTTGTT+AGG | - | chr3_4:70291415-70291434 | Msa0518480:intron | 30.0% |
| !!! | GATAGAGGCAGATTATTTTT+TGG | - | chr3_4:70291633-70291652 | Msa0518480:intron | 30.0% |
| !! | ATAAGAGTATTGTTCTCTGA+TGG | - | chr3_4:70291687-70291706 | Msa0518480:intron | 30.0% |
| ATTGCTTGCAAGATTAAAGA+TGG | + | chr3_4:70292034-70292053 | None:intergenic | 30.0% | |
| CAATCCTTTAACGTAATAGT+TGG | - | chr3_4:70292239-70292258 | Msa0518480:intron | 30.0% | |
| CAAAAATCAGAAGAAACTTG+TGG | + | chr3_4:70292288-70292307 | None:intergenic | 30.0% | |
| !! | AAAGCTTTGGAATGAAACAA+AGG | - | chr3_4:70292401-70292420 | Msa0518480:intron | 30.0% |
| TGCTTCTTTCAGTTATATGT+CGG | - | chr3_4:70292528-70292547 | Msa0518480:intron | 30.0% | |
| AATCTGGCACAAAATAAACA+GGG | + | chr3_4:70292579-70292598 | None:intergenic | 30.0% | |
| TAATCTGGCACAAAATAAAC+AGG | + | chr3_4:70292580-70292599 | None:intergenic | 30.0% | |
| AGTTTGTAAATCTGATAGAG+TGG | - | chr3_4:70292659-70292678 | Msa0518480:intron | 30.0% | |
| !! | ACTTGTTTGACTTCTTTTTG+TGG | - | chr3_4:70292748-70292767 | Msa0518480:CDS | 30.0% |
| !!! | AGTTTTTAAATGGTTTTGGG+AGG | - | chr3_4:70292883-70292902 | Msa0518480:intron | 30.0% |
| !!! | GTTTTTAAATGGTTTTGGGA+GGG | - | chr3_4:70292884-70292903 | Msa0518480:intron | 30.0% |
| ! | ATAAGTACATGGTGTGTTTT+TGG | - | chr3_4:70293388-70293407 | Msa0518480:intron | 30.0% |
| TGTTTCTTCAAGCTAAATCA+TGG | + | chr3_4:70293426-70293445 | None:intergenic | 30.0% | |
| ATTATGAAGGTTGTCTTCTT+CGG | - | chr3_4:70293625-70293644 | Msa0518480:intron | 30.0% | |
| ! | GAAATTACTTGCTGCATATT+TGG | - | chr3_4:70293877-70293896 | Msa0518480:intron | 30.0% |
| !!! | AATCGTGCATTGATTTTCAA+GGG | + | chr3_4:70294005-70294024 | None:intergenic | 30.0% |
| TTGAAAATCAATGCACGATT+GGG | - | chr3_4:70294005-70294024 | Msa0518480:intron | 30.0% | |
| ! | GCAACAGTTTGTTCAAATTT+GGG | + | chr3_4:70294103-70294122 | None:intergenic | 30.0% |
| ! | TGCAACAGTTTGTTCAAATT+TGG | + | chr3_4:70294104-70294123 | None:intergenic | 30.0% |
| ! | TCTATTTTCATTACACAGCA+GGG | + | chr3_4:70294173-70294192 | None:intergenic | 30.0% |
| ! | ATCTATTTTCATTACACAGC+AGG | + | chr3_4:70294174-70294193 | None:intergenic | 30.0% |
| TTCTCATTTGAAGGTGATTA+TGG | + | chr3_4:70294263-70294282 | None:intergenic | 30.0% | |
| AAATTCTTCAGTCAGTTACA+GGG | + | chr3_4:70294512-70294531 | None:intergenic | 30.0% | |
| TAAATTCTTCAGTCAGTTAC+AGG | + | chr3_4:70294513-70294532 | None:intergenic | 30.0% | |
| ! | ACTGAAGAATTTAGTTCACA+TGG | - | chr3_4:70294520-70294539 | Msa0518480:intron | 30.0% |
