Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611930 | XP_024636671.1 | 88.816 | 152 | 2 | 1 | 1 | 137 | 270 | 421 | 1.96e-87 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611930 | sp|P52026|DPO1_GEOSE | 47.945 | 73 | 37 | 1 | 3 | 75 | 159 | 230 | 2.63e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0611930 | 0.810996 | 8.732371e-51 | -8.615850e-47 |
| Msa0027540 | Msa0611930 | 0.819379 | 1.197663e-52 | -8.615850e-47 |
| Msa0030730 | Msa0611930 | 0.807476 | 4.961024e-50 | -8.615850e-47 |
| Msa0044710 | Msa0611930 | 0.800027 | 1.747313e-48 | -8.615850e-47 |
| Msa0075310 | Msa0611930 | 0.821787 | 3.353068e-53 | -8.615850e-47 |
| Msa0084680 | Msa0611930 | 0.805681 | 1.187299e-49 | -8.615850e-47 |
| Msa0120330 | Msa0611930 | 0.807673 | 4.505304e-50 | -8.615850e-47 |
| Msa0611930 | Msa0619330 | 0.808550 | 2.931614e-50 | -8.615850e-47 |
| Msa0611930 | Msa0625530 | -0.815179 | 1.055572e-51 | -8.615850e-47 |
| Msa0611930 | Msa0629370 | 0.810651 | 1.036941e-50 | -8.615850e-47 |
| Msa0611930 | Msa0663090 | 0.800832 | 1.197637e-48 | -8.615850e-47 |
| Msa0611930 | Msa0669850 | 0.809552 | 1.788666e-50 | -8.615850e-47 |
| Msa0611930 | Msa0677820 | 0.801789 | 7.628724e-49 | -8.615850e-47 |
| Msa0611930 | Msa0681890 | 0.807297 | 5.414360e-50 | -8.615850e-47 |
| Msa0611930 | Msa0690350 | 0.809193 | 2.135882e-50 | -8.615850e-47 |
| Msa0611930 | Msa0714600 | 0.801614 | 8.286574e-49 | -8.615850e-47 |
| Msa0611930 | Msa0725480 | -0.806197 | 9.244755e-50 | -8.615850e-47 |
| Msa0611930 | Msa0730180 | 0.817097 | 3.934538e-52 | -8.615850e-47 |
| Msa0611930 | Msa0766100 | -0.804485 | 2.111956e-49 | -8.615850e-47 |
| Msa0611930 | Msa0797220 | 0.802056 | 6.722116e-49 | -8.615850e-47 |
| Msa0611930 | Msa0802210 | 0.801457 | 8.923105e-49 | -8.615850e-47 |
| Msa0611930 | Msa0837990 | 0.816217 | 6.197488e-52 | -8.615850e-47 |
| Msa0611930 | Msa0843690 | 0.811566 | 6.565101e-51 | -8.615850e-47 |
| Msa0611930 | Msa0848360 | 0.806391 | 8.415734e-50 | -8.615850e-47 |
| Msa0611930 | Msa0854570 | 0.803778 | 2.963241e-49 | -8.615850e-47 |
| Msa0611930 | Msa0890250 | 0.831524 | 1.589812e-55 | -8.615850e-47 |
| Msa0611930 | Msa0925160 | 0.809084 | 2.253412e-50 | -8.615850e-47 |
| Msa0611930 | Msa0930330 | 0.809709 | 1.654482e-50 | -8.615850e-47 |
| Msa0611930 | Msa0931610 | 0.806784 | 6.953939e-50 | -8.615850e-47 |
| Msa0611930 | Msa0990520 | 0.809197 | 2.131692e-50 | -8.615850e-47 |
| Msa0611930 | Msa1018790 | 0.809496 | 1.838449e-50 | -8.615850e-47 |
| Msa0611930 | Msa1044340 | 0.802592 | 5.214278e-49 | -8.615850e-47 |
| Msa0611930 | Msa1073840 | 0.805549 | 1.264922e-49 | -8.615850e-47 |
| Msa0611930 | Msa1106560 | 0.805956 | 1.039395e-49 | -8.615850e-47 |
| Msa0611930 | Msa1129560 | 0.802913 | 4.477741e-49 | -8.615850e-47 |
| Msa0611930 | Msa1133660 | 0.818688 | 1.720104e-52 | -8.615850e-47 |
| Msa0611930 | Msa1159100 | 0.811625 | 6.375250e-51 | -8.615850e-47 |
| Msa0611930 | Msa1171690 | 0.812062 | 5.122061e-51 | -8.615850e-47 |
| Msa0611930 | Msa1210770 | 0.807676 | 4.500558e-50 | -8.615850e-47 |
| Msa0611930 | Msa1224670 | 0.802189 | 6.311847e-49 | -8.615850e-47 |
| Msa0611930 | Msa1280120 | 0.811589 | 6.490365e-51 | -8.615850e-47 |
| Msa0611930 | Msa1323060 | 0.816108 | 6.552505e-52 | -8.615850e-47 |
| Msa0611930 | Msa1341930 | 0.811868 | 5.646118e-51 | -8.615850e-47 |
| Msa0611930 | Msa1352290 | 0.800814 | 1.208007e-48 | -8.615850e-47 |
| Msa0611930 | Msa1385900 | 0.818183 | 2.239266e-52 | -8.615850e-47 |
| Msa0611930 | Msa1395570 | 0.801090 | 1.060676e-48 | -8.615850e-47 |
| Msa0611930 | Msa1435670 | 0.801308 | 9.573062e-49 | -8.615850e-47 |
| Msa0611930 | Msa1449880 | 0.809207 | 2.120761e-50 | -8.615850e-47 |
| Msa0611930 | Msa1464560 | 0.801891 | 7.268208e-49 | -8.615850e-47 |
| Msa0129790 | Msa0611930 | -0.809164 | 2.166403e-50 | -8.615850e-47 |
| Msa0156650 | Msa0611930 | -0.810891 | 9.197454e-51 | -8.615850e-47 |
| Msa0159750 | Msa0611930 | 0.812478 | 4.154084e-51 | -8.615850e-47 |
| Msa0168100 | Msa0611930 | 0.813533 | 2.439928e-51 | -8.615850e-47 |
| Msa0182930 | Msa0611930 | 0.827214 | 1.770756e-54 | -8.615850e-47 |
| Msa0200950 | Msa0611930 | -0.816199 | 6.254218e-52 | -8.615850e-47 |
| Msa0200970 | Msa0611930 | 0.817476 | 3.233638e-52 | -8.615850e-47 |
| Msa0207000 | Msa0611930 | 0.822494 | 2.298328e-53 | -8.615850e-47 |
| Msa0376510 | Msa0611930 | 0.817352 | 3.447488e-52 | -8.615850e-47 |
| Msa0423360 | Msa0611930 | -0.825255 | 5.179431e-54 | -8.615850e-47 |
| Msa0425050 | Msa0611930 | 0.808906 | 2.460378e-50 | -8.615850e-47 |
| Msa0431430 | Msa0611930 | 0.814052 | 1.874657e-51 | -8.615850e-47 |
| Msa0240780 | Msa0611930 | 0.802746 | 4.846571e-49 | -8.615850e-47 |
| Msa0246690 | Msa0611930 | 0.803132 | 4.034055e-49 | -8.615850e-47 |
| Msa0252180 | Msa0611930 | 0.814826 | 1.264015e-51 | -8.615850e-47 |
| Msa0258670 | Msa0611930 | -0.819008 | 1.454889e-52 | -8.615850e-47 |
| Msa0269360 | Msa0611930 | 0.801201 | 1.006901e-48 | -8.615850e-47 |
| Msa0288240 | Msa0611930 | 0.810670 | 1.026995e-50 | -8.615850e-47 |
