AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713570 MtrunA17_Chr5g0400431 99.398 166 1 0 1 166 1 166 1.08e-120 337
Msa0713570 MtrunA17_Chr4g0043711 59.880 167 54 3 1 166 1 155 2.23e-69 207
Msa0713570 MtrunA17_Chr7g0260591 66.038 53 16 1 64 114 3 55 9.13e-17 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713570 AT1G32470.1 83.133 166 28 0 1 166 1 166 4.86e-94 270
Msa0713570 AT2G35370.1 83.133 166 27 1 1 166 1 165 2.33e-89 258
Msa0713570 AT2G35120.1 58.929 168 55 3 1 166 1 156 1.58e-64 195

Find 56 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTAATTTCAATATA+TGG 0.157093 5_1:+5737401 Msa0713570:exon
ATACATCCAAGATAATATTT+TGG 0.203698 5_1:+5735917 Msa0713570:five_prime_UTR
GTAACTGAACCGCCAGGTTC+TGG 0.305688 5_1:-5736801 None:intergenic
TGAAATTAATTTCAATATAT+GGG 0.339204 5_1:+5737402 Msa0713570:exon
ATCATCCATCCATCTTCATA+TGG 0.339685 5_1:-5737288 None:intergenic
GTTACAAAGGGTAACGGTTT+CGG 0.348504 5_1:+5736819 Msa0713570:CDS
AAACATCTGGAGATGGAAAA+AGG 0.352185 5_1:-5736155 None:intergenic
TCAACAATCTCACCAGATAT+TGG 0.373303 5_1:-5736882 None:intergenic
ATCTCCAGATGTTTCTCAAC+TGG 0.379569 5_1:+5736164 Msa0713570:CDS
TCTTGGAGAGGTTGTGTTTG+TGG 0.407524 5_1:+5736773 Msa0713570:CDS
CGGAGCTGTTGAAAGTGTTA+AGG 0.409242 5_1:+5736839 Msa0713570:CDS
GATGTAAACTCTCCAATATC+TGG 0.410884 5_1:+5736870 Msa0713570:CDS
ATCTGAATTAGAAGCCTTGT+TGG 0.425384 5_1:+5737332 Msa0713570:CDS
AAAATATTATCTTGGATGTA+TGG 0.426151 5_1:-5735915 None:intergenic
AGTATGCATCTTCACATGAA+TGG 0.426720 5_1:+5736288 Msa0713570:CDS
TAACAATGGCACTGAGGATG+TGG 0.446358 5_1:+5736069 Msa0713570:exon
AGAAGAGAGTTTGAGAGCAT+TGG 0.453540 5_1:-5736105 None:intergenic
GATAAGCTCACCGGAAAACC+TGG 0.464278 5_1:+5736912 Msa0713570:CDS
TGTTGGTTGCAGGACCATCT+TGG 0.467787 5_1:+5736756 Msa0713570:intron
GAAGGCTCAGTAGCCACTAT+TGG 0.468590 5_1:+5736320 Msa0713570:CDS
TCTGAATTAGAAGCCTTGTT+GGG 0.485713 5_1:+5737333 Msa0713570:CDS
TCATCCATCCATCTTCATAT+GGG 0.487407 5_1:-5737287 None:intergenic
AATACCAGTTGAGAAACATC+TGG 0.490504 5_1:-5736168 None:intergenic
GTATGCATCTTCACATGAAT+GGG 0.495142 5_1:+5736289 Msa0713570:CDS
AGAAGCCTTGTTGGGTGCAA+AGG 0.506140 5_1:+5737341 Msa0713570:CDS
AATGAATGAATTACCAGGCC+AGG 0.510526 5_1:-5736930 None:intergenic
TTTGTGGAGCTTCCAGAACC+TGG 0.512073 5_1:+5736789 Msa0713570:CDS
TCTAATTCAGATGGATCACT+TGG 0.513292 5_1:-5737321 None:intergenic
TGAAATGATGAGATAGATAG+AGG 0.518200 5_1:-5735974 None:intergenic
TGGTATCACTGACCATGCTC+AGG 0.528384 5_1:+5736340 Msa0713570:CDS
GCTCACCGGAAAACCTGGCC+TGG 0.529026 5_1:+5736917 Msa0713570:CDS
AACTCAAGCCCATATGAAGA+TGG 0.530377 5_1:+5737279 Msa0713570:CDS
AGGGGAGAGATGTAATCTTG+AGG 0.555174 5_1:-5736132 None:intergenic
CATGAATGGGTGAAGCATGA+AGG 0.562003 5_1:+5736302 Msa0713570:CDS
CCCTTTGTAACTGAACCGCC+AGG 0.564034 5_1:-5736807 None:intergenic
CAAGCCCATATGAAGATGGA+TGG 0.567565 5_1:+5737283 Msa0713570:CDS
AACAAGGCTTCTAATTCAGA+TGG 0.567704 5_1:-5737330 None:intergenic
ACCTGGCGGTTCAGTTACAA+AGG 0.580268 5_1:+5736806 Msa0713570:CDS
AGTTGAGAAACATCTGGAGA+TGG 0.581853 5_1:-5736162 None:intergenic
GTTGCAGGACCATCTTGGAG+AGG 0.582318 5_1:+5736761 Msa0713570:intron
GGTTCAGTTACAAAGGGTAA+CGG 0.588941 5_1:+5736813 Msa0713570:CDS
CAAACACAACCTCTCCAAGA+TGG 0.593260 5_1:-5736770 None:intergenic
GAGGTTAATGATAAGCTCAC+CGG 0.595144 5_1:+5736903 Msa0713570:CDS
AATATCTGGTGAGATTGTTG+AGG 0.595757 5_1:+5736884 Msa0713570:CDS
AACAATGGCACTGAGGATGT+GGG 0.614850 5_1:+5736070 Msa0713570:exon
CCTGGCGGTTCAGTTACAAA+GGG 0.619186 5_1:+5736807 Msa0713570:CDS
TGTCGGTAACAATAATAGCA+AGG 0.624071 5_1:-5737512 None:intergenic
ATGGTCAGTGATACCAATAG+TGG 0.628719 5_1:-5736333 None:intergenic
GTACTCCTTTGCACCCAACA+AGG 0.634212 5_1:-5737346 None:intergenic
GTGTTGGTGTAAAGTAAAAG+AGG 0.635428 5_1:+5735852 None:intergenic
GAGTGCACAAATAAAAGATG+AGG 0.636975 5_1:+5735879 Msa0713570:five_prime_UTR
AGCAAAAGTAGTCTTAACAA+TGG 0.640990 5_1:+5736055 Msa0713570:exon
GCAGTTAACTAACCTGAGCA+TGG 0.648601 5_1:-5736352 None:intergenic
AGACTGACACACTAAAGTGT+CGG 0.671974 5_1:-5737529 None:intergenic
GTGGAGCTTCCAGAACCTGG+CGG 0.691995 5_1:+5736792 Msa0713570:CDS
TAGTCTTAACAATGGCACTG+AGG 0.723094 5_1:+5736063 Msa0713570:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTAATTTCAATATA+TGG + chr5_1:5737401-5737420 Msa0713570:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_1:5737402-5737421 Msa0713570:exon 10.0%