| ! | TGGATACCTATCGACATTTT+GGG | + | chr3_4:70290960-70290979 | None:intergenic | 35.0% |
| ATATCTCGAGTATCCTAAGA+AGG | + | chr3_4:70291006-70291025 | None:intergenic | 35.0% | |
| ATATAACACAACTCAAGGAC+AGG | + | chr3_4:70291045-70291064 | None:intergenic | 35.0% | |
| AGTTGCCCATTAGAATTACA+TGG | - | chr3_4:70291095-70291114 | Msa0518480:intron | 35.0% | |
| GTTGCCCATTAGAATTACAT+GGG | - | chr3_4:70291096-70291115 | Msa0518480:intron | 35.0% | |
| CAGTCCCATGTAATTCTAAT+GGG | + | chr3_4:70291103-70291122 | None:intergenic | 35.0% | |
| ACAGTCCCATGTAATTCTAA+TGG | + | chr3_4:70291104-70291123 | None:intergenic | 35.0% | |
| ATTGCTGACCTTTGGATTAA+GGG | + | chr3_4:70291195-70291214 | None:intergenic | 35.0% | |
| AATTGCTGACCTTTGGATTA+AGG | + | chr3_4:70291196-70291215 | None:intergenic | 35.0% | |
| AGAGAAGTTAAACAGTGTAG+TGG | - | chr3_4:70291585-70291604 | Msa0518480:intron | 35.0% | |
| GAGAAGTTAAACAGTGTAGT+GGG | - | chr3_4:70291586-70291605 | Msa0518480:intron | 35.0% | |
| TAGTGGGAGTCAGTTATATA+GGG | - | chr3_4:70291602-70291621 | Msa0518480:intron | 35.0% | |
| AACAGTCTCTTAAGTTTCTC+AGG | - | chr3_4:70292079-70292098 | Msa0518480:intron | 35.0% | |
| ATGTGATCAGAAGTGATAAG+TGG | + | chr3_4:70292127-70292146 | None:intergenic | 35.0% | |
| CTAATATGTGGTCTTTCAAC+TGG | - | chr3_4:70292151-70292170 | Msa0518480:intron | 35.0% | |
| AGCTCCAACTATTACGTTAA+AGG | + | chr3_4:70292246-70292265 | None:intergenic | 35.0% | |
| ! | AACATTGTGTTCTAAACCAG+TGG | - | chr3_4:70292332-70292351 | Msa0518480:intron | 35.0% |
| ! | ACATTGTGTTCTAAACCAGT+GGG | - | chr3_4:70292333-70292352 | Msa0518480:intron | 35.0% |
| GGCAGAAGCAATTGAAAATT+TGG | - | chr3_4:70292354-70292373 | Msa0518480:intron | 35.0% | |
| GCAATTGAAAATTTGGACCA+TGG | - | chr3_4:70292361-70292380 | Msa0518480:intron | 35.0% | |
| TCAATCTCAATATCACCATC+AGG | + | chr3_4:70292427-70292446 | None:intergenic | 35.0% | |
| ! | GATTGACGAAAAATTTTGGG+AGG | - | chr3_4:70292441-70292460 | Msa0518480:intron | 35.0% |
| ! | TGTCGGTTATTTGTATTGAG+TGG | - | chr3_4:70292545-70292564 | Msa0518480:intron | 35.0% |
| TGTAAGAGAGATACAGTTAG+GGG | + | chr3_4:70292697-70292716 | None:intergenic | 35.0% | |
| GTGTAAGAGAGATACAGTTA+GGG | + | chr3_4:70292698-70292717 | None:intergenic | 35.0% | |
| TGTGTAAGAGAGATACAGTT+AGG | + | chr3_4:70292699-70292718 | None:intergenic | 35.0% | |
| ! | CTTCTTTTTGTGGCAGTTAT+CGG | - | chr3_4:70292758-70292777 | Msa0518480:CDS | 35.0% |
