AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0305630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305630 MtrunA17_Chr2g0333871 97.241 290 7 1 1 289 1 290 0.0 566
Msa0305630 MtrunA17_Chr4g0001421 76.109 293 66 2 1 289 1 293 2.87e-157 440
Msa0305630 MtrunA17_Chr1g0210741 62.264 212 80 0 78 289 69 280 1.33e-97 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305630 AT1G16880.1 71.053 266 71 3 29 289 26 290 2.66e-133 379
Msa0305630 AT5G04740.1 62.736 212 79 0 78 289 90 301 3.03e-99 293
Msa0305630 AT1G16880.2 65.476 168 52 3 29 191 26 192 4.19e-69 213
Msa0305630 AT5G04740.2 59.664 119 48 0 171 289 82 200 2.04e-48 160
Msa0305630 AT3G01990.3 24.348 230 142 4 54 276 1 205 3.43e-13 69.3
Msa0305630 AT3G01990.2 24.348 230 142 4 54 276 1 205 4.08e-13 68.9
Msa0305630 AT3G01990.4 24.348 230 142 4 54 276 1 205 4.12e-13 69.3
Msa0305630 AT3G01990.7 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0305630 AT3G01990.5 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0305630 AT3G01990.6 24.348 230 142 4 54 276 1 205 5.50e-13 69.3
Msa0305630 AT3G01990.8 25.373 201 118 4 83 276 16 191 7.82e-13 68.2
Msa0305630 AT3G01990.9 25.373 201 118 4 83 276 16 191 1.10e-12 67.8
Msa0305630 AT3G01990.11 25.373 201 118 4 83 276 16 191 1.20e-12 68.2
Msa0305630 AT3G01990.10 25.373 201 118 4 83 276 16 191 1.22e-12 68.2
Msa0305630 AT3G01990.1 25.373 201 118 4 83 276 16 191 1.22e-12 68.2

Find 83 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGATCGGCCTGGATTAT+TGG 0.254008 2_3:-63531212 Msa0305630:CDS
CACAATATTGGCAATGCATT+TGG 0.274897 2_3:-63530614 Msa0305630:three_prime_UTR
TTGTAAAATGTAGGGGCTTT+TGG 0.296400 2_3:-63531005 Msa0305630:intron
AAGCTGCTCCTAGAGCTAAT+TGG 0.307671 2_3:+63531509 None:intergenic
TTAGCTCTAGGAGCAGCTTT+TGG 0.320063 2_3:-63531505 Msa0305630:CDS
TGACTAGTAAATTTACAATA+TGG 0.326894 2_3:+63530506 None:intergenic
GAATTCATCACCTGCTCCTT+TGG 0.338089 2_3:+63531472 None:intergenic
GCTATGGCTGCTTGCAGTCT+TGG 0.340320 2_3:-63533146 Msa0305630:CDS
TAATAACTTCTTCAGACCTT+TGG 0.343676 2_3:-63533105 Msa0305630:CDS
GAATATAATAACCACAATAT+TGG 0.357966 2_3:-63530626 Msa0305630:three_prime_UTR
AAGAGTTGAAGGATTTGAAA+AGG 0.370883 2_3:+63533184 None:intergenic
ATTAACATTGCTGTTGAATC+TGG 0.377217 2_3:-63531163 Msa0305630:CDS
AACTTTGATTGCAGTGATAC+AGG 0.390474 2_3:-63531713 Msa0305630:intron
CTTGGGACTGAATGTTGTTA+AGG 0.403190 2_3:-63531882 Msa0305630:CDS
TACCTGCTGGAGAGGCTTGA+TGG 0.411055 2_3:+63530943 None:intergenic
AGTGGAATGTACTCCAGCTT+TGG 0.411870 2_3:+63530566 None:intergenic
AGCTGCTCCTAGAGCTAATT+GGG 0.415623 2_3:+63531510 None:intergenic
ACTCAATCAACAAATACAAT+TGG 0.416063 2_3:-63530546 Msa0305630:three_prime_UTR
TCTTGATCAATTATAACTAT+AGG 0.425614 2_3:+63532305 None:intergenic
TGTTAAGGCAAGCGTGTGTC+TGG 0.436304 2_3:-63531867 Msa0305630:CDS
GTGCTGCAGTTTGCTGTATG+TGG 0.438056 2_3:-63531239 Msa0305630:intron
GTGGAATGTACTCCAGCTTT+GGG 0.438611 2_3:+63530567 None:intergenic