| Msa0297920 | Msa0611930 | 0.805120 | 1.555971e-49 | -8.615850e-47 |
| Msa0298940 | Msa0611930 | 0.817470 | 3.243212e-52 | -8.615850e-47 |
| Msa0298970 | Msa0611930 | 0.804870 | 1.755110e-49 | -8.615850e-47 |
| Msa0326670 | Msa0611930 | 0.808974 | 2.379574e-50 | -8.615850e-47 |
| Msa0342200 | Msa0611930 | 0.803339 | 3.655246e-49 | -8.615850e-47 |
| Msa0524120 | Msa0611930 | 0.804495 | 2.102329e-49 | -8.615850e-47 |
| Msa0526640 | Msa0611930 | -0.803198 | 3.909095e-49 | -8.615850e-47 |
| Msa0535030 | Msa0611930 | 0.805230 | 1.475840e-49 | -8.615850e-47 |
| Msa0535060 | Msa0611930 | 0.803593 | 3.236847e-49 | -8.615850e-47 |
| Msa0546380 | Msa0611930 | 0.822016 | 2.967677e-53 | -8.615850e-47 |
| Msa0576420 | Msa0611930 | 0.824268 | 8.850768e-54 | -8.615850e-47 |
| Msa0577940 | Msa0611930 | -0.821255 | 4.450322e-53 | -8.615850e-47 |
| Msa0591770 | Msa0611930 | 0.817526 | 3.150325e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611930 | MtrunA17_Chr4g0045531 | 77.586 | 174 | 2 | 1 | 1 | 137 | 288 | 461 | 9.78e-88 | 263 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611930 | AT3G52050.8 | 62.914 | 151 | 41 | 1 | 1 | 136 | 255 | 405 | 7.66e-63 | 197 |
| Msa0611930 | AT3G52050.7 | 62.914 | 151 | 41 | 1 | 1 | 136 | 255 | 405 | 7.66e-63 | 197 |
| Msa0611930 | AT3G52050.4 | 62.914 | 151 | 41 | 1 | 1 | 136 | 261 | 411 | 7.81e-63 | 197 |
| Msa0611930 | AT3G52050.2 | 62.914 | 151 | 41 | 1 | 1 | 136 | 273 | 423 | 9.79e-63 | 197 |
| Msa0611930 | AT3G52050.1 | 62.914 | 151 | 41 | 1 | 1 | 136 | 273 | 423 | 9.79e-63 | 197 |
| Msa0611930 | AT3G52050.6 | 62.914 | 151 | 41 | 1 | 1 | 136 | 278 | 428 | 1.38e-62 | 197 |
| Msa0611930 | AT3G52050.3 | 62.914 | 151 | 41 | 1 | 1 | 136 | 296 | 446 | 1.91e-62 | 197 |
| Msa0611930 | AT3G52050.5 | 69.863 | 73 | 22 | 0 | 1 | 73 | 278 | 350 | 1.79e-31 | 115 |
Find 64 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGATATGATTGCACTTTC+TGG | 0.151527 | 4_2:-60317876 | Msa0611930:CDS |
| GTTCTTTGTAGAATTTATTT+AGG | 0.234277 | 4_2:-60314425 | Msa0611930:three_prime_UTR |
| GTGAAGTTCATTGAGATATC+AGG | 0.263990 | 4_2:-60314635 | Msa0611930:exon |
| TCTACCCAATGCCCATCTTC+TGG | 0.274327 | 4_2:-60314306 | Msa0611930:three_prime_UTR |
| TCTACAAAGAACCATCAATT+TGG | 0.280858 | 4_2:+60314436 | None:intergenic |
| GTGCAATTGATCAGTAAATT+TGG | 0.302237 | 4_2:-60317105 | Msa0611930:intron |
| TTTGTACATACAGGAGTTAA+TGG | 0.317174 | 4_2:-60317147 | Msa0611930:intron |
| TAATACGATCCTCTTTGATT+TGG | 0.320846 | 4_2:+60315722 | None:intergenic |
| AAGCACTGATAGCTGTTAAA+AGG | 0.346617 | 4_2:+60314728 | None:intergenic |
| CACTTAACGTTAATAGAAAC+AGG | 0.351397 | 4_2:+60314179 | None:intergenic |
| GTGCAATCATATCCACAAAC+TGG | 0.353594 | 4_2:+60317883 | None:intergenic |
| TAGAGCAGAGATACTTAAAA+TGG | 0.355097 | 4_2:-60314601 | Msa0611930:three_prime_UTR |
| CTCAATAGGATGGTTTCGTT+TGG | 0.356859 | 4_2:-60317948 | None:intergenic |
| CATACAGGAGTTAATGGAAT+TGG | 0.360524 | 4_2:-60317141 | Msa0611930:intron |
| GAGGACTTTGCAGAGCGATT+TGG | 0.367514 | 4_2:-60317921 | Msa0611930:CDS |
| AAAATGGAGCATGTCAATAC+TGG | 0.370290 | 4_2:-60314585 | Msa0611930:three_prime_UTR |
| GACAGATCTGATAATATTCC+AGG | 0.374957 | 4_2:-60317852 | Msa0611930:intron |
| GTAGTAGGAAAATGACAAAT+TGG | 0.376188 | 4_2:-60314373 | Msa0611930:three_prime_UTR |
| GGAAGTGACAATAGCTCTAC+TGG | 0.389140 | 4_2:-60314352 | Msa0611930:three_prime_UTR |
| ATATCATTTGTGGGAAAAGT+TGG | 0.390864 | 4_2:-60314665 | Msa0611930:CDS |
| CTGTTTCTATTAACGTTAAG+TGG | 0.405791 | 4_2:-60314178 | Msa0611930:three_prime_UTR |
| CTACCCAATGCCCATCTTCT+GGG | 0.406876 | 4_2:-60314305 | Msa0611930:three_prime_UTR |
| TGATATACTCTCCTGATGAT+AGG | 0.414441 | 4_2:+60314682 | None:intergenic |
| TGTGGGAAAAGTTGGATTCA+AGG | 0.423479 | 4_2:-60314657 | Msa0611930:CDS |
| ATGGGCATTGGGTAGAAGTT+AGG | 0.431762 | 4_2:+60314313 | None:intergenic |
| GGTTATGTATGCCAAATTGA+TGG | 0.435393 | 4_2:-60314447 | Msa0611930:three_prime_UTR |
| AGGCACATTGGAGAAGTTGT+TGG | 0.456254 | 4_2:-60315755 | Msa0611930:CDS |
| TTCTGACTGGTCCCAGAAGA+TGG | 0.458951 | 4_2:+60314294 | None:intergenic |
| TCTGAAACCATCCCAGTTTG+TGG | 0.473588 | 4_2:-60317895 | Msa0611930:CDS |
| GACTTTGCAGAGCGATTTGG+AGG | 0.488400 | 4_2:-60317918 | Msa0611930:CDS |
| AATCCCCTCATGTTGTATTG+TGG | 0.492535 | 4_2:+60314560 | None:intergenic |
| TCAGGAGAGTATATCATTTG+TGG | 0.494071 | 4_2:-60314675 | Msa0611930:CDS |
| CAGGAGAGTATATCATTTGT+GGG | 0.501654 | 4_2:-60314674 | Msa0611930:CDS |
| CAAAGAGGATCGTATTAGAA+AGG | 0.504847 | 4_2:-60315716 | Msa0611930:intron |
| TTTCAGCTGATCCTATCATC+AGG | 0.505189 | 4_2:-60314693 | Msa0611930:CDS |
| GGTCCCAGAAGATGGGCATT+GGG | 0.512616 | 4_2:+60314302 | None:intergenic |
| TGAAGTTCATTGAGATATCA+GGG | 0.520672 | 4_2:-60314634 | Msa0611930:three_prime_UTR |
| CGCATGATGCAAATGGTAGT+AGG | 0.527441 | 4_2:-60314388 | Msa0611930:three_prime_UTR |
| TTTAGAACGCATGATGCAAA+TGG | 0.529050 | 4_2:-60314395 | Msa0611930:three_prime_UTR |
| TTTCATCGCAGAACACTCAC+TGG | 0.531428 | 4_2:+60314482 | None:intergenic |
| TGGTCCCAGAAGATGGGCAT+TGG | 0.544451 | 4_2:+60314301 | None:intergenic |
| GTGAATGGTACCATGTAGGA+TGG | 0.550198 | 4_2:+60315272 | None:intergenic |
| GATGGTTTCGTTTGGAGCTG+AGG | 0.553880 | 4_2:-60317940 | Msa0611930:CDS |
| AACGTATACATAACTTCAAG+AGG | 0.554822 | 4_2:-60314273 | Msa0611930:three_prime_UTR |
| GCTATCAGTGCTTATGCAGA+AGG | 0.555616 | 4_2:-60314718 | Msa0611930:CDS |
| TACAGTGAATGGTACCATGT+AGG | 0.557179 | 4_2:+60315268 | None:intergenic |
| TCTGACTGGTCCCAGAAGAT+GGG | 0.561855 | 4_2:+60314295 | None:intergenic |
| TTGTGATCTCCCATCCTACA+TGG | 0.573874 | 4_2:-60315282 | Msa0611930:CDS |
| ACTTATTTGAATAGGCACAT+TGG | 0.579686 | 4_2:-60315767 | Msa0611930:intron |
| CTTTGTAGAATTTATTTAGG+TGG | 0.579937 | 4_2:-60314422 | Msa0611930:three_prime_UTR |
| AGTTATGTATACGTTCTGAC+TGG | 0.581899 | 4_2:+60314281 | None:intergenic |
| TGCAATCATATCCACAAACT+GGG | 0.587318 | 4_2:+60317884 | None:intergenic |
| TATACATAACTTCAAGAGGA+TGG | 0.595600 | 4_2:-60314269 | Msa0611930:three_prime_UTR |
| TGGAACCACAATACAACATG+AGG | 0.600754 | 4_2:-60314565 | Msa0611930:three_prime_UTR |
| TGTTTGTTAATGAGCGAGTG+AGG | 0.617347 | 4_2:+60314155 | None:intergenic |
| ATCATATCCACAAACTGGGA+TGG | 0.619113 | 4_2:+60317888 | None:intergenic |
| ATCTGTTGACCAAATCAAAG+AGG | 0.622060 | 4_2:-60315731 | Msa0611930:CDS |
| GGAACCACAATACAACATGA+GGG | 0.622101 | 4_2:-60314564 | Msa0611930:three_prime_UTR |
| TGAATGGTACCATGTAGGAT+GGG | 0.629221 | 4_2:+60315273 | None:intergenic |
| GTGTACACTGTACAGGACAA+TGG | 0.645776 | 4_2:-60314766 | Msa0611930:intron |
| GAAGTGACAATAGCTCTACT+GGG | 0.648239 | 4_2:-60314351 | Msa0611930:three_prime_UTR |
| TCTCTTGTTTACTAAACCCG+AGG | 0.649424 | 4_2:-60315240 | Msa0611930:intron |
| GAACCACAATACAACATGAG+GGG | 0.699718 | 4_2:-60314563 | Msa0611930:three_prime_UTR |
| ACTTAACGTTAATAGAAACA+GGG | 0.748475 | 4_2:+60314180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAAGTATTTAATACT+TGG | - | chr4_2:60314887-60314906 | Msa0611930:intron | 10.0% |
| !! | TTAATAAGTATTTAATACTT+GGG | - | chr4_2:60314888-60314907 | Msa0611930:intron | 10.0% |
| !!! | AAATTTACATTTATATTTTC+TGG | + | chr4_2:60316019-60316038 | None:intergenic | 10.0% |
| !! | TATAATGCTATATATTGTAT+AGG | + | chr4_2:60314534-60314553 | None:intergenic | 15.0% |
| !!! | TTTTAAATATGATCTATAGT+TGG | + | chr4_2:60316922-60316941 | None:intergenic | 15.0% |
| !!! | TTTGAATTTGAATACTTTTT+TGG | - | chr4_2:60317080-60317099 | Msa0611930:intron | 15.0% |
| !! | AAAAAGATAGAAAGGATAAA+TGG | + | chr4_2:60314486-60314505 | None:intergenic | 20.0% |
| !! | ATTATTGGAAAAAGATAGAA+AGG | + | chr4_2:60314494-60314513 | None:intergenic | 20.0% |
| !!! | ATTAGTCTTGTTGAAATTAT+TGG | + | chr4_2:60314509-60314528 | None:intergenic | 20.0% |
| !! | AATGACATTGTTGAAATTTA+AGG | + | chr4_2:60315885-60315904 | None:intergenic | 20.0% |
| !! | AAATGAGTCAAAAGAAAAAA+TGG | + | chr4_2:60316078-60316097 | None:intergenic | 20.0% |
| !! | TTGAATGACTAACATTATAT+TGG | - | chr4_2:60316145-60316164 | Msa0611930:intron | 20.0% |
| !! | TTCTACATGATTTGATTATT+TGG | + | chr4_2:60316206-60316225 | None:intergenic | 20.0% |
| !! | TATACTGTATATGATATTAG+TGG | - | chr4_2:60316514-60316533 | Msa0611930:intron | 20.0% |
| !! | AAATGTAAATTGCAGTTTAA+AGG | + | chr4_2:60316725-60316744 | None:intergenic | 20.0% |
| !!! | TTTTTAATTAGTTTTTGGCA+TGG | - | chr4_2:60316885-60316904 | Msa0611930:intron | 20.0% |
| !! | GTTCTTTGTAGAATTTATTT+AGG | - | chr4_2:60317638-60317657 | Msa0611930:intron | 20.0% |
| ! | TCATAAAATGATGTTCCAAA+GGG | + | chr4_2:60314252-60314271 | None:intergenic | 25.0% |
| ! | TTCATAAAATGATGTTCCAA+AGG | + | chr4_2:60314253-60314272 | None:intergenic | 25.0% |
| ! | ACATGAGTAAAAATTGAACA+TGG | - | chr4_2:60314273-60314292 | Msa0611930:three_prime_UTR | 25.0% |
| !!! | TGATTACCTATTGATTTCAA+AGG | + | chr4_2:60314354-60314373 | None:intergenic | 25.0% |
| ! | ATCAGATCTGTTAGTATATT+AGG | - | chr4_2:60314370-60314389 | Msa0611930:three_prime_UTR | 25.0% |
| !!! | ATTAGAAGTCTTATTATGTC+AGG | - | chr4_2:60314403-60314422 | Msa0611930:three_prime_UTR | 25.0% |
| !! | AGATTTTACAAATAGGGTAT+TGG | + | chr4_2:60314457-60314476 | None:intergenic | 25.0% |
| !! | CAGAACAGATTTTACAAATA+GGG | + | chr4_2:60314463-60314482 | None:intergenic | 25.0% |
| ! | GTAATGATGATTCATTAGTT+TGG | + | chr4_2:60314794-60314813 | None:intergenic | 25.0% |
| !!! | AATCACTGTTTTGTTTTCAA+GGG | - | chr4_2:60314836-60314855 | Msa0611930:intron | 25.0% |
| ! | TTCACTAGTAAATAATGTTC+TGG | - | chr4_2:60315008-60315027 | Msa0611930:intron | 25.0% |
| ! | TTATTATGCACCCATTATAT+TGG | - | chr4_2:60315194-60315213 | Msa0611930:intron | 25.0% |
| !!! | TTGATAAGAGTCTTTTAAAG+AGG | - | chr4_2:60315553-60315572 | Msa0611930:intron | 25.0% |
| !! | TTGATAAGAGTCTTATAAAG+AGG | - | chr4_2:60315814-60315833 | Msa0611930:intron | 25.0% |
| ! | TCCTTCTGTAATCAAATAAT+TGG | - | chr4_2:60315917-60315936 | Msa0611930:intron | 25.0% |
| ! | CCTTCTGTAATCAAATAATT+GGG | - | chr4_2:60315918-60315937 | Msa0611930:intron | 25.0% |
| ! | GTATAGGTACAATTAATATG+TGG | + | chr4_2:60315988-60316007 | None:intergenic | 25.0% |
| ! | CATATTAATTGTACCTATAC+TGG | - | chr4_2:60315988-60316007 | Msa0611930:intron | 25.0% |