!! TTGAAATTAATTTCAATATA+TGG + chr5_1:5737401-5737420 Msa0713570:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_1:5737402-5737421 Msa0713570:exon 10.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_1:5735918-5735937 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_1:5735917-5735936 Msa0713570:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_1:5735918-5735937 Msa0713570:five_prime_UTR 20.0%
!!! TATATAAATTTTTGCAGTGT+TGG + chr5_1:5736256-5736275 Msa0713570:intron 20.0%
!!! TATTCGAATTAGTTTGTTTT+TGG + chr5_1:5736463-5736482 Msa0713570:intron 20.0%
!!! ATTCGAATTAGTTTGTTTTT+GGG + chr5_1:5736464-5736483 Msa0713570:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_1:5737097-5737116 Msa0713570:intron 20.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_1:5735918-5735937 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_1:5735917-5735936 Msa0713570:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_1:5735918-5735937 Msa0713570:five_prime_UTR 20.0%
!!! TATATAAATTTTTGCAGTGT+TGG + chr5_1:5736256-5736275 Msa0713570:intron 20.0%
!!! TATTCGAATTAGTTTGTTTT+TGG + chr5_1:5736463-5736482 Msa0713570:intron 20.0%
!!! ATTCGAATTAGTTTGTTTTT+GGG + chr5_1:5736464-5736483 Msa0713570:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_1:5737097-5737116 Msa0713570:intron 20.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_1:5735926-5735945 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_1:5735924-5735943 Msa0713570:five_prime_UTR 25.0%
! TTAGACTTTAATTACTGTCT+AGG + chr5_1:5736567-5736586 Msa0713570:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_1:5736667-5736686 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_1:5736708-5736727 Msa0713570:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_1:5736739-5736758 Msa0713570:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_1:5736950-5736969 Msa0713570:intron 25.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_1:5735926-5735945 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_1:5735924-5735943 Msa0713570:five_prime_UTR 25.0%
! TTAGACTTTAATTACTGTCT+AGG + chr5_1:5736567-5736586 Msa0713570:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_1:5736667-5736686 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_1:5736708-5736727 Msa0713570:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_1:5736739-5736758 Msa0713570:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_1:5736950-5736969 Msa0713570:intron 25.0%
TGAAATGATGAGATAGATAG+AGG - chr5_1:5735977-5735996 None:intergenic 30.0%
! AGCAAAAGTAGTCTTAACAA+TGG + chr5_1:5736055-5736074 Msa0713570:exon 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_1:5736210-5736229 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_1:5736260-5736279 Msa0713570:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_1:5736387-5736406 None:intergenic 30.0%
!!! GAATTAGTTTGTTTTTGGGT+CGG + chr5_1:5736468-5736487 Msa0713570:intron 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_1:5736620-5736639 Msa0713570:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_1:5736938-5736957 None:intergenic 30.0%
TGAAATGATGAGATAGATAG+AGG - chr5_1:5735977-5735996 None:intergenic 30.0%
! AGCAAAAGTAGTCTTAACAA+TGG + chr5_1:5736055-5736074 Msa0713570:exon 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_1:5736210-5736229 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_1:5736260-5736279 Msa0713570:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_1:5736387-5736406 None:intergenic 30.0%
!!! GAATTAGTTTGTTTTTGGGT+CGG + chr5_1:5736468-5736487 Msa0713570:intron 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_1:5736620-5736639 Msa0713570:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_1:5736938-5736957 None:intergenic 30.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_1:5735879-5735898 Msa0713570:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_1:5736158-5736177 None:intergenic 35.0%
AATACCAGTTGAGAAACATC+TGG - chr5_1:5736171-5736190 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_1:5736206-5736225 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_1:5736207-5736226 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_1:5736217-5736236 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_1:5736214-5736233 Msa0713570:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_1:5736288-5736307 Msa0713570:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_1:5736289-5736308 Msa0713570:CDS 35.0%