AGCGTGTGTCTGGACTCTTC+TGG 0.440301 2_3:-63531857 Msa0305630:CDS
CAAGATGGAGGCACTGCAAA+TGG 0.440972 2_3:+63533076 None:intergenic
AAACTGGATTCCTCAGTTGT+AGG 0.450441 2_3:+63530695 None:intergenic
TCAATTATAACTATAGGTGT+TGG 0.463115 2_3:+63532311 None:intergenic
GGAAGATCCAGAGTTGTTAG+AGG 0.470609 2_3:-63531681 Msa0305630:CDS
TTCATCACCTGCTCCTTTGG+AGG 0.471072 2_3:+63531475 None:intergenic
ATCTCGACGACAGTTGCATC+AGG 0.471096 2_3:+63532275 None:intergenic
TGGATAGGAGCAGATAAAAC+TGG 0.481054 2_3:+63533449 None:intergenic
CCATCCTTGTTATGTTGGAT+AGG 0.484435 2_3:+63533434 None:intergenic
ACTGTCGTCGAGATTACCTT+TGG 0.487221 2_3:-63532266 Msa0305630:CDS
CAATTATAACTATAGGTGTT+GGG 0.488838 2_3:+63532312 None:intergenic
ATTACCTTTGGTGATCGCCT+TGG 0.489910 2_3:-63532254 Msa0305630:CDS
CTTCTTGCTTTGCACTTCCA+CGG 0.496175 2_3:-63530479 Msa0305630:three_prime_UTR
CATCATCGGTGATTGTTAAG+TGG 0.498493 2_3:+63531363 None:intergenic
TGTTATTTAAAATTGTCAAA+CGG 0.499007 2_3:+63531654 None:intergenic
GAATATTGTTAGCCCAAAGC+TGG 0.501276 2_3:-63530579 Msa0305630:three_prime_UTR
CGGATTGCCTCTAACAACTC+TGG 0.505539 2_3:+63531674 None:intergenic
CCATACCATCCTTGTTATGT+TGG 0.506105 2_3:+63533429 None:intergenic
CACCATCAAGCCTCTCCAGC+AGG 0.507273 2_3:-63530945 Msa0305630:intron
AAAGATCACCACCTTCTGTC+AGG 0.509139 2_3:+63531338 None:intergenic
GTGGAGACAGCTGATCGGCC+TGG 0.511021 2_3:-63531220 Msa0305630:CDS
CATAGAAGTGGTCTTCAAGA+TGG 0.513424 2_3:+63533061 None:intergenic
AATATTGGCAATGCATTTGG+AGG 0.514705 2_3:-63530611 Msa0305630:three_prime_UTR
CACTTAACAATCACCGATGA+TGG 0.515391 2_3:-63531362 Msa0305630:CDS
CCAACATAACAAGGATGGTA+TGG 0.517017 2_3:-63533429 Msa0305630:five_prime_UTR
AATTGTATTTGTTGATTGAG+TGG 0.528191 2_3:+63530548 None:intergenic
CATATCATCAAGATTAGAAG+TGG 0.537255 2_3:-63533339 Msa0305630:five_prime_UTR
ACAAGATCAACCAATAATCC+AGG 0.541856 2_3:+63531202 None:intergenic
TAGTGCTTACGCCTTTGTGA+TGG 0.543958 2_3:+63531817 None:intergenic
ATCATCGGTGATTGTTAAGT+GGG 0.544912 2_3:+63531364 None:intergenic
GGAGAACAGGATGGAAATCA+AGG 0.557287 2_3:-63532350 Msa0305630:intron
CAGTGATACAGGTAGAAAAG+TGG 0.558460 2_3:-63531702 Msa0305630:CDS
AGATAGCATGGAGATATATG+AGG 0.559451 2_3:+63533251 None:intergenic
CAAATGCATTGCCAATATTG+TGG 0.560302 2_3:+63530615 None:intergenic
TCAAGTGCCCAATTAGCTCT+AGG 0.563523 2_3:-63531517 Msa0305630:CDS
ACTTATGCCTCCAAAGGAGC+AGG 0.565012 2_3:-63531482 Msa0305630:intron
AAGTTTCATGTCAGCTACAA+TGG 0.567439 2_3:-63530974 Msa0305630:CDS
AAAGAATAATAAAGTGAGGA+GGG 0.572709 2_3:-63533473 None:intergenic
CAACCAATTACCTGCTGGAG+AGG 0.574118 2_3:+63530935 None:intergenic
AGCACCAAGGCGATCACCAA+AGG 0.576324 2_3:+63532250 None:intergenic
AAAAGAATAATAAAGTGAGG+AGG 0.576639 2_3:-63533474 None:intergenic
CCGATGATGGTCCTGACAGA+AGG 0.584356 2_3:-63531349 Msa0305630:intron
ACATGGCTTAGCAGATAGCA+TGG 0.585602 2_3:+63533239 None:intergenic
CCTATCCAACATAACAAGGA+TGG 0.592199 2_3:-63533434 Msa0305630:five_prime_UTR
