Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663440 | XP_013454514.3 | 83.978 | 543 | 27 | 2 | 1 | 491 | 1 | 535 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663440 | sp|A8MRD9|PDS5D_ARATH | 49.407 | 253 | 128 | 0 | 27 | 279 | 26 | 278 | 7.21e-76 | 267 |
| Msa0663440 | sp|A8MRD9|PDS5D_ARATH | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 3.32e-14 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663440 | A0A396HYD0 | 83.978 | 543 | 27 | 2 | 1 | 491 | 1 | 535 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0663440 | 0.815986 | 6.979361e-52 | -8.615850e-47 |
| Msa0015390 | Msa0663440 | 0.817456 | 3.267590e-52 | -8.615850e-47 |
| Msa0017510 | Msa0663440 | 0.829654 | 4.562088e-55 | -8.615850e-47 |
| Msa0028640 | Msa0663440 | 0.804129 | 2.505167e-49 | -8.615850e-47 |
| Msa0116770 | Msa0663440 | 0.811245 | 7.709188e-51 | -8.615850e-47 |
| Msa0626410 | Msa0663440 | 0.809071 | 2.268418e-50 | -8.615850e-47 |
| Msa0657970 | Msa0663440 | 0.806543 | 7.818730e-50 | -8.615850e-47 |
| Msa0663380 | Msa0663440 | 0.939610 | 9.516759e-100 | -8.615850e-47 |
| Msa0663440 | Msa0701900 | 0.811698 | 6.145545e-51 | -8.615850e-47 |
| Msa0663440 | Msa0703050 | 0.806611 | 7.564521e-50 | -8.615850e-47 |
| Msa0663440 | Msa0735170 | 0.838583 | 2.638944e-57 | -8.615850e-47 |
| Msa0663440 | Msa0745790 | 0.800506 | 1.396142e-48 | -8.615850e-47 |
| Msa0663440 | Msa0766630 | 0.810837 | 9.449072e-51 | -8.615850e-47 |
| Msa0663440 | Msa0838580 | 0.813754 | 2.180423e-51 | -8.615850e-47 |
| Msa0663440 | Msa0844490 | 0.805570 | 1.252386e-49 | -8.615850e-47 |
| Msa0663440 | Msa0880140 | 0.827311 | 1.677788e-54 | -8.615850e-47 |
| Msa0663440 | Msa0884470 | 0.815918 | 7.225110e-52 | -8.615850e-47 |
| Msa0663440 | Msa0897330 | 0.801168 | 1.022575e-48 | -8.615850e-47 |
| Msa0663440 | Msa0907070 | 0.804930 | 1.704914e-49 | -8.615850e-47 |
| Msa0663440 | Msa0969520 | 0.822673 | 2.088583e-53 | -8.615850e-47 |
| Msa0663440 | Msa0974080 | 0.800444 | 1.437211e-48 | -8.615850e-47 |
| Msa0663440 | Msa1000880 | 0.816076 | 6.664170e-52 | -8.615850e-47 |
| Msa0663440 | Msa1014540 | 0.811894 | 5.570950e-51 | -8.615850e-47 |
| Msa0663440 | Msa1030970 | 0.804796 | 1.818688e-49 | -8.615850e-47 |
| Msa0663440 | Msa1075220 | -0.833747 | 4.466037e-56 | -8.615850e-47 |
| Msa0663440 | Msa1075540 | 0.817341 | 3.467512e-52 | -8.615850e-47 |
| Msa0663440 | Msa1082500 | 0.803219 | 3.870375e-49 | -8.615850e-47 |
| Msa0663440 | Msa1113170 | 0.808164 | 3.542963e-50 | -8.615850e-47 |
| Msa0663440 | Msa1116130 | -0.813490 | 2.493437e-51 | -8.615850e-47 |
| Msa0663440 | Msa1121490 | 0.804814 | 1.802851e-49 | -8.615850e-47 |
| Msa0663440 | Msa1137570 | 0.817013 | 4.110115e-52 | -8.615850e-47 |
| Msa0663440 | Msa1139000 | -0.807842 | 4.149499e-50 | -8.615850e-47 |
| Msa0663440 | Msa1147740 | 0.800885 | 1.168407e-48 | -8.615850e-47 |
| Msa0663440 | Msa1147900 | 0.803868 | 2.837973e-49 | -8.615850e-47 |
| Msa0663440 | Msa1151910 | 0.812477 | 4.157534e-51 | -8.615850e-47 |
| Msa0663440 | Msa1162550 | -0.840658 | 7.615859e-58 | -8.615850e-47 |
| Msa0663440 | Msa1178180 | 0.823696 | 1.205563e-53 | -8.615850e-47 |
| Msa0663440 | Msa1283860 | 0.804746 | 1.863101e-49 | -8.615850e-47 |
| Msa0663440 | Msa1284680 | 0.824117 | 9.603403e-54 | -8.615850e-47 |
| Msa0663440 | Msa1302830 | 0.818310 | 2.095806e-52 | -8.615850e-47 |
| Msa0663440 | Msa1308380 | 0.802502 | 5.441013e-49 | -8.615850e-47 |
| Msa0663440 | Msa1309030 | 0.812423 | 4.270920e-51 | -8.615850e-47 |
| Msa0663440 | Msa1313150 | 0.827555 | 1.466264e-54 | -8.615850e-47 |
| Msa0663440 | Msa1353470 | 0.817075 | 3.980221e-52 | -8.615850e-47 |
| Msa0663440 | Msa1372760 | 0.804952 | 1.687657e-49 | -8.615850e-47 |
| Msa0663440 | Msa1409870 | 0.833435 | 5.342326e-56 | -8.615850e-47 |
| Msa0663440 | Msa1423880 | 0.834667 | 2.624563e-56 | -8.615850e-47 |
| Msa0141620 | Msa0663440 | 0.823179 | 1.592324e-53 | -8.615850e-47 |
| Msa0157290 | Msa0663440 | 0.829664 | 4.535107e-55 | -8.615850e-47 |
| Msa0165210 | Msa0663440 | 0.820765 | 5.768688e-53 | -8.615850e-47 |
| Msa0171300 | Msa0663440 | 0.803443 | 3.477316e-49 | -8.615850e-47 |
| Msa0212990 | Msa0663440 | 0.813436 | 2.562803e-51 | -8.615850e-47 |
| Msa0215320 | Msa0663440 | -0.820179 | 7.863109e-53 | -8.615850e-47 |
| Msa0366240 | Msa0663440 | 0.814325 | 1.631677e-51 | -8.615850e-47 |
| Msa0388960 | Msa0663440 | 0.837148 | 6.167617e-57 | -8.615850e-47 |
| Msa0395790 | Msa0663440 | 0.812382 | 4.360268e-51 | -8.615850e-47 |
| Msa0397750 | Msa0663440 | 0.801401 | 9.160865e-49 | -8.615850e-47 |
| Msa0402290 | Msa0663440 | 0.810157 | 1.324977e-50 | -8.615850e-47 |
| Msa0416650 | Msa0663440 | 0.806075 | 9.810428e-50 | -8.615850e-47 |
| Msa0426640 | Msa0663440 | 0.805132 | 1.547310e-49 | -8.615850e-47 |
| Msa0469160 | Msa0663440 | 0.821324 | 4.288781e-53 | -8.615850e-47 |
| Msa0480980 | Msa0663440 | 0.809598 | 1.748634e-50 | -8.615850e-47 |
| Msa0244860 | Msa0663440 | 0.816485 | 5.396487e-52 | -8.615850e-47 |
| Msa0245940 | Msa0663440 | 0.801939 | 7.105292e-49 | -8.615850e-47 |
| Msa0283450 | Msa0663440 | 0.836237 | 1.052699e-56 | -8.615850e-47 |
| Msa0283520 | Msa0663440 | 0.808339 | 3.251024e-50 | -8.615850e-47 |
| Msa0321860 | Msa0663440 | 0.811038 | 8.547434e-51 | -8.615850e-47 |
| Msa0330340 | Msa0663440 | 0.813431 | 2.568532e-51 | -8.615850e-47 |
| Msa0332000 | Msa0663440 | 0.819856 | 9.321687e-53 | -8.615850e-47 |
| Msa0350990 | Msa0663440 | 0.808553 | 2.927264e-50 | -8.615850e-47 |
| Msa0351030 | Msa0663440 | 0.804023 | 2.636125e-49 | -8.615850e-47 |
| Msa0355220 | Msa0663440 | 0.806137 | 9.517046e-50 | -8.615850e-47 |
| Msa0488560 | Msa0663440 | 0.803044 | 4.205677e-49 | -8.615850e-47 |
| Msa0514880 | Msa0663440 | 0.804617 | 1.981782e-49 | -8.615850e-47 |
| Msa0554050 | Msa0663440 | 0.806047 | 9.944416e-50 | -8.615850e-47 |
| Msa0574890 | Msa0663440 | 0.800695 | 1.277229e-48 | -8.615850e-47 |
| Msa0576880 | Msa0663440 | 0.800989 | 1.112622e-48 | -8.615850e-47 |
| Msa0585300 | Msa0663440 | 0.845658 | 3.540027e-59 | -8.615850e-47 |
| Msa0593650 | Msa0663440 | 0.800863 | 1.180221e-48 | -8.615850e-47 |
| Msa0601750 | Msa0663440 | 0.813068 | 3.085405e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663440 | MtrunA17_Chr4g0001301 | 83.978 | 543 | 27 | 2 | 1 | 491 | 1 | 535 | 0.0 | 867 |
| Msa0663440 | MtrunA17_Chr1g0149971 | 48.361 | 244 | 126 | 0 | 27 | 270 | 24 | 267 | 3.92e-73 | 258 |
| Msa0663440 | MtrunA17_Chr1g0149971 | 50.000 | 90 | 35 | 3 | 736 | 825 | 635 | 714 | 7.51e-17 | 85.5 |
| Msa0663440 | MtrunA17_Chr3g0137011 | 44.531 | 256 | 141 | 1 | 6 | 261 | 4 | 258 | 2.37e-68 | 242 |
| Msa0663440 | MtrunA17_Chr3g0137011 | 33.333 | 141 | 69 | 4 | 708 | 825 | 452 | 590 | 4.03e-13 | 73.6 |
| Msa0663440 | MtrunA17_Chr4g0013631 | 72.263 | 137 | 32 | 1 | 1 | 131 | 1 | 137 | 7.64e-56 | 189 |
| Msa0663440 | MtrunA17_Chr4g0013641 | 53.889 | 180 | 80 | 2 | 298 | 477 | 33 | 209 | 9.47e-50 | 176 |