| CAGTTACGTATAGCAGTTAT+TGG | - | chr3_4:70292801-70292820 | Msa0518480:CDS | 35.0% | |
| AGAAAAGGAGAACGTGATTA+TGG | - | chr3_4:70292857-70292876 | Msa0518480:intron | 35.0% | |
| GAAAAGGAGAACGTGATTAT+GGG | - | chr3_4:70292858-70292877 | Msa0518480:intron | 35.0% | |
| ATCAGGTCTCTCAAATTTCT+TGG | - | chr3_4:70292940-70292959 | Msa0518480:intron | 35.0% | |
| TAAGAACATCCAGAATGCAA+CGG | + | chr3_4:70293174-70293193 | None:intergenic | 35.0% | |
| AACAGGAAAAATAGTTGCCA+AGG | + | chr3_4:70293225-70293244 | None:intergenic | 35.0% | |
| !! | TGGCAACTATTTTTCCTGTT+TGG | - | chr3_4:70293225-70293244 | Msa0518480:intron | 35.0% |
| !! | CTATTTTTCCTGTTTGGCTT+TGG | - | chr3_4:70293231-70293250 | Msa0518480:intron | 35.0% |
| GTACTTATGTCAGAAGAGAT+AGG | + | chr3_4:70293376-70293395 | None:intergenic | 35.0% | |
| TCTCTTCTGACATAAGTACA+TGG | - | chr3_4:70293377-70293396 | Msa0518480:intron | 35.0% | |
| CTTATTATGCTAGCAACACA+TGG | - | chr3_4:70293532-70293551 | Msa0518480:intron | 35.0% | |
| ! | TGTGATGCTTTTCTTGTACT+AGG | - | chr3_4:70293700-70293719 | Msa0518480:intron | 35.0% |
| ! | GTGATGCTTTTCTTGTACTA+GGG | - | chr3_4:70293701-70293720 | Msa0518480:intron | 35.0% |
| !!! | CAATCGTGCATTGATTTTCA+AGG | + | chr3_4:70294006-70294025 | None:intergenic | 35.0% |
| CTTGAAAATCAATGCACGAT+TGG | - | chr3_4:70294004-70294023 | Msa0518480:intron | 35.0% | |
| ! | ATTTGAACCTTGTGTTGTTC+AGG | - | chr3_4:70294213-70294232 | Msa0518480:intron | 35.0% |
| TACATTACCTGAACAACACA+AGG | + | chr3_4:70294223-70294242 | None:intergenic | 35.0% | |
| ! | TTGTGTTGTTCAGGTAATGT+AGG | - | chr3_4:70294222-70294241 | Msa0518480:intron | 35.0% |
| CATTTGAAGGTGATTATGGT+CGG | + | chr3_4:70294259-70294278 | None:intergenic | 35.0% | |
| AATTCTTCAGTCAGTTACAG+GGG | + | chr3_4:70294511-70294530 | None:intergenic | 35.0% | |
| !! | AGCTGGCCGAATTGATTTTA+TGG | - | chr3_4:70290931-70290950 | Msa0518480:three_prime_UTR | 40.0% |
| TGGTTACCCAAAATGTCGAT+AGG | - | chr3_4:70290951-70290970 | Msa0518480:three_prime_UTR | 40.0% | |
| ! | CTGGATACCTATCGACATTT+TGG | + | chr3_4:70290961-70290980 | None:intergenic | 40.0% |
| TTGGATTAAGGGACTTCAAC+TGG | + | chr3_4:70291184-70291203 | None:intergenic | 40.0% | |
| GTTGAAGTCCCTTAATCCAA+AGG | - | chr3_4:70291184-70291203 | Msa0518480:intron | 40.0% | |
| AAACGCAAATTGCTGACCTT+TGG | + | chr3_4:70291203-70291222 | None:intergenic | 40.0% | |
| AGCATAAACCCGTTGAATAC+TGG | + | chr3_4:70291499-70291518 | None:intergenic | 40.0% | |
| GGGTTTATGCTTGAACTAGA+CGG | - | chr3_4:70291508-70291527 | Msa0518480:CDS | 40.0% | |
| ATGCTTGAACTAGACGGAAT+AGG | - | chr3_4:70291514-70291533 | Msa0518480:CDS | 40.0% | |
| ! | GTTTGTTGGGATTATCCATG+AGG | - | chr3_4:70291551-70291570 | Msa0518480:CDS | 40.0% |
| ! | GTAGTGGGAGTCAGTTATAT+AGG | - | chr3_4:70291601-70291620 | Msa0518480:intron | 40.0% |
| TATTGTTCTCTGATGGAGCT+TGG | - | chr3_4:70291694-70291713 | Msa0518480:intron | 40.0% | |
| ATCCAGTGAAAGCTTCCAAA+TGG | - | chr3_4:70291922-70291941 | Msa0518480:intron | 40.0% | |
| AACCATTTGGAAGCTTTCAC+TGG | + | chr3_4:70291927-70291946 | None:intergenic | 40.0% | |
| GTGAAAGCTTCCAAATGGTT+TGG | - | chr3_4:70291927-70291946 | Msa0518480:intron | 40.0% | |
| ! | CTTCCAAATGGTTTGGACTT+CGG | - | chr3_4:70291934-70291953 | Msa0518480:intron | 40.0% |
| ! | TTCCAAATGGTTTGGACTTC+GGG | - | chr3_4:70291935-70291954 | Msa0518480:intron | 40.0% |
| GATCACATGCGTCTAATATG+TGG | - | chr3_4:70292139-70292158 | Msa0518480:intron | 40.0% | |
| !! | TGACGAAAAATTTTGGGAGG+AGG | - | chr3_4:70292444-70292463 | Msa0518480:intron | 40.0% |
| TGTTCTCTTGAAGTATAGCG+CGG | - | chr3_4:70293129-70293148 | Msa0518480:intron | 40.0% | |
| GGAAAAATAGTTGCCAAGGA+AGG | + | chr3_4:70293221-70293240 | None:intergenic | 40.0% | |
| TGAAAACATTGATGTGCGCT+CGG | - | chr3_4:70293320-70293339 | Msa0518480:intron | 40.0% | |
| AGCTTGAAGAAACAGACTAC+AGG | - | chr3_4:70293432-70293451 | Msa0518480:intron | 40.0% | |
| ! | CTTCGGTGATAATGTTCCAA+AGG | - | chr3_4:70293642-70293661 | Msa0518480:intron | 40.0% |
| AGATGCTTCCATTGCCATAT+CGG | + | chr3_4:70293674-70293693 | None:intergenic | 40.0% | |
| ATCCGAACACTGTCACTAAA+GGG | + | chr3_4:70293786-70293805 | None:intergenic | 40.0% | |
| GTATGGCTTGAAAAGTGATC+TGG | - | chr3_4:70294032-70294051 | Msa0518480:CDS | 40.0% | |
| !! | ATTGCCAAGAGTACTTGACA+TGG | - | chr3_4:70294134-70294153 | Msa0518480:intron | 40.0% |
| !! | TTGCCAAGAGTACTTGACAT+GGG | - | chr3_4:70294135-70294154 | Msa0518480:intron | 40.0% |
| ACGCTGGTATTCTCATTTGA+AGG | + | chr3_4:70294272-70294291 | None:intergenic | 40.0% | |
| AAATGAGAATACCAGCGTGT+AGG | - | chr3_4:70294274-70294293 | Msa0518480:CDS | 40.0% | |
| GAAGTTAAGCTTTCAGAGTC+TGG | - | chr3_4:70294322-70294341 | Msa0518480:CDS | 40.0% | |
| CTGCAAGAGATTATGCTTGT+TGG | - | chr3_4:70294374-70294393 | Msa0518480:CDS | 40.0% | |
| !!! | AAAGCAACTTTTCAGGTCAC+TGG | + | chr3_4:70294455-70294474 | None:intergenic | 40.0% |
| ! | TATTGGGCTAGAAGCTATGC+TGG | - | chr3_4:70290845-70290864 | Msa0518480:three_prime_UTR | 45.0% |
| ! | ATTGGGCTAGAAGCTATGCT+GGG | - | chr3_4:70290846-70290865 | Msa0518480:three_prime_UTR | 45.0% |
| AAAGCACAATGAGCAGCAGA+TGG | + | chr3_4:70290896-70290915 | None:intergenic | 45.0% | |
| ATCTGCTGCTCATTGTGCTT+TGG | - | chr3_4:70290895-70290914 | Msa0518480:three_prime_UTR | 45.0% | |
| CGATCTGACGATCAAAGTCA+TGG | - | chr3_4:70291299-70291318 | Msa0518480:intron | 45.0% | |
| TTGGCCCACTTCTCTCATAT+GGG | + | chr3_4:70291443-70291462 | None:intergenic | 45.0% | |
| TTTGGCCCACTTCTCTCATA+TGG | + | chr3_4:70291444-70291463 | None:intergenic | 45.0% | |
| TATGAGAGAAGTGGGCCAAA+TGG | - | chr3_4:70291444-70291463 | Msa0518480:intron | 45.0% | |
| ATGAGAGAAGTGGGCCAAAT+GGG | - | chr3_4:70291445-70291464 | Msa0518480:intron | 45.0% | |
| ACCCGTTGAATACTGGACTA+GGG | + | chr3_4:70291492-70291511 | None:intergenic | 45.0% | |
| AACCCGTTGAATACTGGACT+AGG | + | chr3_4:70291493-70291512 | None:intergenic | 45.0% | |
| GGAATAGGAAAGAGCAGAGT+GGG | - | chr3_4:70291529-70291548 | Msa0518480:CDS | 45.0% | |
| ! | AAAGAGCAGAGTGGGTTTGT+TGG | - | chr3_4:70291537-70291556 | Msa0518480:CDS | 45.0% |
| ! | AAGAGCAGAGTGGGTTTGTT+GGG | - | chr3_4:70291538-70291557 | Msa0518480:CDS | 45.0% |
| TATAGGGACTGAAGCGATAG+AGG | - | chr3_4:70291618-70291637 | Msa0518480:intron | 45.0% | |
| TTGAGAGCAGAAGCTTTCAC+TGG | + | chr3_4:70291895-70291914 | None:intergenic | 45.0% | |
| TACCCGAAGTCCAAACCATT+TGG | + | chr3_4:70291940-70291959 | None:intergenic | 45.0% | |
| TGGACTTCGGGTAACATTAC+TGG | - | chr3_4:70291947-70291966 | Msa0518480:intron | 45.0% | |
| GTGGTCTTTCAACTGGAAGT+TGG | - | chr3_4:70292158-70292177 | Msa0518480:intron | 45.0% | |
| TTTCAATTGCTTCTGCCCAC+TGG | + | chr3_4:70292351-70292370 | None:intergenic | 45.0% | |
| ! | CAAAGCTTTTGTCTGACCCA+GGG | + | chr3_4:70292390-70292409 | None:intergenic | 45.0% |
| GGAATGAAACAAAGGCCTGA+TGG | - | chr3_4:70292409-70292428 | Msa0518480:intron | 45.0% | |
| TGAGAACACCATTGCACTTC+TGG | + | chr3_4:70292489-70292508 | None:intergenic | 45.0% | |
| GGTGTTCTCAAACCTGATGT+AGG | - | chr3_4:70292499-70292518 | Msa0518480:intron | 45.0% | |
| GAAGCAAGATGACCTACATC+AGG | + | chr3_4:70292514-70292533 | None:intergenic | 45.0% | |
| AGACCGATCTCTCGAATTCT+TGG | - | chr3_4:70292909-70292928 | Msa0518480:intron | 45.0% | |
| CCTCCAAGAATTCGAGAGAT+CGG | + | chr3_4:70292915-70292934 | None:intergenic | 45.0% | |
| CGATCTCTCGAATTCTTGGA+GGG | - | chr3_4:70292913-70292932 | Msa0518480:intron | 45.0% | |
| AATTCTTGGAGGGAGAGATC+AGG | - | chr3_4:70292923-70292942 | Msa0518480:intron | 45.0% | |