ACTAGTATCATACATAGAAG+TGG 0.592687 2_3:+63533049 None:intergenic
CAGAAACAGCTGTTGCTCGA+GGG 0.594027 2_3:+63532466 None:intergenic
CCTTCTGTCAGGACCATCAT+CGG 0.595720 2_3:+63531349 None:intergenic
ATACCAATTTCAGCTTGATG+TGG 0.598739 2_3:-63531396 Msa0305630:intron
AATAAAAGAATAATAAAGTG+AGG 0.599286 2_3:-63533477 None:intergenic
TGCTCCTATCCAACATAACA+AGG 0.599487 2_3:-63533438 Msa0305630:five_prime_UTR
ATAAAATATGAATAAAGCCG+TGG 0.603487 2_3:+63530462 None:intergenic
TCAGAAACAGCTGTTGCTCG+AGG 0.604318 2_3:+63532465 None:intergenic
CTGCTGGAGAGGCTTGATGG+TGG 0.611190 2_3:+63530946 None:intergenic
TCGAGCAACAGCTGTTTCTG+AGG 0.612198 2_3:-63532463 Msa0305630:intron
CTTGACTCGTCCTACAACTG+AGG 0.628347 2_3:-63530705 Msa0305630:CDS
GTTCAATGAGACAGAAGACA+TGG 0.645717 2_3:+63533222 None:intergenic
AGAAGTGGTCTTCAAGATGG+AGG 0.666392 2_3:+63533064 None:intergenic
TAACATGATCACATATCACC+CGG 0.672020 2_3:-63531636 Msa0305630:intron
TGTATGTGGAGACAGCTGAT+CGG 0.701675 2_3:-63531225 Msa0305630:CDS
CGGTGTCAAGAAGAGCACCA+AGG 0.710369 2_3:+63532237 None:intergenic
ATCTGGTGAATTTGACACTG+AGG 0.742158 2_3:-63531146 Msa0305630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATATATATTCAACT+TGG - chr2_3:63531307-63531326 Msa0305630:intron 15.0%
!! GATTAATATATATTCAACTT+GGG - chr2_3:63531308-63531327 Msa0305630:intron 15.0%
!! ATAAACTTAAATCAAGAAAA+TGG - chr2_3:63531954-63531973 Msa0305630:intron 15.0%
!!! TGTTATTTAAAATTGTCAAA+CGG + chr2_3:63532243-63532262 None:intergenic 15.0%
!! TACAATTAATTGTTACATTT+GGG + chr2_3:63532804-63532823 None:intergenic 15.0%
!! ATACAATTAATTGTTACATT+TGG + chr2_3:63532805-63532824 None:intergenic 15.0%
!!! TTAATTTGTTGTAAAATGTA+GGG - chr2_3:63532881-63532900 Msa0305630:intron 15.0%
!! TTATTTAGACATACAAAAGT+CGG - chr2_3:63531084-63531103 Msa0305630:intron 20.0%
!! TTAGAAACTATTGTTGATAT+CGG - chr2_3:63531188-63531207 Msa0305630:CDS 20.0%
!!! TTAGGTATATACTTGTTAAT+TGG - chr2_3:63531236-63531255 Msa0305630:intron 20.0%
!!! TAGGTATATACTTGTTAATT+GGG - chr2_3:63531237-63531256 Msa0305630:intron 20.0%
!! TACATACAATTAACACAAAA+TGG + chr2_3:63531369-63531388 None:intergenic 20.0%
!! TCTTGATCAATTATAACTAT+AGG + chr2_3:63531592-63531611 None:intergenic 20.0%
!! ACAATTAATTGTTACATTTG+GGG + chr2_3:63532803-63532822 None:intergenic 20.0%
!!! CTTAATTTGTTGTAAAATGT+AGG - chr2_3:63532880-63532899 Msa0305630:intron 20.0%
!!! TAATTTGTTGTAAAATGTAG+GGG - chr2_3:63532882-63532901 Msa0305630:intron 20.0%
!! TATAGAAGACTTAGTTTATT+AGG - chr2_3:63533031-63533050 Msa0305630:CDS 20.0%
!! TTCTGATAACATGTAAATTA+AGG + chr2_3:63533075-63533094 None:intergenic 20.0%
!!! AAATGAAACTTGATTAGTTT+CGG - chr2_3:63533094-63533113 Msa0305630:CDS 20.0%
!! GAATATAATAACCACAATAT+TGG - chr2_3:63533268-63533287 Msa0305630:five_prime_UTR 20.0%
!! TGACTAGTAAATTTACAATA+TGG + chr2_3:63533391-63533410 None:intergenic 20.0%
!! AAAAACTAGGTAAGTACTTT+TGG - chr2_3:63530888-63530907 Msa0305630:intron 25.0%