| Msa0663440 | MtrunA17_Chr4g0013641 | 55.000 | 60 | 27 | 0 | 649 | 708 | 198 | 257 | 7.63e-12 | 66.6 |
| Msa0663440 | MtrunA17_Chr4g0076411 | 38.272 | 243 | 146 | 1 | 11 | 249 | 14 | 256 | 2.58e-43 | 171 |
| Msa0663440 | MtrunA17_Chr4g0076411 | 43.529 | 85 | 38 | 3 | 736 | 819 | 1353 | 1428 | 7.35e-13 | 72.8 |
| Msa0663440 | MtrunA17_Chr2g0290621 | 35.743 | 249 | 152 | 3 | 14 | 255 | 9 | 256 | 2.90e-42 | 167 |
| Msa0663440 | MtrunA17_Chr2g0290621 | 42.727 | 110 | 51 | 3 | 711 | 819 | 1322 | 1420 | 2.08e-15 | 81.3 |
| Msa0663440 | MtrunA17_Chr1g0164141 | 32.328 | 232 | 123 | 3 | 6 | 226 | 23 | 231 | 4.30e-29 | 125 |
| Msa0663440 | MtrunA17_Chr2g0308141 | 91.892 | 37 | 3 | 0 | 1 | 37 | 1 | 37 | 3.73e-14 | 68.9 |
| Msa0663440 | MtrunA17_Chr7g0269931 | 50.980 | 51 | 25 | 0 | 766 | 816 | 90 | 140 | 3.94e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663440 | AT1G80810.5 | 49.407 | 253 | 128 | 0 | 27 | 279 | 26 | 278 | 9.66e-78 | 266 |
| Msa0663440 | AT1G80810.5 | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 2.65e-15 | 80.9 |
| Msa0663440 | AT1G80810.3 | 49.407 | 253 | 128 | 0 | 27 | 279 | 26 | 278 | 7.33e-77 | 267 |
| Msa0663440 | AT1G80810.3 | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 3.37e-15 | 80.5 |
| Msa0663440 | AT1G15940.1 | 38.701 | 385 | 192 | 5 | 28 | 412 | 29 | 369 | 8.38e-73 | 258 |
| Msa0663440 | AT1G15940.1 | 43.023 | 86 | 42 | 2 | 761 | 846 | 566 | 644 | 2.04e-14 | 78.2 |
| Msa0663440 | AT4G31880.2 | 49.600 | 250 | 124 | 2 | 27 | 276 | 24 | 271 | 9.29e-73 | 256 |
| Msa0663440 | AT4G31880.2 | 58.491 | 53 | 22 | 0 | 763 | 815 | 604 | 656 | 9.03e-16 | 82.4 |
| Msa0663440 | AT4G31880.1 | 49.600 | 250 | 124 | 2 | 27 | 276 | 24 | 271 | 9.42e-73 | 256 |
| Msa0663440 | AT4G31880.1 | 58.491 | 53 | 22 | 0 | 763 | 815 | 605 | 657 | 9.19e-16 | 82.4 |
| Msa0663440 | AT1G80810.1 | 49.115 | 226 | 115 | 0 | 54 | 279 | 1 | 226 | 2.76e-70 | 248 |
| Msa0663440 | AT1G80810.1 | 46.875 | 64 | 34 | 0 | 762 | 825 | 501 | 564 | 1.58e-14 | 78.6 |
| Msa0663440 | AT1G80810.4 | 49.115 | 226 | 115 | 0 | 54 | 279 | 1 | 226 | 2.91e-70 | 248 |
| Msa0663440 | AT1G80810.4 | 42.105 | 76 | 44 | 0 | 750 | 825 | 490 | 565 | 3.14e-15 | 80.5 |
| Msa0663440 | AT1G80810.2 | 49.115 | 226 | 115 | 0 | 54 | 279 | 1 | 226 | 2.91e-70 | 248 |
| Msa0663440 | AT1G80810.2 | 42.105 | 76 | 44 | 0 | 750 | 825 | 490 | 565 | 3.14e-15 | 80.5 |
| Msa0663440 | AT5G47690.2 | 40.171 | 234 | 133 | 3 | 14 | 242 | 9 | 240 | 1.49e-36 | 149 |
| Msa0663440 | AT5G47690.2 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1321 | 1423 | 5.75e-17 | 86.7 |
| Msa0663440 | AT5G47690.1 | 40.171 | 234 | 133 | 3 | 14 | 242 | 9 | 240 | 1.52e-36 | 149 |
| Msa0663440 | AT5G47690.1 | 41.905 | 105 | 57 | 2 | 718 | 821 | 1321 | 1422 | 2.08e-16 | 85.1 |
| Msa0663440 | AT5G47690.3 | 40.171 | 234 | 133 | 3 | 14 | 242 | 9 | 240 | 1.60e-36 | 149 |
| Msa0663440 | AT5G47690.3 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1321 | 1423 | 6.05e-17 | 86.7 |
| Msa0663440 | AT1G77600.1 | 30.653 | 199 | 114 | 3 | 63 | 239 | 65 | 261 | 1.81e-21 | 101 |
| Msa0663440 | AT1G77600.2 | 30.653 | 199 | 114 | 3 | 63 | 239 | 65 | 261 | 1.87e-21 | 101 |
| Msa0663440 | AT1G77600.3 | 30.653 | 199 | 114 | 3 | 63 | 239 | 65 | 261 | 2.98e-21 | 100 |
| Msa0663440 | AT5G47690.4 | 37.762 | 143 | 85 | 1 | 104 | 242 | 1 | 143 | 7.62e-18 | 89.7 |
| Msa0663440 | AT5G47690.4 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1224 | 1326 | 6.63e-17 | 86.7 |
| Msa0663440 | AT5G10950.1 | 50.000 | 56 | 28 | 0 | 762 | 817 | 33 | 88 | 3.50e-14 | 75.9 |
Find 160 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGCGTCTTATCCTTTC+TGG | 0.144733 | 4_4:-2308530 | None:intergenic |
| ACTTTGTCTCATCCATAATT+TGG | 0.161292 | 4_4:-2307913 | None:intergenic |
| TTCAATATTGACGCAGAATT+AGG | 0.164323 | 4_4:-2308865 | None:intergenic |
| CTTTCTTACACTATCTAATA+AGG | 0.186482 | 4_4:-2307206 | None:intergenic |
| GAGGAATGTGTCAAACTTTA+TGG | 0.198692 | 4_4:+2310440 | Msa0663440:three_prime_UTR |
| GGAGCTTCACCGACAGTTTC+AGG | 0.207919 | 4_4:-2308556 | None:intergenic |
| AGAGCTTCACCGACAGTTTC+AGG | 0.220476 | 4_4:-2308307 | None:intergenic |
| TCACCTATGTCTTGGACTTT+GGG | 0.223912 | 4_4:+2307335 | Msa0663440:CDS |
| GTCTTATCCTTTCTGTTAGA+AGG | 0.231603 | 4_4:-2308274 | None:intergenic |
| GTAACTCATTGGTTGGTAAA+AGG | 0.238223 | 4_4:+2309378 | Msa0663440:CDS |
| TTCACCTATGTCTTGGACTT+TGG | 0.253766 | 4_4:+2307334 | Msa0663440:CDS |
| TGAATCAGTCTTCATTCTTT+TGG | 0.266888 | 4_4:-2310391 | None:intergenic |
| GTGAAGAGTCTTAGACATTT+GGG | 0.275725 | 4_4:+2304885 | Msa0663440:CDS |
| ATCATCTCAATCCAATAAAA+AGG | 0.279727 | 4_4:+2308462 | Msa0663440:CDS |
| CACAGTATCCAGCTGAGTTT+TGG | 0.285566 | 4_4:-2308098 | None:intergenic |
| TTTACTTCACAGGGTTCTTC+AGG | 0.289524 | 4_4:-2307716 | None:intergenic |
| GCCTTCCTCGGGATTCATTA+AGG | 0.291880 | 4_4:-2308149 | None:intergenic |
| GATTCCGAAACTAAAGCTTC+TGG | 0.306478 | 4_4:-2308724 | None:intergenic |
| TACATAATGTGCATATATAT+TGG | 0.313306 | 4_4:+2310490 | Msa0663440:three_prime_UTR |
| GGTTCTTCAGGAGCATCTTT+AGG | 0.320848 | 4_4:-2307704 | None:intergenic |
| ATCATCTCAATCCAACAAAA+AGG | 0.324746 | 4_4:+2308213 | Msa0663440:CDS |
| AGTGAAGAGTCTTAGACATT+TGG | 0.337357 | 4_4:+2304884 | Msa0663440:CDS |
| AAATTATGTATAAAGTTTGA+TGG | 0.340639 | 4_4:+2309015 | Msa0663440:CDS |
| TCAATATTGACGCAGAATTA+GGG | 0.345215 | 4_4:-2308864 | None:intergenic |
| GATTCTTACATCTTGTCTAA+TGG | 0.348280 | 4_4:-2309416 | None:intergenic |
| TCATCATCATAAGGATCATT+TGG | 0.350083 | 4_4:-2305948 | None:intergenic |
| AGCACAAGTGATTCTTGAAT+TGG | 0.356473 | 4_4:-2305822 | None:intergenic |
| AAAACTTCTACTTCTGATAA+AGG | 0.360560 | 4_4:+2309195 | Msa0663440:CDS |
| TCGGGATTCATTAAGGAGTT+AGG | 0.360851 | 4_4:-2308142 | None:intergenic |
| TGATTTGGTTGATGATTTCA+TGG | 0.364782 | 4_4:+2310351 | Msa0663440:CDS |
| TGAATGATATCCTTTGTAAA+GGG | 0.372819 | 4_4:-2308775 | None:intergenic |
| GAAAACTTGTCTCATGCATC+TGG | 0.374684 | 4_4:+2306135 | Msa0663440:CDS |
| GGCTTACGTGCCCTCTTCCT+TGG | 0.376832 | 4_4:-2308121 | None:intergenic |
| TTTAAGTTTGACAGCACAAT+TGG | 0.385577 | 4_4:-2307372 | None:intergenic |
| TGTGAGAGATGTCCAAATTA+TGG | 0.390475 | 4_4:+2307901 | Msa0663440:CDS |
| ATTGATTCAATGACATTACT+TGG | 0.395549 | 4_4:-2307121 | None:intergenic |
| TTTCTTACACTATCTAATAA+GGG | 0.399284 | 4_4:-2307205 | None:intergenic |
| TATGGTACTTTCTGTTAGAA+TGG | 0.400005 | 4_4:+2310458 | Msa0663440:three_prime_UTR |
| AACTCCAGAAGCTTTAGTTT+CGG | 0.405413 | 4_4:+2308720 | Msa0663440:CDS |
| CTAATACCCTTGGTAGAATC+AGG | 0.409315 | 4_4:-2308421 | None:intergenic |
| GAAGGAAAGTTAGTAGCATT+GGG | 0.412857 | 4_4:+2308827 | Msa0663440:CDS |
| CTAATACCCTTGGTAGAATC+AGG | 0.413012 | 4_4:-2308670 | None:intergenic |
| CGTCTTTCGGAGTTTGTAGT+TGG | 0.414007 | 4_4:-2308019 | None:intergenic |
| GTCTTATCCTTTCTGGAAGA+AGG | 0.416398 | 4_4:-2308523 | None:intergenic |
| GCCACTGAATCATGACGTTC+TGG | 0.419168 | 4_4:-2307488 | None:intergenic |
| GGAGCTGTTATTGTTAAACT+TGG | 0.423021 | 4_4:+2305782 | Msa0663440:CDS |
| TGTTAATGTTTCACCAGATA+AGG | 0.428963 | 4_4:+2309748 | Msa0663440:CDS |
| CTCATACCTTCAGAATTTGA+CGG | 0.429675 | 4_4:-2308694 | None:intergenic |
| AATGAGTTACCAAGGTCTTC+AGG | 0.433833 | 4_4:-2309365 | None:intergenic |
| AACAGTTCTTGAGAATCATA+AGG | 0.434790 | 4_4:+2306265 | Msa0663440:CDS |
| TCTCTATTAAGTCTTCAAAC+AGG | 0.437119 | 4_4:-2310537 | None:intergenic |
| ATGAATGATATCCTTTGTAA+AGG | 0.439211 | 4_4:-2308776 | None:intergenic |
| ATGTTGTTGCAGATCTGATT+TGG | 0.440413 | 4_4:+2310336 | Msa0663440:intron |
| CGAAGGAAAGTTAGTAGCAT+TGG | 0.440766 | 4_4:+2308826 | Msa0663440:CDS |
| TCAGAAATCAGTGTCTTCAT+TGG | 0.441541 | 4_4:-2305846 | None:intergenic |
| GGTGACTACAGGGGTTGAAA+TGG | 0.442487 | 4_4:+2307868 | Msa0663440:intron |
| TCTGTTGAATCCCATGGTGC+TGG | 0.448568 | 4_4:+2308922 | Msa0663440:CDS |
| CACCTATGTCTTGGACTTTG+GGG | 0.449353 | 4_4:+2307336 | Msa0663440:CDS |
| ACAAAGATAATTTACTTCAC+AGG | 0.451346 | 4_4:-2307726 | None:intergenic |
| TCAACTGCTTTCATGAGATA+AGG | 0.452458 | 4_4:-2307395 | None:intergenic |
| AAGTAATGTCATTGAATCAA+TGG | 0.458006 | 4_4:+2307123 | Msa0663440:CDS |
| CTCAAATAGAAGTCGACAAA+AGG | 0.458161 | 4_4:+2309166 | Msa0663440:CDS |
| ATCCAAAAGCTTACTGAGAA+AGG | 0.460812 | 4_4:-2307749 | None:intergenic |
| AAAATAATAAATCTAAAGTA+AGG | 0.464205 | 4_4:+2308950 | Msa0663440:CDS |
| TGAAGACCTTGGTAACTCAT+TGG | 0.465576 | 4_4:+2309367 | Msa0663440:CDS |
| TCTTATCCTTTCTGTTAGAA+GGG | 0.471749 | 4_4:-2308273 | None:intergenic |
| CAAAATATTCTTGATCATGC+TGG | 0.472047 | 4_4:+2306206 | Msa0663440:CDS |
| TTCACTTTCGTTGAGTATCC+CGG | 0.473446 | 4_4:-2307158 | None:intergenic |
| AAAAGTAGTTAGGTCTATAG+AGG | 0.474198 | 4_4:+2310421 | Msa0663440:three_prime_UTR |
| AGATGATTTCACCTATGTCT+TGG | 0.477127 | 4_4:+2307327 | Msa0663440:intron |
| ACCTTAGCAACTATTGATTG+AGG | 0.489861 | 4_4:-2309054 | None:intergenic |
| CTTATTAGATAGTGTAAGAA+AGG | 0.491206 | 4_4:+2307207 | Msa0663440:CDS |
| AAATCTCAAGAATGAGCAAT+GGG | 0.493675 | 4_4:+2309715 | Msa0663440:CDS |
| CTGGAGATTCAGATTTATTG+TGG | 0.499658 | 4_4:-2307469 | None:intergenic |
| ATTCAATGACATTACTTGGA+TGG | 0.502945 | 4_4:-2307117 | None:intergenic |
| TCCTCAATCAATAGTTGCTA+AGG | 0.509624 | 4_4:+2309053 | Msa0663440:CDS |
| CAACAAATCATCTACTAAGA+AGG | 0.514239 | 4_4:+2309221 | Msa0663440:CDS |
| CTGTTAGAAGGGTTATCAGA+TGG | 0.516944 | 4_4:-2308262 | None:intergenic |
| AAGGTAGAAAATAGAGCAGA+GGG | 0.517522 | 4_4:+2309132 | Msa0663440:CDS |
| AGTGATTCTTGAATTGGCTC+AGG | 0.518183 | 4_4:-2305816 | None:intergenic |
| GTCGACTTCTATTTGAGCTG+AGG | 0.518676 | 4_4:-2309160 | None:intergenic |
| TGGATACTGTGCCAAGGAAG+AGG | 0.520681 | 4_4:+2308110 | Msa0663440:CDS |
| CAAAGATAATTTACTTCACA+GGG | 0.522829 | 4_4:-2307725 | None:intergenic |
| GGACCTTGAGTGTGATGACC+TGG | 0.525642 | 4_4:+2306227 | Msa0663440:CDS |
| ACAGAAGTCTTCTTATGTGA+AGG | 0.526563 | 4_4:-2308904 | None:intergenic |
| ACAAAGGATATCATTCATGA+AGG | 0.527116 | 4_4:+2308781 | Msa0663440:CDS |
| ATTTGACGGTCTAATACCCT+TGG | 0.527702 | 4_4:-2308680 | None:intergenic |
| ACTGAACTCCAAAACTCAGC+TGG | 0.528121 | 4_4:+2308090 | Msa0663440:CDS |
| TAATAAATCTAAAGTAAGGA+AGG | 0.530300 | 4_4:+2308954 | Msa0663440:CDS |
| GAATATCAACAGAAGAAGCT+AGG | 0.531018 | 4_4:-2304926 | None:intergenic |
| ATATTTCCTCGGATCTACTT+AGG | 0.532005 | 4_4:+2307182 | Msa0663440:CDS |
| GAGTGATTATAGCCTTCCTC+GGG | 0.533009 | 4_4:-2308160 | None:intergenic |
| ATGAAAGCAGTTGAATCCTC+AGG | 0.533089 | 4_4:+2307404 | Msa0663440:CDS |
| TGGCAATTTAGAGTCAGATC+AGG | 0.535035 | 4_4:+2308066 | Msa0663440:CDS |
| GACCTTGGTAACTCATTGGT+TGG | 0.537219 | 4_4:+2309371 | Msa0663440:CDS |
| TCTTATCCTTTCTGGAAGAA+GGG | 0.540051 | 4_4:-2308522 | None:intergenic |
| GAATCAGGACTTTCAATACA+TGG | 0.540794 | 4_4:-2308406 | None:intergenic |
| TTGGTAAAAGGATCAAGGTC+TGG | 0.544226 | 4_4:+2309390 | Msa0663440:CDS |
| CAAGTCGAGTACAAATACTA+AGG | 0.545604 | 4_4:+2309113 | Msa0663440:CDS |
| ATCGTCGACTGTAGCTGCAT+TGG | 0.547602 | 4_4:-2307951 | None:intergenic |
| TGCTACTAACTTTCCTTCGC+CGG | 0.549337 | 4_4:-2308822 | None:intergenic |
| ACCTATGTCTTGGACTTTGG+GGG | 0.551376 | 4_4:+2307337 | Msa0663440:CDS |
| GATTCTTGAATTGGCTCAGG+TGG | 0.552702 | 4_4:-2305813 | None:intergenic |
| CTGGAAGAAGGGTTATCAGA+TGG | 0.553404 | 4_4:-2308511 | None:intergenic |
| CTGTTGAATCCCATGGTGCT+GGG | 0.554351 | 4_4:+2308923 | Msa0663440:CDS |
| CAGAGCTCTCAATGAGTATG+TGG | 0.556970 | 4_4:+2307427 | Msa0663440:CDS |
| TGATAACCCTTCTAACAGAA+AGG | 0.558007 | 4_4:+2308267 | Msa0663440:CDS |
| ATTGGTTGGTAAAAGGATCA+AGG | 0.559916 | 4_4:+2309385 | Msa0663440:CDS |
| TCAATGGAGATAGTAATGAC+CGG | 0.560099 | 4_4:+2307139 | Msa0663440:CDS |
| AGAGTGATTATAGCCTTCCT+CGG | 0.561513 | 4_4:-2308161 | None:intergenic |
| TGATAACCCTTCTTCCAGAA+AGG | 0.562342 | 4_4:+2308516 | Msa0663440:CDS |
| GAAAGTCCTGATTCTACCAA+GGG | 0.568571 | 4_4:+2308415 | Msa0663440:CDS |
| TCAATCAATAGTTGCTAAGG+TGG | 0.574486 | 4_4:+2309056 | Msa0663440:CDS |
| CGAAAGTGAAGATATTTCCT+CGG | 0.575230 | 4_4:+2307171 | Msa0663440:CDS |
| ACTTGACTGTCTAATACCCT+TGG | 0.575744 | 4_4:-2308431 | None:intergenic |
| CAATGGAGATAGTAATGACC+GGG | 0.579241 | 4_4:+2307140 | Msa0663440:CDS |
| AAGACTTCTGTTGAATCCCA+TGG | 0.580295 | 4_4:+2308916 | Msa0663440:CDS |
| CTACTAAACGACGCCGGCGA+AGG | 0.581440 | 4_4:+2308809 | Msa0663440:CDS |
| TAGTGTAAGAAAGGAGAACC+AGG | 0.582669 | 4_4:+2307216 | Msa0663440:CDS |
| AGTTGCTAAGGTGGAATCTG+AGG | 0.584626 | 4_4:+2309065 | Msa0663440:CDS |
| GAGTTTGTAGTTGGACAAGA+AGG | 0.586572 | 4_4:-2308010 | None:intergenic |
| GGATACTGTGCCAAGGAAGA+GGG | 0.587491 | 4_4:+2308111 | Msa0663440:CDS |
| AAAAGATGTTCCCTTTACAA+AGG | 0.587511 | 4_4:+2308765 | Msa0663440:CDS |
| GAGAGACATGAGGCACCCGT+TGG | 0.588587 | 4_4:+2308985 | Msa0663440:CDS |
| TAAATCTCAAGAATGAGCAA+TGG | 0.589764 | 4_4:+2309714 | Msa0663440:CDS |
| GAAAGTCCTGATTCTACCAA+GGG | 0.595423 | 4_4:+2308664 | Msa0663440:CDS |
| TCCTTAATGAATCCCGAGGA+AGG | 0.597597 | 4_4:+2308148 | Msa0663440:CDS |
| TACCAACCAATGAGTTACCA+AGG | 0.601777 | 4_4:-2309373 | None:intergenic |
| GAATCAGGACTTTCAATGCA+CGG | 0.606289 | 4_4:-2308655 | None:intergenic |
| TAAGGTAGAAAATAGAGCAG+AGG | 0.608082 | 4_4:+2309131 | Msa0663440:CDS |
| AATGCTTATGATCATGTCAA+CGG | 0.608579 | 4_4:+2309650 | Msa0663440:CDS |
| CAACTACAAACTCCGAAAGA+CGG | 0.611955 | 4_4:+2308020 | Msa0663440:CDS |
| GTTGTACGACGACGATGTTG+AGG | 0.620195 | 4_4:+2309685 | Msa0663440:CDS |
| CTCAGCTGGATACTGTGCCA+AGG | 0.623764 | 4_4:+2308104 | Msa0663440:CDS |
| ATTAGACCGTCAAATTCTGA+AGG | 0.624919 | 4_4:+2308688 | Msa0663440:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_4:+2308414 | Msa0663440:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_4:+2308663 | Msa0663440:CDS |
| TCATGTCAACGGAAAGCACA+AGG | 0.629953 | 4_4:+2309661 | Msa0663440:CDS |
| TCCAGAACGTCATGATTCAG+TGG | 0.630622 | 4_4:+2307487 | Msa0663440:CDS |