| CAGAATGCAACGGAACAAAC+AGG | + | chr3_4:70293164-70293183 | None:intergenic | 45.0% | |
| CTGTTTGTTCCGTTGCATTC+TGG | - | chr3_4:70293162-70293181 | Msa0518480:intron | 45.0% | |
| GTTACGGGATTATCCTTCCT+TGG | - | chr3_4:70293205-70293224 | Msa0518480:intron | 45.0% | |
| TAGTCTAGCCAAAGCCAAAC+AGG | + | chr3_4:70293242-70293261 | None:intergenic | 45.0% | |
| GAAGAGATAGGTCAGCATCA+AGG | + | chr3_4:70293364-70293383 | None:intergenic | 45.0% | |
| TCCAAAGGAAAGAGCCGATA+TGG | - | chr3_4:70293657-70293676 | Msa0518480:intron | 45.0% | |
| GACAAGTCGAAAAGCAGACA+TGG | + | chr3_4:70293740-70293759 | None:intergenic | 45.0% | |
| !! | TGTCTGCTTTTCGACTTGTC+AGG | - | chr3_4:70293740-70293759 | Msa0518480:intron | 45.0% |
| CATCCGAACACTGTCACTAA+AGG | + | chr3_4:70293787-70293806 | None:intergenic | 45.0% | |
| TCGGATGAACGAGAGAGATT+TGG | - | chr3_4:70293800-70293819 | Msa0518480:intron | 45.0% | |
| GCTACTGCAATCGTCAATGT+AGG | - | chr3_4:70293954-70293973 | Msa0518480:intron | 45.0% | |
| AATCAATGCACGATTGGGTG+AGG | - | chr3_4:70294010-70294029 | Msa0518480:intron | 45.0% | |
| GCTTGAAAAGTGATCTGGAC+TGG | - | chr3_4:70294037-70294056 | Msa0518480:CDS | 45.0% | |
| GATCCCATGTCAAGTACTCT+TGG | + | chr3_4:70294141-70294160 | None:intergenic | 45.0% | |
| TCTAGCCCAATATCTCCTCC+TGG | + | chr3_4:70290837-70290856 | None:intergenic | 50.0% | |
| TTGGCAGCTTTCGAGAAAGC+TGG | - | chr3_4:70290914-70290933 | Msa0518480:three_prime_UTR | 50.0% | |
| ATGGGCAACTACCAGCTTGA+TGG | + | chr3_4:70291085-70291104 | None:intergenic | 50.0% | |
| AGGACCCCATATGAGAGAAG+TGG | - | chr3_4:70291435-70291454 | Msa0518480:intron | 50.0% | |
| GGACCCCATATGAGAGAAGT+GGG | - | chr3_4:70291436-70291455 | Msa0518480:intron | 50.0% | |
| TGGCCCACTTCTCTCATATG+GGG | + | chr3_4:70291442-70291461 | None:intergenic | 50.0% | |
| TGCTGTTCTACCAGCCCATT+TGG | + | chr3_4:70291462-70291481 | None:intergenic | 50.0% | |
| ! | CGTTGAATACTGGACTAGGG+GGG | + | chr3_4:70291489-70291508 | None:intergenic | 50.0% |
| ! | CCGTTGAATACTGGACTAGG+GGG | + | chr3_4:70291490-70291509 | None:intergenic | 50.0% |
| CCCCCTAGTCCAGTATTCAA+CGG | - | chr3_4:70291487-70291506 | Msa0518480:CDS | 50.0% | |
| ! | CCCGTTGAATACTGGACTAG+GGG | + | chr3_4:70291491-70291510 | None:intergenic | 50.0% |
| CCCCTAGTCCAGTATTCAAC+GGG | - | chr3_4:70291488-70291507 | Msa0518480:CDS | 50.0% | |
| CGGAATAGGAAAGAGCAGAG+TGG | - | chr3_4:70291528-70291547 | Msa0518480:CDS | 50.0% | |