!! TTACTATTCAGTCTTTTTGT+TGG - chr2_3:63531037-63531056 Msa0305630:intron 25.0%
! TGGACTATATTTAGATATAG+AGG - chr2_3:63531057-63531076 Msa0305630:intron 25.0%
! AACACGTATAAAATACAACT+AGG - chr2_3:63531114-63531133 Msa0305630:intron 25.0%
! TACCTAACATAAATGTTTCT+CGG + chr2_3:63531223-63531242 None:intergenic 25.0%
! AAGATGATAATCTGAGAAAA+TGG + chr2_3:63531392-63531411 None:intergenic 25.0%
! CAATTATAACTATAGGTGTT+GGG + chr2_3:63531585-63531604 None:intergenic 25.0%
! TCAATTATAACTATAGGTGT+TGG + chr2_3:63531586-63531605 None:intergenic 25.0%
! ATTTCTCTCAACAAATCAAT+TGG - chr2_3:63531685-63531704 Msa0305630:CDS 25.0%
! ACAGTGATGTATAAAAAAGA+TGG + chr2_3:63531715-63531734 None:intergenic 25.0%
! ATGAATGCATTGAAAAACTT+GGG - chr2_3:63531995-63532014 Msa0305630:intron 25.0%
!! TATTGTACATGTTCGTTTTA+TGG - chr2_3:63532108-63532127 Msa0305630:intron 25.0%
! AGAATCTGCAGTAATTTATT+TGG - chr2_3:63532146-63532165 Msa0305630:intron 25.0%
!!! TGTTTTCAAACTGGTTTTAA+AGG - chr2_3:63532352-63532371 Msa0305630:intron 25.0%
!!! TGTTAATTTGTTGGATGAAT+TGG - chr2_3:63532994-63533013 Msa0305630:intron 25.0%
!!! CAACACATTTTATTTGCTTT+GGG - chr2_3:63533246-63533265 Msa0305630:five_prime_UTR 25.0%
!! AATTGTATTTGTTGATTGAG+TGG + chr2_3:63533349-63533368 None:intergenic 25.0%
! ACTCAATCAACAAATACAAT+TGG - chr2_3:63533348-63533367 Msa0305630:five_prime_UTR 25.0%
! ATAAAATATGAATAAAGCCG+TGG + chr2_3:63533435-63533454 None:intergenic 25.0%
TAATTAAAAAGTGACGCGTT+TGG + chr2_3:63530523-63530542 None:intergenic 30.0%
CATATCATCAAGATTAGAAG+TGG - chr2_3:63530555-63530574 Msa0305630:three_prime_UTR 30.0%
AAGAGTTGAAGGATTTGAAA+AGG + chr2_3:63530713-63530732 None:intergenic 30.0%
! TCCTTCAACTCTTTGAAAAA+TGG - chr2_3:63530720-63530739 Msa0305630:CDS 30.0%
TAATAACTTCTTCAGACCTT+TGG - chr2_3:63530789-63530808 Msa0305630:intron 30.0%
ACTAGTATCATACATAGAAG+TGG + chr2_3:63530848-63530867 None:intergenic 30.0%
CTTTCAGTCTTCAAAAAACT+AGG - chr2_3:63530875-63530894 Msa0305630:intron 30.0%
TAAGTAATGTGTCTATCACT+TGG - chr2_3:63530970-63530989 Msa0305630:CDS 30.0%
TTTGTTGAGAGAAATGCTTA+CGG + chr2_3:63531680-63531699 None:intergenic 30.0%
!! TTTAAAAAAGCGTTGAGATG+TGG - chr2_3:63531925-63531944 Msa0305630:intron 30.0%
GATGAATGCATTGAAAAACT+TGG - chr2_3:63531994-63532013 Msa0305630:intron 30.0%
AACGAACATGTACAATACAA+GGG + chr2_3:63532105-63532124 None:intergenic 30.0%
AAACGAACATGTACAATACA+AGG + chr2_3:63532106-63532125 None:intergenic 30.0%
AAATCATGCTACAAAGTAGT+AGG + chr2_3:63532304-63532323 None:intergenic 30.0%
! AGAGTTACATGTTTTCAAAC+TGG - chr2_3:63532343-63532362 Msa0305630:CDS 30.0%
! TAGCTAGAACATGTTACTTA+AGG + chr2_3:63532614-63532633 None:intergenic 30.0%
! CTAGCTACTAATTCTGTTTT+TGG - chr2_3:63532627-63532646 Msa0305630:intron 30.0%
! ATTAACATTGCTGTTGAATC+TGG - chr2_3:63532731-63532750 Msa0305630:intron 30.0%
!! GCAACACATTTTATTTGCTT+TGG - chr2_3:63533245-63533264 Msa0305630:five_prime_UTR 30.0%