TATTGTGGAGAATGTTAAGG+AGG - chr5_1:5736384-5736403 None:intergenic 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_1:5736870-5736889 Msa0713570:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_1:5736885-5736904 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_1:5736884-5736903 Msa0713570:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_1:5737073-5737092 Msa0713570:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_1:5737074-5737093 Msa0713570:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_1:5737075-5737094 Msa0713570:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_1:5737290-5737309 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_1:5737291-5737310 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_1:5737324-5737343 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_1:5737333-5737352 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_1:5737332-5737351 Msa0713570:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_1:5737333-5737352 Msa0713570:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_1:5737362-5737381 Msa0713570:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_1:5737515-5737534 None:intergenic 35.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_1:5735879-5735898 Msa0713570:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_1:5736158-5736177 None:intergenic 35.0%
AATACCAGTTGAGAAACATC+TGG - chr5_1:5736171-5736190 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_1:5736206-5736225 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_1:5736207-5736226 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_1:5736217-5736236 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_1:5736214-5736233 Msa0713570:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_1:5736288-5736307 Msa0713570:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_1:5736289-5736308 Msa0713570:CDS 35.0%
TATTGTGGAGAATGTTAAGG+AGG - chr5_1:5736384-5736403 None:intergenic 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_1:5736870-5736889 Msa0713570:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_1:5736885-5736904 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_1:5736884-5736903 Msa0713570:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_1:5737073-5737092 Msa0713570:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_1:5737074-5737093 Msa0713570:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_1:5737075-5737094 Msa0713570:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_1:5737290-5737309 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_1:5737291-5737310 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_1:5737324-5737343 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_1:5737333-5737352 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_1:5737332-5737351 Msa0713570:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_1:5737333-5737352 Msa0713570:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_1:5737362-5737381 Msa0713570:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_1:5737515-5737534 None:intergenic 35.0%
! TAGTCTTAACAATGGCACTG+AGG + chr5_1:5736063-5736082 Msa0713570:exon 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_1:5736108-5736127 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_1:5736154-5736173 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_1:5736165-5736184 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_1:5736164-5736183 Msa0713570:CDS 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_1:5736336-5736355 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_1:5736439-5736458 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_1:5736440-5736459 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_1:5736441-5736460 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_1:5736746-5736765 Msa0713570:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_1:5736813-5736832 Msa0713570:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_1:5736819-5736838 Msa0713570:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_1:5736903-5736922 Msa0713570:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_1:5736933-5736952 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_1:5737279-5737298 Msa0713570:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG - chr5_1:5737532-5737551 None:intergenic 40.0%