| AATTTGGACCATGGAAGCCC+TGG | - | chr3_4:70292370-70292389 | Msa0518480:intron | 50.0% | |
| ATTTGGACCATGGAAGCCCT+GGG | - | chr3_4:70292371-70292390 | Msa0518480:intron | 50.0% | |
| ! | CCAAAGCTTTTGTCTGACCC+AGG | + | chr3_4:70292391-70292410 | None:intergenic | 50.0% |
| CCTGGGTCAGACAAAAGCTT+TGG | - | chr3_4:70292388-70292407 | Msa0518480:intron | 50.0% | |
| CATTGCACTTCTGGCAGGTT+GGG | + | chr3_4:70292480-70292499 | None:intergenic | 50.0% | |
| AACACCATTGCACTTCTGGC+AGG | + | chr3_4:70292485-70292504 | None:intergenic | 50.0% | |
| CCGATCTCTCGAATTCTTGG+AGG | - | chr3_4:70292912-70292931 | Msa0518480:intron | 50.0% | |
| TGAAGTATAGCGCGGCTGAA+TGG | - | chr3_4:70293137-70293156 | Msa0518480:intron | 50.0% | |
| GAAGTATAGCGCGGCTGAAT+GGG | - | chr3_4:70293138-70293157 | Msa0518480:intron | 50.0% | |
| !! | GCCATATCGGCTCTTTCCTT+TGG | + | chr3_4:70293661-70293680 | None:intergenic | 50.0% |
| GGAAAGAGCCGATATGGCAA+TGG | - | chr3_4:70293663-70293682 | Msa0518480:intron | 50.0% | |
| GGCCCTTTAGTGACAGTGTT+CGG | - | chr3_4:70293781-70293800 | Msa0518480:intron | 50.0% | |
| ! | TTTTCACAGGGCAGCTCATG+AGG | - | chr3_4:70293923-70293942 | Msa0518480:intron | 50.0% |
| ATGCACGATTGGGTGAGGTA+TGG | - | chr3_4:70294015-70294034 | Msa0518480:intron | 50.0% | |
| GAGAATACCAGCGTGTAGGT+AGG | - | chr3_4:70294278-70294297 | Msa0518480:CDS | 50.0% | |
| TGACATTCCTACCTACACGC+TGG | + | chr3_4:70294288-70294307 | None:intergenic | 50.0% | |
| TTCTTCGTTCAAGCCGAGCC+AGG | - | chr3_4:70290816-70290835 | Msa0518480:three_prime_UTR | 55.0% | |
| CCCAATATCTCCTCCTGGCT+CGG | + | chr3_4:70290832-70290851 | None:intergenic | 55.0% | |
| CCGAGCCAGGAGGAGATATT+GGG | - | chr3_4:70290829-70290848 | Msa0518480:three_prime_UTR | 55.0% | |
| CTAGAAGCTATGCTGGGTGG+AGG | - | chr3_4:70290852-70290871 | Msa0518480:three_prime_UTR | 55.0% | |
| ATGAGCAGCAGATGGCTGTG+CGG | + | chr3_4:70290888-70290907 | None:intergenic | 55.0% | |
| TTCAGGCTGCACCATCAAGC+TGG | - | chr3_4:70291071-70291090 | Msa0518480:intron | 55.0% | |
| CTCTCTCACTCTCTGCCTCA+TGG | + | chr3_4:70291569-70291588 | None:intergenic | 55.0% | |
| !! | CTGATGGAGCTTGGCTCTGT+TGG | - | chr3_4:70291703-70291722 | Msa0518480:intron | 55.0% |
| CCATTGCACTTCTGGCAGGT+TGG | + | chr3_4:70292481-70292500 | None:intergenic | 55.0% | |
| ! | CCAACCTGCCAGAAGTGCAA+TGG | - | chr3_4:70292478-70292497 | Msa0518480:intron | 55.0% |
| TTACACAGCAGGGACGCTGA+TGG | + | chr3_4:70294163-70294182 | None:intergenic | 55.0% | |
| TTCGTTCAAGCCGAGCCAGG+AGG | - | chr3_4:70290819-70290838 | Msa0518480:three_prime_UTR | 60.0% | |
| GCCGAGCCAGGAGGAGATAT+TGG | - | chr3_4:70290828-70290847 | Msa0518480:three_prime_UTR | 60.0% | |
| GGGCTAGAAGCTATGCTGGG+TGG | - | chr3_4:70290849-70290868 | Msa0518480:three_prime_UTR | 60.0% | |
| GAGAAGTGGGCCAAATGGGC+TGG | - | chr3_4:70291449-70291468 | Msa0518480:intron | 60.0% | |
| TGTCTGACCCAGGGCTTCCA+TGG | + | chr3_4:70292381-70292400 | None:intergenic | 60.0% | |
| ! | GCACTTCTGGCAGGTTGGGA+TGG | + | chr3_4:70292476-70292495 | None:intergenic | 60.0% |
| CACAGGGCAGCTCATGAGGC+TGG | - | chr3_4:70293927-70293946 | Msa0518480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 70290650 | 70294571 | 70290650 | ID=Msa0518480;Name=Msa0518480 |
| chr3_4 | mRNA | 70290650 | 70294571 | 70290650 | ID=Msa0518480-mRNA-1;Parent=Msa0518480;Name=Msa0518480-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.66|0.71|1|1|1|7|389|257 |
| chr3_4 | exon | 70290650 | 70291089 | 70290650 | ID=Msa0518480-mRNA-1:exon:19062;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70291190 | 70291289 | 70291190 | ID=Msa0518480-mRNA-1:exon:19061;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70291460 | 70291587 | 70291460 | ID=Msa0518480-mRNA-1:exon:19060;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70292672 | 70292869 | 70292672 | ID=Msa0518480-mRNA-1:exon:19059;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70294016 | 70294145 | 70294016 | ID=Msa0518480-mRNA-1:exon:19058;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70294249 | 70294409 | 70294249 | ID=Msa0518480-mRNA-1:exon:19057;Parent=Msa0518480-mRNA-1 |
| chr3_4 | exon | 70294566 | 70294571 | 70294566 | ID=Msa0518480-mRNA-1:exon:19056;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70294566 | 70294571 | 70294566 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70294249 | 70294409 | 70294249 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70294016 | 70294145 | 70294016 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70292672 | 70292869 | 70292672 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70291460 | 70291587 | 70291460 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70291190 | 70291289 | 70291190 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | CDS | 70291039 | 70291089 | 70291039 | ID=Msa0518480-mRNA-1:cds;Parent=Msa0518480-mRNA-1 |
| chr3_4 | three_prime_UTR | 70290650 | 70291038 | 70290650 | ID=Msa0518480-mRNA-1:three_prime_utr;Parent=Msa0518480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