AGATAGCATGGAGATATATG+AGG + chr2_3:63530646-63530665 None:intergenic 35.0%
!!! GCCATTTTTCAAAGAGTTGA+AGG + chr2_3:63530724-63530743 None:intergenic 35.0%
! AACTCTTTGAAAAATGGCTG+TGG - chr2_3:63530726-63530745 Msa0305630:CDS 35.0%
!! CTGCAAATGGATTTTTCCAA+AGG + chr2_3:63530808-63530827 None:intergenic 35.0%
AAATACAACTAGGACGTGTT+TGG - chr2_3:63531124-63531143 Msa0305630:intron 35.0%
GTCCGAGAAACATTTATGTT+AGG - chr2_3:63531218-63531237 Msa0305630:CDS 35.0%
CAAAATGGACACTTCATTTG+AGG + chr2_3:63531354-63531373 None:intergenic 35.0%
CGAGAGTTAAAAGGAAATGT+TGG + chr2_3:63531521-63531540 None:intergenic 35.0%
!! ATTTCCTTTTAACTCTCGTG+TGG - chr2_3:63531523-63531542 Msa0305630:CDS 35.0%
TACGCATTGAATTGAAGTGT+CGG + chr2_3:63531744-63531763 None:intergenic 35.0%
ATAGACTGAAACTGACACAT+TGG + chr2_3:63531775-63531794 None:intergenic 35.0%
! CAACAAGTTTTCCATCACAA+AGG - chr2_3:63532066-63532085 Msa0305630:intron 35.0%
AATTTATTTGGAGATGCGTG+TGG - chr2_3:63532158-63532177 Msa0305630:intron 35.0%
AACTTTGATTGCAGTGATAC+AGG - chr2_3:63532181-63532200 Msa0305630:intron 35.0%
TAACATGATCACATATCACC+CGG - chr2_3:63532258-63532277 Msa0305630:CDS 35.0%
ATACCAATTTCAGCTTGATG+TGG - chr2_3:63532498-63532517 Msa0305630:intron 35.0%
ATCATCGGTGATTGTTAAGT+GGG + chr2_3:63532533-63532552 None:intergenic 35.0%
ACAAGATCAACCAATAATCC+AGG + chr2_3:63532695-63532714 None:intergenic 35.0%
!! CATTTGGGGCATGAATATTT+TGG + chr2_3:63532789-63532808 None:intergenic 35.0%
! TTGTAAAATGTAGGGGCTTT+TGG - chr2_3:63532889-63532908 Msa0305630:intron 35.0%
AAGTTTCATGTCAGCTACAA+TGG - chr2_3:63532920-63532939 Msa0305630:intron 35.0%
!! CATGCTGCATGTTAATTTGT+TGG - chr2_3:63532985-63533004 Msa0305630:intron 35.0%
AAAATGCATGTGTACCTATC+TGG - chr2_3:63533137-63533156 Msa0305630:CDS 35.0%
ACAATTTGCCACTCAAAAAC+TGG + chr2_3:63533218-63533237 None:intergenic 35.0%
CAAATGCATTGCCAATATTG+TGG + chr2_3:63533282-63533301 None:intergenic 35.0%
CACAATATTGGCAATGCATT+TGG - chr2_3:63533280-63533299 Msa0305630:five_prime_UTR 35.0%
AATATTGGCAATGCATTTGG+AGG - chr2_3:63533283-63533302 Msa0305630:five_prime_UTR 35.0%
TGGATAGGAGCAGATAAAAC+TGG + chr2_3:63530448-63530467 None:intergenic 40.0%
TGCTCCTATCCAACATAACA+AGG - chr2_3:63530456-63530475 Msa0305630:three_prime_UTR 40.0%
! CCATCCTTGTTATGTTGGAT+AGG + chr2_3:63530463-63530482 None:intergenic 40.0%
CCTATCCAACATAACAAGGA+TGG - chr2_3:63530460-63530479 Msa0305630:three_prime_UTR 40.0%
! CCATACCATCCTTGTTATGT+TGG + chr2_3:63530468-63530487 None:intergenic 40.0%
CCAACATAACAAGGATGGTA+TGG - chr2_3:63530465-63530484 Msa0305630:three_prime_UTR 40.0%
TTAAAAAGTGACGCGTTTGG+TGG + chr2_3:63530520-63530539 None:intergenic 40.0%
GTTCAATGAGACAGAAGACA+TGG + chr2_3:63530675-63530694 None:intergenic 40.0%
TTGAAAAATGGCTGTGGCTA+TGG - chr2_3:63530732-63530751 Msa0305630:CDS 40.0%
CATAGAAGTGGTCTTCAAGA+TGG + chr2_3:63530836-63530855 None:intergenic 40.0%
GAATCAGCAACTTTAAGCAG+AGG + chr2_3:63530998-63531017 None:intergenic 40.0%
!! CTGCTTAAAGTTGCTGATTC+TGG - chr2_3:63530998-63531017 Msa0305630:intron 40.0%
TTGTTAATTGGGCTGATCGA+AGG - chr2_3:63531248-63531267 Msa0305630:intron 40.0%
!! ACAGCTGTTTCTGAGGTATT+TGG - chr2_3:63531438-63531457 Msa0305630:intron 40.0%
TTCTCCACACGAGAGTTAAA+AGG + chr2_3:63531530-63531549 None:intergenic 40.0%
CTTGGGACTGAATGTTGTTA+AGG - chr2_3:63532012-63532031 Msa0305630:intron 40.0%
CAGTGATACAGGTAGAAAAG+TGG - chr2_3:63532192-63532211 Msa0305630:intron 40.0%
! TTTTGGACTTATGCCTCCAA+AGG - chr2_3:63532406-63532425 Msa0305630:intron 40.0%
TGTCCACATCAAGCTGAAAT+TGG + chr2_3:63532504-63532523 None:intergenic 40.0%
CATCATCGGTGATTGTTAAG+TGG + chr2_3:63532534-63532553 None:intergenic 40.0%
CACTTAACAATCACCGATGA+TGG - chr2_3:63532532-63532551 Msa0305630:intron 40.0%
ATCTGGTGAATTTGACACTG+AGG - chr2_3:63532748-63532767 Msa0305630:intron 40.0%
TTAACAAGAACCTGCCAGAT+AGG + chr2_3:63533154-63533173 None:intergenic 40.0%
AAACTGGATTCCTCAGTTGT+AGG + chr2_3:63533202-63533221 None:intergenic 40.0%
!! TGAGGAATCCAGTTTTTGAG+TGG - chr2_3:63533207-63533226 Msa0305630:five_prime_UTR 40.0%
GAATATTGTTAGCCCAAAGC+TGG - chr2_3:63533315-63533334 Msa0305630:five_prime_UTR 40.0%
ACATGGCTTAGCAGATAGCA+TGG + chr2_3:63530658-63530677 None:intergenic 45.0%
AGAAGTGGTCTTCAAGATGG+AGG + chr2_3:63530833-63530852 None:intergenic 45.0%
!! CGTGTTTGGTGTTAGAAACG+AGG - chr2_3:63531138-63531157 Msa0305630:intron 45.0%
TTAACTCTCGTGTGGAGAAC+AGG - chr2_3:63531531-63531550 Msa0305630:intron 45.0%
GGAGAACAGGATGGAAATCA+AGG - chr2_3:63531544-63531563 Msa0305630:intron 45.0%
ACTGTCGTCGAGATTACCTT+TGG - chr2_3:63531628-63531647 Msa0305630:intron 45.0%
! ATTACCTTTGGTGATCGCCT+TGG - chr2_3:63531640-63531659 Msa0305630:CDS 45.0%
TAGTGCTTACGCCTTTGTGA+TGG + chr2_3:63532080-63532099 None:intergenic 45.0%
GGAAGATCCAGAGTTGTTAG+AGG - chr2_3:63532213-63532232 Msa0305630:intron 45.0%
! AACTGAGAAGCATAGGTACC+GGG + chr2_3:63532279-63532298 None:intergenic 45.0%
! CAACTGAGAAGCATAGGTAC+CGG + chr2_3:63532280-63532299 None:intergenic 45.0%
! GTAGGACAACTGAGAAGCAT+AGG + chr2_3:63532286-63532305 None:intergenic 45.0%
! TCAAGTGCCCAATTAGCTCT+AGG - chr2_3:63532377-63532396 Msa0305630:intron 45.0%
AGCTGCTCCTAGAGCTAATT+GGG + chr2_3:63532387-63532406 None:intergenic 45.0%
AAGCTGCTCCTAGAGCTAAT+TGG + chr2_3:63532388-63532407 None:intergenic 45.0%
!!! TTAGCTCTAGGAGCAGCTTT+TGG - chr2_3:63532389-63532408 Msa0305630:intron 45.0%
GAATTCATCACCTGCTCCTT+TGG + chr2_3:63532425-63532444 None:intergenic 45.0%
AAAGATCACCACCTTCTGTC+AGG + chr2_3:63532559-63532578 None:intergenic 45.0%
TGTATGTGGAGACAGCTGAT+CGG - chr2_3:63532669-63532688 Msa0305630:intron 45.0%
!! AATGTAGGGGCTTTTGGCTA+AGG - chr2_3:63532895-63532914 Msa0305630:intron 45.0%
TGCATCAACCAATTACCTGC+TGG + chr2_3:63532967-63532986 None:intergenic 45.0%
GTGGAATGTACTCCAGCTTT+GGG + chr2_3:63533330-63533349 None:intergenic 45.0%
AGTGGAATGTACTCCAGCTT+TGG + chr2_3:63533331-63533350 None:intergenic 45.0%
CTTCTTGCTTTGCACTTCCA+CGG - chr2_3:63533415-63533434 Msa0305630:five_prime_UTR 45.0%
!! CAAGATGGAGGCACTGCAAA+TGG + chr2_3:63530821-63530840 None:intergenic 50.0%
CAACTTGGGAAGTGACTGCT+TGG - chr2_3:63531322-63531341 Msa0305630:intron 50.0%
CAGAAACAGCTGTTGCTCGA+GGG + chr2_3:63531431-63531450 None:intergenic 50.0%
TCAGAAACAGCTGTTGCTCG+AGG + chr2_3:63531432-63531451 None:intergenic 50.0%
!! TCGAGCAACAGCTGTTTCTG+AGG - chr2_3:63531431-63531450 Msa0305630:intron 50.0%
ATCTCGACGACAGTTGCATC+AGG + chr2_3:63531622-63531641 None:intergenic 50.0%
TGTTAAGGCAAGCGTGTGTC+TGG - chr2_3:63532027-63532046 Msa0305630:intron 50.0%
CGGATTGCCTCTAACAACTC+TGG + chr2_3:63532223-63532242 None:intergenic 50.0%
ACTTATGCCTCCAAAGGAGC+AGG - chr2_3:63532412-63532431 Msa0305630:intron 50.0%
TTCATCACCTGCTCCTTTGG+AGG + chr2_3:63532422-63532441 None:intergenic 50.0%
CCTTCTGTCAGGACCATCAT+CGG + chr2_3:63532548-63532567 None:intergenic 50.0%
ATGATGGTCCTGACAGAAGG+TGG - chr2_3:63532548-63532567 Msa0305630:intron 50.0%
!! GTGCTGCAGTTTGCTGTATG+TGG - chr2_3:63532655-63532674 Msa0305630:intron 50.0%
AGCTGATCGGCCTGGATTAT+TGG - chr2_3:63532682-63532701 Msa0305630:intron 50.0%
AAGCCTCTCCAGCAGGTAAT+TGG - chr2_3:63532956-63532975 Msa0305630:intron 50.0%
CAACCAATTACCTGCTGGAG+AGG + chr2_3:63532962-63532981 None:intergenic 50.0%
TGCATGTGTACCTATCTGGC+AGG - chr2_3:63533141-63533160 Msa0305630:CDS 50.0%
! CTTGACTCGTCCTACAACTG+AGG - chr2_3:63533189-63533208 Msa0305630:five_prime_UTR 50.0%
GCTATGGCTGCTTGCAGTCT+TGG - chr2_3:63530748-63530767 Msa0305630:intron 55.0%
CTCTCGTGTGGAGAACAGGA+TGG - chr2_3:63531535-63531554 Msa0305630:intron 55.0%
AGCACCAAGGCGATCACCAA+AGG + chr2_3:63531647-63531666 None:intergenic 55.0%
!! CGGTGTCAAGAAGAGCACCA+AGG + chr2_3:63531660-63531679 None:intergenic 55.0%
AGCGTGTGTCTGGACTCTTC+TGG - chr2_3:63532037-63532056 Msa0305630:intron 55.0%
! CCGATGATGGTCCTGACAGA+AGG - chr2_3:63532545-63532564 Msa0305630:intron 55.0%
TACCTGCTGGAGAGGCTTGA+TGG + chr2_3:63532954-63532973 None:intergenic 55.0%
CTGCTGGAGAGGCTTGATGG+TGG + chr2_3:63532951-63532970 None:intergenic 60.0%
CACCATCAAGCCTCTCCAGC+AGG - chr2_3:63532949-63532968 Msa0305630:intron 60.0%
GTGGAGACAGCTGATCGGCC+TGG - chr2_3:63532674-63532693 Msa0305630:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 63530428 63533488 63530428 ID=Msa0305630;Name=Msa0305630
chr2_3 mRNA 63530428 63533488 63530428 ID=Msa0305630-mRNA-1;Parent=Msa0305630;Name=Msa0305630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=311|1|1|1|1|1|10|263|289
chr2_3 exon 63530428 63530753 63530428 ID=Msa0305630-mRNA-1:exon:21228;Parent=Msa0305630-mRNA-1
chr2_3 exon 63530946 63531014 63530946 ID=Msa0305630-mRNA-1:exon:21227;Parent=Msa0305630-mRNA-1
chr2_3 exon 63531147 63531252 63531147 ID=Msa0305630-mRNA-1:exon:21226;Parent=Msa0305630-mRNA-1
chr2_3 exon 63531350 63531405 63531350 ID=Msa0305630-mRNA-1:exon:21225;Parent=Msa0305630-mRNA-1
chr2_3 exon 63531483 63531542 63531483 ID=Msa0305630-mRNA-1:exon:21224;Parent=Msa0305630-mRNA-1
chr2_3 exon 63531637 63531721 63531637 ID=Msa0305630-mRNA-1:exon:21223;Parent=Msa0305630-mRNA-1
chr2_3 exon 63531827 63531921 63531827 ID=Msa0305630-mRNA-1:exon:21222;Parent=Msa0305630-mRNA-1
chr2_3 exon 63532238 63532363 63532238 ID=Msa0305630-mRNA-1:exon:21221;Parent=Msa0305630-mRNA-1
chr2_3 exon 63532464 63532515 63532464 ID=Msa0305630-mRNA-1:exon:21220;Parent=Msa0305630-mRNA-1
chr2_3 exon 63533020 63533488 63533020 ID=Msa0305630-mRNA-1:exon:21219;Parent=Msa0305630-mRNA-1
chr2_3 five_prime_UTR 63533178 63533488 63533178 ID=Msa0305630-mRNA-1:five_prime_utr;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63533020 63533177 63533020 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63532464 63532515 63532464 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63532238 63532363 63532238 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63531827 63531921 63531827 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63531637 63531721 63531637 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63531483 63531542 63531483 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63531350 63531405 63531350 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63531147 63531252 63531147 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63530946 63531014 63530946 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 CDS 63530691 63530753 63530691 ID=Msa0305630-mRNA-1:cds;Parent=Msa0305630-mRNA-1
chr2_3 three_prime_UTR 63530428 63530690 63530428 ID=Msa0305630-mRNA-1:three_prime_utr;Parent=Msa0305630-mRNA-1
Gene Sequence

>Msa0305630

ATGGCTGTGGCTATGGCTGCTTGCAGTCTTGGACTTCACTTGAGTTCTGATAATAACTTCTTCAGACCTTTGGAAAAATCCATTTGCAGTGCCTCCATCTTGAAGACCACTTCTATGTATGATACTAGTAAACTATCTTTCAGTCTTCAAAAAACTAGATTATCATCTTCAGCAATTACAATCATCCCTCGAGCAACAGCTGTTTCTGAGGATGGAAATCAAGGTGTTGCTGATACTGTCCCAACACCTATAGTTATAATTGATCAAGACTCTGATCCTGATGCAACTGTCGTCGAGATTACCTTTGGTGATCGCCTTGGTGCTCTTCTTGACACCATGAATGCATTGAAAAACTTGGGACTGAATGTTGTTAAGGCAAGCGTGTGTCTGGACTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAGGCTGATACAGGTAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTTGACAATTTTAAATAACATGATCACATATCACCCGGAATCAAGTGCCCAATTAGCTCTAGGAGCAGCTTTTGGACTTATGCCTCCAAAGGAGCAGCTTGATGTGGACATAGCGACCCACTTAACAATCACCGATGATGGTCCTGACAGAAGTTTGCTGTATGTGGAGACAGCTGATCGGCCTGGATTATTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCTGGTGAATTTGACACTGAGGGGCTTTTGGCTAAGGCAAAGTTTCATGTCAGCTACAATGGTAAAGCCACCATCAAGCCTCTCCAGCAGGTTCTTGTTAACAGCTTGAGATACTTCTTGACTCGTCCTACAACTGAGGAATCCAGTTTTTGA

Protein sequence

>Msa0305630

MAVAMAACSLGLHLSSDNNFFRPLEKSICSASILKTTSMYDTSKLSFSLQKTRLSSSAITIIPRATAVSEDGNQGVADTVPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKASVCLDSSGKHNKFSITKADTGRKVEDPELLEAIRLTILNNMITYHPESSAQLALGAAFGLMPPKEQLDVDIATHLTITDDGPDRSLLYVETADRPGLLVDLVKIITDINIAVESGEFDTEGLLAKAKFHVSYNGKATIKPLQQVLVNSLRYFLTRPTTEESSF*