! TAGTCTTAACAATGGCACTG+AGG + chr5_1:5736063-5736082 Msa0713570:exon 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_1:5736108-5736127 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_1:5736154-5736173 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_1:5736165-5736184 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_1:5736164-5736183 Msa0713570:CDS 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_1:5736336-5736355 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_1:5736439-5736458 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_1:5736440-5736459 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_1:5736441-5736460 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_1:5736746-5736765 Msa0713570:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_1:5736813-5736832 Msa0713570:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_1:5736819-5736838 Msa0713570:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_1:5736903-5736922 Msa0713570:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_1:5736933-5736952 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_1:5737279-5737298 Msa0713570:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG - chr5_1:5737532-5737551 None:intergenic 40.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_1:5736069-5736088 Msa0713570:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_1:5736070-5736089 Msa0713570:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_1:5736135-5736154 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_1:5736153-5736172 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_1:5736155-5736174 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_1:5736302-5736321 Msa0713570:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_1:5736355-5736374 None:intergenic 45.0%
TGGAGAATGTTAAGGAGGAG+AGG - chr5_1:5736379-5736398 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_1:5736399-5736418 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_1:5736412-5736431 Msa0713570:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_1:5736438-5736457 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_1:5736773-5736792 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_1:5736773-5736792 Msa0713570:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_1:5736839-5736858 Msa0713570:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_1:5736925-5736944 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_1:5737283-5737302 Msa0713570:CDS 45.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_1:5736069-5736088 Msa0713570:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_1:5736070-5736089 Msa0713570:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_1:5736135-5736154 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_1:5736153-5736172 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_1:5736155-5736174 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_1:5736302-5736321 Msa0713570:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_1:5736355-5736374 None:intergenic 45.0%
TGGAGAATGTTAAGGAGGAG+AGG - chr5_1:5736379-5736398 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_1:5736399-5736418 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_1:5736412-5736431 Msa0713570:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_1:5736438-5736457 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_1:5736773-5736792 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_1:5736773-5736792 Msa0713570:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_1:5736839-5736858 Msa0713570:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_1:5736925-5736944 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_1:5737283-5737302 Msa0713570:CDS 45.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_1:5736320-5736339 Msa0713570:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_1:5736340-5736359 Msa0713570:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_1:5736402-5736421 Msa0713570:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_1:5736410-5736429 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_1:5736756-5736775 Msa0713570:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_1:5736789-5736808 Msa0713570:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_1:5736806-5736825 Msa0713570:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_1:5736807-5736826 Msa0713570:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_1:5736912-5736931 Msa0713570:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_1:5737341-5737360 Msa0713570:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_1:5737349-5737368 None:intergenic 50.