| GCACATGAACCTGAAGACCT+TGG | 0.631015 | 4_4:+2309356 | Msa0663440:CDS |
| TTAGTTTCGGAATCTAAACA+AGG | 0.632479 | 4_4:+2308733 | Msa0663440:CDS |
| CTCATTGAGAGCTCTGCCTG+AGG | 0.637114 | 4_4:-2307420 | None:intergenic |
| TGAAGAGTCTTAGACATTTG+GGG | 0.637901 | 4_4:+2304886 | Msa0663440:CDS |
| AATTATGGATGAGACAAAGT+CGG | 0.639921 | 4_4:+2307916 | Msa0663440:CDS |
| AAAGTTTGATGGAAAAGTTG+TGG | 0.647463 | 4_4:+2309026 | Msa0663440:CDS |
| TTAGCAACTATTGATTGAGG+AGG | 0.647638 | 4_4:-2309051 | None:intergenic |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.651899 | 4_4:+2308547 | Msa0663440:CDS |
| GTAAAAGGATCAAGGTCTGG+TGG | 0.652291 | 4_4:+2309393 | Msa0663440:CDS |
| TAAGGGCCTAAGTAGATCCG+AGG | 0.654700 | 4_4:-2307188 | None:intergenic |
| GGATTCTGAAGAGAGACATG+AGG | 0.659071 | 4_4:+2308975 | Msa0663440:CDS |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.664317 | 4_4:+2308298 | Msa0663440:CDS |
| CAACCAGGTCATCACACTCA+AGG | 0.666022 | 4_4:-2306230 | None:intergenic |
| TTTAAAACAGGTGACTACAG+GGG | 0.683524 | 4_4:+2307859 | Msa0663440:intron |
| GTAGAAAATAGAGCAGAGGG+AGG | 0.685228 | 4_4:+2309135 | Msa0663440:CDS |
| GAACATGTGAATGTTAACGT+AGG | 0.689287 | 4_4:+2310512 | Msa0663440:three_prime_UTR |
| AAGGAAAGTTAGTAGCATTG+GGG | 0.690442 | 4_4:+2308828 | Msa0663440:CDS |
| TAACTCCTTAATGAATCCCG+AGG | 0.696649 | 4_4:+2308144 | Msa0663440:CDS |
| GTTGAAACATCTCAACAACC+AGG | 0.707803 | 4_4:-2306245 | None:intergenic |
| AGAACGTCATGATTCAGTGG+CGG | 0.724032 | 4_4:+2307490 | Msa0663440:CDS |
| GAAGCTCTACTAAACGACGC+CGG | 0.767843 | 4_4:+2308803 | Msa0663440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTGTTATTTGTTATT+TGG | + | chr4_4:2307257-2307276 | Msa0663440:intron | 10.0% |
| !!! | AAAATAATAAATCTAAAGTA+AGG | + | chr4_4:2308950-2308969 | Msa0663440:CDS | 10.0% |
| !! | TCAATAGATACATTAAAAAA+AGG | - | chr4_4:2304993-2305012 | None:intergenic | 15.0% |
| !! | TAAACTAAATATAAATCCTT+AGG | - | chr4_4:2305640-2305659 | None:intergenic | 15.0% |
| !!! | AAGAATTTGAAATTAATGTA+AGG | + | chr4_4:2307627-2307646 | Msa0663440:intron | 15.0% |
| !!! | ATCTTCATTATTTTTAAAAC+AGG | + | chr4_4:2307847-2307866 | Msa0663440:intron | 15.0% |
| !! | AAATTATGTATAAAGTTTGA+TGG | + | chr4_4:2309015-2309034 | Msa0663440:CDS | 15.0% |
| !!! | AAAAATCTTTACTTTTCTTT+AGG | + | chr4_4:2309334-2309353 | Msa0663440:intron | 15.0% |
| !! | TTCCATTATTATATAATTTG+TGG | + | chr4_4:2310261-2310280 | Msa0663440:intron | 15.0% |
| !! | ATCCACAAATTATATAATAA+TGG | - | chr4_4:2310266-2310285 | None:intergenic | 15.0% |
| !! | TACATTAAAAAAAGGAAGAA+AGG | - | chr4_4:2304985-2305004 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | + | chr4_4:2305317-2305336 | Msa0663440:intron | 20.0% |
| !! | GATATTTGATGTTTCAAATT+AGG | + | chr4_4:2305688-2305707 | Msa0663440:intron | 20.0% |
| !!! | TGATTTTCACTTTTAGAAAA+TGG | + | chr4_4:2305761-2305780 | Msa0663440:intron | 20.0% |
| !!! | TTCATTTTTTCATCATCATA+AGG | - | chr4_4:2305960-2305979 | None:intergenic | 20.0% |
| !!! | TTATGATGATGAAAAAATGA+AGG | + | chr4_4:2305959-2305978 | Msa0663440:CDS | 20.0% |
| !! | TTTATACTCATCATCTATTA+TGG | - | chr4_4:2306021-2306040 | None:intergenic | 20.0% |
| !!! | CTTTGAAATTTTTTCAAGTA+TGG | - | chr4_4:2306184-2306203 | None:intergenic | 20.0% |
| !!! | AAAAAGTATTTTGAGAATGA+TGG | - | chr4_4:2306341-2306360 | None:intergenic | 20.0% |
| !!! | AATACTTTTTATGTTACTTC+CGG | + | chr4_4:2306351-2306370 | Msa0663440:intron | 20.0% |
| !!! | TATATTGCTAAAAAGTTGAT+TGG | + | chr4_4:2307024-2307043 | Msa0663440:intron | 20.0% |
| !! | TTTCTTACACTATCTAATAA+GGG | - | chr4_4:2307208-2307227 | None:intergenic | 20.0% |
| !! | GATTGACAAAGTAAAATAAA+AGG | - | chr4_4:2307286-2307305 | None:intergenic | 20.0% |
| !!! | CAAAATGTTTTGATTCAAAA+AGG | + | chr4_4:2307981-2308000 | Msa0663440:CDS | 20.0% |
| !! | TAGTTTCTGATCTTAAAAAT+GGG | + | chr4_4:2308329-2308348 | Msa0663440:CDS | 20.0% |
| !!! | ACTTTTATCACAGTTTTTTT+TGG | - | chr4_4:2308377-2308396 | None:intergenic | 20.0% |
| !!! | ACTTTTATCACAGTTTTTTT+TGG | - | chr4_4:2308377-2308396 | None:intergenic | 20.0% |
| !!! | TAATAAATCTAAAGTAAGGA+AGG | + | chr4_4:2308954-2308973 | Msa0663440:CDS | 20.0% |
| !!! | ACATAATTTGATTTTTCCAA+CGG | - | chr4_4:2309004-2309023 | None:intergenic | 20.0% |
| !! | TACATAATGTGCATATATAT+TGG | + | chr4_4:2310490-2310509 | Msa0663440:three_prime_UTR | 20.0% |
| ! | TTAATTAGATGCAAACCTTA+TGG | + | chr4_4:2305195-2305214 | Msa0663440:intron | 25.0% |
| ! | TTAGGCATAACAATGTAATT+AGG | + | chr4_4:2305706-2305725 | Msa0663440:intron | 25.0% |
| ! | TGTCGTGTAATAATTATTAC+AGG | - | chr4_4:2306438-2306457 | None:intergenic | 25.0% |
| ! | TAAAAACAATGCAAAACCAA+AGG | - | chr4_4:2306567-2306586 | None:intergenic | 25.0% |
| ! | AAAACTTTGTTGAATCCTTA+GGG | + | chr4_4:2306702-2306721 | Msa0663440:intron | 25.0% |
| ! | ATTTATCTAACAGTAGCTTA+AGG | - | chr4_4:2306911-2306930 | None:intergenic | 25.0% |
| !!! | TTTTTAGCAATATAAGCAAG+GGG | - | chr4_4:2307018-2307037 | None:intergenic | 25.0% |
| !!! | CTTTTTAGCAATATAAGCAA+GGG | - | chr4_4:2307019-2307038 | None:intergenic | 25.0% |
| !!! | ACTTTTTAGCAATATAAGCA+AGG | - | chr4_4:2307020-2307039 | None:intergenic | 25.0% |
| !! | ATTGATTCAATGACATTACT+TGG | - | chr4_4:2307124-2307143 | None:intergenic | 25.0% |
| ! | AAGTAATGTCATTGAATCAA+TGG | + | chr4_4:2307123-2307142 | Msa0663440:CDS | 25.0% |
| ! | CTTTCTTACACTATCTAATA+AGG | - | chr4_4:2307209-2307228 | None:intergenic | 25.0% |
| ! | CTTATTAGATAGTGTAAGAA+AGG | + | chr4_4:2307207-2307226 | Msa0663440:CDS | 25.0% |
| !! | TTTTACTTTGTCAATCTTGT+TGG | + | chr4_4:2307290-2307309 | Msa0663440:intron | 25.0% |
| !! | CTTCAAAAGAATTAGTTTGA+AGG | - | chr4_4:2307576-2307595 | None:intergenic | 25.0% |
| ! | CAAAGATAATTTACTTCACA+GGG | - | chr4_4:2307728-2307747 | None:intergenic | 25.0% |
| ! | ACAAAGATAATTTACTTCAC+AGG | - | chr4_4:2307729-2307748 | None:intergenic | 25.0% |
| ! | ACTCACAATTATTATAATGC+TGG | + | chr4_4:2307785-2307804 | Msa0663440:intron | 25.0% |
| ! | CTAGTTTCTGATCTTAAAAA+TGG | + | chr4_4:2308328-2308347 | Msa0663440:CDS | 25.0% |
| ! | ATCATCTCAATCCAATAAAA+AGG | + | chr4_4:2308462-2308481 | Msa0663440:CDS | 25.0% |
| !!! | ACATTTTTAAGATCAGAAAC+TGG | - | chr4_4:2308580-2308599 | None:intergenic | 25.0% |
| ! | TGAATGATATCCTTTGTAAA+GGG | - | chr4_4:2308778-2308797 | None:intergenic | 25.0% |
| ! | ATGAATGATATCCTTTGTAA+AGG | - | chr4_4:2308779-2308798 | None:intergenic | 25.0% |
| !!! | CATAATTTGATTTTTCCAAC+GGG | - | chr4_4:2309003-2309022 | None:intergenic | 25.0% |
| ! | AAAACTTCTACTTCTGATAA+AGG | + | chr4_4:2309195-2309214 | Msa0663440:CDS | 25.0% |
| ! | ATAACGAAGAATAATGATGA+TGG | - | chr4_4:2309300-2309319 | None:intergenic | 25.0% |
| ! | ATTTGAGAAAATGTAAGTGT+CGG | + | chr4_4:2310045-2310064 | Msa0663440:intron | 25.0% |
| ! | AAGTAAACCTGCTATATTAT+GGG | - | chr4_4:2310182-2310201 | None:intergenic | 25.0% |
| ! | AAAGTAAACCTGCTATATTA+TGG | - | chr4_4:2310183-2310202 | None:intergenic | 25.0% |
| ! | GAATAGAACAGTATGTTTAT+TGG | - | chr4_4:2310244-2310263 | None:intergenic | 25.0% |
| GTTCAATTACAGTGTAATTC+AGG | - | chr4_4:2305046-2305065 | None:intergenic | 30.0% | |
| TTACACTGTAATTGAACTTC+TGG | + | chr4_4:2305049-2305068 | Msa0663440:intron | 30.0% | |
| !! | GTGTCAATTTTTGTTTCCTA+AGG | + | chr4_4:2305621-2305640 | Msa0663440:intron | 30.0% |
| AGTGAAAATCACAAAACAGA+AGG | - | chr4_4:2305752-2305771 | None:intergenic | 30.0% | |
| TCATCATCATAAGGATCATT+TGG | - | chr4_4:2305951-2305970 | None:intergenic | 30.0% | |
| AAATTCCTGTTAACAGTGAA+CGG | - | chr4_4:2306091-2306110 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTAAGCTTACAG+TGG | + | chr4_4:2306104-2306123 | Msa0663440:intron | 30.0% |
| CAAAATATTCTTGATCATGC+TGG | + | chr4_4:2306206-2306225 | Msa0663440:CDS | 30.0% | |
| AACAGTTCTTGAGAATCATA+AGG | + | chr4_4:2306265-2306284 | Msa0663440:CDS | 30.0% | |
| ! | TTTCTCTTTTCTACAAGCTT+GGG | - | chr4_4:2306653-2306672 | None:intergenic | 30.0% |
| GTTATGTAATCGATAATCGA+AGG | + | chr4_4:2306679-2306698 | Msa0663440:intron | 30.0% | |
| GAAAACTTTGTTGAATCCTT+AGG | + | chr4_4:2306701-2306720 | Msa0663440:intron | 30.0% | |
| AGTGAATGAAAACTTGAAAG+TGG | - | chr4_4:2307065-2307084 | None:intergenic | 30.0% | |
| !! | TTCAAGTTTTCATTCACTTC+TGG | + | chr4_4:2307067-2307086 | Msa0663440:intron | 30.0% |
| GTATTGTTCGCTCAATTTAA+AGG | + | chr4_4:2307089-2307108 | Msa0663440:intron | 30.0% | |
| ATTCAATGACATTACTTGGA+TGG | - | chr4_4:2307120-2307139 | None:intergenic | 30.0% | |
| ! | TTTAAGTTTGACAGCACAAT+TGG | - | chr4_4:2307375-2307394 | None:intergenic | 30.0% |
| AACAACAACAACAACAGTTA+AGG | - | chr4_4:2307523-2307542 | None:intergenic | 30.0% | |
| !!! | TTTTTAAAACAGGTGACTAC+AGG | + | chr4_4:2307857-2307876 | Msa0663440:intron | 30.0% |
| !!! | TTTTAAAACAGGTGACTACA+GGG | + | chr4_4:2307858-2307877 | Msa0663440:intron | 30.0% |
| ACTTTGTCTCATCCATAATT+TGG | - | chr4_4:2307916-2307935 | None:intergenic | 30.0% | |
| AATTATGGATGAGACAAAGT+CGG | + | chr4_4:2307916-2307935 | Msa0663440:CDS | 30.0% | |
| ATCATCTCAATCCAACAAAA+AGG | + | chr4_4:2308213-2308232 | Msa0663440:CDS | 30.0% | |
| TCTTATCCTTTCTGTTAGAA+GGG | - | chr4_4:2308276-2308295 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTTTGGATTTAGC+AGG | - | chr4_4:2308367-2308386 | None:intergenic | 30.0% |
| !!! | CAGTTTTTTTTGGATTTAGC+AGG | - | chr4_4:2308367-2308386 | None:intergenic | 30.0% |
| TTAGTTTCGGAATCTAAACA+AGG | + | chr4_4:2308733-2308752 | Msa0663440:CDS | 30.0% | |
| AAAAGATGTTCCCTTTACAA+AGG | + | chr4_4:2308765-2308784 | Msa0663440:CDS | 30.0% | |
| ACAAAGGATATCATTCATGA+AGG | + | chr4_4:2308781-2308800 | Msa0663440:CDS | 30.0% | |
| TCAATATTGACGCAGAATTA+GGG | - | chr4_4:2308867-2308886 | None:intergenic | 30.0% | |
| TTCAATATTGACGCAGAATT+AGG | - | chr4_4:2308868-2308887 | None:intergenic | 30.0% | |
| AAAGTTTGATGGAAAAGTTG+TGG | + | chr4_4:2309026-2309045 | Msa0663440:CDS | 30.0% | |
| CAACAAATCATCTACTAAGA+AGG | + | chr4_4:2309221-2309240 | Msa0663440:CDS | 30.0% | |
| GATTCTTACATCTTGTCTAA+TGG | - | chr4_4:2309419-2309438 | None:intergenic | 30.0% | |
| !! | GAGTAATCTTACTTTGAAAC+TGG | - | chr4_4:2309493-2309512 | None:intergenic | 30.0% |
| GTTTCAAAGTAAGATTACTC+TGG | + | chr4_4:2309493-2309512 | Msa0663440:intron | 30.0% | |
| ! | TGTGTGTAATTATTTTCTGC+AGG | + | chr4_4:2309609-2309628 | Msa0663440:intron | 30.0% |
| ! | ATTTTCTGCAGGTATTATGA+AGG | + | chr4_4:2309620-2309639 | Msa0663440:intron | 30.0% |
| AATGCTTATGATCATGTCAA+CGG | + | chr4_4:2309650-2309669 | Msa0663440:CDS | 30.0% | |
| TAAATCTCAAGAATGAGCAA+TGG | + | chr4_4:2309714-2309733 | Msa0663440:CDS | 30.0% | |
| AAATCTCAAGAATGAGCAAT+GGG | + | chr4_4:2309715-2309734 | Msa0663440:CDS | 30.0% | |
| TGTTAATGTTTCACCAGATA+AGG | + | chr4_4:2309748-2309767 | Msa0663440:CDS | 30.0% | |
| !! | AGTTTTGTACTAACCTTATC+TGG | - | chr4_4:2309764-2309783 | None:intergenic | 30.0% |
| ATGAGATACATGATAGTACA+AGG | - | chr4_4:2309881-2309900 | None:intergenic | 30.0% | |
| AGAACAGTATGTTTATTGGA+TGG | - | chr4_4:2310240-2310259 | None:intergenic | 30.0% | |
| !! | TGATTTGGTTGATGATTTCA+TGG | + | chr4_4:2310351-2310370 | Msa0663440:CDS | 30.0% |
| !! | CTTCATTCTTTTGGTGATAT+AGG | - | chr4_4:2310385-2310404 | None:intergenic | 30.0% |
| ! | TGAATCAGTCTTCATTCTTT+TGG | - | chr4_4:2310394-2310413 | None:intergenic | 30.0% |
| !! | CTATAGACCTAACTACTTTT+TGG | - | chr4_4:2310421-2310440 | None:intergenic | 30.0% |
| AAAAGTAGTTAGGTCTATAG+AGG | + | chr4_4:2310421-2310440 | Msa0663440:three_prime_UTR | 30.0% | |
| TATGGTACTTTCTGTTAGAA+TGG | + | chr4_4:2310458-2310477 | Msa0663440:three_prime_UTR | 30.0% | |
| TCTCTATTAAGTCTTCAAAC+AGG | - | chr4_4:2310540-2310559 | None:intergenic | 30.0% | |
| AGTGAAGAGTCTTAGACATT+TGG | + | chr4_4:2304884-2304903 | Msa0663440:CDS | 35.0% | |
| GTGAAGAGTCTTAGACATTT+GGG | + | chr4_4:2304885-2304904 | Msa0663440:CDS | 35.0% | |
| TGAAGAGTCTTAGACATTTG+GGG | + | chr4_4:2304886-2304905 | Msa0663440:CDS | 35.0% | |
| ! | AACAGAAGAAGCTAGGTTTT+TGG | - | chr4_4:2304922-2304941 | None:intergenic | 35.0% |
| GAATATCAACAGAAGAAGCT+AGG | - | chr4_4:2304929-2304948 | None:intergenic | 35.0% | |
| TGTCTTCTGATCATGAGTTT+AGG | + | chr4_4:2305131-2305150 | Msa0663440:intron | 35.0% | |
| GTCTTCTGATCATGAGTTTA+GGG | + | chr4_4:2305132-2305151 | Msa0663440:intron | 35.0% | |
| ATGCAGTAAACAACTGTAAG+AGG | - | chr4_4:2305663-2305682 | None:intergenic | 35.0% | |
| GGAGCTGTTATTGTTAAACT+TGG | + | chr4_4:2305782-2305801 | Msa0663440:CDS | 35.0% | |
| AGCACAAGTGATTCTTGAAT+TGG | - | chr4_4:2305825-2305844 | None:intergenic | 35.0% | |
| TCAGAAATCAGTGTCTTCAT+TGG | - | chr4_4:2305849-2305868 | None:intergenic | 35.0% | |
| !!! | TAAGTGCTTTTTCGTATCTG+CGG | - | chr4_4:2306161-2306180 | None:intergenic | 35.0% |
| ACAAAGACTGTCACAAATAC+TGG | + | chr4_4:2306301-2306320 | Msa0663440:intron | 35.0% | |
| TGTGTCAGTGTTACATAAAC+CGG | - | chr4_4:2306373-2306392 | None:intergenic | 35.0% | |
| ! | ACCTCTTCAATCTAAAGTGT+CGG | + | chr4_4:2306510-2306529 | Msa0663440:intron | 35.0% |
| AACAATGCAAAACCAAAGGA+AGG | - | chr4_4:2306563-2306582 | None:intergenic | 35.0% | |
| CAAAGATTTGCAACAAAGCA+CGG | - | chr4_4:2306620-2306639 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTTTCTACAAGCT+TGG | - | chr4_4:2306654-2306673 | None:intergenic | 35.0% |
| CAAGCTTGTAGAAAAGAGAA+AGG | + | chr4_4:2306652-2306671 | Msa0663440:intron | 35.0% | |
| ACGGATCATCTATGTGATAA+TGG | + | chr4_4:2306726-2306745 | Msa0663440:intron | 35.0% | |
| TCTGATAAGTCATTGCTCAT+AGG | + | chr4_4:2306750-2306769 | Msa0663440:intron | 35.0% | |
| AGCTTAAGGCTTAAGCTATT+AGG | - | chr4_4:2306897-2306916 | None:intergenic | 35.0% | |
| TCAATGGAGATAGTAATGAC+CGG | + | chr4_4:2307139-2307158 | Msa0663440:CDS | 35.0% | |
| CGAAAGTGAAGATATTTCCT+CGG | + | chr4_4:2307171-2307190 | Msa0663440:CDS | 35.0% | |
| ATATTTCCTCGGATCTACTT+AGG | + | chr4_4:2307182-2307201 | Msa0663440:CDS | 35.0% | |
| ATAATGCAAAGCATGTTACC+TGG | - | chr4_4:2307237-2307256 | None:intergenic | 35.0% | |
| AGACATAGGTGAAATCATCT+GGG | - | chr4_4:2307327-2307346 | None:intergenic | 35.0% | |
| AAGACATAGGTGAAATCATC+TGG | - | chr4_4:2307328-2307347 | None:intergenic | 35.0% | |
| AGATGATTTCACCTATGTCT+TGG | + | chr4_4:2307327-2307346 | Msa0663440:intron | 35.0% | |
| TCAACTGCTTTCATGAGATA+AGG | - | chr4_4:2307398-2307417 | None:intergenic | 35.0% | |
| CTGGAGATTCAGATTTATTG+TGG | - | chr4_4:2307472-2307491 | None:intergenic | 35.0% | |
| !!! | TCTTTTGAAGAAGTGCTAAG+TGG | + | chr4_4:2307586-2307605 | Msa0663440:intron | 35.0% |
| ATCCAAAAGCTTACTGAGAA+AGG | - | chr4_4:2307752-2307771 | None:intergenic | 35.0% | |
| ! | TTTAAAACAGGTGACTACAG+GGG | + | chr4_4:2307859-2307878 | Msa0663440:intron | 35.0% |
| TGTGAGAGATGTCCAAATTA+TGG | + | chr4_4:2307901-2307920 | Msa0663440:CDS | 35.0% | |
| ! | AGTTTTTGCATTCCGTCTTT+CGG | - | chr4_4:2308035-2308054 | None:intergenic | 35.0% |
| !! | GCAAAAACTAGTTCTGAAAC+TGG | + | chr4_4:2308046-2308065 | Msa0663440:CDS | 35.0% |
| TGATAACCCTTCTAACAGAA+AGG | + | chr4_4:2308267-2308286 | Msa0663440:CDS | 35.0% | |
| GTCTTATCCTTTCTGTTAGA+AGG | - | chr4_4:2308277-2308296 | None:intergenic | 35.0% | |
| GAATCAGGACTTTCAATACA+TGG | - | chr4_4:2308409-2308428 | None:intergenic | 35.0% | |
| ! | GTCATCATGAGCCTTTTTAT+TGG | - | chr4_4:2308476-2308495 | None:intergenic | 35.0% |
| ! | TCTTATCCTTTCTGGAAGAA+GGG | - | chr4_4:2308525-2308544 | None:intergenic | 35.0% |
| ATTAGACCGTCAAATTCTGA+AGG | + | chr4_4:2308688-2308707 | Msa0663440:CDS | 35.0% | |
| CTCATACCTTCAGAATTTGA+CGG | - | chr4_4:2308697-2308716 | None:intergenic | 35.0% | |
| ! | AACTCCAGAAGCTTTAGTTT+CGG | + | chr4_4:2308720-2308739 | Msa0663440:CDS | 35.0% |
| GAAGGAAAGTTAGTAGCATT+GGG | + | chr4_4:2308827-2308846 | Msa0663440:CDS | 35.0% | |
| AAGGAAAGTTAGTAGCATTG+GGG | + | chr4_4:2308828-2308847 | Msa0663440:CDS | 35.0% | |
| ACAGAAGTCTTCTTATGTGA+AGG | - | chr4_4:2308907-2308926 | None:intergenic | 35.0% | |
| ! | TTAGCAACTATTGATTGAGG+AGG | - | chr4_4:2309054-2309073 | None:intergenic | 35.0% |
| TCCTCAATCAATAGTTGCTA+AGG | + | chr4_4:2309053-2309072 | Msa0663440:CDS | 35.0% | |
| ! | ACCTTAGCAACTATTGATTG+AGG | - | chr4_4:2309057-2309076 | None:intergenic | 35.0% |
| TCAATCAATAGTTGCTAAGG+TGG | + | chr4_4:2309056-2309075 | Msa0663440:CDS | 35.0% | |
| CAAGTCGAGTACAAATACTA+AGG | + | chr4_4:2309113-2309132 | Msa0663440:CDS | 35.0% | |
| TAAGGTAGAAAATAGAGCAG+AGG | + | chr4_4:2309131-2309150 | Msa0663440:CDS | 35.0% | |
| AAGGTAGAAAATAGAGCAGA+GGG | + | chr4_4:2309132-2309151 | Msa0663440:CDS | 35.0% | |
| CTCAAATAGAAGTCGACAAA+AGG | + | chr4_4:2309166-2309185 | Msa0663440:CDS | 35.0% | |
| !! | GTAACTCATTGGTTGGTAAA+AGG | + | chr4_4:2309378-2309397 | Msa0663440:CDS | 35.0% |
| !! | ATTGGTTGGTAAAAGGATCA+AGG | + | chr4_4:2309385-2309404 | Msa0663440:CDS | 35.0% |
| TCATGTATCTCATTATGTGC+AGG | + | chr4_4:2309888-2309907 | Msa0663440:intron | 35.0% | |
| ! | ACCTTTAAGAGACTTCAACT+TGG | - | chr4_4:2309936-2309955 | None:intergenic | 35.0% |
| ATTATTACTGTCCGATGTGT+CGG | - | chr4_4:2310027-2310046 | None:intergenic | 35.0% | |
| CAAAAAGCCCATAATATAGC+AGG | + | chr4_4:2310172-2310191 | Msa0663440:intron | 35.0% | |
| ATGTTGTTGCAGATCTGATT+TGG | + | chr4_4:2310336-2310355 | Msa0663440:intron | 35.0% | |
| !! | CATTCTTTTGGTGATATAGG+TGG | - | chr4_4:2310382-2310401 | None:intergenic | 35.0% |
| TCACACACCAAAAAGTAGTT+AGG | + | chr4_4:2310411-2310430 | Msa0663440:three_prime_UTR | 35.0% | |
| GAGGAATGTGTCAAACTTTA+TGG | + | chr4_4:2310440-2310459 | Msa0663440:three_prime_UTR | 35.0% | |
| GAACATGTGAATGTTAACGT+AGG | + | chr4_4:2310512-2310531 | Msa0663440:three_prime_UTR | 35.0% | |
| ! | TGAGTTTAGGGCTTGTGTTA+TGG | + | chr4_4:2305144-2305163 | Msa0663440:intron | 40.0% |
| CAAATTATTACCGGTGTCTG+TGG | + | chr4_4:2305326-2305345 | Msa0663440:intron | 40.0% | |
| ACTCTGCTCAATGCCAATTT+CGG | + | chr4_4:2305397-2305416 | Msa0663440:intron | 40.0% | |
| CAGTGCATGATAGAACACTA+TGG | + | chr4_4:2305465-2305484 | Msa0663440:intron | 40.0% | |
| ! | AGTGATTCTTGAATTGGCTC+AGG | - | chr4_4:2305819-2305838 | None:intergenic | 40.0% |
| GAAAACTTGTCTCATGCATC+TGG | + | chr4_4:2306135-2306154 | Msa0663440:CDS | 40.0% | |
| GTTGAAACATCTCAACAACC+AGG | - | chr4_4:2306248-2306267 | None:intergenic | 40.0% | |
| TTATTACACGACACTGCCAT+TGG | + | chr4_4:2306445-2306464 | Msa0663440:intron | 40.0% | |
| TGATTCAACAACGACACATG+TGG | - | chr4_4:2306474-2306493 | None:intergenic | 40.0% | |
| GTTGAATCAGTGTCAGACAA+CGG | + | chr4_4:2306485-2306504 | Msa0663440:intron | 40.0% | |
| ACCGACACTTTAGATTGAAG+AGG | - | chr4_4:2306514-2306533 | None:intergenic | 40.0% | |
| TGAAACTTGATGCCTTCCTT+TGG | + | chr4_4:2306548-2306567 | Msa0663440:intron | 40.0% | |
| GTTGCAAATCTTTGCATGAC+CGG | + | chr4_4:2306626-2306645 | Msa0663440:intron | 40.0% | |
| TTTGTTGAATCCTTAGGGCA+CGG | + | chr4_4:2306707-2306726 | Msa0663440:intron | 40.0% | |
| ! | AATCAGAGCCTTTTCACACT+AGG | - | chr4_4:2306830-2306849 | None:intergenic | 40.0% |
| AGGCTTAAGCTATTAGGTGA+AGG | - | chr4_4:2306891-2306910 | None:intergenic | 40.0% | |
| CAATGGAGATAGTAATGACC+GGG | + | chr4_4:2307140-2307159 | Msa0663440:CDS | 40.0% | |
| TTCACTTTCGTTGAGTATCC+CGG | - | chr4_4:2307161-2307180 | None:intergenic | 40.0% | |
| TAGTGTAAGAAAGGAGAACC+AGG | + | chr4_4:2307216-2307235 | Msa0663440:CDS | 40.0% | |
| GACATAGGTGAAATCATCTG+GGG | - | chr4_4:2307326-2307345 | None:intergenic | 40.0% | |
| TTCACCTATGTCTTGGACTT+TGG | + | chr4_4:2307334-2307353 | Msa0663440:CDS | 40.0% | |
| TCACCTATGTCTTGGACTTT+GGG | + | chr4_4:2307335-2307354 | Msa0663440:CDS | 40.0% | |
| ATGAAAGCAGTTGAATCCTC+AGG | + | chr4_4:2307404-2307423 | Msa0663440:CDS | 40.0% | |
| TGATTGTGTTGCAATGCTTC+AGG | + | chr4_4:2307652-2307671 | Msa0663440:intron | 40.0% | |
| TTTACTTCACAGGGTTCTTC+AGG | - | chr4_4:2307719-2307738 | None:intergenic | 40.0% | |
| ! | GTCCTTTCTCAGTAAGCTTT+TGG | + | chr4_4:2307747-2307766 | Msa0663440:intron | 40.0% |
| !! | TGCTGGCTTCATCAAATCAT+TGG | + | chr4_4:2307802-2307821 | Msa0663440:intron | 40.0% |
| GAGTTTGTAGTTGGACAAGA+AGG | - | chr4_4:2308013-2308032 | None:intergenic | 40.0% | |
| CAACTACAAACTCCGAAAGA+CGG | + | chr4_4:2308020-2308039 | Msa0663440:CDS | 40.0% | |
| ! | TGGCAATTTAGAGTCAGATC+AGG | + | chr4_4:2308066-2308085 | Msa0663440:CDS | 40.0% |
| TCGGGATTCATTAAGGAGTT+AGG | - | chr4_4:2308145-2308164 | None:intergenic | 40.0% | |
| TAACTCCTTAATGAATCCCG+AGG | + | chr4_4:2308144-2308163 | Msa0663440:CDS | 40.0% | |
| AGAGTGATTATAGCCTTCCT+CGG | - | chr4_4:2308164-2308183 | None:intergenic | 40.0% | |
| ! | GTCATCATGAGCCTTTTTGT+TGG | - | chr4_4:2308227-2308246 | None:intergenic | 40.0% |
| CTGTTAGAAGGGTTATCAGA+TGG | - | chr4_4:2308265-2308284 | None:intergenic | 40.0% | |
| TGAAAGTCCTGATTCTACCA+AGG | + | chr4_4:2308414-2308433 | Msa0663440:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | + | chr4_4:2308415-2308434 | Msa0663440:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | - | chr4_4:2308424-2308443 | None:intergenic | 40.0% | |
| ACTTGACTGTCTAATACCCT+TGG | - | chr4_4:2308434-2308453 | None:intergenic | 40.0% | |
| TGATAACCCTTCTTCCAGAA+AGG | + | chr4_4:2308516-2308535 | Msa0663440:CDS | 40.0% | |
| ! | GTCTTATCCTTTCTGGAAGA+AGG | - | chr4_4:2308526-2308545 | None:intergenic | 40.0% |
| GAATCAGGACTTTCAATGCA+CGG | - | chr4_4:2308658-2308677 | None:intergenic | 40.0% | |
| TGAAAGTCCTGATTCTACCA+AGG | + | chr4_4:2308414-2308433 | Msa0663440:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | + | chr4_4:2308415-2308434 | Msa0663440:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | - | chr4_4:2308424-2308443 | None:intergenic | 40.0% | |
| ATTTGACGGTCTAATACCCT+TGG | - | chr4_4:2308683-2308702 | None:intergenic | 40.0% | |
| GATTCCGAAACTAAAGCTTC+TGG | - | chr4_4:2308727-2308746 | None:intergenic | 40.0% | |
| CGAAGGAAAGTTAGTAGCAT+TGG | + | chr4_4:2308826-2308845 | Msa0663440:CDS | 40.0% | |
| AAGACTTCTGTTGAATCCCA+TGG | + | chr4_4:2308916-2308935 | Msa0663440:CDS | 40.0% | |
| ! | ATTTTTCTTCCCAGCACCAT+GGG | - | chr4_4:2308935-2308954 | None:intergenic | 40.0% |
| ! | TATTTTTCTTCCCAGCACCA+TGG | - | chr4_4:2308936-2308955 | None:intergenic | 40.0% |
| AATGAGTTACCAAGGTCTTC+AGG | - | chr4_4:2309368-2309387 | None:intergenic | 40.0% | |
| ! | TGAAGACCTTGGTAACTCAT+TGG | + | chr4_4:2309367-2309386 | Msa0663440:CDS | 40.0% |
| TACCAACCAATGAGTTACCA+AGG | - | chr4_4:2309376-2309395 | None:intergenic | 40.0% | |
| TTGGTAAAAGGATCAAGGTC+TGG | + | chr4_4:2309390-2309409 | Msa0663440:CDS | 40.0% | |
| ! | GCCAAGTTGAAGTCTCTTAA+AGG | + | chr4_4:2309932-2309951 | Msa0663440:intron | 40.0% |
| AATGCAAACTCACCTGGATA+GGG | - | chr4_4:2309967-2309986 | None:intergenic | 40.0% | |
| !! | ACTTTAAAGCACCGACACAT+CGG | + | chr4_4:2310013-2310032 | Msa0663440:intron | 40.0% |
| CATATGTCAGTGTCACACAA+CGG | + | chr4_4:2310075-2310094 | Msa0663440:intron | 40.0% | |
| ! | ACACCTTCAATCTGAAGTGT+CGG | + | chr4_4:2310100-2310119 | Msa0663440:intron | 40.0% |
| TGCTGCACTAGTTAGTAAGT+GGG | + | chr4_4:2310123-2310142 | Msa0663440:intron | 40.0% | |
| TTGAGAGTCACTTCTACTAC+TGG | - | chr4_4:2310155-2310174 | None:intergenic | 40.0% | |
| GCAAACCTTATGGTTGAGTG+AGG | + | chr4_4:2305205-2305224 | Msa0663440:intron | 45.0% | |
| AACCTTATGGTTGAGTGAGG+TGG | + | chr4_4:2305208-2305227 | Msa0663440:intron | 45.0% | |
| TTCCACCTCACTCAACCATA+AGG | - | chr4_4:2305213-2305232 | None:intergenic | 45.0% | |
| ! | ACACCTTTGATCAGAGGTGT+TGG | - | chr4_4:2305249-2305268 | None:intergenic | 45.0% |
| !! | CCTCTGATCAAAGGTGTTTC+CGG | + | chr4_4:2305252-2305271 | Msa0663440:intron | 45.0% |
| CACATGTATCAGTGTCGTGT+CGG | - | chr4_4:2305281-2305300 | None:intergenic | 45.0% | |
| TGCTCAATGCCAATTTCGGT+GGG | + | chr4_4:2305401-2305420 | Msa0663440:intron | 45.0% | |
| CCAAACTAACCCACCGAAAT+TGG | - | chr4_4:2305413-2305432 | None:intergenic | 45.0% | |
| !! | CCAATTTCGGTGGGTTAGTT+TGG | + | chr4_4:2305410-2305429 | Msa0663440:intron | 45.0% |
| CTTATCCCACTAAGTGAGGT+CGG | - | chr4_4:2305510-2305529 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr4_4:2305514-2305533 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr4_4:2305513-2305532 | Msa0663440:intron | 45.0% | |
| ! | GATTCTTGAATTGGCTCAGG+TGG | - | chr4_4:2305816-2305835 | None:intergenic | 45.0% |
| CATCTCCGTTCACTGTTAAC+AGG | + | chr4_4:2306083-2306102 | Msa0663440:intron | 45.0% | |
| ACAAATACCAGACACGACAC+TGG | + | chr4_4:2306396-2306415 | Msa0663440:intron | 45.0% | |
| ACGACACATGTGGTTACCAA+TGG | - | chr4_4:2306464-2306483 | None:intergenic | 45.0% | |
| ! | CTTTTCTACAAGCTTGGGAC+CGG | - | chr4_4:2306648-2306667 | None:intergenic | 45.0% |
| TGCTCATAGGAAACATGTCG+TGG | + | chr4_4:2306763-2306782 | Msa0663440:intron | 45.0% | |
| CATGTCGTGGAAAAAAGCTC+TGG | + | chr4_4:2306776-2306795 | Msa0663440:intron | 45.0% | |
| ! | CTTTTCACACTAGGTGAGGT+TGG | - | chr4_4:2306821-2306840 | None:intergenic | 45.0% |
| CAACCTCACCTAGTGTGAAA+AGG | + | chr4_4:2306819-2306838 | Msa0663440:intron | 45.0% | |
| CACCTATGTCTTGGACTTTG+GGG | + | chr4_4:2307336-2307355 | Msa0663440:CDS | 45.0% | |
| ACCTATGTCTTGGACTTTGG+GGG | + | chr4_4:2307337-2307356 | Msa0663440:CDS | 45.0% | |
| CAGAGCTCTCAATGAGTATG+TGG | + | chr4_4:2307427-2307446 | Msa0663440:CDS | 45.0% | |
| TCCAGAACGTCATGATTCAG+TGG | + | chr4_4:2307487-2307506 | Msa0663440:CDS | 45.0% | |
| AGAACGTCATGATTCAGTGG+CGG | + | chr4_4:2307490-2307509 | Msa0663440:CDS | 45.0% | |
| ! | TGTTGCAATGCTTCAGGTTC+AGG | + | chr4_4:2307658-2307677 | Msa0663440:intron | 45.0% |
| !! | GGTTCTTCAGGAGCATCTTT+AGG | - | chr4_4:2307707-2307726 | None:intergenic | 45.0% |
| CGTCTTTCGGAGTTTGTAGT+TGG | - | chr4_4:2308022-2308041 | None:intergenic | 45.0% | |
| ACTGAACTCCAAAACTCAGC+TGG | + | chr4_4:2308090-2308109 | Msa0663440:CDS | 45.0% | |
| ! | CACAGTATCCAGCTGAGTTT+TGG | - | chr4_4:2308101-2308120 | None:intergenic | 45.0% |
| TCCTTAATGAATCCCGAGGA+AGG | + | chr4_4:2308148-2308167 | Msa0663440:CDS | 45.0% | |
| GAGTGATTATAGCCTTCCTC+GGG | - | chr4_4:2308163-2308182 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | + | chr4_4:2308298-2308317 | Msa0663440:CDS | 45.0% | |
| CTGGAAGAAGGGTTATCAGA+TGG | - | chr4_4:2308514-2308533 | None:intergenic | 45.0% | |
| TGACTGCGTCTTATCCTTTC+TGG | - | chr4_4:2308533-2308552 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | + | chr4_4:2308298-2308317 | Msa0663440:CDS | 45.0% | |
| TGCTACTAACTTTCCTTCGC+CGG | - | chr4_4:2308825-2308844 | None:intergenic | 45.0% | |
| ! | GGATTCTGAAGAGAGACATG+AGG | + | chr4_4:2308975-2308994 | Msa0663440:CDS | 45.0% |
| AGTTGCTAAGGTGGAATCTG+AGG | + | chr4_4:2309065-2309084 | Msa0663440:CDS | 45.0% | |
| GTAGAAAATAGAGCAGAGGG+AGG | + | chr4_4:2309135-2309154 | Msa0663440:CDS | 45.0% | |
| ! | GTCGACTTCTATTTGAGCTG+AGG | - | chr4_4:2309163-2309182 | None:intergenic | 45.0% |
| ! | GACCTTGGTAACTCATTGGT+TGG | + | chr4_4:2309371-2309390 | Msa0663440:CDS | 45.0% |
| GTAAAAGGATCAAGGTCTGG+TGG | + | chr4_4:2309393-2309412 | Msa0663440:CDS | 45.0% | |
| !! | ACTCTGGTCTTAGCTACACT+AGG | + | chr4_4:2309509-2309528 | Msa0663440:intron | 45.0% |
| ! | TCATGTCAACGGAAAGCACA+AGG | + | chr4_4:2309661-2309680 | Msa0663440:CDS | 45.0% |
| AGGTGAAAAGATCCCTATCC+AGG | + | chr4_4:2309952-2309971 | Msa0663440:intron | 45.0% | |
| GAATGCAAACTCACCTGGAT+AGG | - | chr4_4:2309968-2309987 | None:intergenic | 45.0% | |
| TGCATTCGAGGCAAGACATT+TGG | + | chr4_4:2309981-2310000 | Msa0663440:intron | 45.0% | |
| GCATTCGAGGCAAGACATTT+GGG | + | chr4_4:2309982-2310001 | Msa0663440:intron | 45.0% | |
| GTGCTGCACTAGTTAGTAAG+TGG | + | chr4_4:2310122-2310141 | Msa0663440:intron | 45.0% | |
| GTCACTTCTACTACTGGACT+CGG | - | chr4_4:2310149-2310168 | None:intergenic | 45.0% | |
| GCACCAACACCTCTGATCAA+AGG | + | chr4_4:2305243-2305262 | Msa0663440:intron | 50.0% | |
| CCGGAAACACCTTTGATCAG+AGG | - | chr4_4:2305255-2305274 | None:intergenic | 50.0% | |
| CAAGCTAACACCACAGACAC+CGG | - | chr4_4:2305339-2305358 | None:intergenic | 50.0% | |
| ! | GGTGTCTGTGGTGTTAGCTT+GGG | + | chr4_4:2305338-2305357 | Msa0663440:intron | 50.0% |
| CTTAGAGTGTGCTCCTCTCA+GGG | + | chr4_4:2305363-2305382 | Msa0663440:intron | 50.0% | |
| CTGCTCAATGCCAATTTCGG+TGG | + | chr4_4:2305400-2305419 | Msa0663440:intron | 50.0% | |
| ACTAAGTGAGGTCGGCTACA+TGG | - | chr4_4:2305502-2305521 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAG+TGG | + | chr4_4:2305501-2305520 | Msa0663440:intron | 50.0% | |
| TGTAGCCGACCTCACTTAGT+GGG | + | chr4_4:2305502-2305521 | Msa0663440:intron | 50.0% | |
| CGACCTCACTTAGTGGGATA+AGG | + | chr4_4:2305508-2305527 | Msa0663440:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | + | chr4_4:2305516-2305535 | Msa0663440:intron | 50.0% | |
| ACTTGTGTCAGTGTCCTGTC+CGG | + | chr4_4:2305561-2305580 | Msa0663440:intron | 50.0% | |
| ACCAACACAGACACGTACAC+CGG | - | chr4_4:2305583-2305602 | None:intergenic | 50.0% | |
| CAACCAGGTCATCACACTCA+AGG | - | chr4_4:2306233-2306252 | None:intergenic | 50.0% | |
| CATAGATGATCCGTGCCCTA+AGG | - | chr4_4:2306720-2306739 | None:intergenic | 50.0% | |
| ! | GAGCCTTTTCACACTAGGTG+AGG | - | chr4_4:2306825-2306844 | None:intergenic | 50.0% |
| TAAGGGCCTAAGTAGATCCG+AGG | - | chr4_4:2307191-2307210 | None:intergenic | 50.0% | |
| TCCCCCAAAGTCCAAGACAT+AGG | - | chr4_4:2307341-2307360 | None:intergenic | 50.0% | |
| GCCACTGAATCATGACGTTC+TGG | - | chr4_4:2307491-2307510 | None:intergenic | 50.0% | |
| GGTGACTACAGGGGTTGAAA+TGG | + | chr4_4:2307868-2307887 | Msa0663440:intron | 50.0% | |
| ! | ATCGTCGACTGTAGCTGCAT+TGG | - | chr4_4:2307954-2307973 | None:intergenic | 50.0% |
| TGGATACTGTGCCAAGGAAG+AGG | + | chr4_4:2308110-2308129 | Msa0663440:CDS | 50.0% | |
| GGATACTGTGCCAAGGAAGA+GGG | + | chr4_4:2308111-2308130 | Msa0663440:CDS | 50.0% | |
| GCCTTCCTCGGGATTCATTA+AGG | - | chr4_4:2308152-2308171 | None:intergenic | 50.0% | |
| AGAGCTTCACCGACAGTTTC+AGG | - | chr4_4:2308310-2308329 | None:intergenic | 50.0% | |
| GAAGCTCTACTAAACGACGC+CGG | + | chr4_4:2308803-2308822 | Msa0663440:CDS | 50.0% | |
| TCTGTTGAATCCCATGGTGC+TGG | + | chr4_4:2308922-2308941 | Msa0663440:CDS | 50.0% | |
| CTGTTGAATCCCATGGTGCT+GGG | + | chr4_4:2308923-2308942 | Msa0663440:CDS | 50.0% | |
| GCACATGAACCTGAAGACCT+TGG | + | chr4_4:2309356-2309375 | Msa0663440:CDS | 50.0% | |
| GTTGTACGACGACGATGTTG+AGG | + | chr4_4:2309685-2309704 | Msa0663440:CDS | 50.0% | |
| TCCAGGTGAGTTTGCATTCG+AGG | + | chr4_4:2309969-2309988 | Msa0663440:intron | 50.0% | |
| ! | GCACCGACACTTCAGATTGA+AGG | - | chr4_4:2310106-2310125 | None:intergenic | 50.0% |
| ATCAGTGTCGTGTCGGACAC+CGG | - | chr4_4:2305274-2305293 | None:intergenic | 55.0% | |
| ! | CGGTGTCTGTGGTGTTAGCT+TGG | + | chr4_4:2305337-2305356 | Msa0663440:intron | 55.0% |
| ! | CCTGAGAGGAGCACACTCTA+AGG | - | chr4_4:2305365-2305384 | None:intergenic | 55.0% |
| CCTTAGAGTGTGCTCCTCTC+AGG | + | chr4_4:2305362-2305381 | Msa0663440:intron | 55.0% | |
| TCCGGTGTACGTGTCTGTGT+TGG | + | chr4_4:2305579-2305598 | Msa0663440:intron | 55.0% | |
| GGACCTTGAGTGTGATGACC+TGG | + | chr4_4:2306227-2306246 | Msa0663440:CDS | 55.0% | |
| ACCAGACACGACACTGGCAT+TGG | + | chr4_4:2306402-2306421 | Msa0663440:intron | 55.0% | |
| ACCAATGCCAGTGTCGTGTC+TGG | - | chr4_4:2306406-2306425 | None:intergenic | 55.0% | |
| ! | ACTAGGTGAGGTTGGCTGCA+TGG | - | chr4_4:2306813-2306832 | None:intergenic | 55.0% |
| CTCATTGAGAGCTCTGCCTG+AGG | - | chr4_4:2307423-2307442 | None:intergenic | 55.0% | |
| CTCAGCTGGATACTGTGCCA+AGG | + | chr4_4:2308104-2308123 | Msa0663440:CDS | 55.0% | |
| GGAGCTTCACCGACAGTTTC+AGG | - | chr4_4:2308559-2308578 | None:intergenic | 55.0% | |
| GCCTCGAATGCAAACTCACC+TGG | - | chr4_4:2309973-2309992 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAGGGTCT+CGG | + | chr4_4:2305369-2305388 | Msa0663440:intron | 60.0% | |
| TGTGCTCCTCTCAGGGTCTC+GGG | + | chr4_4:2305370-2305389 | Msa0663440:intron | 60.0% | |
| GTCAAACCCGAGACCCTGAG+AGG | - | chr4_4:2305379-2305398 | None:intergenic | 60.0% | |
| CACAGACACGTACACCGGAC+AGG | - | chr4_4:2305578-2305597 | None:intergenic | 60.0% | |
| GGCTTACGTGCCCTCTTCCT+TGG | - | chr4_4:2308124-2308143 | None:intergenic | 60.0% | |
| CTACTAAACGACGCCGGCGA+AGG | + | chr4_4:2308809-2308828 | Msa0663440:CDS | 60.0% | |
| ! | GAGAGACATGAGGCACCCGT+TGG | + | chr4_4:2308985-2309004 | Msa0663440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2304849 | 2310578 | 2304849 | ID=Msa0663440;Name=Msa0663440 |
| chr4_4 | mRNA | 2304849 | 2310578 | 2304849 | ID=Msa0663440-mRNA-1;Parent=Msa0663440;Name=Msa0663440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=6|0.88|0.9|1|1|1|10|176|849 |
| chr4_4 | exon | 2304849 | 2304965 | 2304849 | ID=Msa0663440-mRNA-1:exon:611;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2305777 | 2305980 | 2305777 | ID=Msa0663440-mRNA-1:exon:612;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2306105 | 2306286 | 2306105 | ID=Msa0663440-mRNA-1:exon:613;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2307111 | 2307237 | 2307111 | ID=Msa0663440-mRNA-1:exon:614;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2307329 | 2307511 | 2307329 | ID=Msa0663440-mRNA-1:exon:615;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2307674 | 2307757 | 2307674 | ID=Msa0663440-mRNA-1:exon:616;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2307869 | 2309242 | 2307869 | ID=Msa0663440-mRNA-1:exon:617;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2309356 | 2309429 | 2309356 | ID=Msa0663440-mRNA-1:exon:618;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2309631 | 2309786 | 2309631 | ID=Msa0663440-mRNA-1:exon:619;Parent=Msa0663440-mRNA-1 |
| chr4_4 | exon | 2310348 | 2310578 | 2310348 | ID=Msa0663440-mRNA-1:exon:620;Parent=Msa0663440-mRNA-1 |
| chr4_4 | five_prime_UTR | 2304849 | 2304854 | 2304849 | ID=Msa0663440-mRNA-1:five_prime_utr;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2304855 | 2304965 | 2304855 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2305777 | 2305980 | 2305777 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2306105 | 2306286 | 2306105 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2307111 | 2307237 | 2307111 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2307329 | 2307511 | 2307329 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2307674 | 2307757 | 2307674 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2307869 | 2309242 | 2307869 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2309356 | 2309429 | 2309356 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2309631 | 2309786 | 2309631 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | CDS | 2310348 | 2310402 | 2310348 | ID=Msa0663440-mRNA-1:cds;Parent=Msa0663440-mRNA-1 |
| chr4_4 | three_prime_UTR | 2310403 | 2310578 | 2310403 | ID=Msa0663440-mRNA-1:three_prime_utr;Parent=Msa0663440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