| !!! | CTCATTTTCTTTTTGCTTTT+TGG | - | chr4_2:60316091-60316110 | Msa0611930:intron | 25.0% |
| ! | TAGTTTCCAAAACAATACTA+AGG | + | chr4_2:60316124-60316143 | None:intergenic | 25.0% |
| ! | ATGACTAACATTATATTGGA+TGG | - | chr4_2:60316149-60316168 | Msa0611930:intron | 25.0% |
| ! | AATGGTTAAAATGTTCTCAT+TGG | - | chr4_2:60316402-60316421 | Msa0611930:intron | 25.0% |
| ! | TGCAAAAAAAATCACAATGT+CGG | + | chr4_2:60316566-60316585 | None:intergenic | 25.0% |
| !!! | TTTTTTGCAATTTTCTTTGC+AGG | - | chr4_2:60316577-60316596 | Msa0611930:intron | 25.0% |
| !! | CAAGTGTTTAAAATTATGAC+AGG | - | chr4_2:60316748-60316767 | Msa0611930:intron | 25.0% |
| ! | CTGAATTCATAATTGTACTT+TGG | - | chr4_2:60317166-60317185 | Msa0611930:intron | 25.0% |
| ! | AATAAACTTCCGTAAATGTT+TGG | - | chr4_2:60317218-60317237 | Msa0611930:intron | 25.0% |
| ! | TTACAATGTTAGATGTATTG+TGG | + | chr4_2:60317268-60317287 | None:intergenic | 25.0% |
| !!! | GCGATGAAAACATTTTTTTT+TGG | - | chr4_2:60317595-60317614 | Msa0611930:intron | 25.0% |
| ! | CTTTGTAGAATTTATTTAGG+TGG | - | chr4_2:60317641-60317660 | Msa0611930:intron | 25.0% |
| ! | ACTTAACGTTAATAGAAACA+GGG | + | chr4_2:60317886-60317905 | None:intergenic | 25.0% |
| ! | AGGAAGCTTTTCAAATATGA+GGG | - | chr4_2:60314307-60314326 | Msa0611930:three_prime_UTR | 30.0% |
| ! | GCAGAACAGATTTTACAAAT+AGG | + | chr4_2:60314464-60314483 | None:intergenic | 30.0% |
| GATAGACTAAAGTTTAAGTC+TGG | - | chr4_2:60314611-60314630 | Msa0611930:three_prime_UTR | 30.0% | |
| TTCCTGAAATTTACACGTAA+TGG | - | chr4_2:60314634-60314653 | Msa0611930:three_prime_UTR | 30.0% | |
| TCCTGAAATTTACACGTAAT+GGG | - | chr4_2:60314635-60314654 | Msa0611930:exon | 30.0% | |
| ACAACTAATTGAAGTGTACA+AGG | - | chr4_2:60314674-60314693 | Msa0611930:CDS | 30.0% | |
| CAACTAATTGAAGTGTACAA+GGG | - | chr4_2:60314675-60314694 | Msa0611930:CDS | 30.0% | |
| !!! | GAATCACTGTTTTGTTTTCA+AGG | - | chr4_2:60314835-60314854 | Msa0611930:intron | 30.0% |
| TTTGTACATACAGGAGTTAA+TGG | - | chr4_2:60314916-60314935 | Msa0611930:intron | 30.0% | |
| GTGCAATTGATCAGTAAATT+TGG | - | chr4_2:60314958-60314977 | Msa0611930:intron | 30.0% | |
| ! | ATTGATCAGTAAATTTGGTG+AGG | - | chr4_2:60314963-60314982 | Msa0611930:intron | 30.0% |
| CTTATAACTGAATGTTGATG+TGG | - | chr4_2:60315262-60315281 | Msa0611930:CDS | 30.0% | |
| ! | GTGTATACTCTTTCTGTTTT+TGG | - | chr4_2:60315359-60315378 | Msa0611930:intron | 30.0% |
| ! | TGTATTTTCTGTATGTCTGT+TGG | - | chr4_2:60315409-60315428 | Msa0611930:intron | 30.0% |
| !! | ATAAGAGTCTTTTAAAGAGG+AGG | - | chr4_2:60315556-60315575 | Msa0611930:intron | 30.0% |
| ! | ATAAGAGTCTTATAAAGAGG+AGG | - | chr4_2:60315817-60315836 | Msa0611930:intron | 30.0% |
| CCCAATTATTTGATTACAGA+AGG | + | chr4_2:60315921-60315940 | None:intergenic | 30.0% | |
| ! | GCAGAAATATATGCAGTTTT+TGG | + | chr4_2:60316047-60316066 | None:intergenic | 30.0% |
| AATGTGCCTATTCAAATAAG+TGG | + | chr4_2:60316297-60316316 | None:intergenic | 30.0% | |
| ACTTATTTGAATAGGCACAT+TGG | - | chr4_2:60316296-60316315 | Msa0611930:intron | 30.0% | |
| TAATACGATCCTCTTTGATT+TGG | + | chr4_2:60316344-60316363 | None:intergenic | 30.0% | |
| GGGTAAAGTTATTCATGTAA+TGG | - | chr4_2:60316384-60316403 | Msa0611930:intron | 30.0% | |
| TACAGTATAGTTTCGAACAA+GGG | + | chr4_2:60316503-60316522 | None:intergenic | 30.0% | |
| ATACAGTATAGTTTCGAACA+AGG | + | chr4_2:60316504-60316523 | None:intergenic | 30.0% | |
| ! | AAGAGATCTTTTACAGTGAA+TGG | + | chr4_2:60316809-60316828 | None:intergenic | 30.0% |
| TTGAAAATTCAAACTGCCTT+GGG | + | chr4_2:60316858-60316877 | None:intergenic | 30.0% | |
| ATTGAAAATTCAAACTGCCT+TGG | + | chr4_2:60316859-60316878 | None:intergenic | 30.0% | |
| CAGAAATGCTAGAATATCTT+GGG | + | chr4_2:60317149-60317168 | None:intergenic | 30.0% | |
| TCAGAAATGCTAGAATATCT+TGG | + | chr4_2:60317150-60317169 | None:intergenic | 30.0% | |
| TTAAATTGTGTACACTGTAC+AGG | - | chr4_2:60317290-60317309 | Msa0611930:intron | 30.0% | |
| ATATCATTTGTGGGAAAAGT+TGG | - | chr4_2:60317398-60317417 | Msa0611930:intron | 30.0% | |
| TGAAGTTCATTGAGATATCA+GGG | - | chr4_2:60317429-60317448 | Msa0611930:intron | 30.0% | |
| TAGAGCAGAGATACTTAAAA+TGG | - | chr4_2:60317462-60317481 | Msa0611930:intron | 30.0% | |
| TCTACAAAGAACCATCAATT+TGG | + | chr4_2:60317630-60317649 | None:intergenic | 30.0% | |
| GTAGTAGGAAAATGACAAAT+TGG | - | chr4_2:60317690-60317709 | Msa0611930:intron | 30.0% | |
| AACGTATACATAACTTCAAG+AGG | - | chr4_2:60317790-60317809 | Msa0611930:intron | 30.0% | |
| TATACATAACTTCAAGAGGA+TGG | - | chr4_2:60317794-60317813 | Msa0611930:intron | 30.0% | |
| CACTTAACGTTAATAGAAAC+AGG | + | chr4_2:60317887-60317906 | None:intergenic | 30.0% | |
| !! | CTGTTTCTATTAACGTTAAG+TGG | - | chr4_2:60317885-60317904 | Msa0611930:CDS | 30.0% |
| TGCAATCATATCCACAAACT+GGG | + | chr4_2:60314182-60314201 | None:intergenic | 35.0% | |
| GACAGATCTGATAATATTCC+AGG | - | chr4_2:60314211-60314230 | Msa0611930:three_prime_UTR | 35.0% | |
| !!! | TTATTTTTTCCTCCTCCCTT+TGG | - | chr4_2:60314234-60314253 | Msa0611930:three_prime_UTR | 35.0% |
| TAAAATGATGTTCCAAAGGG+AGG | + | chr4_2:60314249-60314268 | None:intergenic | 35.0% | |
| CTCATATTTGAAAAGCTTCC+TGG | + | chr4_2:60314308-60314327 | None:intergenic | 35.0% | |
| ! | CAGGAAGCTTTTCAAATATG+AGG | - | chr4_2:60314306-60314325 | Msa0611930:three_prime_UTR | 35.0% |
| !! | ACGTCACCTTTGAAATCAAT+AGG | - | chr4_2:60314345-60314364 | Msa0611930:three_prime_UTR | 35.0% |
| ATTGGATCATGTACAAGTAG+AGG | + | chr4_2:60314439-60314458 | None:intergenic | 35.0% | |
| TCCCATTACGTGTAAATTTC+AGG | + | chr4_2:60314639-60314658 | None:intergenic | 35.0% | |
| ! | ATTCCTGTTTTGTGGAATCA+AGG | - | chr4_2:60314752-60314771 | Msa0611930:CDS | 35.0% |
| CCATACTGGACTATATACTT+AGG | + | chr4_2:60314816-60314835 | None:intergenic | 35.0% | |
| CCTAAGTATATAGTCCAGTA+TGG | - | chr4_2:60314813-60314832 | Msa0611930:intron | 35.0% | |
| ACAAAACAGTGATTCCATAC+TGG | + | chr4_2:60314830-60314849 | None:intergenic | 35.0% | |
| !!! | TGGGAGTATTTTGTACATAC+AGG | - | chr4_2:60314907-60314926 | Msa0611930:intron | 35.0% |
| CATACAGGAGTTAATGGAAT+TGG | - | chr4_2:60314922-60314941 | Msa0611930:intron | 35.0% | |
| CATCTAAGGAAACTTGGTAT+GGG | - | chr4_2:60315145-60315164 | Msa0611930:intron | 35.0% | |
| ! | CAGAAAGAGTATACACAGAT+AGG | + | chr4_2:60315355-60315374 | None:intergenic | 35.0% |
| TTGGTTTCTGTGATAGTTAG+AGG | - | chr4_2:60315378-60315397 | Msa0611930:intron | 35.0% | |
| !!! | ACCTTACAAGCTGGTTTTTA+AGG | - | chr4_2:60315587-60315606 | Msa0611930:intron | 35.0% |
| TCCTTAAAAACCAGCTTGTA+AGG | + | chr4_2:60315591-60315610 | None:intergenic | 35.0% | |
| !! | CTGGTTTTTAAGGATGAGTT+AGG | - | chr4_2:60315597-60315616 | Msa0611930:intron | 35.0% |
| TCTGCTACCATGTTGAAATT+CGG | + | chr4_2:60315625-60315644 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr4_2:60315859-60315878 | Msa0611930:intron | 35.0% |
| CTTCAAAAAGAATACCACAG+AGG | + | chr4_2:60315958-60315977 | None:intergenic | 35.0% | |
| ! | TCTCGTCCTTAGTATTGTTT+TGG | - | chr4_2:60316115-60316134 | Msa0611930:intron | 35.0% |
| CATTATATTGGATGGTTGCT+TGG | - | chr4_2:60316157-60316176 | Msa0611930:intron | 35.0% | |
| CTCTCTCCACTTATTTGAAT+AGG | - | chr4_2:60316288-60316307 | Msa0611930:intron | 35.0% | |
| ATCTGTTGACCAAATCAAAG+AGG | - | chr4_2:60316332-60316351 | Msa0611930:intron | 35.0% | |
| CAAAGAGGATCGTATTAGAA+AGG | - | chr4_2:60316347-60316366 | Msa0611930:intron | 35.0% | |
| CTTATGGCACAAAAACTTGA+TGG | + | chr4_2:60316962-60316981 | None:intergenic | 35.0% | |
| ! | TAGATGGTTTTTGCATACTG+TGG | - | chr4_2:60317004-60317023 | Msa0611930:intron | 35.0% |
| !! | AAGCACTGATAGCTGTTAAA+AGG | + | chr4_2:60317338-60317357 | None:intergenic | 35.0% |
| TGATATACTCTCCTGATGAT+AGG | + | chr4_2:60317384-60317403 | None:intergenic | 35.0% | |
| ! | TCAGGAGAGTATATCATTTG+TGG | - | chr4_2:60317388-60317407 | Msa0611930:intron | 35.0% |
| ! | CAGGAGAGTATATCATTTGT+GGG | - | chr4_2:60317389-60317408 | Msa0611930:intron | 35.0% |
| GTGAAGTTCATTGAGATATC+AGG | - | chr4_2:60317428-60317447 | Msa0611930:intron | 35.0% | |
| AAAATGGAGCATGTCAATAC+TGG | - | chr4_2:60317478-60317497 | Msa0611930:intron | 35.0% | |
| GGTTATGTATGCCAAATTGA+TGG | - | chr4_2:60317616-60317635 | Msa0611930:intron | 35.0% | |
| ! | TTTAGAACGCATGATGCAAA+TGG | - | chr4_2:60317668-60317687 | Msa0611930:intron | 35.0% |
| AGTTATGTATACGTTCTGAC+TGG | + | chr4_2:60317785-60317804 | None:intergenic | 35.0% | |
| ATCATATCCACAAACTGGGA+TGG | + | chr4_2:60314178-60314197 | None:intergenic | 40.0% | |
| GTGCAATCATATCCACAAAC+TGG | + | chr4_2:60314183-60314202 | None:intergenic | 40.0% | |
| GTGGATATGATTGCACTTTC+TGG | - | chr4_2:60314187-60314206 | Msa0611930:three_prime_UTR | 40.0% | |
| TTTGAAAAGCTTCCTGGACT+TGG | + | chr4_2:60314302-60314321 | None:intergenic | 40.0% | |
| TGTAGAATGGAATGCATTGG+AGG | + | chr4_2:60314710-60314729 | None:intergenic | 40.0% | |
| CCTTGTAGAATGGAATGCAT+TGG | + | chr4_2:60314713-60314732 | None:intergenic | 40.0% | |
| CCAATGCATTCCATTCTACA+AGG | - | chr4_2:60314710-60314729 | Msa0611930:CDS | 40.0% | |
| GGAAGGAATTCCTTGTAGAA+TGG | + | chr4_2:60314723-60314742 | None:intergenic | 40.0% | |
| TACAAGGAATTCCTTCCTCT+AGG | - | chr4_2:60314726-60314745 | Msa0611930:CDS | 40.0% | |
| ACAAGGAATTCCTTCCTCTA+GGG | - | chr4_2:60314727-60314746 | Msa0611930:CDS | 40.0% | |
| TAGTTTGGCACGAAGAAAGA+TGG | + | chr4_2:60314779-60314798 | None:intergenic | 40.0% | |
| TTGCTCAAAGTGAGCATCTA+AGG | - | chr4_2:60315131-60315150 | Msa0611930:intron | 40.0% | |
| AGTGAGCATCTAAGGAAACT+TGG | - | chr4_2:60315139-60315158 | Msa0611930:intron | 40.0% | |
| GCATCTAAGGAAACTTGGTA+TGG | - | chr4_2:60315144-60315163 | Msa0611930:intron | 40.0% | |
| AGAGAGGTTAGGCTACAATT+TGG | - | chr4_2:60315292-60315311 | Msa0611930:CDS | 40.0% | |
| GGTTAGGCTACAATTTGGTA+AGG | - | chr4_2:60315297-60315316 | Msa0611930:intron | 40.0% | |
| AGAGTATACACAGATAGGCT+AGG | + | chr4_2:60315350-60315369 | None:intergenic | 40.0% | |
| ! | GAGTCTTATCTAACCGATGT+GGG | + | chr4_2:60315533-60315552 | None:intergenic | 40.0% |
| ! | AGAGTCTTATCTAACCGATG+TGG | + | chr4_2:60315534-60315553 | None:intergenic | 40.0% |
| AAAACCAGCTTGTAAGGTGA+GGG | + | chr4_2:60315585-60315604 | None:intergenic | 40.0% | |
| AAAAACCAGCTTGTAAGGTG+AGG | + | chr4_2:60315586-60315605 | None:intergenic | 40.0% | |
| TTAGGCTCCGAATTTCAACA+TGG | - | chr4_2:60315615-60315634 | Msa0611930:intron | 40.0% | |
| ! | GAGTCTTATCTAACCGATGT+GGG | + | chr4_2:60315533-60315552 | None:intergenic | 40.0% |
| ! | AGAGTCTTATCTAACCGATG+TGG | + | chr4_2:60315534-60315553 | None:intergenic | 40.0% |
| CCTTACAAAACCAGCTTGTA+AGG | + | chr4_2:60315852-60315871 | None:intergenic | 40.0% | |
| !!! | CCTTACAAGCTGGTTTTGTA+AGG | - | chr4_2:60315849-60315868 | Msa0611930:intron | 40.0% |
| TTCTTATCGTCATTCCTCTG+TGG | - | chr4_2:60315941-60315960 | Msa0611930:intron | 40.0% | |
| ! | TTTTCTGGACAGTCCAGTAT+AGG | + | chr4_2:60316004-60316023 | None:intergenic | 40.0% |
| AATAACTTTACCCCTGAAGC+GGG | + | chr4_2:60316377-60316396 | None:intergenic | 40.0% | |
| GAATAACTTTACCCCTGAAG+CGG | + | chr4_2:60316378-60316397 | None:intergenic | 40.0% | |
| GTATAGTTTCGAACAAGGGA+AGG | + | chr4_2:60316499-60316518 | None:intergenic | 40.0% | |
| !! | GGCATTGACGTCATAATAGT+GGG | + | chr4_2:60316545-60316564 | None:intergenic | 40.0% |
| ! | CTGCTCAGCATTTTCAGTTA+AGG | + | chr4_2:60316603-60316622 | None:intergenic | 40.0% |
| CTTAACTGAAAATGCTGAGC+AGG | - | chr4_2:60316601-60316620 | Msa0611930:intron | 40.0% | |
| TGAGCAGGCTATATTAAGCA+AGG | - | chr4_2:60316616-60316635 | Msa0611930:intron | 40.0% | |
| GGCTATATTAAGCAAGGAAC+TGG | - | chr4_2:60316622-60316641 | Msa0611930:intron | 40.0% | |
| TGAATGGTACCATGTAGGAT+GGG | + | chr4_2:60316793-60316812 | None:intergenic | 40.0% | |
| TACAGTGAATGGTACCATGT+AGG | + | chr4_2:60316798-60316817 | None:intergenic | 40.0% | |
| ! | TCTCTTGTTTACTAAACCCG+AGG | - | chr4_2:60316823-60316842 | Msa0611930:intron | 40.0% |
| TTTACTAAACCCGAGGTTTG+TGG | - | chr4_2:60316830-60316849 | Msa0611930:intron | 40.0% | |
| ! | AGAGAGCATGGTTATGCTTA+TGG | + | chr4_2:60316978-60316997 | None:intergenic | 40.0% |
| CATCTAGTTATGAGAGAGCA+TGG | + | chr4_2:60316990-60317009 | None:intergenic | 40.0% | |
| CATGCTCTCTCATAACTAGA+TGG | - | chr4_2:60316988-60317007 | Msa0611930:intron | 40.0% | |
| ! | ATGGTTTTTGCATACTGTGG+CGG | - | chr4_2:60317007-60317026 | Msa0611930:intron | 40.0% |
| TGCAGTTGCATACATGTTTG+CGG | - | chr4_2:60317050-60317069 | Msa0611930:intron | 40.0% | |
| AGCGTACTGCCAAACATTTA+CGG | + | chr4_2:60317230-60317249 | None:intergenic | 40.0% | |
| TTTCAGCTGATCCTATCATC+AGG | - | chr4_2:60317370-60317389 | Msa0611930:intron | 40.0% | |
| TGTGGGAAAAGTTGGATTCA+AGG | - | chr4_2:60317406-60317425 | Msa0611930:intron | 40.0% | |
| TGGAACCACAATACAACATG+AGG | - | chr4_2:60317498-60317517 | Msa0611930:intron | 40.0% | |
| GGAACCACAATACAACATGA+GGG | - | chr4_2:60317499-60317518 | Msa0611930:intron | 40.0% | |
| GAACCACAATACAACATGAG+GGG | - | chr4_2:60317500-60317519 | Msa0611930:intron | 40.0% | |
| AATCCCCTCATGTTGTATTG+TGG | + | chr4_2:60317506-60317525 | None:intergenic | 40.0% | |
| !! | GTCGAGCATGTGTTTTTGTT+GGG | - | chr4_2:60317542-60317561 | Msa0611930:intron | 40.0% |
| ! | GAAGTGACAATAGCTCTACT+GGG | - | chr4_2:60317712-60317731 | Msa0611930:intron | 40.0% |
| ! | TGTTTGTTAATGAGCGAGTG+AGG | + | chr4_2:60317911-60317930 | None:intergenic | 40.0% |
| ! | TCTGAAACCATCCCAGTTTG+TGG | - | chr4_2:60314168-60314187 | Msa0611930:three_prime_UTR | 45.0% |
| GGGAGGAGGAAAAAATAACC+TGG | + | chr4_2:60314232-60314251 | None:intergenic | 45.0% | |
| AATGATGTTCCAAAGGGAGG+AGG | + | chr4_2:60314246-60314265 | None:intergenic | 45.0% | |
| TGAACATGGTTACCAAGTCC+AGG | - | chr4_2:60314287-60314306 | Msa0611930:three_prime_UTR | 45.0% | |
| CAAAACAGGAATGACCCTAG+AGG | + | chr4_2:60314744-60314763 | None:intergenic | 45.0% | |
| ! | CTAGGGTCATTCCTGTTTTG+TGG | - | chr4_2:60314744-60314763 | Msa0611930:CDS | 45.0% |
| GGACCTTGATTCCACAAAAC+AGG | + | chr4_2:60314758-60314777 | None:intergenic | 45.0% | |
| CACCCATTATATTGGTCCAC+CGG | - | chr4_2:60315202-60315221 | Msa0611930:intron | 45.0% | |
| ACCCATTATATTGGTCCACC+GGG | - | chr4_2:60315203-60315222 | Msa0611930:intron | 45.0% | |
| CTGAATGTTGATGTGGCAAG+AGG | - | chr4_2:60315269-60315288 | Msa0611930:CDS | 45.0% | |
| CAATTTGGTAAGGTTTGCGC+CGG | - | chr4_2:60315307-60315326 | Msa0611930:intron | 45.0% | |
| AAGCCAACACAAGGCAACTA+GGG | + | chr4_2:60315492-60315511 | None:intergenic | 45.0% | |
| AAAGCCAACACAAGGCAACT+AGG | + | chr4_2:60315493-60315512 | None:intergenic | 45.0% | |
| !! | TTGCCTTGTGTTGGCTTTGA+GGG | - | chr4_2:60315495-60315514 | Msa0611930:intron | 45.0% |
| AAACCAGCTTGTAAGGTGAG+GGG | + | chr4_2:60315584-60315603 | None:intergenic | 45.0% | |
| CCTATCCAGGATCTATCGTT+GGG | - | chr4_2:60315646-60315665 | Msa0611930:intron | 45.0% | |
| AAGCCAACTCAAGGCAACTA+GGG | + | chr4_2:60315753-60315772 | None:intergenic | 45.0% | |
| AAAGCCAACTCAAGGCAACT+AGG | + | chr4_2:60315754-60315773 | None:intergenic | 45.0% | |
| !! | TTGCCTTGAGTTGGCTTTGA+GGG | - | chr4_2:60315756-60315775 | Msa0611930:CDS | 45.0% |
| CAAAACCAGCTTGTAAGGTG+AGG | + | chr4_2:60315847-60315866 | None:intergenic | 45.0% | |
| AGGCACATTGGAGAAGTTGT+TGG | - | chr4_2:60316308-60316327 | Msa0611930:intron | 45.0% | |
| !! | TAGAAAGGTATTCCCGCTTC+AGG | - | chr4_2:60316362-60316381 | Msa0611930:intron | 45.0% |
| !! | AGAAAGGTATTCCCGCTTCA+GGG | - | chr4_2:60316363-60316382 | Msa0611930:intron | 45.0% |
| !! | CGGCATTGACGTCATAATAG+TGG | + | chr4_2:60316546-60316565 | None:intergenic | 45.0% |
| TTGTGATCTCCCATCCTACA+TGG | - | chr4_2:60316781-60316800 | Msa0611930:intron | 45.0% | |
| GTGAATGGTACCATGTAGGA+TGG | + | chr4_2:60316794-60316813 | None:intergenic | 45.0% | |
| GCAGTTGCATACATGTTTGC+GGG | - | chr4_2:60317051-60317070 | Msa0611930:intron | 45.0% | |
| GTGTACACTGTACAGGACAA+TGG | - | chr4_2:60317297-60317316 | Msa0611930:intron | 45.0% | |
| GCTATCAGTGCTTATGCAGA+AGG | - | chr4_2:60317345-60317364 | Msa0611930:intron | 45.0% | |
| !! | CGTCGAGCATGTGTTTTTGT+TGG | - | chr4_2:60317541-60317560 | Msa0611930:intron | 45.0% |
| TTTCATCGCAGAACACTCAC+TGG | + | chr4_2:60317584-60317603 | None:intergenic | 45.0% | |
| CGCATGATGCAAATGGTAGT+AGG | - | chr4_2:60317675-60317694 | Msa0611930:intron | 45.0% | |
| ! | GGAAGTGACAATAGCTCTAC+TGG | - | chr4_2:60317711-60317730 | Msa0611930:intron | 45.0% |
| !! | ATGGGCATTGGGTAGAAGTT+AGG | + | chr4_2:60317753-60317772 | None:intergenic | 45.0% |
| !!! | TATATTTTTTAATTAGTTTT+TGG | - | chr4_2:60316880-60316899 | Msa0611930:intron | 5.0% |
| ! | GATGGTTTCGTTTGGAGCTG+AGG | - | chr4_2:60314123-60314142 | Msa0611930:three_prime_UTR | 50.0% |
| GAGGACTTTGCAGAGCGATT+TGG | - | chr4_2:60314142-60314161 | Msa0611930:three_prime_UTR | 50.0% | |
| ! | GACTTTGCAGAGCGATTTGG+AGG | - | chr4_2:60314145-60314164 | Msa0611930:three_prime_UTR | 50.0% |
| ACAGGAATGACCCTAGAGGA+AGG | + | chr4_2:60314740-60314759 | None:intergenic | 50.0% | |
| CCCCGGTGGACCAATATAAT+GGG | + | chr4_2:60315207-60315226 | None:intergenic | 50.0% | |
| CCCATTATATTGGTCCACCG+GGG | - | chr4_2:60315204-60315223 | Msa0611930:intron | 50.0% | |
| CCATTATATTGGTCCACCGG+GGG | - | chr4_2:60315205-60315224 | Msa0611930:intron | 50.0% | |
| TTCCCTGCTAAACATTCCCC+CGG | + | chr4_2:60315224-60315243 | None:intergenic | 50.0% | |
| TTGATGTGGCAAGAGGAGAG+AGG | - | chr4_2:60315276-60315295 | Msa0611930:CDS | 50.0% | |
| GGACTTCAGTCTACAACCTC+CGG | + | chr4_2:60315329-60315348 | None:intergenic | 50.0% | |
| GGGCAGATCGCAATAAAGGT+GGG | + | chr4_2:60315471-60315490 | None:intergenic | 50.0% | |
| CTAGGGGCAGATCGCAATAA+AGG | + | chr4_2:60315475-60315494 | None:intergenic | 50.0% | |
| AGCCAACACAAGGCAACTAG+GGG | + | chr4_2:60315491-60315510 | None:intergenic | 50.0% | |
| !! | GTTGCCTTGTGTTGGCTTTG+AGG | - | chr4_2:60315494-60315513 | Msa0611930:intron | 50.0% |
| !! | TGCCTTGTGTTGGCTTTGAG+GGG | - | chr4_2:60315496-60315515 | Msa0611930:intron | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | - | chr4_2:60315517-60315536 | Msa0611930:intron | 50.0% |
| GCCTATCCAGGATCTATCGT+TGG | - | chr4_2:60315645-60315664 | Msa0611930:intron | 50.0% | |
| CCCAACGATAGATCCTGGAT+AGG | + | chr4_2:60315649-60315668 | None:intergenic | 50.0% | |
| GGAATCCCAACGATAGATCC+TGG | + | chr4_2:60315654-60315673 | None:intergenic | 50.0% | |
| CTAGGGGCAGATCGCAATAA+AGG | + | chr4_2:60315475-60315494 | None:intergenic | 50.0% | |
| AGCCAACTCAAGGCAACTAG+GGG | + | chr4_2:60315752-60315771 | None:intergenic | 50.0% | |
| !! | GTTGCCTTGAGTTGGCTTTG+AGG | - | chr4_2:60315755-60315774 | Msa0611930:CDS | 50.0% |
| !! | TGCCTTGAGTTGGCTTTGAG+GGG | - | chr4_2:60315757-60315776 | Msa0611930:intron | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | - | chr4_2:60315517-60315536 | Msa0611930:intron | 50.0% |
| !! | GAAAGGTATTCCCGCTTCAG+GGG | - | chr4_2:60316364-60316383 | Msa0611930:intron | 50.0% |
| TCTACCCAATGCCCATCTTC+TGG | - | chr4_2:60317757-60317776 | Msa0611930:intron | 50.0% | |
| CTACCCAATGCCCATCTTCT+GGG | - | chr4_2:60317758-60317777 | Msa0611930:intron | 50.0% | |
| ! | TCTGACTGGTCCCAGAAGAT+GGG | + | chr4_2:60317771-60317790 | None:intergenic | 50.0% |
| ! | TTCTGACTGGTCCCAGAAGA+TGG | + | chr4_2:60317772-60317791 | None:intergenic | 50.0% |
| CCCCCGGTGGACCAATATAA+TGG | + | chr4_2:60315208-60315227 | None:intergenic | 55.0% | |
| CACCGGGGGAATGTTTAGCA+GGG | - | chr4_2:60315219-60315238 | Msa0611930:intron | 55.0% | |
| GTGGCAAGAGGAGAGAGGTT+AGG | - | chr4_2:60315281-60315300 | Msa0611930:CDS | 55.0% | |
| TTTGGTAAGGTTTGCGCCGG+AGG | - | chr4_2:60315310-60315329 | Msa0611930:intron | 55.0% | |
| GGGGCAGATCGCAATAAAGG+TGG | + | chr4_2:60315472-60315491 | None:intergenic | 55.0% | |
| TGCCCCTAGTTGCCTTGTGT+TGG | - | chr4_2:60315486-60315505 | Msa0611930:intron | 55.0% | |
| !! | GCCTTGTGTTGGCTTTGAGG+GGG | - | chr4_2:60315497-60315516 | Msa0611930:intron | 55.0% |
| ACCCCCTCAAAGCCAACACA+AGG | + | chr4_2:60315501-60315520 | None:intergenic | 55.0% | |
| !! | TTGTGTTGGCTTTGAGGGGG+TGG | - | chr4_2:60315500-60315519 | Msa0611930:intron | 55.0% |
| CATGGTAGCAGAGCCTATCC+AGG | - | chr4_2:60315633-60315652 | Msa0611930:intron | 55.0% | |
| AATGGGCATGAAGCGTGGCA+AGG | + | chr4_2:60315678-60315697 | None:intergenic | 55.0% | |
| TTGCCACGCTTCATGCCCAT+TGG | - | chr4_2:60315677-60315696 | Msa0611930:intron | 55.0% | |
| TGCCACGCTTCATGCCCATT+GGG | - | chr4_2:60315678-60315697 | Msa0611930:intron | 55.0% | |
| TGCCCCTAGTTGCCTTGAGT+TGG | - | chr4_2:60315747-60315766 | Msa0611930:CDS | 55.0% | |
| !! | GCCTTGAGTTGGCTTTGAGG+GGG | - | chr4_2:60315758-60315777 | Msa0611930:intron | 55.0% |
| ACCCCCTCAAAGCCAACTCA+AGG | + | chr4_2:60315762-60315781 | None:intergenic | 55.0% | |
| !! | TTGAGTTGGCTTTGAGGGGG+TGG | - | chr4_2:60315761-60315780 | Msa0611930:intron | 55.0% |
| GCACTCCTCACCTTACAAGC+TGG | - | chr4_2:60315839-60315858 | Msa0611930:intron | 55.0% | |
| GGTCCCAGAAGATGGGCATT+GGG | + | chr4_2:60317764-60317783 | None:intergenic | 55.0% | |
| TGGTCCCAGAAGATGGGCAT+TGG | + | chr4_2:60317765-60317784 | None:intergenic | 55.0% | |
| CCTGCTAAACATTCCCCCGG+TGG | + | chr4_2:60315221-60315240 | None:intergenic | 60.0% | |
| CCACCGGGGGAATGTTTAGC+AGG | - | chr4_2:60315218-60315237 | Msa0611930:intron | 60.0% | |
| GTTGGAAATCCCGCCTCGAG+CGG | - | chr4_2:60315427-60315446 | Msa0611930:intron | 60.0% | |
| TTGGAAATCCCGCCTCGAGC+GGG | - | chr4_2:60315428-60315447 | Msa0611930:intron | 60.0% | |
| GCACCCCTCACCTTACAAGC+TGG | - | chr4_2:60315578-60315597 | Msa0611930:intron | 60.0% | |
| GACCCAATGGGCATGAAGCG+TGG | + | chr4_2:60315683-60315702 | None:intergenic | 60.0% | |
| CCCTCATGCTCGGACCCAAT+GGG | + | chr4_2:60315695-60315714 | None:intergenic | 60.0% | |
| CCCATTGGGTCCGAGCATGA+GGG | - | chr4_2:60315692-60315711 | Msa0611930:intron | 60.0% | |
| CCATTGGGTCCGAGCATGAG+GGG | - | chr4_2:60315693-60315712 | Msa0611930:intron | 60.0% | |
| CATTGGGTCCGAGCATGAGG+GGG | - | chr4_2:60315694-60315713 | Msa0611930:intron | 60.0% | |
| ATTGGGTCCGAGCATGAGGG+GGG | - | chr4_2:60315695-60315714 | Msa0611930:intron | 60.0% | |
| CCTTGGGAGCCACAAACCTC+GGG | + | chr4_2:60316842-60316861 | None:intergenic | 60.0% | |
| GCCTTGGGAGCCACAAACCT+CGG | + | chr4_2:60316843-60316862 | None:intergenic | 60.0% | |
| AAATCCCGCCTCGAGCGGGA+GGG | - | chr4_2:60315432-60315451 | Msa0611930:intron | 65.0% | |
| GGGCATGAAGCGTGGCAAGG+CGG | + | chr4_2:60315675-60315694 | None:intergenic | 65.0% | |
| GCCCATTGGGTCCGAGCATG+AGG | - | chr4_2:60315691-60315710 | Msa0611930:intron | 65.0% | |
| CCCCTCATGCTCGGACCCAA+TGG | + | chr4_2:60315696-60315715 | None:intergenic | 65.0% | |
| TTGGGTCCGAGCATGAGGGG+GGG | - | chr4_2:60315696-60315715 | Msa0611930:intron | 65.0% | |
| CCAACACCCCCCCTCATGCT+CGG | + | chr4_2:60315705-60315724 | None:intergenic | 65.0% | |
| CCCGAGGTTTGTGGCTCCCA+AGG | - | chr4_2:60316839-60316858 | Msa0611930:intron | 65.0% | |
| GAAATCCCGCCTCGAGCGGG+AGG | - | chr4_2:60315431-60315450 | Msa0611930:intron | 70.0% | |
| AATCCCGCCTCGAGCGGGAG+GGG | - | chr4_2:60315433-60315452 | Msa0611930:intron | 70.0% | |
| ! | CCGAGCATGAGGGGGGGTGT+TGG | - | chr4_2:60315702-60315721 | Msa0611930:intron | 70.0% |
| ATCCCGCCTCGAGCGGGAGG+GGG | - | chr4_2:60315434-60315453 | Msa0611930:intron | 75.0% | |
| CAACACCCCCCTCCCGCTCG+AGG | + | chr4_2:60315443-60315462 | None:intergenic | 75.0% | |
| ! | CTCGAGCGGGAGGGGGGTGT+TGG | - | chr4_2:60315441-60315460 | Msa0611930:intron | 75.0% |
| ! | TCCCGCCTCGAGCGGGAGGG+GGG | - | chr4_2:60315435-60315454 | Msa0611930:intron | 80.0% |
| ! | ACCCCCCTCCCGCTCGAGGC+GGG | + | chr4_2:60315439-60315458 | None:intergenic | 80.0% |
| ! | CACCCCCCTCCCGCTCGAGG+CGG | + | chr4_2:60315440-60315459 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60314119 | 60317966 | 60314119 | ID=Msa0611930;Name=Msa0611930 |
| chr4_2 | mRNA | 60314119 | 60317966 | 60314119 | ID=Msa0611930-mRNA-1;Parent=Msa0611930;Name=Msa0611930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=5|0.75|1|1|1|1|5|535|137 |
| chr4_2 | exon | 60314119 | 60314773 | 60314119 | ID=Msa0611930-mRNA-1:exon:16224;Parent=Msa0611930-mRNA-1 |
| chr4_2 | exon | 60315241 | 60315315 | 60315241 | ID=Msa0611930-mRNA-1:exon:16223;Parent=Msa0611930-mRNA-1 |
| chr4_2 | exon | 60315717 | 60315775 | 60315717 | ID=Msa0611930-mRNA-1:exon:16222;Parent=Msa0611930-mRNA-1 |
| chr4_2 | exon | 60317106 | 60317156 | 60317106 | ID=Msa0611930-mRNA-1:exon:16221;Parent=Msa0611930-mRNA-1 |
| chr4_2 | exon | 60317853 | 60317966 | 60317853 | ID=Msa0611930-mRNA-1:exon:16220;Parent=Msa0611930-mRNA-1 |
| chr4_2 | five_prime_UTR | 60317962 | 60317966 | 60317962 | ID=Msa0611930-mRNA-1:five_prime_utr;Parent=Msa0611930-mRNA-1 |
| chr4_2 | CDS | 60317853 | 60317961 | 60317853 | ID=Msa0611930-mRNA-1:cds;Parent=Msa0611930-mRNA-1 |
| chr4_2 | CDS | 60317106 | 60317156 | 60317106 | ID=Msa0611930-mRNA-1:cds;Parent=Msa0611930-mRNA-1 |
| chr4_2 | CDS | 60315717 | 60315775 | 60315717 | ID=Msa0611930-mRNA-1:cds;Parent=Msa0611930-mRNA-1 |
| chr4_2 | CDS | 60315241 | 60315315 | 60315241 | ID=Msa0611930-mRNA-1:cds;Parent=Msa0611930-mRNA-1 |
| chr4_2 | CDS | 60314654 | 60314773 | 60314654 | ID=Msa0611930-mRNA-1:cds;Parent=Msa0611930-mRNA-1 |
| chr4_2 | three_prime_UTR | 60314119 | 60314653 | 60314119 | ID=Msa0611930-mRNA-1:three_prime_utr;Parent=Msa0611930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