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_1:5736320-5736339 Msa0713570:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_1:5736340-5736359 Msa0713570:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_1:5736402-5736421 Msa0713570:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_1:5736410-5736429 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_1:5736756-5736775 Msa0713570:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_1:5736789-5736808 Msa0713570:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_1:5736806-5736825 Msa0713570:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_1:5736807-5736826 Msa0713570:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_1:5736912-5736931 Msa0713570:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_1:5737341-5737360 Msa0713570:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_1:5737349-5737368 None:intergenic 50.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_1:5736761-5736780 Msa0713570:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_1:5736804-5736823 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_1:5736810-5736829 None:intergenic 55.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_1:5736761-5736780 Msa0713570:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_1:5736804-5736823 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_1:5736810-5736829 None:intergenic 55.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_1:5736792-5736811 Msa0713570:CDS 60.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_1:5736792-5736811 Msa0713570:CDS 60.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_1:5736917-5736936 Msa0713570:CDS 65.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_1:5736917-5736936 Msa0713570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5735865 5737591 5735865 ID=Msa0713570;Name=Msa0713570
chr5_1 mRNA 5735865 5737591 5735865 ID=Msa0713570-mRNA-1;Parent=Msa0713570;Name=Msa0713570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=188|1|1|1|0.75|0.6|5|187|166
chr5_1 exon 5735865 5736013 5735865 ID=Msa0713570-mRNA-1:exon:2504;Parent=Msa0713570-mRNA-1
chr5_1 exon 5736035 5736185 5736035 ID=Msa0713570-mRNA-1:exon:2505;Parent=Msa0713570-mRNA-1
chr5_1 exon 5736273 5736361 5736273 ID=Msa0713570-mRNA-1:exon:2506;Parent=Msa0713570-mRNA-1
chr5_1 exon 5736768 5736938 5736768 ID=Msa0713570-mRNA-1:exon:2507;Parent=Msa0713570-mRNA-1
chr5_1 exon 5737276 5737591 5737276 ID=Msa0713570-mRNA-1:exon:2508;Parent=Msa0713570-mRNA-1
chr5_1 five_prime_UTR 5735865 5736013 5735865 ID=Msa0713570-mRNA-1:five_prime_utr;Parent=Msa0713570-mRNA-1
chr5_1 five_prime_UTR 5736035 5736073 5736035 ID=Msa0713570-mRNA-1:five_prime_utr;Parent=Msa0713570-mRNA-1
chr5_1 CDS 5736074 5736185 5736074 ID=Msa0713570-mRNA-1:cds;Parent=Msa0713570-mRNA-1
chr5_1 CDS 5736273 5736361 5736273 ID=Msa0713570-mRNA-1:cds;Parent=Msa0713570-mRNA-1
chr5_1 CDS 5736768 5736938 5736768 ID=Msa0713570-mRNA-1:cds;Parent=Msa0713570-mRNA-1
chr5_1 CDS 5737276 5737404 5737276 ID=Msa0713570-mRNA-1:cds;Parent=Msa0713570-mRNA-1
chr5_1 three_prime_UTR 5737405 5737591 5737405 ID=Msa0713570-mRNA-1:three_prime_utr;Parent=Msa0713570-mRNA-1
Gene Sequence

>Msa0713570

ATGGCACTGAGGATGTGGGCTTCTTCAACTGCCAATGCTCTCAAACTCTCTTCTTCTTCCTCAAGATTACATCTCTCCCCTCCTTTTTCCATCTCCAGATGTTTCTCAACTGTGTTGGATGGACTCAAGTATGCATCTTCACATGAATGGGTGAAGCATGAAGGCTCAGTAGCCACTATTGGTATCACTGACCATGCTCAGGACCATCTTGGAGAGGTTGTGTTTGTGGAGCTTCCAGAACCTGGCGGTTCAGTTACAAAGGGTAACGGTTTCGGAGCTGTTGAAAGTGTTAAGGCAACAAGTGATGTAAACTCTCCAATATCTGGTGAGATTGTTGAGGTTAATGATAAGCTCACCGGAAAACCTGGCCTGATCAACTCAAGCCCATATGAAGATGGATGGATGATCAAAATAAAGCCAAGTGATCCATCTGAATTAGAAGCCTTGTTGGGTGCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCTGCACATTGA

Protein sequence

>Msa0713570

MALRMWASSTANALKLSSSSSRLHLSPPFSISRCFSTVLDGLKYASSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGGSVTKGNGFGAVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELEALLGAKEYTKFCEEEDAAH*